BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7383
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/345 (76%), Positives = 298/345 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 9 MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 68
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 69 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 128
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
TLC ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVAL
Sbjct: 129 TLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVAL 188
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 189 RAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 248
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 249 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 308
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 309 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHL 353
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust.
Identities = 263/345 (76%), Positives = 297/345 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 9 MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 68
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 69 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 128
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
TLC ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GL R+G AVAL
Sbjct: 129 TLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVAL 188
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 189 RAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 248
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 249 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 308
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 309 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHL 353
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 556 bits (1433), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/345 (76%), Positives = 297/345 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRD ++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 9 MSGVRPPIMNGPMHPRPLVALLDGRDXTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 68
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 69 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 128
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
TLC ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVAL
Sbjct: 129 TLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVAL 188
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 189 RAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 248
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 249 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 308
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 309 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHL 353
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 252/333 (75%), Positives = 289/333 (86%)
Query: 25 MQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTK 84
M RPLVALLDGRDC++EMPILKD+ATVAFCDAQST EIHEKVLNEAVGA+M+HTI LT+
Sbjct: 2 MHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTR 61
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT 144
EDLEKFK LR+IVRIGSG DN+D+KAAGELGIAVCN+P VEE AD+T+C ILNLYRR
Sbjct: 62 EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 145 YWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204
WL +REG + EQ+RE ASG ARIRG+TLG++G GR G AVA+RAKAFGF+VIFY
Sbjct: 122 TWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY 181
Query: 205 DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
DPYL DGIE+SLG+ RVYTLQDLL+QSDCVSLHC LNEHNHHLIN+FTIKQMR GAFLVN
Sbjct: 182 DPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVN 241
Query: 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324
ARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTPH A+YSE +
Sbjct: 242 AARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQA 301
Query: 325 CTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
E+RE AA+EIRRAI GRIP+ LRNCVNKE+F
Sbjct: 302 SLEMREAAATEIRRAITGRIPESLRNCVNKEFF 334
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 537 bits (1384), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/326 (77%), Positives = 285/326 (87%)
Query: 29 PLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLE 88
PLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGALM+HTI LT+EDLE
Sbjct: 22 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 81
Query: 89 KFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLA 148
KFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+TLC ILNLYRR WL
Sbjct: 82 KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLH 141
Query: 149 NMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208
+REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAKAFGFNV+FYDPYL
Sbjct: 142 QALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL 201
Query: 209 PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268
DG+E++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT+KQMR GAFLVNTARG
Sbjct: 202 SDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARG 261
Query: 269 GLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328
GLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTPHAA+YSE + E+
Sbjct: 262 GLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM 321
Query: 329 REMAASEIRRAIVGRIPDCLRNCVNK 354
RE AA EIRRAI GRIPD L+NCVNK
Sbjct: 322 REEAAREIRRAITGRIPDSLKNCVNK 347
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 23/265 (8%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+T+ +E L++I R G G+DNIDV+AA E GI V N P VA+ + L+ ++
Sbjct: 56 VTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVA 115
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R+ + +REG ++ A G + G T+GI+G GRIG VA A A G N+
Sbjct: 116 RKIAFADRKMREGV------WAKKEAMGI-ELEGKTIGIIGFGRIGYQVAKIANALGMNI 168
Query: 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
+ YDPY + K + + L+ LL +SD V++H L E +HLINE +K M+ A
Sbjct: 169 LLYDPYPNEERAKEVN-GKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAP-----NILCTPH 316
L+NT+RG +VD ++L ALK+G I A LDV E EP KD P N++ TPH
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLP------KDHPLTKFDNVVLTPH 281
Query: 317 AAFYSEASCTELREMAASEIRRAIV 341
AS E +E A E+ +V
Sbjct: 282 IG----ASTVEAQERAGVEVAEKVV 302
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 141/286 (49%), Gaps = 24/286 (8%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT+E L K L++I G D+ID+ + GI V ++P Y E VA+ T IL L
Sbjct: 54 LTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLV 113
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
+R + + V KK + A R+ TLG++G GRIGS VA AFG V
Sbjct: 114 KRLKRIEDRV---KKLNFSQDSEILARELNRL---TLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 202 IFYDPYLPDGIEKSLGLTRVYT-LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ YD + + K G VYT L +LL +SD +SLH + HH INE I + G
Sbjct: 168 LCYDVVKREDL-KEKGC--VYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGV 224
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQ---------GNLKD---- 307
+L+NTARG +VD D+L A ++G+ LDV E E + + NLK
Sbjct: 225 YLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELA 284
Query: 308 -APNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCV 352
N++ TPH A+Y++ S +RE ++ + G + N V
Sbjct: 285 CKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFV 330
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 167/333 (50%), Gaps = 19/333 (5%)
Query: 28 RPLVALL--DGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKE 85
RP V +L R+ E+ DV + + + V+ G ++ T +T+E
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELK----GVIGRFDGIIVSPTTKITRE 57
Query: 86 DLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTY 145
LE + L++I +G DNID++ A + GI V V G E VA+ T+ LI+NL R+ +
Sbjct: 58 VLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIH 117
Query: 146 WLANMVREGKKFTGPEQLREAASGCARIR---GDTLGIVGLGRIGSAVALRAKAFGFNVI 202
+ +R G+ E + +G RI G +GI+G+G IG A+A R FG +
Sbjct: 118 YADKFIRRGE----WESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLY 173
Query: 203 FYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262
++ + +EK L R + +LL +SD V L L +H+INE +K++ G +L
Sbjct: 174 YWSRHRKVNVEKELK-ARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL-EGKYL 231
Query: 263 VNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSE 322
VN RG LVD+ ++ A+KQG+++ A DV E EP + K + TPH A +
Sbjct: 232 VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHE-LFKYEWETVLTPHYAGLAL 290
Query: 323 ASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355
+ ++ A + + + G +P+ + VNKE
Sbjct: 291 EAQEDVGFRAVENLLKVLRGEVPE---DLVNKE 320
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 132/256 (51%), Gaps = 4/256 (1%)
Query: 92 TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
+L++ G+G D +D+ A E G+A N G G +D L LIL+++R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 152 REGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA-KAFGFNVIFYDPYLPD 210
R G T E RG LG VGLG I +A +A G +++YD D
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD 199
Query: 211 G-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269
EK+LG RV +L++L +SDCVS+ + HHLI+E M+PG+ +VNTARG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329
++ D+L AALK G++ +A LDVHE EP NV + L + ++ T H + + E
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEP-NVSK-ELIEMKHVTLTTHIGGVAIETFHEFE 317
Query: 330 EMAASEIRRAIVGRIP 345
+ + I R ++ P
Sbjct: 318 RLTMTNIDRFLLQGKP 333
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 4/256 (1%)
Query: 92 TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
+L++ G+G D +D+ A E G+A N G G +D L LIL+++R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 152 REGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA-KAFGFNVIFYDPYLPD 210
R G T E RG LG VGLG I +A +A G +++YD D
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD 199
Query: 211 G-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269
EK+LG RV +L++L +SDCVS+ + HHLI+E M+PG+ +VNTARG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329
++ D+L AALK G++ +A LDVHE EP L + ++ T H + + E
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPQ--VSKELIEMKHVTLTTHIGGVAIETFHEFE 317
Query: 330 EMAASEIRRAIVGRIP 345
+ + I R ++ P
Sbjct: 318 RLTMTNIDRFLLQGKP 333
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 4/256 (1%)
Query: 92 TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
+L++ G+G D +D+ A E G+A N G G +D L LIL+++R +
Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139
Query: 152 REGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA-KAFGFNVIFYDPYLPD 210
R G T E RG LG VGLG I +A +A G +++YD D
Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD 199
Query: 211 G-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269
EK+LG RV +L++L +SDCVS+ + HHLI+E M+PG+ +VNTARG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329
++ D+L AALK G++ +A LDVHE EP L + ++ T H + + E
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPQ--VSKELIEMKHVTLTTHIGGVAIETFHEFE 317
Query: 330 EMAASEIRRAIVGRIP 345
+ + I R ++ P
Sbjct: 318 RLTMTNIDRFLLQGKP 333
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 148/298 (49%), Gaps = 30/298 (10%)
Query: 70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEV 129
EA L+ + E L L+I+ R G G+DN+DV AA G+ V N P +
Sbjct: 44 EADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSA 103
Query: 130 ADTTLCLILNLYRRTYWLANMVRE----GKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185
A+ L L+L R+ +RE F+G E I G T+G+VGLGR
Sbjct: 104 AEHALALLLAASRQIPAADASLREHTWKRSSFSGTE-----------IFGKTVGVVGLGR 152
Query: 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245
IG VA R AFG V+ YDPY+ LG+ + +L DLL ++D +S+H
Sbjct: 153 IGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGI-ELLSLDDLLARADFISVHLPKTPETA 211
Query: 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL 305
LI++ + + +PG +VN ARGGLVD+ +LA A+ G +RAA LDV +EP L
Sbjct: 212 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT--DSPL 269
Query: 306 KDAPNILCTPHAAFYSEASCTELREMA----ASEIRRAIVGR-IPDCLR---NCVNKE 355
+ ++ TPH AS E ++ A A +R A+ G +PD + VN+E
Sbjct: 270 FELAQVVVTPHLG----ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEE 323
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 148/298 (49%), Gaps = 30/298 (10%)
Query: 70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEV 129
EA L+ + E L L+I+ R G G+DN+DV AA G+ V N P +
Sbjct: 43 EADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSA 102
Query: 130 ADTTLCLILNLYRRTYWLANMVRE----GKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185
A+ L L+L R+ +RE F+G E I G T+G+VGLGR
Sbjct: 103 AEHALALLLAASRQIPAADASLREHTWKRSSFSGTE-----------IFGKTVGVVGLGR 151
Query: 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245
IG VA R AFG V+ YDPY+ LG+ + +L DLL ++D +S+H
Sbjct: 152 IGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGI-ELLSLDDLLARADFISVHLPKTPETA 210
Query: 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL 305
LI++ + + +PG +VN ARGGLVD+ +LA A+ G +RAA LDV +EP L
Sbjct: 211 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT--DSPL 268
Query: 306 KDAPNILCTPHAAFYSEASCTELREMA----ASEIRRAIVGR-IPDCLR---NCVNKE 355
+ ++ TPH AS E ++ A A +R A+ G +PD + VN+E
Sbjct: 269 FELAQVVVTPHLG----ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEE 322
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 22/273 (8%)
Query: 68 LNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVE 127
L + G ++ +T + + + L+++ R G+GVDN+D++AA GI V N P
Sbjct: 65 LQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 124
Query: 128 EVADTTLCLILNLYRRTYWLANMVREGK----KFTGPEQLREAASGCARIRGDTLGIVGL 183
A+ T +I+ L R+ +++GK KF G E + G TLGI+GL
Sbjct: 125 SAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE-----------LNGKTLGILGL 173
Query: 184 GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH 243
GRIG VA R ++FG I YDP + + S G+ ++ L+++ D +++H L
Sbjct: 174 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPS 232
Query: 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG 303
L+N+ T Q + G +VN ARGG+VD+ +L AL+ G+ AALDV EP
Sbjct: 233 TTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPR--DR 290
Query: 304 NLKDAPNILCTPHAAFYSEASCTELREMAASEI 336
L D N++ PH AS E + EI
Sbjct: 291 ALVDHENVISCPHLG----ASTKEAQSRCGEEI 319
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 118/249 (47%), Gaps = 26/249 (10%)
Query: 89 KFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLA 148
KF T+R + G DNID+ A + GI + NVP Y +A+ L L Y L
Sbjct: 70 KFLTIRNV-----GTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTL------YLLR 118
Query: 149 NMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208
NM + + + + + T+G++G G IG K FG VI YDPY
Sbjct: 119 NMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP 178
Query: 209 PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268
G +L+DL QSD + LH E N H+INE M+PGA ++NTAR
Sbjct: 179 MKGDHPDFDYV---SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 235
Query: 269 GLVDDDSLAAALKQGRIRAAALDVHESEPYNVF----QGNLKD--------APNILCTPH 316
L+D ++ + LK G++ +D +E E ++ G+ KD PN++ +PH
Sbjct: 236 NLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH 295
Query: 317 AAFYSEASC 325
A+Y+E +
Sbjct: 296 IAYYTETAV 304
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 125/243 (51%), Gaps = 17/243 (6%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161
G + +++KAA + GI V N P VA+ + I+ L RR + + G G E
Sbjct: 90 GTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG----GWE 145
Query: 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV 221
+ A G +RG TLGIVG G IGS V A++ G V +YD D ++ +
Sbjct: 146 K---TAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDT--SDKLQYG-NVKPA 199
Query: 222 YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281
+L +LL SD VSLH ++ LI E +++M+ GAFL+N ARG VD ++LA L+
Sbjct: 200 ASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ 259
Query: 282 QGRIRAAALDVHESEPYN---VFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRR 338
+G + AA+DV EP + F L+ N++ TPH S E +E +E+ R
Sbjct: 260 EGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG----GSTEEAQERIGTEVTR 315
Query: 339 AIV 341
+V
Sbjct: 316 KLV 318
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 121/262 (46%), Gaps = 29/262 (11%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKF---T 158
GVDNID+ A ELG + NVP Y +A+ A ++R+ K+
Sbjct: 80 GVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQ----------AARVLRQDKRMDEKM 129
Query: 159 GPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGL 218
LR A + +R +G+VG G IG + FG VI YD + +EK
Sbjct: 130 AKRDLRWAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKG-- 187
Query: 219 TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278
V +L DL Q+D +SLH N H+IN+ +I +M+ G +VN +RG LVD D++
Sbjct: 188 YYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIR 247
Query: 279 ALKQGRIRAAALDVHESEPYNVFQ-------------GNLKDAPNILCTPHAAFYSEASC 325
L G+I +D +E E VF +L D PN+L TPH AFY+ +
Sbjct: 248 GLDSGKIFGFVMDTYEDE-VGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAV 306
Query: 326 TELREMAASEIRRAIVGRIPDC 347
+ A + + I G PD
Sbjct: 307 RNMVVKAFNNNLKLINGEKPDS 328
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 17/263 (6%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+TK+ +EK K L+II R G G+DNID + A + I V PG + + T+ L++
Sbjct: 58 VTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAA 117
Query: 142 RRTYWLANMVREG--KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199
R+ Y + + G KK G E + G T+GIVG GRIG+ V + A A G
Sbjct: 118 RKMYTSMALAKSGIFKKIEGLE-----------LAGKTIGIVGFGRIGTKVGIIANAMGM 166
Query: 200 NVIFYDPYLPDGIEKSLGL-TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
V+ YD + D EK+ + + +L++LL SD +SLH T+++ +I+ + M+
Sbjct: 167 KVLAYD--ILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE-PYNVFQGNLKDAPNILCTPHA 317
+VNT+R V+ +L +K+G++ A A DV +E P ++ L ++ T H
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 318 AFYSEASCTELREMAASEIRRAI 340
++ + + EM + A+
Sbjct: 285 GAQTKEAQKRVAEMTTQNLLNAM 307
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 134/270 (49%), Gaps = 5/270 (1%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+ KE E LRI+ G DNID++ A + GI V N P + AD L+L
Sbjct: 57 IDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATA 116
Query: 142 RRTYWLANMVREGK-KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFN 200
R VR G+ K G + G + G T+GI+GLGRIG A+A RAK F
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYD-VYGKTIGIIGLGRIGQAIAKRAKGFNMR 175
Query: 201 VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+++Y + +E+ L L+DLL +SD V L L +HLINE +K M+ A
Sbjct: 176 ILYYSRTRKEEVERELN-AEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY 320
L+N ARG +VD ++L ALK+G I A LDV E EPY + L N++ TPH
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY--YNEELFKLDNVVLTPHIGSA 292
Query: 321 SEASCTELREMAASEIRRAIVGRIPDCLRN 350
S + + E+ A + G IP L N
Sbjct: 293 SFGAREGMAELVAKNLIAFKRGEIPPTLVN 322
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 112/233 (48%), Gaps = 23/233 (9%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161
GVDNID+ A ELG + NVP Y +A+ + R+ + V
Sbjct: 80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKV-------ARH 132
Query: 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV 221
LR A + +R +G+VG G IG + FG VI YD + +EK V
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKG--YYV 190
Query: 222 YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281
+L DL Q+D +SLH N H+IN+ +I +M+ +VN +RG LVD D++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 282 QGRIRAAALDVHESEPYNVFQGNLK-----DA--------PNILCTPHAAFYS 321
G+I A+DV+E E +F + + DA PN+L TPH AFY+
Sbjct: 251 SGKIFGYAMDVYEGE-VGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYT 302
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 11/235 (4%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
L+ E EK +L II G G D +D+ A I V PG ++VAD + L L +
Sbjct: 83 LSNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVL 142
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
RR +VREG+ G EQL S +G +G++GLG+IG A+A RA+AFG +V
Sbjct: 143 RRVGDGDRLVREGRWAAG-EQLPLGHS----PKGKRIGVLGLGQIGRALASRAEAFGXSV 197
Query: 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
+++ G++ + V DL SD +++ + ++++ ++ + P
Sbjct: 198 RYWNRSTLSGVDWIAHQSPV----DLARDSDVLAVCVAASAATQNIVDASLLQALGPEGI 253
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
+VN ARG +VD+D+L ALK G I A LDV +EP + PN + PH
Sbjct: 254 VVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP--AIRSEFHTTPNTVLXPH 306
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161
GVDNID+ A ELG + NVP Y +A+ + R+ + V
Sbjct: 80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKV-------ARH 132
Query: 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV 221
LR A + +R +G+VG G IG + FG VI YD + +EK V
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKG--YYV 190
Query: 222 YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281
+L DL Q+D +SLH N H+IN+ +I +M+ +VN +RG LVD D++ L
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250
Query: 282 QGRIRAAALDVHESEPYNVFQGNLK-----DA--------PNILCTPHAAFYS 321
G+I A+DV+E E +F + + DA PN+L TP AFY+
Sbjct: 251 SGKIFGYAMDVYEGE-VGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYT 302
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT E + K K L++ + G G D++D+++A + + V V VA+ + +IL+L
Sbjct: 104 LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLV 163
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R R+G + + S + +G V GRIG AV R F ++
Sbjct: 164 RNYLPSHEWARKGGW-----NIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 218
Query: 202 IFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ D + LP+ +EK L LT T +D+ D V+L+C L+ H+IN+ T+K + GA
Sbjct: 219 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 278
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
++VNTARG L D D++A AL+ GR+ A DV +P
Sbjct: 279 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP 315
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT E + K K L++ + G G D++D+++A + + V V VA+ + +IL+L
Sbjct: 103 LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLV 162
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R R+G + + S + +G V GRIG AV R F ++
Sbjct: 163 RNYLPSHEWARKGGW-----NIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 217
Query: 202 IFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ D + LP+ +EK L LT T +D+ D V+L+C L+ H+IN+ T+K + GA
Sbjct: 218 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 277
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
++VNTARG L D D++A AL+ GR+ A DV +P
Sbjct: 278 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP 314
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT E + K K L++ + G G D++D+++A + + V V VA+ + +IL+L
Sbjct: 104 LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLV 163
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R R+G + + S + +G V GRIG AV R F ++
Sbjct: 164 RNYLPSHEWARKGGW-----NIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 218
Query: 202 IFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ D + LP+ +EK L LT T +D+ D V+L+C L+ H+IN+ T+K + GA
Sbjct: 219 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 278
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
++VNTARG L D D++A AL+ GR+ A DV +P
Sbjct: 279 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP 315
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 132/270 (48%), Gaps = 5/270 (1%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+ KE E LRI+ G DNID++ A + GI V N P + AD L+L
Sbjct: 57 IDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATA 116
Query: 142 RRTYWLANMVREGK-KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFN 200
R VR G+ K G + G + G T+GI+GLGRIG A+A RAK F
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYD-VYGKTIGIIGLGRIGQAIAKRAKGFNXR 175
Query: 201 VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+++Y + +E+ L L+DLL +SD V L L +HLINE +K + A
Sbjct: 176 ILYYSRTRKEEVERELN-AEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY 320
L+N ARG +VD ++L ALK+G I A LDV E EPY + L N++ TPH
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY--YNEELFKLDNVVLTPHIGSA 292
Query: 321 SEASCTELREMAASEIRRAIVGRIPDCLRN 350
S + E+ A + G IP L N
Sbjct: 293 SFGAREGXAELVAKNLIAFKRGEIPPTLVN 322
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 117/255 (45%), Gaps = 25/255 (9%)
Query: 93 LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVR 152
LRI+ G + I+ + + V NVP Y +A+ T+ + L R+ +
Sbjct: 76 LRIV-----GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMD 130
Query: 153 EGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI 212
FT P L I T+G++G+G IGSAVA A G VI YD
Sbjct: 131 HDHDFTWPSNLI-----SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF 185
Query: 213 EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272
E L T T+ L ++D VSLH L ++I E +K+M+ A+L+N ARG LVD
Sbjct: 186 EPFLTYTDFDTV---LKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVD 242
Query: 273 DDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA------------PNILCTPHAAFY 320
+L AL+ G I A LD E L D+ PN++ TPH+AFY
Sbjct: 243 TGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFY 302
Query: 321 SEASCTELREMAASE 335
+E S + ++ ++
Sbjct: 303 TETSIRNMVQICLTD 317
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 134/262 (51%), Gaps = 14/262 (5%)
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT 144
E +++ K L++I GVD++D++AA E GI V + PG E AD TL L+L + RR
Sbjct: 58 EVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRV 117
Query: 145 YWLANMVREG-KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF 203
A R+G K PE L TLG+VG+GRIG AVA RA AFG V+
Sbjct: 118 VEGAAYARDGLWKAWHPELLLGLDLQGL-----TLGLVGMGRIGQAVAKRALAFGMRVV- 171
Query: 204 YDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV 263
Y P + +L++LL ++D VSLH L H L+N + M+ GA L+
Sbjct: 172 YHARTPKPLPYPF-----LSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILL 226
Query: 264 NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323
NTARG LVD ++L AL+ G + A LDV + EP L PN + TPH
Sbjct: 227 NTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGH-PLYALPNAVITPHIGSAGRT 284
Query: 324 SCTELREMAASEIRRAIVGRIP 345
+ + E+A + + GR P
Sbjct: 285 TRERMAEVAVENLLAVLEGREP 306
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 19/241 (7%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT++ + + L I G + +D+ AA + GI V N P VA+ + +L L
Sbjct: 65 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 124
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R V E + A+G RG LGI+G G IG+ + + A++ G V
Sbjct: 125 RG-------VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 177
Query: 202 IFYDPYLPDGIEKSLGL---TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
FYD IE L L T+V L DLL SD VSLH N +++ I M+P
Sbjct: 178 YFYD------IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP 231
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGNLKDAPNILCTP 315
G+ L+N +RG +VD +LA AL + AA+DV +EP + F L + N+L TP
Sbjct: 232 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 291
Query: 316 H 316
H
Sbjct: 292 H 292
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 124/256 (48%), Gaps = 21/256 (8%)
Query: 82 LTKEDLEKFKTLRIIVRIG----SGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLI 137
+T++ L++ L+II + G +ID++A + G+ V G V A+ T L+
Sbjct: 61 VTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP-AELTWALV 119
Query: 138 LNLYRRTYWLANMVREG-------KKFTGPEQLREAASGCARI-RGDTLGIVGLGRIGSA 189
+ RR ++ G K T P G R+ +G TLGI G G+IG
Sbjct: 120 MAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNF-----GIGRVLKGQTLGIFGYGKIGQL 174
Query: 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249
VA +AFG NV+ + ++ G + L QSD +S+H LN+ +I
Sbjct: 175 VAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIIT 234
Query: 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN-LKDA 308
+ +M+P A VNT+R LV+++ + AL +GR AA+DV E+EP + QG+ L
Sbjct: 235 VADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP--ILQGHTLLRM 292
Query: 309 PNILCTPHAAFYSEAS 324
N +CTPH + S
Sbjct: 293 ENCICTPHIGYVERES 308
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 19/241 (7%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT++ + + L I G + +D+ AA + GI V N P VA+ + +L L
Sbjct: 65 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 124
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R V E + A+G RG LGI+G G IG+ + + A++ G V
Sbjct: 125 RG-------VPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 177
Query: 202 IFYDPYLPDGIEKSLGL---TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
FYD IE L L T+V L DLL SD VSLH N +++ I M+P
Sbjct: 178 YFYD------IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP 231
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGNLKDAPNILCTP 315
G+ L+N +RG +VD +LA AL + AA+DV +EP + F L + N+L TP
Sbjct: 232 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 291
Query: 316 H 316
H
Sbjct: 292 H 292
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 6/217 (2%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT E + K L++ + G G D++D++AA + I V V VA+ + ++L L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLV 163
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R + R G + + + + G +G V GRIG V F ++
Sbjct: 164 RNYIPSHDWARNGGW-----NIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHL 218
Query: 202 IFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ D + LP+ +EK L LT T +D+ D V+L+C L+ H+IN+ T+K + GA
Sbjct: 219 HYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGA 278
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
+LVNTARG L D D++ AL+ GR+ A DV +P
Sbjct: 279 YLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQP 315
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 6/217 (2%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT E + K L++ + G G D++D++AA + I V V VA+ + ++L L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLV 162
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R + R G + + + + G +G V GRIG V F ++
Sbjct: 163 RNYIPSHDWARNGGW-----NIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHL 217
Query: 202 IFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ D + LP+ +EK L LT T +D+ D V+L+C L+ H+IN+ T+K + GA
Sbjct: 218 HYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGA 277
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
+LVNTARG L D D++ AL+ GR+ A DV +P
Sbjct: 278 YLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQP 314
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 115/241 (47%), Gaps = 11/241 (4%)
Query: 91 KTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANM 150
+ ++ I G D+ID+ A GI V N P A+ + L+L RR M
Sbjct: 66 ENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM 125
Query: 151 VREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY-LP 209
+R + + G E L ++ TLGI G G IG A+A RA+ F ++ ++D +
Sbjct: 126 IRT-RSWPGWEPLELVGE---KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS 181
Query: 210 DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269
E S T +L LL S SL+ + N+ TIK + GA +VNTARG
Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241
Query: 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329
LVD++ + AAL+ GR+ A DV EP N+ +G D PN PH ++ T+ R
Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEP-NINEG-YYDLPNTFLFPHIG----SAATQAR 295
Query: 330 E 330
E
Sbjct: 296 E 296
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 107/234 (45%), Gaps = 12/234 (5%)
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT 144
E ++ L I+ G+D +D+ E G+ V N P ++VAD + LIL + RR
Sbjct: 80 ELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRI 139
Query: 145 YWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204
VR G G +L + G +GI+GLGRIG AVA RA+AF +
Sbjct: 140 CECDKYVRRGAWKFGDFKL------TTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI--- 190
Query: 205 DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
Y + + T ++ +L SD + + C L H+IN I + P L+N
Sbjct: 191 -SYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLIN 249
Query: 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
RG VD+ L +AL +GR+ A LDV E EP L N++ PH
Sbjct: 250 IGRGPHVDEPELVSALVEGRLGGAGLDVFEREPE--VPEKLFGLENVVLLPHVG 301
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELG--IAVCNVPGYGVEEVADTTL 134
+H +TKE ++K K L+++V G G D+ID+ + G I+V V G V VA+ +
Sbjct: 70 FHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVV 129
Query: 135 CLILNLYRRTYWLANMVREGKKFTGPE-QLREAASGCARIRGDTLGIVGLGRIGSAVALR 193
+L L R N V ++ + ++ A I G T+ +G GRIG V R
Sbjct: 130 MTMLVLVR------NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 183
Query: 194 AKAFGFNVIFYDPY--LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251
F + Y Y LP E+ +G RV +++L+ Q+D V+++ L+ LIN+
Sbjct: 184 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 243
Query: 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
+ + + GA+LVNTARG + + +AAAL+ G++R DV +P
Sbjct: 244 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQP 289
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELG--IAVCNVPGYGVEEVADTTL 134
+H +TKE ++K K L+++V G G D+ID+ + G I+V V G V VA+ +
Sbjct: 69 FHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVV 128
Query: 135 CLILNLYRRTYWLANMVREGKKFTGPE-QLREAASGCARIRGDTLGIVGLGRIGSAVALR 193
+L L R N V ++ + ++ A I G T+ +G GRIG V R
Sbjct: 129 MTMLVLVR------NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLER 182
Query: 194 AKAFGFNVIFYDPY--LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251
F + Y Y LP E+ +G RV +++L+ Q+D V+++ L+ LIN+
Sbjct: 183 LVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE 242
Query: 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
+ + + GA+LVNTARG + + +AAAL+ G++R DV +P
Sbjct: 243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQP 288
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 128/275 (46%), Gaps = 16/275 (5%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
L+ LR+I G DN DV A G+ + VP A+ + L + L R
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
VR GK F G Q R +G + T+G +G+G IG A+A R + +G + +++
Sbjct: 122 ADAFVRSGK-FRG-WQPRFYGTG---LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEA 176
Query: 207 YLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265
D E+ LGL +V +L SD + L LN HL+N + +RPGA LVN
Sbjct: 177 KALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPY------NVFQGNLKDAPNILCTPHAAF 319
RG +VD+ ++ AAL++G++ A DV E E + L PN L TPH
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 320 YSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354
A E+ AA I +A+ G P N VN+
Sbjct: 296 AVRAVRLEIERCAAQNILQALAGERPI---NAVNR 327
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 128/275 (46%), Gaps = 16/275 (5%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
L+ LR+I G DN DV A G+ + VP A+ + L + L R
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
VR GK F G Q R +G + T+G +G+G IG A+A R + +G + +++
Sbjct: 122 ADAFVRSGK-FRG-WQPRFYGTG---LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEA 176
Query: 207 YLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265
D E+ LGL +V +L SD + L LN HL+N + +RPGA LVN
Sbjct: 177 KALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPY------NVFQGNLKDAPNILCTPHAAF 319
RG +VD+ ++ AAL++G++ A DV E E + L PN L TPH
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 320 YSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354
A E+ AA I +A+ G P N VN+
Sbjct: 296 AVRAVRLEIERCAAQNILQALAGERPI---NAVNR 327
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161
G + +D+ AA + GI V N P VA+ + +L L R V E
Sbjct: 84 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRG-------VPEANAKAHRG 136
Query: 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGL--- 218
+ A+G RG LGI+G G IG+ + + A++ G V FYD IE L L
Sbjct: 137 VWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYD------IENKLPLGNA 190
Query: 219 TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278
T+V L DLL SD VSLH N +++ I M+PG+ L+N +RG +VD +L
Sbjct: 191 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCD 250
Query: 279 ALKQGRIRAAALDVHESEP---YNVFQGNLKDAPNILCTPH 316
AL + AA+DV +EP + F L + N+L TPH
Sbjct: 251 ALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPH 291
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 82 LTKEDLEKFK-TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNL 140
+T E + K + L+ I + G D+ID AA LGI V + P + A+ L+LN
Sbjct: 83 ITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNA 142
Query: 141 YRRTYWLANMVREGK-KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199
RR Y VR G GP QL + G LGI G GRIG A+A RA+ FG
Sbjct: 143 CRRGYEADRXVRSGSWPGWGPTQLLGXG-----LTGRRLGIFGXGRIGRAIATRARGFGL 197
Query: 200 NVIFYD-PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
+ +++ L +E+ G TL LL SD + ++ I ++
Sbjct: 198 AIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPE 255
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
GA ++N +RG L++DD+L AL+ + AA LDV +EP + NI TPH
Sbjct: 256 GAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP--AIDPRYRSLDNIFLTPH 311
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 112/241 (46%), Gaps = 19/241 (7%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT++ + + L I G + +D+ AA + GI V N P VA+ + +L L
Sbjct: 59 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 118
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R G + A+G RG LGI+G G IG+ + + A++ G V
Sbjct: 119 RGVPEANAKAHRGVG-------NKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYV 171
Query: 202 IFYDPYLPDGIEKSLGL---TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
FYD IE L L T+V L DLL SD VSLH N + I +P
Sbjct: 172 YFYD------IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKP 225
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGNLKDAPNILCTP 315
G+ L+N +RG +VD +LA AL + AA+DV +EP + F L + N+L TP
Sbjct: 226 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 285
Query: 316 H 316
H
Sbjct: 286 H 286
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 127/275 (46%), Gaps = 16/275 (5%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
L+ LR+I G DN DV A G+ + VP A+ + L + L R
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-D 205
VR G+ F G Q R +G + T+G +G+G IG A+A R + +G + ++
Sbjct: 122 ADAFVRSGQ-FRG-WQPRFYGTG---LDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR 176
Query: 206 PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265
L E+ LGL +V +L SD + L LN HL+N + +RPGA LVN
Sbjct: 177 KALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPY------NVFQGNLKDAPNILCTPHAAF 319
RG +VD+ ++ AAL++G++ A DV E E + L PN L TPH
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 320 YSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354
A E+ AA I +A+ G P N VN+
Sbjct: 296 AVRAVRLEIERCAAQNILQALAGERPI---NAVNR 327
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 127/275 (46%), Gaps = 16/275 (5%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
L+ LR+I G DN DV A G+ + VP A+ + L + L R
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-D 205
VR G+ F G Q R +G + T+G +G+G IG A+A R + +G + ++
Sbjct: 122 ADAFVRSGQ-FRG-WQPRFYGTG---LDNATVGFLGMGAIGLAMADRLQGWGATLQYHAR 176
Query: 206 PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265
L E+ LGL +V +L SD + L LN HL+N + +RPGA LVN
Sbjct: 177 KALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPY------NVFQGNLKDAPNILCTPHAAF 319
RG +VD+ ++ AAL++G++ A DV E E + L PN L TPH
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 320 YSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354
A E+ AA I +A+ G P N VN+
Sbjct: 296 AVRAVRLEIERCAAQNILQALAGERPI---NAVNR 327
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 133/270 (49%), Gaps = 26/270 (9%)
Query: 84 KEDLEKFKTL--RIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
K++L+ +K L + I+ +G D+ID + A ELG + VP Y +A+ + + L
Sbjct: 59 KQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLL 118
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R T + + R KK +A +R T+G+VGLGRIG A G V
Sbjct: 119 RHTAYTTS--RTAKK----NFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATV 172
Query: 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
I D + GIE T+V +L ++L +SD +++H + N ++ +K+M+ GA
Sbjct: 173 IGEDVFEIKGIEDYC--TQV-SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAI 229
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA------------- 308
LVN ARG LVD +++ A++ G++ DV + E +VF +L+
Sbjct: 230 LVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEA-SVFGKDLEGQKLENPLFEKLVDL 288
Query: 309 -PNILCTPHAAFYSEASCTELREMAASEIR 337
P +L TPH Y++ + + E++ ++
Sbjct: 289 YPRVLITPHLGSYTDEAVKNMVEVSYQNLK 318
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 125/275 (45%), Gaps = 16/275 (5%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
L+ LR+I G DN DV A G+ + VP A+ + L + L R
Sbjct: 63 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 122
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
VR G+ F G Q R +G + T+G +G G IG A A R + +G + ++
Sbjct: 123 ADAFVRSGQ-FRG-WQPRFYGTG---LDNATVGFLGXGAIGLAXADRLQGWGATLQYHAA 177
Query: 207 YLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265
D E+ LGL +V +L SD + L LN HL+N + +RPGA LVN
Sbjct: 178 KALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 236
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPY------NVFQGNLKDAPNILCTPHAAF 319
RG +VD+ ++ AAL++G++ A DV E E + L PN L TPH
Sbjct: 237 CRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGS 296
Query: 320 YSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354
A E+ AA I +A+ G P N VN+
Sbjct: 297 AVRAVRLEIERCAAQNILQALAGERPI---NAVNR 328
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 104/221 (47%), Gaps = 19/221 (8%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161
G + +D+ AA + GI V N P VA+ + +L L R V E
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRG-------VPEANAKAHRG 137
Query: 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGL--- 218
+ A+G RG LGI+G G IG+ + + A++ G V FYD IE L L
Sbjct: 138 VWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD------IENKLPLGNA 191
Query: 219 TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278
T+V L DLL SD VSLH N + I +PG+ L+N +RG +VD +L
Sbjct: 192 TQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCD 251
Query: 279 ALKQGRIRAAALDVHESEP---YNVFQGNLKDAPNILCTPH 316
AL + AA+DV +EP + F L + N+L TPH
Sbjct: 252 ALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPH 292
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 4/205 (1%)
Query: 93 LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVR 152
L++I + G+D++ + + GI V P + A+ + L+L RR V+
Sbjct: 77 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 136
Query: 153 EGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI 212
G +T + L G + T+GI+GLGRIG A+A R K FG Y P
Sbjct: 137 NGG-WTSWKPLWLCGYGLTQ---STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 192
Query: 213 EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272
E + + +L QSD + + C+L L N+ ++M+ A +N +RG +V+
Sbjct: 193 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN 252
Query: 273 DDSLAAALKQGRIRAAALDVHESEP 297
D L AL G+I AA LDV EP
Sbjct: 253 QDDLYQALASGKIAAAGLDVTSPEP 277
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 7/243 (2%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136
+H +T E ++K K L++++ G G D+ID++AA G+ V V G V VA+ L
Sbjct: 71 FHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMR 130
Query: 137 ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKA 196
IL L R N V +G+ + A + G T+G VG GRIG + R K
Sbjct: 131 ILILMRNFVPGYNQVVKGEW-----NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKP 185
Query: 197 FGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
FG N++++D + +EK G V L ++L + D + ++ L E + N+ I +
Sbjct: 186 FGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGK 245
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
++ G +VN ARG +++ ++ A++ G I + DV + +P + PN TP
Sbjct: 246 LKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPK-DHPWRYMPNQAMTP 304
Query: 316 HAA 318
H +
Sbjct: 305 HTS 307
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 7/243 (2%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136
+H +T E ++K K L++++ G G D+ID++AA G+ V V G V VA+ L
Sbjct: 77 FHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMR 136
Query: 137 ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKA 196
IL L R N V +G+ + A + G T+G VG GRIG + R K
Sbjct: 137 ILILMRNFVPGYNQVVKGEW-----NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKP 191
Query: 197 FGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
FG N++++D + +EK G V L ++L + D + ++ L E + N+ I +
Sbjct: 192 FGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGK 251
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
++ G +VN ARG +++ ++ A++ G I + DV + +P + PN TP
Sbjct: 252 LKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPK-DHPWRYMPNQAMTP 310
Query: 316 HAA 318
H +
Sbjct: 311 HTS 313
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 4/205 (1%)
Query: 93 LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVR 152
L++I G+D++ + + GI V P + A+ + L+L RR V+
Sbjct: 75 LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 134
Query: 153 EGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI 212
G +T + L G + T+GI+GLGRIG A+A R K FG Y P
Sbjct: 135 NGG-WTSWKPLWLCGYGLTQ---STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 190
Query: 213 EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272
E + + +L QSD + + C+L L N+ ++ + A +N +RG +V+
Sbjct: 191 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVN 250
Query: 273 DDSLAAALKQGRIRAAALDVHESEP 297
D L AL G+I AA LDV EP
Sbjct: 251 QDDLYQALASGKIAAAGLDVTSPEP 275
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS----LGLTRVY---TLQ 225
++G TL I+G G IG +A K FG V+ G+ +S G +VY L
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVL--------GVSRSGRERAGFDQVYQLPALN 189
Query: 226 DLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285
+L Q+D + HHL + +PGA L N RG +++ L AL+ G++
Sbjct: 190 KMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKL 249
Query: 286 RAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYS 321
A LDV E EP L PN++ TPH + YS
Sbjct: 250 GMAVLDVFEQEPLPA-DSPLWGQPNLIITPHNSAYS 284
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 33/228 (14%)
Query: 74 ALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTT 133
AL ++ E L + + +G D++D + GI PG V +
Sbjct: 43 ALXVRSVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYV 102
Query: 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALR 193
+L L R + +R T+GIVG+G +GS + R
Sbjct: 103 FSALLXLAERDGF-------------------------SLRDRTIGIVGVGNVGSRLQTR 137
Query: 194 AKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE----HNHHLIN 249
+A G + DP P G R TL +L+ ++D ++ H L + HL +
Sbjct: 138 LEALGIRTLLCDP--PRAARGDEGDFR--TLDELVQEADVLTFHTPLYKDGPYKTLHLAD 193
Query: 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
E I++++PGA L+N RG +VD+ +L A L G+ + LDV E EP
Sbjct: 194 ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 9/218 (4%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGV-DNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNL 140
L+ E L + LR I+ + S + +N + + GI V E VA+ L L L
Sbjct: 86 LSAETLARXPALRSILNVESNLLNNXPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALAL 145
Query: 141 YRRTYWLANMVREGKKFTGPEQLREAASGCAR-IRGDTLGIVGLGRIGSAVALRAKAFGF 199
R +EG + G E + AR I G +GIVG G +G A+ F
Sbjct: 146 ARGIVDADIAFQEGTELWGGE-----GNASARLIAGSEIGIVGFGDLGKALRRVLSGFRA 200
Query: 200 NVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPG 259
+ +DP+LP + G+ +L+D+L +SD + + + N + R G
Sbjct: 201 RIRVFDPWLPRSXLEENGVEPA-SLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSXRRG 259
Query: 260 AFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
A + +R +VD D+L AA+ G I AA+ DV+ EP
Sbjct: 260 AAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEEP 296
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 125/306 (40%), Gaps = 74/306 (24%)
Query: 43 MPILKD----VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT------ 92
M IL D V F D S + + ++ A AL ++L + E +
Sbjct: 1 MRILADENIPVVDAFFADQGSIRRLPGRAIDRA--ALAEVDVLLVRSVTEVSRAALAGSP 58
Query: 93 LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTL-CLIL-------NLYRRT 144
+R + G D++D+ E GIA + PG V D L CL+ +L RT
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERT 118
Query: 145 YWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204
Y + + G + E LR G+ V+
Sbjct: 119 YGVVGAGQVGGRLV--EVLR-------------------------------GLGWKVLVC 145
Query: 205 DP----YLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN---EH-NHHLINEFTIKQM 256
DP PDG +L+ LL ++D +SLH LN EH HL++E + +
Sbjct: 146 DPPRQAREPDG--------EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAAL 197
Query: 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPN-ILCTP 315
RPG +LVN +RG +VD+ +L L+ G ALDV E EP Q + + A ++ TP
Sbjct: 198 RPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP----QADPELAARCLIATP 253
Query: 316 HAAFYS 321
H A YS
Sbjct: 254 HIAGYS 259
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 19/229 (8%)
Query: 93 LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTY--WLANM 150
L+ + I +GVD + +KA G+ V N G + ++++ L +L++ R + WL
Sbjct: 62 LKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ- 120
Query: 151 VREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP--YL 208
R +++ P + + G L I G G+IG ++A +A A G +VI + +
Sbjct: 121 -RGARQWALP-------MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHP 172
Query: 209 PDGIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267
D +++ T F + + L T HHL + +Q + L+N R
Sbjct: 173 ADHFHETVAFTATADALATANFIVNALPLTPT----THHLFSTELFQQTKQQPMLINIGR 228
Query: 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
G VD +L AL ++ AALDV E EP L ++L TPH
Sbjct: 229 GPAVDTTALMTALDHHQLSMAALDVTEPEPLPT-DHPLWQRDDVLITPH 276
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 25/258 (9%)
Query: 69 NEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEE 128
N A AL+W + E L + L+ + +G+GVD I K ++P + +E+
Sbjct: 40 NPADYALVWQPPV---EXLAG-RRLKAVFVLGAGVDAILSKLNAHPEXLDASIPLFRLED 95
Query: 129 VA------DTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVG 182
+ + +L+ +RR + + PE RE S +GI G
Sbjct: 96 TGXGLQXQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFS---------VGIXG 146
Query: 183 LGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
G +G+ VA +A+GF + + G+E +G L+ L Q+ +
Sbjct: 147 AGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREE---LRAFLNQTRVLINLLPN 203
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
+IN + Q+ GA+++N ARG V + L AAL G+++ A LDV EP
Sbjct: 204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQ 263
Query: 301 FQGNLKDAPNILCTPHAA 318
+ L P + TPH A
Sbjct: 264 -ESPLWRHPRVAXTPHIA 280
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 18/228 (7%)
Query: 91 KTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANM 150
K + I I +GVD+IDV E + N Y + VA+ L+L A
Sbjct: 48 KRTKXIQAISAGVDHIDVNGIPENVVLCSNAGAYSIS-VAEHAFALLLAH-------AKN 99
Query: 151 VREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD 210
+ E + R+ S + G LGI+G G IG VA AKAFG VI Y
Sbjct: 100 ILENNELXKAGIFRQ--SPTTLLYGKALGILGYGGIGRRVAHLAKAFGXRVI---AYTRS 154
Query: 211 GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270
+++++ + + DL QSD V + L + +N + R +VN AR +
Sbjct: 155 SVDQNVDVIS-ESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADV 213
Query: 271 VDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
V LK+ DV +EP + + NL++A + +PH A
Sbjct: 214 VSKPDXIGFLKERSDVWYLSDVWWNEP-EITETNLRNA---ILSPHVA 257
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 14/237 (5%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+T E+L K L+ I + +G+D++ ++ + V G + VA+ L L+L Y
Sbjct: 40 ITAEELAKXPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPY 98
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
+R +++ G+K + R+ I+G+ + ++GLG IG+ V A G V
Sbjct: 99 KR------IIQYGEKXKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 150
Query: 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
+ +G + +L++ L ++ LN+H L+ + A
Sbjct: 151 RGFSRTPKEGPWRFTN-----SLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAV 205
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
VN R ++D D + LK+ A DV PN++ TP A
Sbjct: 206 FVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 262
>pdb|3HQ2|A Chain A, Bsucp Crystal Structure
pdb|3HQ2|B Chain B, Bsucp Crystal Structure
Length = 501
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Query: 208 LPDGIEKSLGLTRVYTLQDLLFQSDCVSLH-------CTLNEHNHHLINEFTIKQMRPGA 260
P +K L L Y LQ+L + D L TLN + + + K R
Sbjct: 204 FPKEKQKELSL---YFLQELGYDFDGGRLDETVHPFATTLNRGDVRVTTRYDEKDFRTAI 260
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIR-AAALDVHESEPYNVFQGNLKDAPNILCTPHAAF 319
F G + + ++ AL + A++ +HES+ ++F N TP+
Sbjct: 261 FGTIHECGHAIYEQNIDEALSGTNLSDGASMGIHESQ--SLFYENFIGRNKHFWTPYYKK 318
Query: 320 YSEASCTELREMAASEIRRAIVGRIPDCLR 349
EAS + ++++ + RAI P +R
Sbjct: 319 IQEASPVQFKDISLDDFVRAINESKPSFIR 348
>pdb|3O9P|A Chain A, The Structure Of The Escherichia Coli Murein Tripeptide
Binding Protein Mppa
Length = 519
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 284 RIRAAALDVHESEPYNVFQGNLKDAPNILCT-PHAAFYSEASCTELREMAASEIRRAI 340
R A +D+ ES P N++Q LKD P + T P Y A T+ A +R A+
Sbjct: 238 RYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLAL 295
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 198 GFNVIFYDPY----------LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247
G V F DPY L G+ K + L+ + +DL V + + H+H L
Sbjct: 183 GPTVAFLDPYESAQKAVYELLAKGVNKIVVLSHLGYGEDLKLARRLVGVQVIVGGHSHTL 242
Query: 248 INEFTIKQMRP 258
+ F K++ P
Sbjct: 243 LGSFPHKELSP 253
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVI-----FYDPYLPDGIE 213
+RG + + GLG++G+AVAL A+ G V+ Y P+G++
Sbjct: 216 LRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLD 261
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
G LG+VG G++G A+A G+ V DP
Sbjct: 35 GAWLGMVGGGQLGRMFCFAAQAMGYRVAVLDP 66
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 178 LGIVGLGRIGS--AVALRAKAFGFNVIFYD 205
+GIVGLGR+GS A AL K F ++ D
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLID 32
>pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
Length = 305
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN-LYR 142
+E +E+F+ + SG+ D+K A LGIA N DT L L L R
Sbjct: 215 QELVERFRAAGGEIGEASGIHPEDIKKAISLGIAKINT---------DTDLRLAFTALVR 265
Query: 143 RTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVG 182
T + +K+ GP REA + R + G VG
Sbjct: 266 ETLGKNPKEFDPRKYLGP--AREAVKEVVKSRXELFGSVG 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,641,186
Number of Sequences: 62578
Number of extensions: 457019
Number of successful extensions: 1254
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 81
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)