Query psy7379
Match_columns 465
No_of_seqs 379 out of 1308
Neff 7.6
Searched_HMMs 13730
Date Fri Aug 16 16:44:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7379.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7379hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dhwa1 f.58.1.1 (A:6-208) D-m 8.0 3.8E+02 0.028 20.7 6.8 51 213-263 99-149 (203)
2 d2onkc1 f.58.1.1 (C:1-252) Mol 6.4 5.8E+02 0.042 20.2 8.5 53 213-265 143-195 (252)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.9 8E+02 0.058 20.1 7.5 27 299-325 44-72 (248)
4 d1b0aa2 c.58.1.2 (A:2-122) Tet 4.4 2.3E+02 0.017 20.9 2.8 37 73-114 68-104 (121)
5 d3d31c1 f.58.1.1 (C:13-260) Su 3.7 8.7E+02 0.063 18.9 8.7 51 213-263 143-193 (248)
6 d1fkma2 a.69.2.1 (A:443-630) Y 3.7 4.6E+02 0.033 20.3 4.4 39 215-253 10-48 (188)
7 d1xrsb2 d.230.4.1 (B:33-84) D- 3.7 2.7E+02 0.02 17.6 2.1 15 225-239 17-31 (52)
8 d1xl3c1 a.243.1.1 (C:2-92) Tye 3.6 2.4E+02 0.017 20.0 2.1 14 155-168 70-83 (91)
9 d1oedc_ f.36.1.1 (C:) Acetylch 3.5 8.1E+02 0.059 19.3 6.2 21 283-303 72-92 (260)
10 d3b2ua2 g.3.9.1 (A:481-502) EG 3.4 1.1E+02 0.0083 16.1 0.0 11 133-143 10-20 (26)
No 1
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=7.96 E-value=3.8e+02 Score=20.72 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 213 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSL 263 (465)
Q Consensus 213 ~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~ 263 (465)
....++.-.++-.+++.|.-+..|.+.|-.+.--.+-.....+++......
T Consensus 99 ~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~ 149 (203)
T d3dhwa1 99 IARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 149 (203)
T ss_dssp HHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHH
Confidence 334556667777889999999999999988876666666665555544433
No 2
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.43 E-value=5.8e+02 Score=20.24 Aligned_cols=53 Identities=17% Similarity=0.074 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 213 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 265 (465)
Q Consensus 213 ~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il 265 (465)
...+.+.-++.-.+++.|..+++|.+.+..|.--.+-.....++..+++..+.
T Consensus 143 ~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~ 195 (252)
T d2onkc1 143 YINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWAR 195 (252)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHHHHHHHHhcCCCccccceEEEhHHhHHHHHHHHHHHHHH
Confidence 44445566666678899999999999998887666666665555555554444
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=8e+02 Score=20.13 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=15.4
Q ss_pred HhcCccchhh--HHHHHHHHHHhhhhhhh
Q psy7379 299 VLFDQANIAA--ASGGIIYFLLYLPYPFL 325 (465)
Q Consensus 299 ~fF~~a~~A~--~~~~li~~~~~lp~~~~ 325 (465)
++|+|-..+. +.-++++++.+.-+.++
T Consensus 44 vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~ 72 (248)
T d2r6gf1 44 IFANRKAYAWRYVYPGMAGMGLFVLFPLV 72 (248)
T ss_dssp HHSSSCCTTHHHHHHHHHHHHHHTHHHHH
T ss_pred EEEccCccceehhhhHHHHHHHHHHHhhe
Confidence 4667766665 45556655555544443
No 4
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=4.37 E-value=2.3e+02 Score=20.86 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=26.0
Q ss_pred ceeecCCHHHHHHHHHhhcCCCceEEEEEEcCCCCCCCCCee
Q psy7379 73 KIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTL 114 (465)
Q Consensus 73 ~~~~f~se~~m~~~~~~~~~~~~~~agIvF~~~~~~~~p~~~ 114 (465)
.+-.-.+++++.+.+..+++..++-+-++.. ++|.++
T Consensus 68 ~l~~~~t~~~l~~~I~~lN~d~~v~GIlvql-----PLP~~i 104 (121)
T d1b0aa2 68 DLPETTSEAELLELIDTLNADNTIDGILVQL-----PLPAGI 104 (121)
T ss_dssp EECTTCCHHHHHHHHHHHHTCTTCCEEEECS-----SCCTTS
T ss_pred eccccccHHHHHHHHHHHhCCCchhhhhhcC-----CCCCCc
Confidence 4445667899999888776677777777775 456655
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=3.70 E-value=8.7e+02 Score=18.86 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 213 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSL 263 (465)
Q Consensus 213 ~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~ 263 (465)
...++..-.++-..++.|.-+++|.+.+..+.-=.+-.....+++..+++.
T Consensus 143 ~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f 193 (248)
T d3d31c1 143 LANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTW 193 (248)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666788999999999999887765545455444444444333
No 6
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.67 E-value=4.6e+02 Score=20.30 Aligned_cols=39 Identities=8% Similarity=-0.056 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHH
Q psy7379 215 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVV 253 (465)
Q Consensus 215 ~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~ 253 (465)
..+..++.++.-++-+.++-.|+....|-.-|++.-+.-
T Consensus 10 ~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~ 48 (188)
T d1fkma2 10 KNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMR 48 (188)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhc
Confidence 345688899999999999999999999999998765544
No 7
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=3.65 E-value=2.7e+02 Score=17.60 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHhhhhhHhhcCCCc
Q psy7379 225 QERLKEMMRVMGLSN 239 (465)
Q Consensus 225 e~~lke~m~imGl~~ 239 (465)
+.--|++++.||+.+
T Consensus 17 ~eAAk~la~kMGl~~ 31 (52)
T d1xrsb2 17 AEAAKQIALKMGLEE 31 (52)
T ss_dssp HHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 455678888999876
No 8
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=3.65 E-value=2.4e+02 Score=20.05 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q psy7379 155 AYLQDMVEQSIIQE 168 (465)
Q Consensus 155 l~lQ~~id~aii~~ 168 (465)
-..|.++|+||.+.
T Consensus 70 ~a~Q~ALD~aI~~E 83 (91)
T d1xl3c1 70 QMCQNAIDMAIESE 83 (91)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 37999999999874
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.49 E-value=8.1e+02 Score=19.28 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q psy7379 283 LVSFCVATIAQSFLYSVLFDQ 303 (465)
Q Consensus 283 l~~y~~s~i~f~fliS~fF~~ 303 (465)
+++-+++++..++.+...+.+
T Consensus 72 ~~~v~~s~~~t~~Vl~~~~~~ 92 (260)
T d1oedc_ 72 MSLVTGVIVNCGIVLNFHFRT 92 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhheeeeecc
Confidence 333445555555555555443
No 10
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=1.1e+02 Score=16.14 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=7.9
Q ss_pred CccCCCCCCCC
Q psy7379 133 RFYTLDPRSRP 143 (465)
Q Consensus 133 ~~~~~gpr~~~ 143 (465)
-+|.|+||+--
T Consensus 10 gcwgpeprdcv 20 (26)
T d3b2ua2 10 GCWGPEPRDCV 20 (26)
T ss_dssp CBSSSSGGGBS
T ss_pred cccCCCCCcee
Confidence 57888888643
Done!