RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy738
         (62 letters)



>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
           glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
           musculus} SCOP: b.42.2.1 c.68.1.17
          Length = 472

 Score = 64.4 bits (156), Expect = 2e-14
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 1   MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPEN 60
            CGG LEI TCSHVGHVFRK+TPYTFPGGT  I+N NN RLAEVW+DE+K+F+Y I+P  
Sbjct: 242 QCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGV 301

Query: 61  M 61
            
Sbjct: 302 T 302


>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
           rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
           PDB: 2d7r_A*
          Length = 570

 Score = 63.7 bits (154), Expect = 3e-14
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 1   MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPEN 60
           MCGG +E   CS VGH++RK  PY  P G S  +  N  R+AEVW+DE+  + Y   PE 
Sbjct: 322 MCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS--LARNLKRVAEVWMDEYAEYIYQRRPEY 379


>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
           protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
           UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
          Length = 501

 Score = 60.6 bits (146), Expect = 4e-13
 Identities = 36/61 (59%), Positives = 41/61 (67%)

Query: 1   MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPEN 60
            CGG LEI  CS VGHVFRK  PYTFPGG+  +   N  R AEVW+DE+K+FYYA  P  
Sbjct: 274 QCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSA 333

Query: 61  M 61
            
Sbjct: 334 R 334


>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
           CD172B antigen, structural genomics, NPPSFA; NMR {Homo
           sapiens}
          Length = 136

 Score = 25.3 bits (56), Expect = 1.2
 Identities = 4/25 (16%), Positives = 5/25 (20%), Gaps = 2/25 (8%)

Query: 8   IAT--CSHVGHVFRKSTPYTFPGGT 30
             T  C            +    GT
Sbjct: 91  AGTYYCVKFRKGSPDDVEFKSGAGT 115


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.2 bits (52), Expect = 3.5
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 13/46 (28%)

Query: 20  KSTPYT-FPGGTSNIVNHNNARLAEVWLDEWKHFY--YAINPENMI 62
            +     F GG  N          + + +E +  Y  Y +   ++I
Sbjct: 153 NAQLVAIF-GGQGNT---------DDYFEELRDLYQTYHVLVGDLI 188


>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron,
          iron-sulfur, metal-binding, electron transport; 2.01A
          {Rhodopseudomonas palustris}
          Length = 126

 Score = 23.4 bits (51), Expect = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query: 2  CGGVLEIATCSHV 14
          CGG    ATC HV
Sbjct: 60 CGGACACATC-HV 71


>3nqp_A SUSD superfamily protein; structural genomics, joint center for
          structural genomics, J protein structure initiative,
          PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
          Length = 514

 Score = 23.6 bits (51), Expect = 5.0
 Identities = 3/31 (9%), Positives = 10/31 (32%)

Query: 27 PGGTSNIVNHNNARLAEVWLDEWKHFYYAIN 57
           G ++  +   N       + ++   +  I 
Sbjct: 63 MGVSNGDIILQNFDETHTGVSKFGDLFGRIT 93


>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel,
          homodimer; NMR {Paramecium bursaria chlorella virus 1}
          SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
          Length = 119

 Score = 23.0 bits (50), Expect = 8.0
 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)

Query: 17 VFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKH--FYYAI 56
          +F +        G   I NH+    A   L         + I
Sbjct: 51 LFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTI 92


>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn
           binding, metal-binding, oxidoreductase; NMR
           {Methanothermobacter thermautotrophicusorganism_taxid}
          Length = 151

 Score = 22.9 bits (50), Expect = 8.4
 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)

Query: 9   ATC-SHVGHVF 18
           A C +H+GHVF
Sbjct: 114 ARCDAHLGHVF 124


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,068,015
Number of extensions: 45619
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 10
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)