Query psy738
Match_columns 62
No_of_seqs 125 out of 422
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 16:45:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ffu_A Ppgalnact-2, polypeptid 99.5 3.9E-15 1.3E-19 106.1 3.9 60 1-60 274-333 (501)
2 1xhb_A Polypeptide N-acetylgal 99.5 4.1E-15 1.4E-19 104.7 3.9 60 1-60 242-301 (472)
3 2d7i_A Polypeptide N-acetylgal 99.5 2.1E-14 7.2E-19 104.9 4.2 59 1-61 322-380 (570)
4 3a21_A Putative secreted alpha 97.3 1E-05 3.5E-10 60.1 -2.5 23 36-59 423-445 (614)
5 3mao_A Methionine-R-sulfoxide 52.0 6.4 0.00022 23.8 1.5 12 12-23 69-80 (105)
6 1odh_A MGCM1; transcription fa 43.2 10 0.00034 25.0 1.4 19 2-20 116-139 (174)
7 3k6q_A Putative ligand binding 40.3 13 0.00045 23.5 1.6 19 33-51 86-104 (139)
8 2kao_A Methionine-R-sulfoxide 34.6 16 0.00054 22.7 1.3 12 12-23 76-87 (124)
9 3e0o_A Peptide methionine sulf 25.7 23 0.00078 22.5 0.9 11 12-23 98-108 (144)
10 3hcj_A MSRB, peptide methionin 23.1 27 0.00093 22.4 0.9 10 12-21 107-116 (154)
11 2k8d_A Peptide methionine sulf 22.4 26 0.00088 22.4 0.7 10 12-21 118-127 (151)
12 2l48_A N-acetylmuramoyl-L-alan 21.8 19 0.00064 21.1 -0.0 22 33-55 62-83 (85)
13 3hcg_A Peptide methionine sulf 21.7 35 0.0012 21.6 1.2 10 12-21 100-109 (146)
14 1cfe_A Pathogenesis-related pr 21.3 35 0.0012 19.9 1.1 20 37-56 63-82 (135)
15 1d02_A Type II restriction enz 21.2 33 0.0011 22.9 1.1 26 34-59 156-183 (202)
16 2kv1_A Methionine-R-sulfoxide 20.7 56 0.0019 20.2 2.0 18 5-23 66-87 (124)
No 1
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.53 E-value=3.9e-15 Score=106.07 Aligned_cols=60 Identities=60% Similarity=1.185 Sum_probs=55.0
Q ss_pred CccceeEEecccceEeeccCCCCCCCCCCcchhhhHHHhHhHHhhccccchhhhhcCCCC
Q psy738 1 MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPEN 60 (62)
Q Consensus 1 mCGG~ie~~PCSRVGHifr~~~Py~~~~~~~~~~~rN~~RvaevWmDeyk~~~y~~~p~~ 60 (62)
+||++++++||++|+|++|+.+||+++.+......+|..|++|+|||+|+++||..+|.+
T Consensus 274 ~~G~~i~~~p~~~v~H~~r~~~~~~~~~~~~~~~~~n~~r~~~~w~d~~~~~~y~~~p~~ 333 (501)
T 2ffu_A 274 QCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSA 333 (501)
T ss_dssp HTTCEEEEEEEEEEEECCCSSCCSCCTTCHHHHHHHHHHHHHHHHCGGGHHHHHHHCGGG
T ss_pred hcCCeEEEccCcEEEEEccCcCCCcCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 489999999999999999999999998765566789999999999999999999999875
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.53 E-value=4.1e-15 Score=104.70 Aligned_cols=60 Identities=72% Similarity=1.350 Sum_probs=44.7
Q ss_pred CccceeEEecccceEeeccCCCCCCCCCCcchhhhHHHhHhHHhhccccchhhhhcCCCC
Q psy738 1 MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPEN 60 (62)
Q Consensus 1 mCGG~ie~~PCSRVGHifr~~~Py~~~~~~~~~~~rN~~RvaevWmDeyk~~~y~~~p~~ 60 (62)
+||++++++||++|+|++|+.+||..+.+....+.+|.+|++++|||+||++||...|.+
T Consensus 242 ~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~~~~~p~~ 301 (472)
T 1xhb_A 242 QCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGV 301 (472)
T ss_dssp HTTCEEEEEEEEEEEEEC------------CHHHHHHHHHHHHHHCGGGGHHHHHTSTTG
T ss_pred hcCCeEEEccCcEEEEEccCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 489999999999999999999999987665567889999999999999999999999975
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.47 E-value=2.1e-14 Score=104.90 Aligned_cols=59 Identities=46% Similarity=0.934 Sum_probs=53.4
Q ss_pred CccceeEEecccceEeeccCCCCCCCCCCcchhhhHHHhHhHHhhccccchhhhhcCCCCC
Q psy738 1 MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPENM 61 (62)
Q Consensus 1 mCGG~ie~~PCSRVGHifr~~~Py~~~~~~~~~~~rN~~RvaevWmDeyk~~~y~~~p~~~ 61 (62)
+||++++++|||+|+|++|...||+.+.+ ..+.+|.+|++++|||+||++||..+|.++
T Consensus 322 ~~G~~i~~~p~~~v~H~~r~~~~~~~~~~--~~~~~n~~r~~~~W~d~~~~~~y~~~p~~~ 380 (570)
T 2d7i_A 322 MCGGRMEDIPCSRVGHIYRKYVPYKVPAG--VSLARNLKRVAEVWMDEYAEYIYQRRPEYR 380 (570)
T ss_dssp HTTCEEEEEEEEEEEECCCSSCCSCCCSS--CCHHHHHHHHHHHHCGGGHHHHHTTCGGGT
T ss_pred hCCCeEEEccCeEEEEEccccCCCCCCch--hhhHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 48999999999999999999999998754 567899999999999999999999998653
No 4
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=97.33 E-value=1e-05 Score=60.08 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHhHhHHhhccccchhhhhcCCC
Q psy738 36 HNNARLAEVWLDEWKHFYYAINPE 59 (62)
Q Consensus 36 rN~~RvaevWmDeyk~~~y~~~p~ 59 (62)
+|++|+|||||||||+++|. .|.
T Consensus 423 ~N~~R~aeVwmD~~k~~~~~-~P~ 445 (614)
T 3a21_A 423 TSSARTATLQVNGQTATTVS-FPP 445 (614)
T ss_dssp SSSCEEEEEEETTSCCEEEE-ECC
T ss_pred CCCCceEEEEECCceeEEEe-cCC
Confidence 79999999999999999997 464
No 5
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=52.02 E-value=6.4 Score=23.83 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.5
Q ss_pred cceEeeccCCCC
Q psy738 12 SHVGHVFRKSTP 23 (62)
Q Consensus 12 SRVGHifr~~~P 23 (62)
|++||||....|
T Consensus 69 ~HLGHVF~~DGP 80 (105)
T 3mao_A 69 NGLGHEFLNDGP 80 (105)
T ss_dssp CEEEEEETTCSS
T ss_pred CccCcccCCCCc
Confidence 789999975555
No 6
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=43.21 E-value=10 Score=24.95 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=14.8
Q ss_pred ccceeEEecccc-----eEeeccC
Q psy738 2 CGGVLEIATCSH-----VGHVFRK 20 (62)
Q Consensus 2 CGG~ie~~PCSR-----VGHifr~ 20 (62)
|-|+|+++||.= |-|+.|.
T Consensus 116 C~g~L~~~~Crgh~GyPVThFWrh 139 (174)
T 1odh_A 116 CNGPLKLIPCRGHGGFPVTNFWRH 139 (174)
T ss_dssp SCCBEEEECCCTBTTBCCEEEEEE
T ss_pred CCcceeeEeccCcCCCcceEEEEE
Confidence 889999999962 4566664
No 7
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=40.33 E-value=13 Score=23.54 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=16.1
Q ss_pred hhhHHHhHhHHhhccccch
Q psy738 33 IVNHNNARLAEVWLDEWKH 51 (62)
Q Consensus 33 ~~~rN~~RvaevWmDeyk~ 51 (62)
.+..|++-.|+.||++++-
T Consensus 86 ~li~~l~eYAedY~n~~~~ 104 (139)
T 3k6q_A 86 KLAEDLLEYAQDYMNDFKL 104 (139)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999873
No 8
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=34.56 E-value=16 Score=22.72 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.3
Q ss_pred cceEeeccCCCC
Q psy738 12 SHVGHVFRKSTP 23 (62)
Q Consensus 12 SRVGHifr~~~P 23 (62)
|++||||..+.|
T Consensus 76 ~HLGHVF~~DGP 87 (124)
T 2kao_A 76 NGLGHEFLNDGP 87 (124)
T ss_dssp CCCEEECCSSCS
T ss_pred CcCCccCCCCCc
Confidence 789999975545
No 9
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=25.66 E-value=23 Score=22.47 Aligned_cols=11 Identities=64% Similarity=1.220 Sum_probs=8.8
Q ss_pred cceEeeccCCCC
Q psy738 12 SHVGHVFRKSTP 23 (62)
Q Consensus 12 SRVGHifr~~~P 23 (62)
|++||||.. .|
T Consensus 98 ~HLGHVF~D-GP 108 (144)
T 3e0o_A 98 SHLGHVFND-GP 108 (144)
T ss_dssp CEEEEEESC-CS
T ss_pred CccCCccCC-CC
Confidence 789999965 45
No 10
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=23.14 E-value=27 Score=22.37 Aligned_cols=10 Identities=60% Similarity=1.099 Sum_probs=8.3
Q ss_pred cceEeeccCC
Q psy738 12 SHVGHVFRKS 21 (62)
Q Consensus 12 SRVGHifr~~ 21 (62)
|+.||||...
T Consensus 107 ~HLGHVF~DG 116 (154)
T 3hcj_A 107 SHLGHVFPDG 116 (154)
T ss_dssp CEEEEEESCS
T ss_pred CccCCccCCC
Confidence 7999999654
No 11
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.36 E-value=26 Score=22.39 Aligned_cols=10 Identities=50% Similarity=1.082 Sum_probs=8.1
Q ss_pred cceEeeccCC
Q psy738 12 SHVGHVFRKS 21 (62)
Q Consensus 12 SRVGHifr~~ 21 (62)
|+.||||...
T Consensus 118 ~HLGHVF~DG 127 (151)
T 2k8d_A 118 AHLGHVFDDG 127 (151)
T ss_dssp EEEEEEEECS
T ss_pred CcCCcccCCC
Confidence 6899999754
No 12
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=21.83 E-value=19 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=16.9
Q ss_pred hhhHHHhHhHHhhccccchhhhh
Q psy738 33 IVNHNNARLAEVWLDEWKHFYYA 55 (62)
Q Consensus 33 ~~~rN~~RvaevWmDeyk~~~y~ 55 (62)
.+..+.+..+.-|||+ |..+|.
T Consensus 62 ~~s~~eLdk~t~wLD~-rgWwYe 83 (85)
T 2l48_A 62 PTSDAQLKAMKEYLDR-KGWWYE 83 (85)
T ss_dssp CCCHHHHHHHHHHHHH-TTCCEE
T ss_pred CCCHHHHHHHHHHHhc-cCceEE
Confidence 3456888999999998 567764
No 13
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=21.72 E-value=35 Score=21.65 Aligned_cols=10 Identities=60% Similarity=1.099 Sum_probs=8.0
Q ss_pred cceEeeccCC
Q psy738 12 SHVGHVFRKS 21 (62)
Q Consensus 12 SRVGHifr~~ 21 (62)
|++||||...
T Consensus 100 ~HLGHVF~DG 109 (146)
T 3hcg_A 100 SHLGHVFPDG 109 (146)
T ss_dssp CEEEEEESCS
T ss_pred CccCceeCCC
Confidence 6899999653
No 14
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1
Probab=21.28 E-value=35 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=15.5
Q ss_pred HHhHhHHhhccccchhhhhc
Q psy738 37 NNARLAEVWLDEWKHFYYAI 56 (62)
Q Consensus 37 N~~RvaevWmDeyk~~~y~~ 56 (62)
+...+++-|++|.+.+-|..
T Consensus 63 ~~~~~v~~W~~E~~~y~~~~ 82 (135)
T 1cfe_A 63 TGRAAVQLWVSERPSYNYAT 82 (135)
T ss_dssp CHHHHHHHHHTTGGGEEGGG
T ss_pred CHHHHHHHHHhHHhhCCCCC
Confidence 45678899999988776654
No 15
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA complex, distorted double HE hydrolase-DNA complex; HET: DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Probab=21.23 E-value=33 Score=22.89 Aligned_cols=26 Identities=23% Similarity=0.719 Sum_probs=19.3
Q ss_pred hhHHHhHhHH--hhccccchhhhhcCCC
Q psy738 34 VNHNNARLAE--VWLDEWKHFYYAINPE 59 (62)
Q Consensus 34 ~~rN~~Rvae--vWmDeyk~~~y~~~p~ 59 (62)
+.|--.|+.| -|.|+|...||-++|.
T Consensus 156 Itrdpkr~reitfwfd~y~~~yF~Wr~~ 183 (202)
T 1d02_A 156 ITRDPKRVREITFWYDHYQDNYFMWRPN 183 (202)
T ss_dssp GGGCHHHHHHHHHHHTTCTTSEEEECTT
T ss_pred cccCccceeeeeEEecccCccEEEeeCC
Confidence 4555555555 5999999998888775
No 16
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=20.68 E-value=56 Score=20.17 Aligned_cols=18 Identities=33% Similarity=0.787 Sum_probs=11.8
Q ss_pred eeEEeccc----ceEeeccCCCC
Q psy738 5 VLEIATCS----HVGHVFRKSTP 23 (62)
Q Consensus 5 ~ie~~PCS----RVGHifr~~~P 23 (62)
++| |-|+ ++||||..+.|
T Consensus 66 r~E-v~C~~Cg~HLGHVF~~DGP 87 (124)
T 2kv1_A 66 ALK-VSCGKCGNGLGHEFLNDGP 87 (124)
T ss_dssp CEE-EECTTTTCCCEEECTTSCT
T ss_pred EEE-EEEecCCCccCCccCCCCC
Confidence 344 4465 59999976655
Done!