RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7379
         (465 letters)



>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
           small subunit C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 26.7 bits (58), Expect = 5.0
 Identities = 12/60 (20%), Positives = 19/60 (31%)

Query: 187 CYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAW 246
                   + V K  P  + LS        C   +   Q+ L+  + V G+  G    A 
Sbjct: 66  IVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLAL 125


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 26.2 bits (58), Expect = 8.4
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 191 DQFIKAVSKTFPLFMVLSW 209
           D+F++AV+  + +  ++ +
Sbjct: 214 DEFMEAVTSRYGMNCLIQF 232


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,712,228
Number of extensions: 78534
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 10
Length of query: 465
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 377
Effective length of database: 1,199,356
Effective search space: 452157212
Effective search space used: 452157212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)