Query psy7379
Match_columns 465
No_of_seqs 379 out of 1308
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 16:44:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gnt_B Carbohydrate-responsive 17.7 68 0.0023 18.4 1.7 13 239-251 7-19 (26)
2 3odu_A C-X-C chemokine recepto 9.7 8.4E+02 0.029 23.5 8.6 13 308-320 164-176 (502)
3 3eml_A Human adenosine A2A rec 8.9 1.2E+03 0.04 22.1 12.7 16 305-320 134-149 (488)
4 1cn3_F Fragment of coat protei 7.7 1.1E+02 0.0038 17.8 0.5 17 441-457 6-22 (29)
5 1sb0_B Protein C-MYB; CREB-bin 6.5 1.4E+02 0.0048 17.3 0.5 8 224-231 1-8 (26)
6 1rwu_A Hypothetical UPF0250 pr 6.1 6.6E+02 0.023 19.9 4.6 48 361-408 50-101 (109)
7 4aw6_A CAAX prenyl protease 1 6.0 1.9E+03 0.064 22.0 12.5 13 291-303 213-225 (482)
8 1q02_A Sequestosome 1; helical 5.9 3.7E+02 0.013 18.6 2.4 26 224-249 9-34 (52)
9 2zxe_B Na+,K+-ATPase beta subu 5.4 5.3E+02 0.018 24.5 4.2 15 272-286 29-43 (305)
10 3ixz_B Potassium-transporting 5.1 4.9E+02 0.017 24.6 3.7 14 273-286 34-47 (290)
No 1
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=17.67 E-value=68 Score=18.43 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHH
Q psy7379 239 NGVHWTAWFIDSI 251 (465)
Q Consensus 239 ~~~ywlswfi~~~ 251 (465)
+.+.|-+|++.+.
T Consensus 7 nnaiwrawyiqyv 19 (26)
T 4gnt_B 7 NNAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHH
Confidence 3578999998763
No 2
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=9.67 E-value=8.4e+02 Score=23.50 Aligned_cols=13 Identities=8% Similarity=-0.110 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHhh
Q psy7379 308 AASGGIIYFLLYL 320 (465)
Q Consensus 308 ~~~~~li~~~~~l 320 (465)
..+..++|++..+
T Consensus 164 ~~~i~~~W~~~~~ 176 (502)
T 3odu_A 164 KVVYVGVWIPALL 176 (502)
T ss_dssp THHHHHTHHHHHH
T ss_pred HHhhhHHHHHHHH
Confidence 3444455655443
No 3
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=8.86 E-value=1.2e+03 Score=22.13 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=8.8
Q ss_pred chhhHHHHHHHHHHhh
Q psy7379 305 NIAAASGGIIYFLLYL 320 (465)
Q Consensus 305 ~~A~~~~~li~~~~~l 320 (465)
+.+..+..++|++..+
T Consensus 134 ~~~~~~i~~~W~~s~~ 149 (488)
T 3eml_A 134 TRAKGIIAICWVLSFA 149 (488)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555566666554
No 4
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=7.70 E-value=1.1e+02 Score=17.80 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=13.5
Q ss_pred ccCCcccceeccccccc
Q psy7379 441 FVGNVSYKKVCLGWELT 457 (465)
Q Consensus 441 ~~~~~~~~~~~~~~~~~ 457 (465)
-+|+.||..|-++|-+|
T Consensus 6 gggaashqrvtpdwmlp 22 (29)
T 1cn3_F 6 GGGAASHQRVTPDWMLP 22 (29)
T ss_dssp CSTTTCCCCCEEGGGHH
T ss_pred CCccccccccCchhhHH
Confidence 35788899999988765
No 5
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=6.55 E-value=1.4e+02 Score=17.30 Aligned_cols=8 Identities=50% Similarity=0.966 Sum_probs=4.5
Q ss_pred HHHhhhhh
Q psy7379 224 KQERLKEM 231 (465)
Q Consensus 224 Ke~~lke~ 231 (465)
||+|+||+
T Consensus 1 kEkriKEl 8 (26)
T 1sb0_B 1 KEKRIKEL 8 (26)
T ss_dssp CHHHHHHH
T ss_pred CchHHHHH
Confidence 45566654
No 6
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=6.14 E-value=6.6e+02 Score=19.91 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=36.5
Q ss_pred chhHHHHHHhhcC-Ccee---ccccccEEEEEcCCCCCCcchHHHHHHHHHh
Q psy7379 361 EPDVTQLIRSFLP-AANI---HKISGSEVTYVLPQDPASMGAYVSLFESLSE 408 (465)
Q Consensus 361 ~~~v~~~v~~~ip-~a~l---~~~~g~el~y~LP~~~~~~~~f~~lF~~Le~ 408 (465)
.+.+.+.++.++| +... .+.-|.|.++.+.-.-.++...-.++++|.+
T Consensus 50 ~~~V~~vv~~~~p~d~~~~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 50 VDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGK 101 (109)
T ss_dssp HHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCCCceecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 4578899999999 5543 4788999999887665555678889988854
No 7
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=6.03 E-value=1.9e+03 Score=21.99 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCc
Q psy7379 291 IAQSFLYSVLFDQ 303 (465)
Q Consensus 291 i~f~fliS~fF~~ 303 (465)
..+-.++..+|+|
T Consensus 213 ~iyP~~I~PLfnk 225 (482)
T 4aw6_A 213 TIYADYIAPLFDK 225 (482)
T ss_dssp HHHHHHTHHHHSC
T ss_pred HHHHHHHHHHcCC
Confidence 3345667778876
No 8
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=5.89 E-value=3.7e+02 Score=18.57 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHhhhhhHhhcCCCchHHHHHHHHH
Q psy7379 224 KQERLKEMMRVMGLSNGVHWTAWFID 249 (465)
Q Consensus 224 Ke~~lke~m~imGl~~~~ywlswfi~ 249 (465)
|-...-+.|..||-++--=|++-++.
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~ 34 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQ 34 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHH
Confidence 33445578999999998889887654
No 9
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=5.43 E-value=5.3e+02 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=9.0
Q ss_pred ccCChHHHHHHHHHH
Q psy7379 272 QHSNPVIIFIFLVSF 286 (465)
Q Consensus 272 ~~s~~~~lf~~l~~y 286 (465)
+.++|+.+++|+++|
T Consensus 29 T~~sW~~IllFYliF 43 (305)
T 2zxe_B 29 TGSSWFKIFLFYLIF 43 (305)
T ss_dssp CSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 345777776666443
No 10
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=5.14 E-value=4.9e+02 Score=24.60 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=8.4
Q ss_pred cCChHHHHHHHHHH
Q psy7379 273 HSNPVIIFIFLVSF 286 (465)
Q Consensus 273 ~s~~~~lf~~l~~y 286 (465)
.++|+.+++|+++|
T Consensus 34 ~~sW~~IllFYliF 47 (290)
T 3ixz_B 34 LSRWVWISLYYVAF 47 (290)
T ss_pred hhhHHHHHHHHHHH
Confidence 45677666665544
Done!