RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy738
         (62 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 70.7 bits (172), Expect = 3e-17
 Identities = 43/59 (72%), Positives = 50/59 (84%)

Query: 1   MCGGVLEIATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARLAEVWLDEWKHFYYAINPE 59
            CGG LEI TCSHVGHVFRK+TPYTFPGGT  I+N NN RLAEVW+DE+K+F+Y I+P 
Sbjct: 235 QCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPG 293


>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
           coli [TaxId: 562]}
          Length = 416

 Score = 23.8 bits (51), Expect = 1.7
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 8   IATCSHVGHVFRKSTPYTFPGGTSNIVNHNNARL----AEVWLDEWKHF 52
           I        +++K     FPGG    + H  A       E    E+K +
Sbjct: 238 ILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTY 286


>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 261

 Score = 23.4 bits (50), Expect = 2.1
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 27 PGGTSNIVNHNNARLAEVWLDEWKHFYYAINPENM 61
          P      +   +  LA++  DEW      +NP  M
Sbjct: 59 PAK--KPLVAPSRALADLLRDEWDAQKEVVNPVVM 91


>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
          cysN/C, EF-Tu domain G-like domain {Pseudomonas
          syringae pv. tomato [TaxId: 323]}
          Length = 222

 Score = 22.5 bits (47), Expect = 4.8
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 2/18 (11%)

Query: 5  VLEIATCSHVGHVFRKST 22
          +L   TC +V     KST
Sbjct: 9  MLRFLTCGNVDD--GKST 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,596
Number of extensions: 9518
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 4
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)