RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7380
(72 letters)
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 37.8 bits (87), Expect = 6e-05
Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 10 AY-YKEITKLKIDSNPFAKGFRDSSR 34
AY +IT+LKID+NPFAKGFRD+
Sbjct: 165 AYQNDKITQLKIDNNPFAKGFRDTGN 190
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 37.4 bits (86), Expect = 8e-05
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 YYKEITKLKIDSNPFAKGFRDSSR 34
+EIT LKI NPFAK F D+
Sbjct: 159 QNEEITALKIKHNPFAKAFLDAKE 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 2e-04
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 7 NNQAYYKEITKLKIDSNPFAKGFRDSS--RLTEFERQNVLFDRHFMGRI-----LRD-EY 58
N Y++E+ L + S L+E R + ++ F + L +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 59 PPDTGKVVNTLYSC 72
PD +++ SC
Sbjct: 225 TPDKDYLLSIPISC 238
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 36.4 bits (83), Expect = 2e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 11 YYKEITKLKIDSNPFAKGFRD 31
IT+LKI SNPFAKGFRD
Sbjct: 183 QNHRITQLKIASNPFAKGFRD 203
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 35.5 bits (81), Expect = 4e-04
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 13 KEITKLKIDSNPFAKGFRDSSR 34
+IT+LKI++NPFAKGFR S
Sbjct: 172 HKITQLKIENNPFAKGFRGSDD 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.16
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 27 KGFRDSSRLTEFERQNVLFDRHFMGRILRDEYPP--DTGKVVNTL 69
K R+T F V D F+ + +R + +G ++NTL
Sbjct: 482 KNIEHPERMTLFRM--VFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Score = 26.4 bits (57), Expect = 0.78
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 31/88 (35%)
Query: 1 MFNDDNNNQAYYKEITKLKIDSNPFAKGF-----RDSSR--LT------------EFERQ 41
M + +Q YK+I L + + F F +D + L+
Sbjct: 7 MDFETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 42 NVLFD----------RHFMGRILRDEYP 59
LF + F+ +LR Y
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYK 92
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 26.3 bits (58), Expect = 0.72
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 7 NNQAYYKEITKLKIDSNPFAKGFRDS----SRLTEFERQNVL 44
N +E +K+D + G +D+ S+L++ E + L
Sbjct: 36 ENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 0.99
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 39 ERQNVLFDRHFMGRI-LRDEYPPDTG 63
E+Q + + + L Y D+
Sbjct: 18 EKQAL---KKLQASLKL---YADDSA 37
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP:
d.26.1.1 PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 24.2 bits (53), Expect = 4.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 18 LKIDSNPFAKGFRD-----SSRLTEFERQNVL 44
+ ++ AKG +D LTE + ++VL
Sbjct: 31 IDVNPEAMAKGMQDAMSGAQLALTEQQMKDVL 62
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase,
metal binding-site, hexamer, cytoplasm, arginine
metabolism; 2.10A {Lactobacillus hilgardii}
Length = 359
Score = 23.7 bits (52), Expect = 5.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 22 SNPFAKGFRDSSRLTEFERQNVLFDRHF 49
S+ D ++T+ RQNV R
Sbjct: 4 SHHHHHHGDDDDKMTKDFRQNVFQGRSV 31
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 23.5 bits (50), Expect = 8.3
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 5 DNNNQAYYKEITKLKIDSNP--FAKGFRDSSRLTEFERQ-NVLFDRHFMGRILRDEYPPD 61
E+ KL ++ + + + + D H + R P
Sbjct: 47 KLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGL 106
Query: 62 TGKVVNTL 69
V+ +
Sbjct: 107 PSYVITEI 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,120,968
Number of extensions: 51931
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 14
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)