BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy738
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 105 bits (263), Expect = 5e-24, Method: Composition-based stats.
Identities = 43/57 (75%), Positives = 50/57 (87%)
Query: 2 CGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINP 58
CGG LEI TCSHVGHVFRK+TPYTFPGGT I+N NN RLAEVW+DE+K+F+Y I+P
Sbjct: 243 CGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISP 299
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 87.0 bits (214), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/57 (63%), Positives = 41/57 (71%)
Query: 2 CGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINP 58
CGG LEI CS VGHVFRK PYTFPGG+ + N R AEVW+DE+K+FYYA P
Sbjct: 275 CGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVP 331
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 1 MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPE 59
MCGG +E CS VGH++RK PY P G S + N R+AEVW+DE+ + Y PE
Sbjct: 322 MCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS--LARNLKRVAEVWMDEYAEYIYQRRPE 378
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 9 ATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYY----AINPENMI 62
+ C+ + HV P P +IVN + + + W + YY AI P+ +I
Sbjct: 70 SICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLI 127
>pdb|2ZCI|A Chain A, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|B Chain B, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|C Chain C, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|D Chain D, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
Length = 610
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 22 TPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPEN 60
TP T PG T+ +V + A WL + YA+NPEN
Sbjct: 283 TP-TIPGWTAQVVGDDIA-----WLKLREDGLYAVNPEN 315
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 9 ATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYY----AINPENMI 62
+ C+ + HV P P +IVN + + + W + YY AI P+ +I
Sbjct: 70 SICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLI 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,274,495
Number of Sequences: 62578
Number of extensions: 71015
Number of successful extensions: 168
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)