RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7379
(465 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 8e-08
Identities = 38/216 (17%), Positives = 62/216 (28%), Gaps = 84/216 (38%)
Query: 262 SLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLP 321
L L +G ++H LV A F+ S L +Q F LP
Sbjct: 8 PLTLSHGS-LEHV-------LLVP-----TASFFIASQLQEQ------------FNKILP 42
Query: 322 YPFLSNWLNVLP----PLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLI-----RSFL 372
P + P LV F+ + V L +L
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFL------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 373 PAANIHKISGSEVTYVLPQDPASMG-------AYV----------------SLFESLSEN 409
+IH ++ +L ++ ++ Y+ +LF ++ E
Sbjct: 97 EGNDIHALAAK----LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 410 RAKLGIDSY------GISDTSLEEKWGSLQLGRKLW 439
A+L G +D EE L R L+
Sbjct: 153 NAQL----VAIFGGQGNTDDYFEE----L---RDLY 177
Score = 53.9 bits (129), Expect = 8e-08
Identities = 93/544 (17%), Positives = 165/544 (30%), Gaps = 172/544 (31%)
Query: 2 GRFLD-----VPNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQN----LTSSLNFL 52
G+FL V + +++L L F++ + + N L + L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLN----------LCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 53 NDT-QESMQYVVQ--LLQCIDFNKIVPYNDSATAENDAFLR---MDNNTLWALINF---- 102
NDT + +++ + I + P++ N A R N L A+ F
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKR--PFD---KKSNSALFRAVGEGNAQLVAI--FGGQG 164
Query: 103 -TQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDL-KYITFGF---AYL 157
T +++L+ Y L+GD I TL R D K T G +L
Sbjct: 165 NTDDYFEELR--DLYQT--YHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 158 QD---------MVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFP--LFMV 206
++ ++ I S P I + Q Y+ K + T P L
Sbjct: 220 ENPSNTPDKDYLLSIPI--------SCPLIGVIQL--AHYV--VTAKLLGFT-PGELRSY 266
Query: 207 LSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMI----------- 255
L S + +V + ++ W + F S+ I
Sbjct: 267 LKGATGHS---QGLV---------TAVAIAETDS--WES-FFVSVRKAITVLFFIGVRCY 311
Query: 256 -------ITAVLLS------------LLLVYG----HV---IQHSNPVI-----IFIFLV 284
+ +L +L + V + +N + + I LV
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 285 ----SFCVATIAQSFLYSVL-----------FDQANIAAASGGIIYFLLYLP--YPFLSN 327
+ V+ QS LY + DQ+ I + + + +LP PF S+
Sbjct: 372 NGAKNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 328 WLN-----VLPPLVNYFIT-------IPQDHNHTDHSSNQPSSDPE--PDVTQLIRSFLP 373
L + LV ++ IP S+ + I LP
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--GSDLRVLSGSISERIVDCIIR-LP 487
Query: 374 AANIH--KISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGID--SYGISDTSLEEKW 429
+ + + T++L P L N+ G+ G D + ++ +
Sbjct: 488 ---VKWETTTQFKATHILDFGPGGASGLGVL---THRNKDGTGVRVIVAGTLDINPDDDY 541
Query: 430 GSLQ 433
G Q
Sbjct: 542 GFKQ 545
Score = 41.2 bits (96), Expect = 8e-04
Identities = 75/454 (16%), Positives = 129/454 (28%), Gaps = 183/454 (40%)
Query: 64 QLLQCIDFNKIVPYNDSATAENDA----------FL-----RMDNNT-------LWALIN 101
QL + FNKI+P A +D FL ++ + L +
Sbjct: 32 QLQE--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 102 -FTQ---PGYD------KLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRP----LY-- 145
F G D KL ++ + LI YI+ R P + L+
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELI-KNYITARIMAKRPFDKKSNSALFRA 148
Query: 146 ----DLK-YITFG-----FAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIK 195
+ + FG Y +++ + + + Y + D IK
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRD---LYQT---------------YHVLVGD-LIK 189
Query: 196 AVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAW--------- 246
++T + + V+ + G++ W
Sbjct: 190 FSAETL-------SELIRTTLDAEKVFTQ---------------GLNILEWLENPSNTPD 227
Query: 247 --FIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQ- 303
++ SI + S P+I I L + V F L
Sbjct: 228 KDYLLSIPI--------------------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 304 -------------ANIAAASGG---------IIYFLLYL------PYPFLSNWLNVLPPL 335
IA I L ++ YP S LPP
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-----LPP- 321
Query: 336 VNYFITIPQDHNHTDHSSNQPS-----SD-PEPDVTQLIRSF---LPAAN-IHKIS---G 382
+I +D +++ PS S+ + V + LPA + IS G
Sbjct: 322 -----SILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNG 373
Query: 383 SEVTYVLPQDPASMGAYVSLFESLSENRAKLGID 416
++ V+ P S+ L +L + +A G+D
Sbjct: 374 AK-NLVVSGPPQSL---YGLNLTLRKAKAPSGLD 403
Score = 28.1 bits (62), Expect = 9.0
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 13/45 (28%)
Query: 53 NDTQESMQYVV--------QLLQCIDFNKI-----VPYNDSATAE 84
N E+ QYV + ++F K+ + S + E
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.019
Identities = 70/527 (13%), Positives = 133/527 (25%), Gaps = 168/527 (31%)
Query: 5 LDVPNGRQAIRN--EILRSVGNQSQTYNAAL--------NFFDSFFSDQNLTSSLN---- 50
+ + L S Q + + F S + S+
Sbjct: 55 IMSKDAVSGTLRLFWTLLS--KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 51 ------FLNDTQESMQYVVQ-----------LLQCIDFNKIVPYND---------SATAE 84
ND Q +Y V LL+ ++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 85 NDAFL-RMDNNTLW----------ALINFTQPGYDKLKPTLT------YSIRMSTALIGD 127
+ +MD W ++ Q ++ P T +I++ I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 128 ---TYISDRFYTLDPRS----RPLYDLKYI-TFGF--------------AYLQDMVEQSI 165
+ + Y + + K F +L I
Sbjct: 233 ELRRLLKSKPY---ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 166 IQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIV---- 221
+H TP V +++ + P ++ + S+I +SI
Sbjct: 290 SLDHHSMTLTPDEVKSLLL-------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 222 ---YEKQERLKEMMRVMGLS--------------------NGVHWTA------WF-IDSI 251
K ++ ++ S H WF +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 252 VVMIITAVLLSLLLVYGHVIQHSNPVIIFI--FLVSFCVATIAQSFLYSVLFDQANIAAA 309
VM++ L LV + I I + V + L+ + D NI
Sbjct: 403 DVMVVVNKLHKYSLV----EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 310 --SGGII------YFLLYLPYPFLSNW-----LNVLPPL-VNY-FITIPQDHNHTDHSSN 354
S +I YF ++ + L N + + + +++ F+ Q H + N
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDSTAWN 515
Query: 355 QPSS----------------DPEPDVTQLIRS---FLPAANIHKISG 382
S D +P +L+ + FLP + I
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Score = 28.3 bits (62), Expect = 6.4
Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 44/206 (21%)
Query: 271 IQHSNPVIIFIFLVSF-----CVATIAQSFLYSVLFDQA--NIAAASGGI--IYFLLYLP 321
Q+ I+ +F +F C Q S+L + +I + + L +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT- 70
Query: 322 YPFLSNWLNVLPPLVNYFITIPQDHNHT------DHSSNQPSSDPEPDVTQLIRSFLPAA 375
LS + V F+ N+ QPS + Q R +
Sbjct: 71 --LLSKQEEM----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---N 121
Query: 376 NIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYG---------ISDTSLE 426
+ + V+ + P Y+ L ++L E R + G D L
Sbjct: 122 DNQVFAKYNVSRLQP--------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 427 EKWGSLQLGRKLWLFVGNVSYKKVCL 452
K + WL + N + + L
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVL 199
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 29.9 bits (68), Expect = 1.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 138 DPRSRPLYDLKYITFGFAYLQDMVEQSII 166
DP RPL+D + ++E I+
Sbjct: 80 DPYLRPLHDALRDMVEPEVIPKLMEAGIV 108
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA,
nucleotide-binding, RNA-binding; 2.37A {Thermotoga
maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Length = 441
Score = 28.5 bits (64), Expect = 4.7
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 2 GRFLDVPNGRQAIRNEILRSVGNQS 26
G +D G + ++ ++R + S
Sbjct: 146 GLLIDFFGGYRDLKEGVIRVLHTLS 170
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation,
transferase; HET: ATP; 3.00A {Geobacillus
stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB:
1miv_A* 1miy_A*
Length = 404
Score = 28.4 bits (64), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 2 GRFLDVPNGRQAIRNEILRSVGN 24
G +D GR+AIR I+R+VG
Sbjct: 124 GTIIDPFGGREAIRRRIIRTVGE 146
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding,
nucleotide-binding, RNA-bindin transferase,
nucleotidyltransferase, ATP binding, A-phospho; 3.00A
{Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Length = 415
Score = 28.1 bits (63), Expect = 7.5
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 2 GRFLDVPNGRQAIRNEILRSVGNQSQTYNA-ALNFFDSF-FSDQNLTSSLNFL--NDTQE 57
D G + +++ ++R +GN Y + + F+ + L +T E
Sbjct: 148 FTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFA-----AKLGMRISPETAE 202
Query: 58 SMQYVVQLLQCI 69
+ + LL I
Sbjct: 203 PIPRLATLLNDI 214
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: APC; 2.80A {Aquifex aeolicus}
SCOP: a.173.1.1 d.218.1.4
Length = 390
Score = 27.8 bits (62), Expect = 7.9
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 2 GRFLDVPNGRQAIRNEILRSVGNQS 26
G +D G + ++++++R + S
Sbjct: 121 GTLIDYFGGLRDLKDKVIRVLHPVS 145
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 27.6 bits (61), Expect = 9.5
Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 11/88 (12%)
Query: 267 YGH---VIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYP 323
G ++ + + + Q A + L P+
Sbjct: 43 LGCTGIWLKSEGGTNVCVDFW-CGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFV 101
Query: 324 FLSNWLNVLPPLVNYFITIPQDHNHTDH 351
+ + T H+H DH
Sbjct: 102 LD---PFAIRQIDAVLAT----HDHNDH 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,004,919
Number of extensions: 406542
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 23
Length of query: 465
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 368
Effective length of database: 3,993,456
Effective search space: 1469591808
Effective search space used: 1469591808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.7 bits)