Query psy7380
Match_columns 72
No_of_seqs 93 out of 95
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 16:45:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6f_A T-box transcription fac 99.3 1.2E-13 4.2E-18 97.5 -1.1 27 10-36 166-192 (193)
2 4a04_A T-box transcription fac 99.2 5.8E-13 2E-17 94.6 -1.1 22 10-31 182-203 (203)
3 2x6u_A T-box transcription fac 99.2 7.1E-13 2.4E-17 94.4 -1.8 26 10-35 169-194 (203)
4 1xbr_A Protein (T protein); co 99.1 1.5E-12 5.3E-17 91.5 -2.1 23 10-32 158-180 (184)
5 3lkm_A MHCK-A, myosin heavy ch 65.7 2.1 7.2E-05 32.4 1.2 15 14-28 41-55 (307)
6 3vjz_A DMP19, putative unchara 24.6 14 0.00046 25.9 -0.3 16 20-35 76-91 (166)
7 1hdf_A Spherulin 3A; structura 20.2 33 0.0011 21.2 0.8 18 9-26 85-102 (102)
8 2ok3_A Peptidyl-prolyl CIS-tra 12.5 92 0.0031 20.3 1.6 16 11-26 145-160 (161)
9 3rfe_A Platelet glycoprotein I 9.7 1.1E+02 0.0038 18.6 1.2 14 13-26 55-68 (130)
10 3bbo_S Ribosomal protein L20; 9.7 1.1E+02 0.0038 20.1 1.2 19 25-43 20-39 (119)
No 1
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=99.30 E-value=1.2e-13 Score=97.51 Aligned_cols=27 Identities=56% Similarity=0.812 Sum_probs=21.3
Q ss_pred hhhhccceeeecCCccccccccCCCch
Q psy7380 10 AYYKEITKLKIDSNPFAKGFRDSSRLT 36 (72)
Q Consensus 10 ~qnqqIT~LKID~NPFAKgFRd~s~~~ 36 (72)
-||++||+||||+|||||||||++.++
T Consensus 166 YQN~~It~LKi~~NpFAkgFr~~~~~~ 192 (193)
T 1h6f_A 166 YQNDKITQLKIDNNPFAKGFRDTGNGR 192 (193)
T ss_dssp CSCHHHHHHHHHHCGGGGGGCC-----
T ss_pred cCchhhhhhhhcCCCCCcccccCCCCC
Confidence 489999999999999999999998754
No 2
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=99.22 E-value=5.8e-13 Score=94.64 Aligned_cols=22 Identities=68% Similarity=0.966 Sum_probs=21.1
Q ss_pred hhhhccceeeecCCcccccccc
Q psy7380 10 AYYKEITKLKIDSNPFAKGFRD 31 (72)
Q Consensus 10 ~qnqqIT~LKID~NPFAKgFRd 31 (72)
-||++||+|||++|||||||||
T Consensus 182 YQN~~It~LKi~~NPFAkgFrd 203 (203)
T 4a04_A 182 YQNHRITQLKIASNPFAKGFRD 203 (203)
T ss_dssp CCCHHHHHHHHHHCGGGGGGCC
T ss_pred cCCHHHHHHHhccCCCCcccCC
Confidence 4899999999999999999997
No 3
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=99.20 E-value=7.1e-13 Score=94.37 Aligned_cols=26 Identities=54% Similarity=0.857 Sum_probs=13.3
Q ss_pred hhhhccceeeecCCccccccccCCCc
Q psy7380 10 AYYKEITKLKIDSNPFAKGFRDSSRL 35 (72)
Q Consensus 10 ~qnqqIT~LKID~NPFAKgFRd~s~~ 35 (72)
-||++||+||||+|||||||||++..
T Consensus 169 YQN~~It~LKi~~NPFAkgFR~~~~~ 194 (203)
T 2x6u_A 169 YQNHKITQLKIENNPFAKGFRGSDDM 194 (203)
T ss_dssp CCSHHHHHHHHHHC------------
T ss_pred ecchhhhhhhhccCCCccccccCccc
Confidence 48999999999999999999998653
No 4
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=99.14 E-value=1.5e-12 Score=91.47 Aligned_cols=23 Identities=57% Similarity=0.756 Sum_probs=21.8
Q ss_pred hhhhccceeeecCCccccccccC
Q psy7380 10 AYYKEITKLKIDSNPFAKGFRDS 32 (72)
Q Consensus 10 ~qnqqIT~LKID~NPFAKgFRd~ 32 (72)
-||++||+||||+|||||||||.
T Consensus 158 YQN~~It~LKi~~NpFAkgFr~~ 180 (184)
T 1xbr_A 158 YQNEEITALKIKHNPFAKAFLDA 180 (184)
T ss_dssp CCCHHHHHHHHHHCGGGHHHHHH
T ss_pred cCChhHhhhhhccCCCCcccCCC
Confidence 58999999999999999999986
No 5
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold, ATP-binding, nucleotide- binding, serine/threonine-protein kinase; HET: AMP; 1.60A {Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A* 3pdt_A*
Probab=65.69 E-value=2.1 Score=32.39 Aligned_cols=15 Identities=47% Similarity=0.809 Sum_probs=13.6
Q ss_pred ccceeeecCCccccc
Q psy7380 14 EITKLKIDSNPFAKG 28 (72)
Q Consensus 14 qIT~LKID~NPFAKg 28 (72)
-.+.+||+.-|||+|
T Consensus 41 ~~i~vk~e~~PFa~G 55 (307)
T 3lkm_A 41 LSMKLKVERKPFAEG 55 (307)
T ss_dssp EEEEEEECSSCSEEC
T ss_pred eeEEEEecccccccc
Confidence 468999999999998
No 6
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=24.65 E-value=14 Score=25.91 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=12.6
Q ss_pred ecCCccccccccCCCc
Q psy7380 20 IDSNPFAKGFRDSSRL 35 (72)
Q Consensus 20 ID~NPFAKgFRd~s~~ 35 (72)
|=.|||||+.|.=+..
T Consensus 76 if~Np~akalr~wG~~ 91 (166)
T 3vjz_A 76 IFRNPLADSLRRWKIK 91 (166)
T ss_dssp HHTSSHHHHHHTTTCC
T ss_pred HHhChHHHHHHHhCch
Confidence 4479999999986654
No 7
>1hdf_A Spherulin 3A; structural protein, crystallins, eye lens, domain interactions, tyrosine corner; 2.35A {Physarum polycephalum} SCOP: b.11.1.1 PDB: 1ag4_A
Probab=20.20 E-value=33 Score=21.24 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.1
Q ss_pred hhhhhccceeeecCCccc
Q psy7380 9 QAYYKEITKLKIDSNPFA 26 (72)
Q Consensus 9 ~~qnqqIT~LKID~NPFA 26 (72)
.--|.+|+-|||-.+++|
T Consensus 85 ~g~Nd~ISSi~v~~~~~~ 102 (102)
T 1hdf_A 85 RNLNDAISSMIVATFESA 102 (102)
T ss_dssp GTCTTCCCEEEEEECC--
T ss_pred cCCcccceEEEEeccCCC
Confidence 457999999999999886
No 8
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=12.51 E-value=92 Score=20.30 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.3
Q ss_pred hhhccceeeecCCccc
Q psy7380 11 YYKEITKLKIDSNPFA 26 (72)
Q Consensus 11 qnqqIT~LKID~NPFA 26 (72)
+.-.|+...|-.|||.
T Consensus 145 ~~v~I~~~~i~~~Pf~ 160 (161)
T 2ok3_A 145 NDVHIKDITIHANPFA 160 (161)
T ss_dssp SCCBEEEEEEECCSCC
T ss_pred CCeEEEEEEEecCCCC
Confidence 4457899999999996
No 9
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=9.74 E-value=1.1e+02 Score=18.56 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=11.6
Q ss_pred hccceeeecCCccc
Q psy7380 13 KEITKLKIDSNPFA 26 (72)
Q Consensus 13 qqIT~LKID~NPFA 26 (72)
.+++.|.|..|||.
T Consensus 55 ~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 55 PALRTAHLGANPWR 68 (130)
T ss_dssp TTCCEEECCSSCCB
T ss_pred cccCEEEecCCCee
Confidence 35788999999995
No 10
>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=9.67 E-value=1.1e+02 Score=20.14 Aligned_cols=19 Identities=47% Similarity=0.576 Sum_probs=12.1
Q ss_pred cccccccC-CCchhhhhhhh
Q psy7380 25 FAKGFRDS-SRLTEFERQNV 43 (72)
Q Consensus 25 FAKgFRd~-s~~~~~~~eai 43 (72)
+|||||-. +..-+...+++
T Consensus 20 ~AkGfrG~~s~~~r~A~q~v 39 (119)
T 3bbo_S 20 FASSFRGAHSRLTRTIAQQK 39 (119)
T ss_dssp HCSSCSSSTTSSHHHHHHHH
T ss_pred HhccccccccccHHHHHHHH
Confidence 69999987 44444444443
Done!