RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7380
         (72 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 46.4 bits (110), Expect = 1e-08
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 14  EITKLKIDSNPFAKGFRDSSR 34
           EIT LKI  NPFAK F D+  
Sbjct: 162 EITALKIKHNPFAKAFLDAKE 182


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score = 42.6 bits (100), Expect = 4e-07
 Identities = 15/18 (83%), Positives = 18/18 (100%)

Query: 14  EITKLKIDSNPFAKGFRD 31
           +IT+LKID+NPFAKGFRD
Sbjct: 167 KITQLKIDNNPFAKGFRD 184


>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid
           dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 148

 Score = 28.2 bits (63), Expect = 0.054
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 3   NDDNNNQAYYKEITKLKIDSNP----FAKGFRDSSRLTEFERQ-NVLFDRHFMGRILR 55
            D  +   Y + + +L  D        A+G R+S +  E E+      D+    R+  
Sbjct: 76  KDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGI 133


>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 175

 Score = 25.3 bits (55), Expect = 0.61
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 23  NPFAKGFRDSSRLTEFERQNVLFDRHFMGRIL 54
           +      R+  R+T + R + L D    G + 
Sbjct: 84  SAHFGKTRNEKRITRWGRGSPLQDPENTGALT 115


>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat
           (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
          Length = 167

 Score = 24.0 bits (52), Expect = 1.8
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 9/62 (14%)

Query: 3   NDDNNNQAYYKEITKLKIDSNP----FAKGFRDSSR-----LTEFERQNVLFDRHFMGRI 53
            D      +   +  ++   N      A+G  +            +      DR ++ RI
Sbjct: 94  EDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRI 153

Query: 54  LR 55
             
Sbjct: 154 SI 155


>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 23.3 bits (50), Expect = 3.8
 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 5   DNNNQAYYKEITKLKIDSNPFAKGFRDS 32
           ++NN++  + +  L I    + +  R S
Sbjct: 276 NHNNKSVNESLNNLFITEEDY-QALRTS 302


>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 22.8 bits (49), Expect = 5.3
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 9/62 (14%)

Query: 3   NDDNNNQAYYKEITKLKIDSNP----FAKGFRDSSRLTEFERQ-----NVLFDRHFMGRI 53
            D      + + + K++   N      A+G  +      F+           DR +  RI
Sbjct: 88  EDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRI 147

Query: 54  LR 55
             
Sbjct: 148 SF 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,046
Number of extensions: 10529
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)