RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy738
         (62 letters)



>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
           mucin-type O-linked glycans.  UDP-GalNAc: polypeptide
           alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
           initiate the formation of mucin-type, O-linked glycans
           by catalyzing the transfer of
           alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
           hydroxyl groups of Ser or Thr residues of core proteins
           to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
           enzymes are type II membrane proteins with a GT-A type
           catalytic domain and a lectin domain located on the
           lumen side of the Golgi apparatus. In human, there are
           15 isozymes of pp-GalNAc-Ts, representing the largest of
           all glycosyltransferase families. Each isozyme has
           unique but partially redundant substrate specificity for
           glycosylation sites on acceptor proteins.
          Length = 299

 Score = 88.4 bits (220), Expect = 3e-23
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 1   MCGGVLEIATCSHVGHVFRKS-TPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPE 59
            CGG +EI  CS VGH+FR+   PYTFPGG S  V  N  R+AEVW+DE+K ++Y   PE
Sbjct: 209 QCGGSIEIVPCSRVGHIFRRKRKPYTFPGG-SGTVLRNYKRVAEVWMDEYKEYFYKARPE 267


>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.
          Length = 565

 Score = 27.0 bits (61), Expect = 0.52
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 2   CGGVLEIATCSHVGHVFRKSTPYT 25
            GG L+IA    VGH+F+  T Y+
Sbjct: 394 GGGTLKIARGIEVGHIFQLGTKYS 417


>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
          Length = 255

 Score = 25.4 bits (56), Expect = 2.0
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 3   GGVLEIATCSHVGHVFRKSTPYTFPGGTSNI 33
           GG LE+A+ +H+  V  +ST +  P G   I
Sbjct: 105 GGGLELASAAHI-RVADESTYFALPEGQRGI 134


>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
          Length = 478

 Score = 25.2 bits (55), Expect = 2.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 5   VLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYY 54
           V+EIA C  +    RK+   T     +  V + NA   E  LD++  FY+
Sbjct: 238 VIEIAPCPSISDNLRKTMGVT-AVAAAKAVGYTNAGTIEFLLDDYNRFYF 286


>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
           Provisional.
          Length = 493

 Score = 25.0 bits (55), Expect = 3.0
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 2   CGGVLEIATCSHVGHVFRKSTPYTFP 27
             G     T SH   V  KST  +F 
Sbjct: 420 YHGKYGFDTFSHPKPVLNKSTGNSFD 445


>gnl|CDD|181342 PRK08271, PRK08271, anaerobic ribonucleoside triphosphate
           reductase; Provisional.
          Length = 623

 Score = 25.0 bits (55), Expect = 3.1
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 19  RKSTPYTFPGGTSNIVNHNNARLAEVWLD 47
           R+    TFP  T+ ++  +     E + D
Sbjct: 271 REKAMLTFPVVTAALLTDDGKCKDEDFAD 299


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,221,787
Number of extensions: 213663
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 6
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)