Query psy7383
Match_columns 501
No_of_seqs 309 out of 2626
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 16:49:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 1E-68 2.3E-73 549.5 31.5 284 60-353 36-319 (324)
2 PRK15409 bifunctional glyoxyla 100.0 1.5E-67 3.2E-72 541.2 34.8 316 28-355 2-321 (323)
3 COG1052 LdhA Lactate dehydroge 100.0 8.3E-67 1.8E-71 535.3 33.5 304 43-354 16-323 (324)
4 PRK08410 2-hydroxyacid dehydro 100.0 3E-66 6.4E-71 529.1 34.2 304 31-343 3-310 (311)
5 PRK06487 glycerate dehydrogena 100.0 2.1E-65 4.5E-70 524.1 34.9 303 31-343 3-311 (317)
6 PRK13243 glyoxylate reductase; 100.0 2.6E-65 5.6E-70 526.6 34.3 321 28-356 2-325 (333)
7 PRK06932 glycerate dehydrogena 100.0 2.3E-64 5E-69 515.8 34.7 281 54-343 29-313 (314)
8 PLN02306 hydroxypyruvate reduc 100.0 1.6E-63 3.4E-68 521.9 35.3 319 26-353 13-354 (386)
9 PRK07574 formate dehydrogenase 100.0 1.3E-63 2.9E-68 521.9 34.0 314 45-365 63-382 (385)
10 PLN03139 formate dehydrogenase 100.0 6.2E-63 1.3E-67 516.7 36.8 287 61-355 89-378 (386)
11 PRK11790 D-3-phosphoglycerate 100.0 2.6E-63 5.7E-68 524.3 34.0 311 29-354 11-327 (409)
12 PLN02928 oxidoreductase family 100.0 7.4E-63 1.6E-67 511.0 35.3 307 27-347 17-342 (347)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 2.8E-62 6.1E-67 531.0 33.8 301 44-357 14-315 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 1.8E-61 4E-66 524.8 34.4 313 30-357 2-316 (526)
15 PRK12480 D-lactate dehydrogena 100.0 1.3E-60 2.8E-65 491.3 30.4 306 30-347 3-327 (330)
16 KOG0068|consensus 100.0 5.2E-61 1.1E-65 482.6 25.8 313 30-356 8-323 (406)
17 PRK08605 D-lactate dehydrogena 100.0 1.6E-58 3.5E-63 475.9 29.8 278 59-346 35-328 (332)
18 PRK15469 ghrA bifunctional gly 100.0 4.3E-57 9.4E-62 461.9 28.2 267 69-355 37-309 (312)
19 PRK06436 glycerate dehydrogena 100.0 1.1E-55 2.3E-60 449.9 27.5 247 88-357 45-293 (303)
20 PRK00257 erythronate-4-phospha 100.0 2.9E-55 6.3E-60 458.5 29.7 280 30-347 2-285 (381)
21 PRK15438 erythronate-4-phospha 100.0 3.4E-55 7.3E-60 457.2 27.7 273 30-340 2-278 (378)
22 KOG0069|consensus 100.0 5.6E-55 1.2E-59 446.0 25.6 266 71-344 61-329 (336)
23 KOG0067|consensus 100.0 4.7E-48 1E-52 392.6 19.7 355 2-363 5-359 (435)
24 PF02826 2-Hacid_dh_C: D-isome 100.0 1.5E-46 3.3E-51 354.6 17.0 177 134-318 1-178 (178)
25 PTZ00075 Adenosylhomocysteinas 99.8 2.6E-20 5.6E-25 199.1 16.7 170 97-299 196-367 (476)
26 PF00389 2-Hacid_dh: D-isomer 99.8 2.2E-19 4.7E-24 161.4 12.1 100 31-133 1-101 (133)
27 TIGR02853 spore_dpaA dipicolin 99.8 5.3E-19 1.1E-23 179.5 11.8 167 80-286 80-257 (287)
28 PRK08306 dipicolinate synthase 99.6 1.2E-14 2.6E-19 148.2 15.4 152 82-268 83-243 (296)
29 PLN02494 adenosylhomocysteinas 99.6 2.3E-15 5.1E-20 161.0 10.4 120 172-297 251-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.5 5.4E-14 1.2E-18 148.9 11.4 119 172-295 192-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 1.1E-13 2.4E-18 142.0 9.8 93 171-265 12-105 (335)
32 PF03446 NAD_binding_2: NAD bi 99.5 1.8E-13 3.8E-18 127.5 8.8 115 176-292 2-118 (163)
33 COG2084 MmsB 3-hydroxyisobutyr 99.4 1.8E-12 3.8E-17 131.6 10.8 115 176-292 1-119 (286)
34 PRK05476 S-adenosyl-L-homocyst 99.3 5.7E-12 1.2E-16 134.4 11.8 156 97-278 154-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.3 1.2E-11 2.7E-16 124.9 10.8 113 177-291 1-116 (291)
36 PRK12490 6-phosphogluconate de 99.3 2.3E-11 5.1E-16 123.9 12.1 112 177-291 2-117 (299)
37 PRK15461 NADH-dependent gamma- 99.3 2.1E-11 4.5E-16 124.1 11.1 115 176-292 2-119 (296)
38 PRK11559 garR tartronate semia 99.3 2.3E-11 4.9E-16 123.0 11.1 114 176-291 3-119 (296)
39 PF00670 AdoHcyase_NAD: S-aden 99.3 1.5E-11 3.3E-16 115.1 8.8 102 172-278 20-123 (162)
40 PRK09599 6-phosphogluconate de 99.2 7.3E-11 1.6E-15 120.2 12.1 114 176-292 1-118 (301)
41 PRK15059 tartronate semialdehy 99.2 1.7E-10 3.6E-15 117.6 10.9 114 177-292 2-117 (292)
42 PRK05479 ketol-acid reductoiso 99.1 2.1E-10 4.5E-15 118.9 10.9 119 171-300 13-133 (330)
43 PLN02256 arogenate dehydrogena 99.1 1E-09 2.2E-14 112.6 15.2 140 173-317 34-174 (304)
44 PLN02350 phosphogluconate dehy 99.1 2.6E-10 5.6E-15 123.9 11.2 114 176-292 7-131 (493)
45 PLN02712 arogenate dehydrogena 99.1 4.9E-10 1.1E-14 125.9 10.7 111 171-282 365-476 (667)
46 TIGR00872 gnd_rel 6-phosphoglu 99.0 1.5E-09 3.3E-14 110.6 11.9 114 176-293 1-118 (298)
47 cd00401 AdoHcyase S-adenosyl-L 99.0 1.1E-09 2.5E-14 116.5 11.2 102 172-278 199-302 (413)
48 TIGR01692 HIBADH 3-hydroxyisob 99.0 1.2E-09 2.6E-14 110.6 10.4 111 180-292 1-114 (288)
49 PLN02858 fructose-bisphosphate 99.0 1.4E-09 3E-14 130.6 12.2 117 174-292 3-124 (1378)
50 PTZ00142 6-phosphogluconate de 99.0 1.7E-09 3.8E-14 117.1 11.2 114 176-292 2-125 (470)
51 KOG0409|consensus 99.0 1.1E-09 2.4E-14 110.9 8.8 118 173-292 33-154 (327)
52 PLN02858 fructose-bisphosphate 99.0 2.5E-09 5.4E-14 128.4 11.9 116 175-292 324-444 (1378)
53 PRK08655 prephenate dehydrogen 98.9 1.5E-08 3.2E-13 109.0 14.7 134 176-317 1-137 (437)
54 TIGR00873 gnd 6-phosphoglucona 98.9 5.6E-09 1.2E-13 113.1 10.9 113 177-292 1-122 (467)
55 PLN02712 arogenate dehydrogena 98.8 8.9E-09 1.9E-13 115.9 9.8 107 173-280 50-157 (667)
56 COG0499 SAM1 S-adenosylhomocys 98.8 9.9E-09 2.2E-13 106.1 9.1 117 173-294 207-325 (420)
57 TIGR00465 ilvC ketol-acid redu 98.8 1.3E-08 2.7E-13 105.2 9.8 100 173-277 1-102 (314)
58 PLN02545 3-hydroxybutyryl-CoA 98.8 5.5E-08 1.2E-12 98.7 13.7 104 176-282 5-133 (295)
59 PLN02688 pyrroline-5-carboxyla 98.8 1.1E-07 2.3E-12 94.7 14.2 103 176-282 1-109 (266)
60 PRK07417 arogenate dehydrogena 98.8 3.7E-08 8.1E-13 99.4 10.5 135 176-318 1-142 (279)
61 PRK07502 cyclohexadienyl dehyd 98.7 7.2E-08 1.6E-12 98.5 12.2 146 175-326 6-161 (307)
62 PF03807 F420_oxidored: NADP o 98.7 1.9E-08 4E-13 84.9 6.5 89 177-268 1-96 (96)
63 PRK09260 3-hydroxybutyryl-CoA 98.7 1.7E-07 3.6E-12 95.0 14.6 114 176-293 2-141 (288)
64 PRK14619 NAD(P)H-dependent gly 98.7 4E-08 8.7E-13 100.5 9.9 83 174-270 3-86 (308)
65 PF07991 IlvN: Acetohydroxy ac 98.7 3.1E-08 6.7E-13 92.9 8.2 93 173-268 2-96 (165)
66 PRK08293 3-hydroxybutyryl-CoA 98.7 3.9E-07 8.4E-12 92.4 15.2 139 176-328 4-169 (287)
67 PRK11064 wecC UDP-N-acetyl-D-m 98.7 1.6E-07 3.4E-12 100.4 12.4 108 176-283 4-136 (415)
68 PRK15182 Vi polysaccharide bio 98.7 1.5E-07 3.3E-12 100.9 12.3 138 175-313 6-173 (425)
69 PRK12491 pyrroline-5-carboxyla 98.7 1E-07 2.2E-12 96.4 10.2 102 176-281 3-110 (272)
70 PRK05225 ketol-acid reductoiso 98.7 4.2E-08 9E-13 105.0 7.5 95 170-268 31-132 (487)
71 PRK06545 prephenate dehydrogen 98.7 3E-07 6.5E-12 96.3 13.7 135 176-318 1-149 (359)
72 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 2.6E-07 5.6E-12 89.5 11.6 107 172-286 25-134 (200)
73 PRK07679 pyrroline-5-carboxyla 98.6 2.4E-07 5.2E-12 93.5 11.9 103 175-281 3-112 (279)
74 COG1023 Gnd Predicted 6-phosph 98.6 1.6E-07 3.6E-12 92.8 10.2 116 176-294 1-120 (300)
75 PRK08507 prephenate dehydrogen 98.6 4.3E-07 9.3E-12 91.4 13.0 132 176-317 1-142 (275)
76 TIGR03026 NDP-sugDHase nucleot 98.6 7.3E-07 1.6E-11 94.9 15.3 105 176-280 1-134 (411)
77 TIGR00518 alaDH alanine dehydr 98.6 9.3E-08 2E-12 100.8 7.8 95 172-266 164-267 (370)
78 PRK07066 3-hydroxybutyryl-CoA 98.6 4.9E-07 1.1E-11 93.7 12.9 105 176-282 8-133 (321)
79 PRK11199 tyrA bifunctional cho 98.6 9.6E-07 2.1E-11 93.2 15.4 90 174-278 97-187 (374)
80 PRK07530 3-hydroxybutyryl-CoA 98.6 9.8E-07 2.1E-11 89.4 14.7 102 176-281 5-132 (292)
81 PRK07531 bifunctional 3-hydrox 98.6 8.3E-07 1.8E-11 96.9 14.8 116 176-295 5-141 (495)
82 KOG1370|consensus 98.6 1.5E-07 3.2E-12 95.7 7.9 93 173-270 212-305 (434)
83 COG0287 TyrA Prephenate dehydr 98.5 1E-06 2.2E-11 89.8 13.5 136 175-318 3-146 (279)
84 cd01065 NAD_bind_Shikimate_DH 98.5 3.8E-07 8.1E-12 83.1 9.3 109 173-286 17-134 (155)
85 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.9E-06 4E-11 88.3 15.1 139 176-327 3-166 (308)
86 PRK14618 NAD(P)H-dependent gly 98.5 4.2E-07 9.1E-12 93.6 10.2 102 175-282 4-123 (328)
87 PRK07819 3-hydroxybutyryl-CoA 98.5 2.3E-06 5E-11 87.1 15.1 115 176-294 6-146 (286)
88 PRK08268 3-hydroxy-acyl-CoA de 98.5 1.4E-06 3.1E-11 95.5 14.5 113 176-294 8-147 (507)
89 PRK14806 bifunctional cyclohex 98.5 1.1E-06 2.3E-11 100.0 13.7 137 176-319 4-153 (735)
90 PRK14194 bifunctional 5,10-met 98.5 3.9E-07 8.5E-12 93.5 9.0 129 172-341 156-287 (301)
91 PRK13302 putative L-aspartate 98.5 3.4E-07 7.4E-12 92.6 8.5 107 175-286 6-118 (271)
92 PRK08818 prephenate dehydrogen 98.5 3.1E-06 6.7E-11 89.4 15.5 123 173-316 2-130 (370)
93 PRK06130 3-hydroxybutyryl-CoA 98.5 2.6E-06 5.7E-11 86.9 14.6 110 176-287 5-135 (311)
94 PRK05808 3-hydroxybutyryl-CoA 98.5 3.6E-06 7.9E-11 84.9 15.2 104 176-282 4-132 (282)
95 PRK14189 bifunctional 5,10-met 98.4 1.9E-06 4.1E-11 87.9 12.6 113 172-326 155-268 (285)
96 TIGR01724 hmd_rel H2-forming N 98.4 8.8E-07 1.9E-11 91.3 10.3 92 187-282 32-129 (341)
97 PRK00094 gpsA NAD(P)H-dependen 98.4 6.6E-07 1.4E-11 91.1 8.7 92 176-269 2-108 (325)
98 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 4.2E-06 9.1E-11 91.7 14.9 117 176-297 6-148 (503)
99 PRK09287 6-phosphogluconate de 98.4 1.3E-06 2.8E-11 94.7 10.0 104 186-292 1-113 (459)
100 PRK07680 late competence prote 98.4 1.7E-06 3.7E-11 87.0 10.1 101 177-281 2-109 (273)
101 PRK06035 3-hydroxyacyl-CoA deh 98.4 9E-06 2E-10 82.5 15.3 104 176-282 4-135 (291)
102 cd01080 NAD_bind_m-THF_DH_Cycl 98.4 1.5E-06 3.3E-11 82.2 8.9 114 172-324 41-155 (168)
103 PRK06476 pyrroline-5-carboxyla 98.3 1.6E-06 3.5E-11 86.4 9.1 101 177-283 2-108 (258)
104 PRK14179 bifunctional 5,10-met 98.3 6.3E-06 1.4E-10 84.1 12.6 126 172-339 155-281 (284)
105 PRK14188 bifunctional 5,10-met 98.3 2.3E-06 4.9E-11 87.8 9.3 79 172-270 155-234 (296)
106 PRK15057 UDP-glucose 6-dehydro 98.3 4.2E-06 9.1E-11 88.9 11.4 130 176-313 1-160 (388)
107 TIGR00561 pntA NAD(P) transhyd 98.3 1.4E-05 3.1E-10 87.4 15.2 172 82-267 74-285 (511)
108 PRK06928 pyrroline-5-carboxyla 98.3 5.4E-06 1.2E-10 83.9 11.2 102 176-281 2-111 (277)
109 PF01488 Shikimate_DH: Shikima 98.2 1.5E-06 3.2E-11 78.9 5.7 98 172-272 9-115 (135)
110 PRK11880 pyrroline-5-carboxyla 98.2 6E-06 1.3E-10 82.3 10.4 100 176-281 3-107 (267)
111 PRK07634 pyrroline-5-carboxyla 98.2 8.6E-06 1.9E-10 80.0 10.1 104 175-283 4-114 (245)
112 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 6.7E-06 1.5E-10 76.3 8.6 91 177-269 1-106 (157)
113 PRK08229 2-dehydropantoate 2-r 98.1 1E-05 2.2E-10 83.4 10.0 108 176-287 3-127 (341)
114 PRK13304 L-aspartate dehydroge 98.1 7.1E-06 1.5E-10 82.7 8.7 106 176-286 2-115 (265)
115 PRK09424 pntA NAD(P) transhydr 98.1 2.9E-05 6.3E-10 85.2 14.0 181 71-267 66-286 (509)
116 PRK05472 redox-sensing transcr 98.1 2.3E-06 5E-11 83.3 4.4 131 127-282 61-201 (213)
117 PF10727 Rossmann-like: Rossma 98.1 2.2E-06 4.9E-11 77.6 4.0 108 174-285 9-121 (127)
118 PRK14175 bifunctional 5,10-met 98.1 9.3E-06 2E-10 83.0 8.8 116 172-329 155-271 (286)
119 COG0345 ProC Pyrroline-5-carbo 98.1 1.2E-05 2.7E-10 81.3 9.6 102 176-285 2-112 (266)
120 PF01262 AlaDh_PNT_C: Alanine 98.1 8.2E-06 1.8E-10 76.6 7.8 96 171-266 16-139 (168)
121 cd05191 NAD_bind_amino_acid_DH 98.1 2.1E-05 4.5E-10 65.8 8.9 66 172-266 20-86 (86)
122 PF02737 3HCDH_N: 3-hydroxyacy 98.0 3.9E-05 8.5E-10 73.1 10.9 102 177-281 1-127 (180)
123 TIGR01915 npdG NADPH-dependent 98.0 2.3E-05 5E-10 76.5 8.9 91 176-269 1-104 (219)
124 TIGR01035 hemA glutamyl-tRNA r 98.0 1.4E-05 3E-10 85.6 7.9 99 172-273 177-284 (417)
125 COG2085 Predicted dinucleotide 98.0 3.4E-05 7.4E-10 75.4 9.3 90 176-268 2-95 (211)
126 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 2.6E-05 5.5E-10 74.8 7.8 138 176-313 1-171 (185)
127 PTZ00431 pyrroline carboxylate 97.9 6.2E-05 1.3E-09 75.5 10.9 98 175-282 3-104 (260)
128 PRK14191 bifunctional 5,10-met 97.9 0.0001 2.3E-09 75.3 12.3 125 172-338 154-279 (285)
129 PRK06522 2-dehydropantoate 2-r 97.9 6.8E-05 1.5E-09 75.6 10.9 118 176-297 1-132 (304)
130 PRK12921 2-dehydropantoate 2-r 97.9 5.2E-05 1.1E-09 76.7 10.1 109 176-287 1-122 (305)
131 cd05311 NAD_bind_2_malic_enz N 97.9 0.00015 3.3E-09 71.6 12.7 152 172-341 22-196 (226)
132 cd05213 NAD_bind_Glutamyl_tRNA 97.9 4.5E-05 9.8E-10 78.6 8.9 94 173-268 176-275 (311)
133 KOG2380|consensus 97.9 2.2E-05 4.8E-10 81.2 6.4 108 175-283 52-160 (480)
134 PRK12557 H(2)-dependent methyl 97.9 5.8E-05 1.3E-09 79.1 9.4 94 187-281 32-132 (342)
135 COG0059 IlvC Ketol-acid reduct 97.9 4E-05 8.8E-10 78.4 7.8 94 172-268 15-110 (338)
136 PRK00045 hemA glutamyl-tRNA re 97.8 3.7E-05 8E-10 82.5 7.9 94 172-268 179-282 (423)
137 PRK10792 bifunctional 5,10-met 97.8 8.4E-05 1.8E-09 76.0 10.0 124 172-337 156-280 (285)
138 PF02882 THF_DHG_CYH_C: Tetrah 97.8 5.8E-05 1.3E-09 71.0 7.5 122 172-338 33-155 (160)
139 TIGR01546 GAPDH-II_archae glyc 97.8 6E-05 1.3E-09 78.6 8.2 86 178-266 1-108 (333)
140 PRK14190 bifunctional 5,10-met 97.8 0.00025 5.5E-09 72.5 12.2 113 172-326 155-268 (284)
141 PLN00203 glutamyl-tRNA reducta 97.8 4.8E-05 1E-09 83.8 7.4 95 172-269 263-372 (519)
142 PRK06141 ornithine cyclodeamin 97.8 0.0001 2.2E-09 76.1 9.1 89 173-267 123-220 (314)
143 PRK14192 bifunctional 5,10-met 97.7 0.00011 2.5E-09 75.0 9.0 78 172-269 156-234 (283)
144 PRK14178 bifunctional 5,10-met 97.7 8.9E-05 1.9E-09 75.6 8.0 78 172-269 149-227 (279)
145 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00022 4.7E-09 69.2 10.1 90 171-267 58-157 (197)
146 PRK14176 bifunctional 5,10-met 97.7 0.00012 2.5E-09 75.0 8.8 112 172-326 161-273 (287)
147 cd05212 NAD_bind_m-THF_DH_Cycl 97.7 0.00033 7.1E-09 64.6 10.9 78 172-269 25-103 (140)
148 COG0686 Ald Alanine dehydrogen 97.7 6.1E-05 1.3E-09 77.4 6.1 98 169-266 162-268 (371)
149 PRK00258 aroE shikimate 5-dehy 97.7 0.0001 2.2E-09 74.7 7.4 96 172-267 120-222 (278)
150 PRK14169 bifunctional 5,10-met 97.6 0.00078 1.7E-08 68.9 13.4 119 172-332 153-272 (282)
151 PLN02353 probable UDP-glucose 97.6 0.0011 2.3E-08 72.5 14.8 137 176-313 2-176 (473)
152 COG0362 Gnd 6-phosphogluconate 97.6 0.0012 2.6E-08 70.0 13.9 155 176-343 4-167 (473)
153 TIGR00507 aroE shikimate 5-deh 97.6 0.00031 6.6E-09 70.8 9.3 109 173-286 115-232 (270)
154 PLN02516 methylenetetrahydrofo 97.6 0.001 2.2E-08 68.5 13.2 132 172-340 164-297 (299)
155 PTZ00345 glycerol-3-phosphate 97.6 0.0003 6.5E-09 74.4 9.3 97 174-272 10-135 (365)
156 PRK06249 2-dehydropantoate 2-r 97.5 0.00048 1E-08 70.7 10.5 111 176-290 6-129 (313)
157 TIGR02371 ala_DH_arch alanine 97.5 0.00026 5.7E-09 73.5 8.5 89 175-269 128-225 (325)
158 PRK14173 bifunctional 5,10-met 97.5 0.0014 3.1E-08 67.2 13.3 130 172-342 152-284 (287)
159 TIGR03376 glycerol3P_DH glycer 97.5 0.00039 8.3E-09 72.9 9.4 92 177-270 1-120 (342)
160 PRK14170 bifunctional 5,10-met 97.5 0.00064 1.4E-08 69.5 10.5 127 172-340 154-281 (284)
161 PRK14193 bifunctional 5,10-met 97.5 0.0016 3.5E-08 66.7 13.2 112 172-326 155-269 (284)
162 PRK14183 bifunctional 5,10-met 97.5 0.00046 9.9E-09 70.5 9.1 110 172-323 154-264 (281)
163 cd01078 NAD_bind_H4MPT_DH NADP 97.5 0.00031 6.7E-09 67.0 7.5 97 172-272 25-135 (194)
164 COG0240 GpsA Glycerol-3-phosph 97.5 0.00032 7E-09 72.9 8.0 97 176-274 2-113 (329)
165 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.0014 3E-08 69.5 12.7 144 176-327 10-190 (436)
166 PRK11730 fadB multifunctional 97.5 0.00099 2.1E-08 76.2 12.5 114 176-293 314-452 (715)
167 PRK14171 bifunctional 5,10-met 97.4 0.00077 1.7E-08 69.1 10.3 122 172-335 156-278 (288)
168 PF02153 PDH: Prephenate dehyd 97.4 0.00059 1.3E-08 68.5 9.2 124 190-318 1-133 (258)
169 PRK14982 acyl-ACP reductase; P 97.4 0.0005 1.1E-08 72.0 8.6 96 172-273 152-253 (340)
170 PRK14186 bifunctional 5,10-met 97.4 0.00098 2.1E-08 68.6 10.5 119 172-328 155-274 (297)
171 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.00052 1.1E-08 68.0 8.2 106 172-286 28-154 (227)
172 PRK07340 ornithine cyclodeamin 97.4 0.00034 7.3E-09 72.1 6.9 90 173-269 123-220 (304)
173 PRK14172 bifunctional 5,10-met 97.4 0.0011 2.5E-08 67.6 10.4 109 172-323 155-264 (278)
174 cd05313 NAD_bind_2_Glu_DH NAD( 97.4 0.0031 6.6E-08 63.7 13.3 156 172-340 35-221 (254)
175 PRK14177 bifunctional 5,10-met 97.4 0.00082 1.8E-08 68.8 9.3 77 172-268 156-233 (284)
176 PRK14166 bifunctional 5,10-met 97.4 0.00082 1.8E-08 68.7 9.2 113 172-326 154-267 (282)
177 PRK14620 NAD(P)H-dependent gly 97.3 0.0008 1.7E-08 69.3 9.2 90 177-268 2-108 (326)
178 PRK13301 putative L-aspartate 97.3 0.00081 1.8E-08 68.1 8.8 102 176-282 3-112 (267)
179 TIGR01921 DAP-DH diaminopimela 97.3 0.00054 1.2E-08 71.3 7.6 106 176-286 4-115 (324)
180 PRK12439 NAD(P)H-dependent gly 97.3 0.00057 1.2E-08 71.3 7.7 90 176-268 8-113 (341)
181 COG0190 FolD 5,10-methylene-te 97.3 0.0019 4.2E-08 65.8 11.1 113 172-326 153-266 (283)
182 PRK14187 bifunctional 5,10-met 97.3 0.001 2.3E-08 68.3 9.2 78 172-269 157-235 (294)
183 TIGR02440 FadJ fatty oxidation 97.3 0.0022 4.9E-08 73.2 12.8 114 176-293 305-444 (699)
184 TIGR02354 thiF_fam2 thiamine b 97.3 0.00087 1.9E-08 65.1 8.2 94 171-265 17-144 (200)
185 PRK11154 fadJ multifunctional 97.3 0.0046 1E-07 70.7 15.3 114 176-293 310-449 (708)
186 COG1712 Predicted dinucleotide 97.3 0.00068 1.5E-08 67.0 7.3 94 176-274 1-99 (255)
187 PLN02897 tetrahydrofolate dehy 97.3 0.00096 2.1E-08 69.8 8.9 118 172-326 211-330 (345)
188 PRK14180 bifunctional 5,10-met 97.3 0.0011 2.4E-08 67.8 9.1 77 172-268 155-232 (282)
189 PLN02616 tetrahydrofolate dehy 97.3 0.001 2.2E-08 70.0 9.0 119 171-326 227-347 (364)
190 TIGR02437 FadB fatty oxidation 97.3 0.0022 4.9E-08 73.3 12.5 104 176-282 314-442 (714)
191 COG0373 HemA Glutamyl-tRNA red 97.3 0.00078 1.7E-08 72.2 8.2 99 172-273 175-281 (414)
192 PRK13940 glutamyl-tRNA reducta 97.3 0.00076 1.7E-08 72.5 8.2 91 172-267 178-274 (414)
193 PRK14181 bifunctional 5,10-met 97.3 0.0013 2.7E-08 67.5 9.2 115 172-324 150-270 (287)
194 PRK14182 bifunctional 5,10-met 97.2 0.0013 2.8E-08 67.2 9.3 113 172-326 154-267 (282)
195 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.005 1.1E-07 60.7 13.0 107 172-286 20-145 (217)
196 TIGR02441 fa_ox_alpha_mit fatt 97.2 0.0041 9E-08 71.4 14.2 115 176-294 336-475 (737)
197 PF03720 UDPG_MGDP_dh_C: UDP-g 97.2 0.0011 2.4E-08 57.8 7.4 78 187-265 19-100 (106)
198 COG1064 AdhP Zn-dependent alco 97.2 0.00095 2.1E-08 69.9 7.8 88 174-267 166-260 (339)
199 PRK14184 bifunctional 5,10-met 97.2 0.0012 2.5E-08 67.7 8.2 77 172-268 154-235 (286)
200 PRK14174 bifunctional 5,10-met 97.2 0.0014 3E-08 67.5 8.7 78 172-269 156-238 (295)
201 PF13241 NAD_binding_7: Putati 97.2 0.00025 5.5E-09 61.4 2.8 88 172-266 4-91 (103)
202 TIGR01763 MalateDH_bact malate 97.2 0.0014 3.1E-08 67.5 8.6 115 176-291 2-147 (305)
203 PRK08618 ornithine cyclodeamin 97.1 0.0013 2.9E-08 68.2 8.2 88 174-268 126-223 (325)
204 PRK09310 aroDE bifunctional 3- 97.1 0.0017 3.7E-08 71.0 9.3 70 171-241 328-401 (477)
205 PRK00676 hemA glutamyl-tRNA re 97.1 0.0016 3.4E-08 68.3 8.5 93 172-269 171-264 (338)
206 TIGR02992 ectoine_eutC ectoine 97.1 0.002 4.4E-08 66.9 9.3 88 174-267 128-225 (326)
207 COG1250 FadB 3-hydroxyacyl-CoA 97.1 0.0017 3.8E-08 67.1 8.6 114 176-294 4-143 (307)
208 PRK14185 bifunctional 5,10-met 97.1 0.0022 4.7E-08 66.0 9.1 78 172-269 154-236 (293)
209 PF02558 ApbA: Ketopantoate re 97.1 0.00082 1.8E-08 61.0 5.4 111 178-291 1-125 (151)
210 PF01408 GFO_IDH_MocA: Oxidore 97.1 0.0012 2.5E-08 57.4 6.1 106 177-286 2-115 (120)
211 PRK12549 shikimate 5-dehydroge 97.1 0.0019 4.1E-08 66.0 8.6 69 173-241 125-203 (284)
212 PRK14031 glutamate dehydrogena 97.1 0.0069 1.5E-07 65.7 13.1 156 172-340 225-410 (444)
213 PTZ00117 malate dehydrogenase; 97.0 0.0027 5.8E-08 65.9 9.4 118 173-291 3-151 (319)
214 PRK13303 L-aspartate dehydroge 97.0 0.0026 5.5E-08 64.3 8.9 106 176-286 2-115 (265)
215 PRK06046 alanine dehydrogenase 97.0 0.0018 4E-08 67.2 7.8 87 175-268 129-225 (326)
216 KOG2653|consensus 97.0 0.011 2.5E-07 62.0 12.9 156 176-343 7-171 (487)
217 PRK06444 prephenate dehydrogen 97.0 0.0026 5.6E-08 61.9 7.8 61 176-269 1-62 (197)
218 PRK09414 glutamate dehydrogena 97.0 0.0037 7.9E-08 67.8 9.7 108 171-286 228-362 (445)
219 PRK14167 bifunctional 5,10-met 97.0 0.0035 7.7E-08 64.6 9.1 116 172-325 154-275 (297)
220 PRK06718 precorrin-2 dehydroge 96.9 0.0017 3.6E-08 63.2 6.4 71 171-241 6-81 (202)
221 PRK14168 bifunctional 5,10-met 96.9 0.0035 7.7E-08 64.6 9.0 130 172-339 158-294 (297)
222 smart00859 Semialdhyde_dh Semi 96.9 0.0019 4.2E-08 56.9 6.2 89 177-267 1-100 (122)
223 PRK06199 ornithine cyclodeamin 96.9 0.0032 6.8E-08 67.0 8.6 92 175-269 155-262 (379)
224 PRK08291 ectoine utilization p 96.9 0.0027 5.9E-08 66.0 8.0 87 174-266 131-227 (330)
225 COG1748 LYS9 Saccharopine dehy 96.9 0.003 6.4E-08 67.4 8.3 102 176-284 2-116 (389)
226 TIGR01470 cysG_Nterm siroheme 96.8 0.002 4.3E-08 62.8 5.8 89 171-265 5-99 (205)
227 PLN02477 glutamate dehydrogena 96.8 0.0047 1E-07 66.3 9.1 106 172-286 203-329 (410)
228 PRK14030 glutamate dehydrogena 96.8 0.02 4.3E-07 62.1 13.8 156 172-340 225-411 (445)
229 KOG0023|consensus 96.8 0.0023 4.9E-08 66.3 6.2 90 174-266 181-279 (360)
230 PRK08306 dipicolinate synthase 96.8 0.011 2.4E-07 60.7 11.4 110 175-293 2-121 (296)
231 PRK06823 ornithine cyclodeamin 96.8 0.0059 1.3E-07 63.4 9.1 88 175-268 128-224 (315)
232 PF13380 CoA_binding_2: CoA bi 96.7 0.0068 1.5E-07 53.9 8.1 100 176-286 1-104 (116)
233 cd00650 LDH_MDH_like NAD-depen 96.7 0.0041 8.8E-08 62.4 7.4 116 178-293 1-149 (263)
234 TIGR02356 adenyl_thiF thiazole 96.7 0.0033 7E-08 61.0 6.1 37 171-207 17-54 (202)
235 PRK01710 murD UDP-N-acetylmura 96.7 0.0098 2.1E-07 64.3 10.4 111 173-284 12-143 (458)
236 COG0334 GdhA Glutamate dehydro 96.7 0.0095 2.1E-07 63.7 10.0 148 172-341 204-380 (411)
237 PF02423 OCD_Mu_crystall: Orni 96.7 0.0024 5.2E-08 66.0 5.3 91 176-270 129-228 (313)
238 COG1004 Ugd Predicted UDP-gluc 96.6 0.031 6.6E-07 59.7 13.3 124 176-300 1-154 (414)
239 TIGR01809 Shik-DH-AROM shikima 96.6 0.0054 1.2E-07 62.5 7.5 69 173-241 123-201 (282)
240 PF01113 DapB_N: Dihydrodipico 96.6 0.0099 2.1E-07 53.2 8.3 101 177-282 2-114 (124)
241 PRK06719 precorrin-2 dehydroge 96.6 0.0073 1.6E-07 56.5 7.8 69 171-239 9-79 (157)
242 PRK07589 ornithine cyclodeamin 96.6 0.0076 1.6E-07 63.4 8.6 89 175-267 129-226 (346)
243 PRK00048 dihydrodipicolinate r 96.5 0.012 2.6E-07 59.2 9.3 64 176-239 2-69 (257)
244 PRK06407 ornithine cyclodeamin 96.5 0.0095 2E-07 61.4 8.8 88 175-268 117-214 (301)
245 PRK12475 thiamine/molybdopteri 96.5 0.004 8.7E-08 65.2 5.9 83 171-254 20-139 (338)
246 PTZ00079 NADP-specific glutama 96.5 0.035 7.5E-07 60.4 13.0 158 171-340 233-420 (454)
247 PF00208 ELFV_dehydrog: Glutam 96.5 0.0034 7.4E-08 62.9 4.9 156 172-340 29-214 (244)
248 PRK00779 ornithine carbamoyltr 96.5 0.058 1.2E-06 55.9 13.9 94 173-266 150-265 (304)
249 PF00185 OTCace: Aspartate/orn 96.4 0.024 5.2E-07 53.0 9.8 93 174-266 1-120 (158)
250 PRK11579 putative oxidoreducta 96.4 0.015 3.3E-07 60.4 9.4 66 176-241 5-75 (346)
251 PRK12548 shikimate 5-dehydroge 96.4 0.0074 1.6E-07 61.7 6.8 36 173-208 124-160 (289)
252 PRK06223 malate dehydrogenase; 96.4 0.011 2.4E-07 60.4 8.0 113 176-289 3-144 (307)
253 PTZ00082 L-lactate dehydrogena 96.3 0.014 3.1E-07 60.7 8.7 116 173-289 4-153 (321)
254 COG2423 Predicted ornithine cy 96.3 0.016 3.4E-07 60.7 9.0 87 175-267 130-226 (330)
255 TIGR03026 NDP-sugDHase nucleot 96.3 0.02 4.3E-07 61.2 10.1 89 172-265 310-409 (411)
256 TIGR00658 orni_carb_tr ornithi 96.3 0.089 1.9E-06 54.5 14.3 94 173-266 146-264 (304)
257 PRK00066 ldh L-lactate dehydro 96.3 0.012 2.6E-07 61.1 7.9 94 174-267 5-123 (315)
258 cd05291 HicDH_like L-2-hydroxy 96.3 0.015 3.3E-07 59.7 8.5 92 176-267 1-118 (306)
259 cd00757 ThiF_MoeB_HesA_family 96.2 0.01 2.2E-07 58.4 6.6 92 171-266 17-143 (228)
260 PRK05708 2-dehydropantoate 2-r 96.2 0.019 4.1E-07 59.0 8.7 112 176-290 3-127 (305)
261 PLN02353 probable UDP-glucose 96.2 0.028 6E-07 61.6 10.4 103 172-277 321-456 (473)
262 PF01118 Semialdhyde_dh: Semia 96.2 0.01 2.2E-07 52.6 5.6 87 177-268 1-99 (121)
263 PRK08269 3-hydroxybutyryl-CoA 96.1 0.089 1.9E-06 54.6 13.2 94 186-281 1-128 (314)
264 TIGR01850 argC N-acetyl-gamma- 96.1 0.018 3.9E-07 60.5 8.1 93 176-274 1-107 (346)
265 PRK02102 ornithine carbamoyltr 96.1 0.11 2.5E-06 54.4 14.0 94 173-266 153-273 (331)
266 PRK00683 murD UDP-N-acetylmura 96.1 0.016 3.5E-07 61.9 7.7 108 175-282 3-126 (418)
267 PLN02342 ornithine carbamoyltr 96.0 0.16 3.4E-06 53.7 14.6 94 173-266 192-307 (348)
268 PRK12749 quinate/shikimate deh 96.0 0.033 7.2E-07 57.1 9.3 37 172-208 121-158 (288)
269 PRK02472 murD UDP-N-acetylmura 96.0 0.059 1.3E-06 57.7 11.5 110 173-282 3-132 (447)
270 PRK03369 murD UDP-N-acetylmura 96.0 0.016 3.6E-07 63.3 7.3 110 173-282 10-141 (488)
271 COG0026 PurK Phosphoribosylami 96.0 0.021 4.5E-07 60.3 7.6 62 175-236 1-68 (375)
272 PRK04284 ornithine carbamoyltr 95.9 0.13 2.8E-06 54.0 13.4 94 173-266 153-274 (332)
273 COG0771 MurD UDP-N-acetylmuram 95.9 0.028 6.1E-07 61.1 8.7 124 173-297 5-157 (448)
274 TIGR02355 moeB molybdopterin s 95.9 0.02 4.4E-07 57.1 7.0 84 171-255 20-138 (240)
275 KOG2304|consensus 95.9 0.0046 1E-07 61.4 2.3 134 174-318 10-174 (298)
276 PRK00856 pyrB aspartate carbam 95.9 0.065 1.4E-06 55.6 10.8 64 173-237 154-220 (305)
277 PF02254 TrkA_N: TrkA-N domain 95.9 0.029 6.3E-07 48.5 7.1 84 178-263 1-93 (116)
278 COG1648 CysG Siroheme synthase 95.8 0.014 3E-07 57.4 5.5 89 171-265 8-102 (210)
279 TIGR02853 spore_dpaA dipicolin 95.8 0.083 1.8E-06 54.2 11.4 111 175-294 1-121 (287)
280 PRK01713 ornithine carbamoyltr 95.8 0.21 4.6E-06 52.4 14.4 95 173-267 154-276 (334)
281 PRK04207 glyceraldehyde-3-phos 95.8 0.027 5.9E-07 59.1 7.7 65 176-240 2-88 (341)
282 COG0169 AroE Shikimate 5-dehyd 95.7 0.043 9.3E-07 56.3 8.8 108 172-283 123-242 (283)
283 cd01339 LDH-like_MDH L-lactate 95.7 0.026 5.7E-07 57.7 7.3 90 178-268 1-117 (300)
284 PRK07232 bifunctional malic en 95.7 0.46 1E-05 54.9 17.9 209 91-343 126-355 (752)
285 PRK11064 wecC UDP-N-acetyl-D-m 95.7 0.032 7E-07 59.9 8.2 70 172-241 317-397 (415)
286 PRK05690 molybdopterin biosynt 95.7 0.019 4.1E-07 57.4 6.0 91 171-265 28-153 (245)
287 PRK01390 murD UDP-N-acetylmura 95.7 0.049 1.1E-06 58.8 9.6 112 172-283 6-139 (460)
288 PRK09880 L-idonate 5-dehydroge 95.7 0.055 1.2E-06 55.7 9.5 90 173-267 168-267 (343)
289 COG1004 Ugd Predicted UDP-gluc 95.7 0.041 8.8E-07 58.7 8.6 88 173-264 308-406 (414)
290 PRK00141 murD UDP-N-acetylmura 95.7 0.024 5.1E-07 61.8 7.1 113 172-284 12-147 (473)
291 PRK09496 trkA potassium transp 95.7 0.023 5E-07 60.7 6.8 87 176-264 1-98 (453)
292 PRK14106 murD UDP-N-acetylmura 95.7 0.067 1.5E-06 57.3 10.4 110 173-282 3-132 (450)
293 PRK11891 aspartate carbamoyltr 95.7 0.26 5.7E-06 53.4 14.7 66 173-238 239-316 (429)
294 TIGR03316 ygeW probable carbam 95.7 0.25 5.4E-06 52.4 14.3 66 172-237 167-252 (357)
295 KOG2711|consensus 95.7 0.041 8.8E-07 57.6 8.2 95 173-269 19-142 (372)
296 TIGR02964 xanthine_xdhC xanthi 95.6 0.048 1E-06 54.7 8.6 86 176-283 101-186 (246)
297 cd08230 glucose_DH Glucose deh 95.6 0.026 5.6E-07 58.3 6.9 89 174-267 172-270 (355)
298 PRK03515 ornithine carbamoyltr 95.6 0.19 4.1E-06 52.8 13.3 94 173-266 154-275 (336)
299 cd05297 GH4_alpha_glucosidase_ 95.6 0.022 4.7E-07 61.4 6.5 159 176-342 1-221 (423)
300 PRK02006 murD UDP-N-acetylmura 95.6 0.027 5.8E-07 61.6 7.2 113 173-285 5-148 (498)
301 cd05312 NAD_bind_1_malic_enz N 95.6 0.26 5.7E-06 50.5 13.8 165 172-341 22-222 (279)
302 PRK08644 thiamine biosynthesis 95.6 0.029 6.3E-07 54.9 6.6 37 171-207 24-61 (212)
303 cd05292 LDH_2 A subgroup of L- 95.6 0.02 4.4E-07 59.0 5.8 90 176-266 1-116 (308)
304 PRK07688 thiamine/molybdopteri 95.6 0.023 4.9E-07 59.6 6.2 37 171-207 20-57 (339)
305 TIGR01761 thiaz-red thiazoliny 95.6 0.063 1.4E-06 56.5 9.4 109 176-287 4-118 (343)
306 COG0569 TrkA K+ transport syst 95.5 0.02 4.3E-07 56.6 5.3 66 176-241 1-77 (225)
307 PF02629 CoA_binding: CoA bind 95.5 0.041 8.9E-07 47.0 6.4 72 176-248 4-79 (96)
308 PLN02968 Probable N-acetyl-gam 95.5 0.027 5.9E-07 60.0 6.4 100 173-278 36-146 (381)
309 PRK12862 malic enzyme; Reviewe 95.4 0.35 7.7E-06 56.0 15.6 184 114-341 160-361 (763)
310 cd05293 LDH_1 A subgroup of L- 95.4 0.058 1.3E-06 56.0 8.4 110 176-288 4-144 (312)
311 PRK06019 phosphoribosylaminoim 95.4 0.051 1.1E-06 57.3 8.1 61 176-236 3-69 (372)
312 TIGR00036 dapB dihydrodipicoli 95.4 0.082 1.8E-06 53.5 9.3 64 176-239 2-77 (266)
313 cd01486 Apg7 Apg7 is an E1-lik 95.4 0.047 1E-06 56.6 7.5 87 177-267 1-141 (307)
314 PLN02527 aspartate carbamoyltr 95.4 0.13 2.9E-06 53.3 10.9 92 173-265 149-265 (306)
315 COG1893 ApbA Ketopantoate redu 95.3 0.11 2.3E-06 53.9 10.0 139 176-321 1-154 (307)
316 PRK13814 pyrB aspartate carbam 95.3 0.31 6.7E-06 50.7 13.4 64 173-236 155-223 (310)
317 PRK10669 putative cation:proto 95.3 0.027 5.8E-07 62.6 5.9 87 176-264 418-513 (558)
318 PRK08762 molybdopterin biosynt 95.3 0.032 6.9E-07 59.1 6.2 37 171-207 131-168 (376)
319 PRK03659 glutathione-regulated 95.2 0.036 7.7E-07 62.4 6.7 91 175-267 400-499 (601)
320 PRK00421 murC UDP-N-acetylmura 95.2 0.044 9.5E-07 59.3 7.2 112 173-284 5-133 (461)
321 PLN02819 lysine-ketoglutarate 95.2 0.06 1.3E-06 64.1 8.5 67 174-240 568-658 (1042)
322 PRK08328 hypothetical protein; 95.2 0.053 1.2E-06 53.7 7.0 37 171-207 23-60 (231)
323 TIGR00670 asp_carb_tr aspartat 95.2 0.15 3.3E-06 52.7 10.6 93 173-266 148-263 (301)
324 PRK02255 putrescine carbamoylt 95.1 0.12 2.6E-06 54.3 9.9 65 172-236 151-228 (338)
325 PRK00436 argC N-acetyl-gamma-g 95.1 0.051 1.1E-06 57.0 7.1 93 176-273 3-106 (343)
326 cd00300 LDH_like L-lactate deh 95.1 0.046 9.9E-07 56.2 6.6 89 178-267 1-116 (300)
327 PF13460 NAD_binding_10: NADH( 95.1 0.044 9.5E-07 50.7 5.9 65 178-243 1-73 (183)
328 PRK14027 quinate/shikimate deh 95.1 0.077 1.7E-06 54.3 8.2 69 173-241 125-205 (283)
329 cd00762 NAD_bind_malic_enz NAD 95.1 0.38 8.3E-06 48.7 12.9 165 172-341 22-223 (254)
330 TIGR03366 HpnZ_proposed putati 95.1 0.07 1.5E-06 53.4 7.7 88 174-266 120-218 (280)
331 COG5322 Predicted dehydrogenas 95.1 0.12 2.6E-06 52.7 9.2 99 171-274 163-269 (351)
332 PRK06270 homoserine dehydrogen 95.1 0.075 1.6E-06 55.7 8.1 111 176-286 3-146 (341)
333 PF04016 DUF364: Domain of unk 95.0 0.055 1.2E-06 50.2 6.2 85 173-267 9-96 (147)
334 PF13478 XdhC_C: XdhC Rossmann 95.0 0.042 9.1E-07 50.4 5.3 79 178-282 1-79 (136)
335 PRK04690 murD UDP-N-acetylmura 94.9 0.053 1.2E-06 59.0 6.9 110 173-282 6-139 (468)
336 PLN02520 bifunctional 3-dehydr 94.9 0.084 1.8E-06 58.6 8.5 37 172-208 376-412 (529)
337 PRK03562 glutathione-regulated 94.9 0.068 1.5E-06 60.4 7.9 90 175-266 400-498 (621)
338 PRK12562 ornithine carbamoyltr 94.9 0.64 1.4E-05 48.9 14.5 95 173-267 154-276 (334)
339 PRK08300 acetaldehyde dehydrog 94.9 0.086 1.9E-06 54.6 7.9 87 175-266 4-101 (302)
340 cd05188 MDR Medium chain reduc 94.9 0.12 2.7E-06 49.7 8.6 91 174-269 134-235 (271)
341 COG0281 SfcA Malic enzyme [Ene 94.9 0.35 7.6E-06 52.1 12.5 184 113-341 165-370 (432)
342 TIGR01087 murD UDP-N-acetylmur 94.9 0.15 3.2E-06 54.6 9.9 107 177-284 1-128 (433)
343 PRK05600 thiamine biosynthesis 94.8 0.06 1.3E-06 57.2 6.7 84 171-255 37-155 (370)
344 PRK03803 murD UDP-N-acetylmura 94.8 0.067 1.5E-06 57.5 7.1 109 174-282 5-132 (448)
345 PRK05597 molybdopterin biosynt 94.7 0.069 1.5E-06 56.3 6.7 37 171-207 24-61 (355)
346 PRK05086 malate dehydrogenase; 94.7 0.11 2.4E-06 53.8 8.2 93 176-268 1-120 (312)
347 COG0673 MviM Predicted dehydro 94.7 0.058 1.3E-06 55.1 6.0 66 176-241 4-78 (342)
348 PRK10637 cysG siroheme synthas 94.7 0.072 1.6E-06 58.0 7.0 91 171-266 8-103 (457)
349 cd01492 Aos1_SUMO Ubiquitin ac 94.7 0.11 2.3E-06 50.4 7.4 37 171-207 17-54 (197)
350 PRK05562 precorrin-2 dehydroge 94.7 0.052 1.1E-06 53.9 5.4 89 171-265 21-115 (223)
351 TIGR01381 E1_like_apg7 E1-like 94.6 0.1 2.2E-06 59.0 8.2 119 125-266 307-480 (664)
352 cd01483 E1_enzyme_family Super 94.6 0.25 5.4E-06 44.7 9.5 32 177-208 1-33 (143)
353 TIGR02822 adh_fam_2 zinc-bindi 94.6 0.097 2.1E-06 53.9 7.5 89 174-267 165-255 (329)
354 cd01487 E1_ThiF_like E1_ThiF_l 94.6 0.094 2E-06 49.8 6.8 31 177-207 1-32 (174)
355 PRK04308 murD UDP-N-acetylmura 94.6 0.1 2.2E-06 56.2 7.7 112 173-284 3-136 (445)
356 PRK12861 malic enzyme; Reviewe 94.5 0.3 6.6E-06 56.4 11.9 182 115-341 157-357 (764)
357 TIGR03215 ac_ald_DH_ac acetald 94.5 0.14 3E-06 52.7 8.2 66 176-241 2-75 (285)
358 PRK09496 trkA potassium transp 94.5 0.13 2.9E-06 54.9 8.4 89 173-263 229-328 (453)
359 PF03435 Saccharop_dh: Sacchar 94.5 0.034 7.4E-07 58.6 3.9 64 178-241 1-78 (386)
360 PRK08223 hypothetical protein; 94.5 0.12 2.6E-06 53.2 7.6 36 171-206 23-59 (287)
361 PRK05786 fabG 3-ketoacyl-(acyl 94.5 0.074 1.6E-06 51.1 5.8 36 173-208 3-39 (238)
362 PLN03209 translocon at the inn 94.4 0.19 4.2E-06 56.3 9.8 37 173-209 78-115 (576)
363 CHL00194 ycf39 Ycf39; Provisio 94.4 0.12 2.7E-06 52.7 7.6 63 176-238 1-72 (317)
364 PF05222 AlaDh_PNT_N: Alanine 94.4 0.23 5E-06 45.5 8.5 98 188-295 17-119 (136)
365 PRK07411 hypothetical protein; 94.3 0.098 2.1E-06 55.9 6.9 87 171-258 34-155 (390)
366 TIGR02717 AcCoA-syn-alpha acet 94.2 0.28 6E-06 53.4 10.3 107 173-286 5-123 (447)
367 PRK08265 short chain dehydroge 94.2 0.1 2.2E-06 51.5 6.4 38 172-209 3-41 (261)
368 COG4007 Predicted dehydrogenas 94.1 0.19 4.1E-06 51.1 7.9 90 187-280 33-128 (340)
369 cd08239 THR_DH_like L-threonin 94.1 0.15 3.2E-06 52.0 7.6 89 174-267 163-263 (339)
370 cd01485 E1-1_like Ubiquitin ac 94.1 0.12 2.7E-06 50.0 6.5 37 171-207 15-52 (198)
371 PRK12550 shikimate 5-dehydroge 94.1 0.12 2.7E-06 52.6 6.8 63 175-240 122-188 (272)
372 PLN02586 probable cinnamyl alc 94.1 0.23 5E-06 51.8 9.0 89 174-267 183-279 (360)
373 TIGR01161 purK phosphoribosyla 94.0 0.16 3.5E-06 52.8 7.7 60 177-236 1-66 (352)
374 PLN02948 phosphoribosylaminoim 94.0 0.21 4.6E-06 56.1 8.9 69 171-239 18-92 (577)
375 PF00056 Ldh_1_N: lactate/mala 94.0 0.052 1.1E-06 49.7 3.5 96 176-273 1-123 (141)
376 PLN02214 cinnamoyl-CoA reducta 94.0 0.21 4.5E-06 51.8 8.3 68 172-239 7-90 (342)
377 PRK15182 Vi polysaccharide bio 93.9 0.27 5.9E-06 53.2 9.4 93 172-270 311-416 (425)
378 PRK07806 short chain dehydroge 93.9 0.19 4E-06 48.7 7.4 36 173-208 4-40 (248)
379 TIGR01202 bchC 2-desacetyl-2-h 93.9 0.15 3.2E-06 51.9 7.0 86 174-266 144-231 (308)
380 PRK04523 N-acetylornithine car 93.9 0.71 1.5E-05 48.5 12.1 66 173-238 166-252 (335)
381 cd00755 YgdL_like Family of ac 93.9 0.45 9.8E-06 47.4 10.2 37 171-207 7-44 (231)
382 PRK15057 UDP-glucose 6-dehydro 93.8 0.2 4.2E-06 53.6 7.9 64 173-238 294-367 (388)
383 PRK06128 oxidoreductase; Provi 93.7 0.23 4.9E-06 50.2 8.0 36 172-207 52-88 (300)
384 PLN02178 cinnamyl-alcohol dehy 93.7 0.22 4.7E-06 52.5 8.1 88 174-266 178-273 (375)
385 PRK01368 murD UDP-N-acetylmura 93.7 0.15 3.3E-06 55.4 7.0 108 174-282 5-128 (454)
386 PRK07576 short chain dehydroge 93.7 0.13 2.9E-06 50.8 6.0 38 171-208 5-43 (264)
387 PRK03806 murD UDP-N-acetylmura 93.6 0.18 3.9E-06 54.0 7.4 109 173-282 4-129 (438)
388 PRK07878 molybdopterin biosynt 93.6 0.16 3.6E-06 54.2 7.0 84 171-255 38-156 (392)
389 PRK07231 fabG 3-ketoacyl-(acyl 93.6 0.14 3.1E-06 49.3 6.0 37 173-209 3-40 (251)
390 PRK06349 homoserine dehydrogen 93.6 0.29 6.2E-06 52.9 8.9 107 176-286 4-125 (426)
391 TIGR03201 dearomat_had 6-hydro 93.6 0.21 4.5E-06 51.6 7.5 45 174-218 166-211 (349)
392 cd01338 MDH_choloroplast_like 93.5 0.41 9E-06 49.9 9.7 100 176-277 3-137 (322)
393 cd00704 MDH Malate dehydrogena 93.5 0.44 9.5E-06 49.8 9.8 99 177-277 2-135 (323)
394 PTZ00325 malate dehydrogenase; 93.5 0.18 3.8E-06 52.7 6.9 96 173-268 6-127 (321)
395 PF03447 NAD_binding_3: Homose 93.5 0.12 2.6E-06 45.2 4.7 100 182-286 1-113 (117)
396 PRK06392 homoserine dehydrogen 93.4 0.38 8.3E-06 50.3 9.2 109 177-286 2-137 (326)
397 PRK14804 ornithine carbamoyltr 93.4 0.54 1.2E-05 48.9 10.2 65 173-237 151-225 (311)
398 PRK15076 alpha-galactosidase; 93.4 0.12 2.5E-06 56.1 5.6 113 176-289 2-169 (431)
399 cd05294 LDH-like_MDH_nadp A la 93.4 0.51 1.1E-05 48.8 10.0 110 176-288 1-145 (309)
400 PRK10206 putative oxidoreducta 93.4 0.14 3.1E-06 53.4 6.0 65 177-241 3-75 (344)
401 COG3288 PntA NAD/NADP transhyd 93.4 0.15 3.3E-06 52.8 6.0 94 172-266 161-281 (356)
402 cd05283 CAD1 Cinnamyl alcohol 93.4 0.27 5.9E-06 50.2 7.9 89 174-267 169-264 (337)
403 PRK01438 murD UDP-N-acetylmura 93.4 0.51 1.1E-05 51.2 10.4 111 172-282 13-146 (480)
404 PRK03815 murD UDP-N-acetylmura 93.3 0.45 9.7E-06 51.0 9.6 104 176-282 1-113 (401)
405 TIGR01532 E4PD_g-proteo D-eryt 93.3 0.2 4.3E-06 52.5 6.8 30 177-206 1-34 (325)
406 PRK14851 hypothetical protein; 93.2 0.73 1.6E-05 52.9 11.6 162 171-345 39-257 (679)
407 PRK12742 oxidoreductase; Provi 93.1 0.35 7.7E-06 46.3 7.8 36 172-207 3-39 (237)
408 PRK07877 hypothetical protein; 93.0 0.17 3.6E-06 58.3 6.3 83 171-255 103-220 (722)
409 cd08237 ribitol-5-phosphate_DH 93.0 0.38 8.3E-06 49.6 8.4 89 174-266 163-256 (341)
410 PLN02662 cinnamyl-alcohol dehy 93.0 0.28 6E-06 49.5 7.2 35 174-208 3-38 (322)
411 PLN00106 malate dehydrogenase 93.0 0.24 5.2E-06 51.8 6.8 97 173-269 16-138 (323)
412 PF05368 NmrA: NmrA-like famil 92.9 0.16 3.6E-06 49.1 5.3 64 178-241 1-75 (233)
413 PRK04663 murD UDP-N-acetylmura 92.9 0.6 1.3E-05 50.3 10.1 110 173-282 4-132 (438)
414 PRK07200 aspartate/ornithine c 92.9 0.56 1.2E-05 50.4 9.6 66 172-237 184-269 (395)
415 PLN02740 Alcohol dehydrogenase 92.8 0.4 8.6E-06 50.3 8.3 45 174-218 198-244 (381)
416 cd08281 liver_ADH_like1 Zinc-d 92.8 0.34 7.3E-06 50.5 7.7 89 174-267 191-291 (371)
417 TIGR03649 ergot_EASG ergot alk 92.7 0.36 7.9E-06 48.1 7.6 65 177-241 1-78 (285)
418 TIGR01772 MDH_euk_gproteo mala 92.7 0.33 7.3E-06 50.5 7.4 95 177-273 1-121 (312)
419 TIGR03736 PRTRC_ThiF PRTRC sys 92.7 0.5 1.1E-05 47.6 8.4 91 174-267 10-142 (244)
420 PRK06153 hypothetical protein; 92.7 0.41 8.8E-06 51.3 8.2 36 171-206 172-208 (393)
421 TIGR02825 B4_12hDH leukotriene 92.7 0.37 7.9E-06 48.9 7.6 88 174-267 138-238 (325)
422 PLN02602 lactate dehydrogenase 92.7 0.3 6.4E-06 51.6 7.1 91 176-267 38-155 (350)
423 COG1063 Tdh Threonine dehydrog 92.6 0.48 1E-05 49.6 8.6 90 174-268 168-271 (350)
424 cd01336 MDH_cytoplasmic_cytoso 92.6 0.27 5.8E-06 51.3 6.6 96 177-274 4-134 (325)
425 cd08234 threonine_DH_like L-th 92.5 0.27 5.8E-06 49.7 6.3 91 174-269 159-260 (334)
426 PRK06182 short chain dehydroge 92.4 0.28 6.1E-06 48.5 6.2 36 174-209 2-38 (273)
427 PRK04148 hypothetical protein; 92.3 0.26 5.7E-06 45.3 5.4 68 173-241 15-88 (134)
428 PF03949 Malic_M: Malic enzyme 92.3 0.57 1.2E-05 47.5 8.3 181 129-340 4-222 (255)
429 cd08296 CAD_like Cinnamyl alco 92.3 0.38 8.1E-06 49.1 7.2 89 174-267 163-260 (333)
430 TIGR03451 mycoS_dep_FDH mycoth 92.3 0.49 1.1E-05 49.0 8.1 89 174-267 176-277 (358)
431 cd08245 CAD Cinnamyl alcohol d 92.3 0.38 8.2E-06 48.6 7.1 89 174-267 162-257 (330)
432 PRK12937 short chain dehydroge 92.2 0.59 1.3E-05 44.9 8.1 36 173-208 3-39 (245)
433 TIGR00112 proC pyrroline-5-car 92.2 0.4 8.7E-06 47.8 7.1 80 199-282 10-91 (245)
434 cd08255 2-desacetyl-2-hydroxye 92.2 0.47 1E-05 46.6 7.5 90 174-268 97-192 (277)
435 cd08274 MDR9 Medium chain dehy 92.1 0.4 8.6E-06 48.8 7.1 87 174-266 177-273 (350)
436 PLN02514 cinnamyl-alcohol dehy 92.1 0.57 1.2E-05 48.7 8.3 89 174-267 180-276 (357)
437 PRK08192 aspartate carbamoyltr 92.0 0.81 1.8E-05 48.2 9.4 66 172-237 156-233 (338)
438 PRK08324 short chain dehydroge 92.0 0.31 6.8E-06 55.5 6.8 38 171-208 418-456 (681)
439 PRK12769 putative oxidoreducta 92.0 0.48 1E-05 53.8 8.3 35 173-207 325-359 (654)
440 PF00899 ThiF: ThiF family; I 92.0 0.17 3.6E-06 45.5 3.7 33 175-207 2-35 (135)
441 COG2344 AT-rich DNA-binding pr 92.0 0.15 3.2E-06 49.5 3.5 63 177-240 86-156 (211)
442 PRK10537 voltage-gated potassi 92.0 0.37 8.1E-06 51.7 6.9 87 174-263 239-333 (393)
443 cd05290 LDH_3 A subgroup of L- 91.9 0.23 5.1E-06 51.4 5.2 92 177-268 1-121 (307)
444 PRK13376 pyrB bifunctional asp 91.9 0.86 1.9E-05 50.7 9.7 61 173-233 172-244 (525)
445 cd01337 MDH_glyoxysomal_mitoch 91.9 0.52 1.1E-05 49.0 7.6 93 176-268 1-119 (310)
446 TIGR01758 MDH_euk_cyt malate d 91.8 0.32 7E-06 50.8 6.1 97 177-275 1-132 (324)
447 PRK14874 aspartate-semialdehyd 91.8 0.45 9.8E-06 49.7 7.1 88 175-267 1-95 (334)
448 PLN03154 putative allyl alcoho 91.7 0.56 1.2E-05 48.7 7.8 87 174-266 158-258 (348)
449 PLN02819 lysine-ketoglutarate 91.7 0.2 4.4E-06 59.7 4.9 92 173-266 201-338 (1042)
450 PLN02383 aspartate semialdehyd 91.7 0.5 1.1E-05 49.8 7.4 87 174-266 6-100 (344)
451 cd08301 alcohol_DH_plants Plan 91.6 0.66 1.4E-05 48.2 8.2 45 174-218 187-233 (369)
452 TIGR02818 adh_III_F_hyde S-(hy 91.6 0.62 1.3E-05 48.6 8.0 45 174-218 185-231 (368)
453 PRK15181 Vi polysaccharide bio 91.6 0.38 8.2E-06 49.9 6.3 37 172-208 12-49 (348)
454 cd08242 MDR_like Medium chain 91.5 0.53 1.2E-05 47.4 7.2 88 174-266 155-245 (319)
455 cd08260 Zn_ADH6 Alcohol dehydr 91.5 0.73 1.6E-05 47.0 8.3 90 174-268 165-266 (345)
456 PRK13529 malate dehydrogenase; 91.5 4.5 9.8E-05 45.4 14.8 217 89-341 237-499 (563)
457 PLN02695 GDP-D-mannose-3',5'-e 91.5 0.32 6.9E-06 51.1 5.8 65 174-238 20-93 (370)
458 PRK05678 succinyl-CoA syntheta 91.5 1.2 2.6E-05 46.0 9.8 106 175-286 8-118 (291)
459 cd08233 butanediol_DH_like (2R 91.5 0.84 1.8E-05 46.8 8.7 89 174-267 172-273 (351)
460 TIGR01082 murC UDP-N-acetylmur 91.4 0.38 8.3E-06 51.9 6.3 107 178-284 2-125 (448)
461 PRK05442 malate dehydrogenase; 91.4 1.6 3.5E-05 45.6 10.7 100 176-277 5-139 (326)
462 cd08269 Zn_ADH9 Alcohol dehydr 91.3 0.74 1.6E-05 45.7 7.9 89 174-267 129-230 (312)
463 cd08289 MDR_yhfp_like Yhfp put 91.3 0.63 1.4E-05 46.7 7.4 35 174-208 146-181 (326)
464 KOG0022|consensus 91.2 0.27 5.8E-06 51.3 4.6 50 174-223 192-243 (375)
465 cd08293 PTGR2 Prostaglandin re 91.2 0.8 1.7E-05 46.6 8.2 86 175-266 155-254 (345)
466 PRK02705 murD UDP-N-acetylmura 91.2 1.3 2.8E-05 47.8 10.1 107 177-283 2-134 (459)
467 cd08295 double_bond_reductase_ 91.2 0.72 1.6E-05 47.2 7.8 88 174-267 151-252 (338)
468 PRK11863 N-acetyl-gamma-glutam 91.2 0.65 1.4E-05 48.5 7.5 77 176-266 3-81 (313)
469 TIGR01296 asd_B aspartate-semi 91.2 0.39 8.5E-06 50.4 6.0 85 177-266 1-92 (339)
470 TIGR01759 MalateDH-SF1 malate 91.1 0.46 1E-05 49.6 6.4 98 176-275 4-136 (323)
471 cd08277 liver_alcohol_DH_like 91.1 0.76 1.7E-05 47.8 8.1 36 173-208 183-219 (365)
472 PRK08177 short chain dehydroge 91.1 0.83 1.8E-05 43.8 7.7 34 176-209 2-36 (225)
473 cd05284 arabinose_DH_like D-ar 91.0 0.88 1.9E-05 46.2 8.2 91 174-269 167-269 (340)
474 PRK12809 putative oxidoreducta 91.0 0.58 1.3E-05 53.0 7.5 35 174-208 309-343 (639)
475 PRK10309 galactitol-1-phosphat 90.9 0.5 1.1E-05 48.5 6.4 35 174-208 160-195 (347)
476 TIGR02622 CDP_4_6_dhtase CDP-g 90.9 0.47 1E-05 49.0 6.2 37 173-209 2-39 (349)
477 cd01491 Ube1_repeat1 Ubiquitin 90.8 1.1 2.4E-05 46.2 8.7 38 171-208 15-53 (286)
478 PRK07533 enoyl-(acyl carrier p 90.8 1.5 3.3E-05 43.2 9.5 37 172-208 7-46 (258)
479 PRK14852 hypothetical protein; 90.8 1 2.3E-05 53.4 9.4 166 171-344 328-545 (989)
480 PLN02989 cinnamyl-alcohol dehy 90.7 0.73 1.6E-05 46.8 7.3 66 174-239 4-86 (325)
481 PRK06398 aldose dehydrogenase; 90.7 0.53 1.2E-05 46.3 6.1 38 172-209 3-41 (258)
482 PRK08040 putative semialdehyde 90.7 0.61 1.3E-05 49.1 6.8 86 174-266 3-97 (336)
483 cd08231 MDR_TM0436_like Hypoth 90.7 0.61 1.3E-05 48.1 6.8 89 174-267 177-281 (361)
484 PRK07523 gluconate 5-dehydroge 90.7 0.54 1.2E-05 45.8 6.1 37 172-208 7-44 (255)
485 PLN02657 3,8-divinyl protochlo 90.6 0.44 9.6E-06 50.6 5.8 38 171-208 56-94 (390)
486 PRK12771 putative glutamate sy 90.6 0.84 1.8E-05 50.8 8.2 35 173-207 135-169 (564)
487 PLN00141 Tic62-NAD(P)-related 90.6 0.4 8.8E-06 47.1 5.2 37 172-208 14-51 (251)
488 PLN02896 cinnamyl-alcohol dehy 90.6 0.45 9.8E-06 49.2 5.7 38 171-208 6-44 (353)
489 cd08264 Zn_ADH_like2 Alcohol d 90.6 0.84 1.8E-05 46.0 7.6 85 174-267 162-254 (325)
490 PRK14573 bifunctional D-alanyl 90.6 1.3 2.8E-05 51.7 10.0 109 176-284 5-130 (809)
491 TIGR01214 rmlD dTDP-4-dehydror 90.5 0.48 1E-05 47.0 5.7 56 177-239 1-59 (287)
492 PLN02827 Alcohol dehydrogenase 90.5 0.98 2.1E-05 47.5 8.3 45 174-218 193-239 (378)
493 PF00070 Pyr_redox: Pyridine n 90.5 0.5 1.1E-05 38.5 4.8 33 177-209 1-33 (80)
494 PRK06728 aspartate-semialdehyd 90.4 0.77 1.7E-05 48.6 7.3 85 174-266 4-99 (347)
495 PRK08261 fabG 3-ketoacyl-(acyl 90.3 1.1 2.4E-05 48.1 8.6 37 172-208 207-244 (450)
496 PLN02427 UDP-apiose/xylose syn 90.3 0.5 1.1E-05 49.6 5.8 38 171-208 10-49 (386)
497 TIGR01472 gmd GDP-mannose 4,6- 90.3 0.75 1.6E-05 47.3 7.0 33 176-208 1-34 (343)
498 PRK06550 fabG 3-ketoacyl-(acyl 90.2 0.78 1.7E-05 43.9 6.7 36 173-208 3-39 (235)
499 PRK06523 short chain dehydroge 90.2 0.47 1E-05 46.3 5.2 38 172-209 6-44 (260)
500 PRK07424 bifunctional sterol d 90.2 0.44 9.5E-06 51.4 5.3 37 172-208 175-212 (406)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-68 Score=549.48 Aligned_cols=284 Identities=39% Similarity=0.546 Sum_probs=257.0
Q ss_pred hHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHH
Q psy7383 60 TSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN 139 (501)
Q Consensus 60 ~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~ 139 (501)
.+++. +.+.+++++++ ...++++++++++++||||++.++|+||||+++++++||.|+|+|+.|+.+||||++++||+
T Consensus 36 ~~~l~-~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~ 113 (324)
T COG0111 36 EEELL-EALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLA 113 (324)
T ss_pred hHHHH-hhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHH
Confidence 33444 34466776666 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce
Q psy7383 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT 219 (501)
Q Consensus 140 l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~ 219 (501)
++|++..+++.+++|.|.+.. ....+|+||||||||+|+||+.+|++|++|||+|++||++.........++.
T Consensus 114 ~~R~~~~~~~~~~~g~W~~~~-------~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~ 186 (324)
T COG0111 114 LARRIPDADASQRRGEWDRKA-------FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVV 186 (324)
T ss_pred HhcCchhhHHHHHcCCccccc-------cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccce
Confidence 999999999999999997511 1234799999999999999999999999999999999998766555556677
Q ss_pred ecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 220 RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 220 ~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
...+|+++|++||||++|+|+|++|++|||++.|++||+|++|||++||.+||++||+++|++|+|+||+||||++||++
T Consensus 187 ~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~ 266 (324)
T COG0111 187 GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLP 266 (324)
T ss_pred ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCC
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 300 VFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 300 ~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
. +||||++|||++|||+|+.|.|+.+++..++++||.+|++|+.+.+..+.|+
T Consensus 267 ~-~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~~~~v~ 319 (324)
T COG0111 267 A-DSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVNNAPEVD 319 (324)
T ss_pred C-CChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 7 7999999999999999999999999999999999999999996543233343
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.5e-67 Score=541.23 Aligned_cols=316 Identities=30% Similarity=0.422 Sum_probs=269.6
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
+++|++.+.... ...+.|++..++.+.+. .+.+++.+ .+.++++++.+ ...+++++++++|+||||++.|+|+|
T Consensus 2 ~~~vl~~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~~~~~-~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d 78 (323)
T PRK15409 2 KPSVILYKALPD-DLLQRLEEHFTVTQVANLSPETVEQHAA-AFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYD 78 (323)
T ss_pred CceEEEeCCCCH-HHHHHHHhcCcEEEcCCCCCCCHHHHHH-HhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecc
Confidence 456777775431 22345555445544432 23345544 44677776654 45799999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
+||+++|+++||.|+|++|+++++||||++++||+++|++..+++.+++|.|...... .....+|+||||||||+|
T Consensus 79 ~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~----~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 79 NFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGP----DWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred cccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCcc----ccccCCCCCCEEEEEccc
Confidence 9999999999999999999999999999999999999999999999999998532100 011357999999999999
Q ss_pred hHHHHHHHHHH-hCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEE
Q psy7383 185 RIGSAVALRAK-AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 185 ~IG~~iA~~L~-afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI 263 (501)
+||+.+|++|+ +|||+|++||++.........+++.. +++|++++||+|++|||+|++|++|||++.|++||+|++||
T Consensus 155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 155 RIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEec-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 99999999998 99999999998865444445566654 89999999999999999999999999999999999999999
Q ss_pred EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 264 NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 264 NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
|++||++||++||+++|++|+|+||+||||++||++. ++|||++|||++|||+|++|.+++.++.+++++||.+|++|+
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 312 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSV-DSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGK 312 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCC-CchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999986 899999999999999999999999999999999999999998
Q ss_pred CCCCCccccccc
Q psy7383 344 IPDCLRNCVNKE 355 (501)
Q Consensus 344 ~p~~l~N~Vn~e 355 (501)
.| .|+||++
T Consensus 313 ~~---~~~vn~~ 321 (323)
T PRK15409 313 VE---KNCVNPQ 321 (323)
T ss_pred CC---CcccCcc
Confidence 54 4778865
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=8.3e-67 Score=535.25 Aligned_cols=304 Identities=40% Similarity=0.566 Sum_probs=264.9
Q ss_pred cccccccceEEEcCCC-ChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeec
Q psy7383 43 MPILKDVATVAFCDAQ-STSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNV 121 (501)
Q Consensus 43 ~~~L~~~~~v~~~~~~-~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~ 121 (501)
.+.|.+..++.+++.. ..+....+..++++++++.....+++++++++|+||+|++.++||||||+++|+++||.|+|+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnv 95 (324)
T COG1052 16 LERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNV 95 (324)
T ss_pred HHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeC
Confidence 3444444555555443 111122334567888777767889999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEE
Q psy7383 122 PGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201 (501)
Q Consensus 122 pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~V 201 (501)
|++++++||||+++|||++.|++.+.++.+|+|+|.+... .......+++|||+||||+|+||+++|+++++|||+|
T Consensus 96 p~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~---~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v 172 (324)
T COG1052 96 PGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGG---PDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKV 172 (324)
T ss_pred CCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCC---cccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999965320 0112235799999999999999999999999999999
Q ss_pred EEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 202 i~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
++|||+..++.++..+..++ +++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||+
T Consensus 173 ~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 173 LYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred EEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999876555556667776 49999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCCCC---eEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccc
Q psy7383 282 QGRIRAAALDVHESEPYNVFQGNLKDAPN---ILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354 (501)
Q Consensus 282 ~g~I~GAaLDVfe~EPl~~~~~pL~~~pN---VilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~ 354 (501)
+|+|+||+||||+.||... +++|++++| |++|||+||+|.+++.+|.+.+++|+++|++|+.+. |+|++
T Consensus 252 ~g~i~gaglDV~e~Ep~~~-d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~---~~v~~ 323 (324)
T COG1052 252 SGKIAGAGLDVFENEPALF-DHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPP---NEVNP 323 (324)
T ss_pred hCCcceEEeeecCCCCCCC-ChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCC
Confidence 9999999999999999875 799998887 999999999999999999999999999999999765 45554
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3e-66 Score=529.08 Aligned_cols=304 Identities=31% Similarity=0.512 Sum_probs=260.3
Q ss_pred EEEecCCCC-CcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 31 VALLDGRDC-SIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 31 IvvLd~~~~-~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
|++++...+ ...++.|++..++.+....+++++.+. +.++++++++ ...+++++++++|+||||++.++|+|+||++
T Consensus 3 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 80 (311)
T PRK08410 3 IVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIER-IKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIE 80 (311)
T ss_pred EEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHH-hCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHH
Confidence 666665432 234456666555555444445666544 4667766655 4679999999999999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+|+++||.|+|++|+++.+||||++++||+++|++..+++.++++.|...... .......++|+||||||||+|+||+.
T Consensus 81 ~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 81 YAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIF-THISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCc-cccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999998532110 00011235899999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+|+++++|||+|++|||+.... ..++.. .+|+|++++||+|++|||+|++|++|||++.|++||+|++|||+|||+
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~~---~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKNK---NEEYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHHhhcCCEEEEECCCcccc---ccCcee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999974321 224443 489999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCC---CCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA---PNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 270 vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~---pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
+||++||+++|++|+|+ |+||||++||++. ++|||.+ ||||+|||+|++|.++..++.+++++||.+|++|+
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~-~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEK-NHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCC-CChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999 9999999999987 8999987 89999999999999999999999999999999986
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-65 Score=524.10 Aligned_cols=303 Identities=34% Similarity=0.499 Sum_probs=258.1
Q ss_pred EEEecCCCC---Ccccccccc-cceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccccc
Q psy7383 31 VALLDGRDC---SIEMPILKD-VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI 106 (501)
Q Consensus 31 IvvLd~~~~---~~e~~~L~~-~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~I 106 (501)
|++++.... ....+.|++ +.++.+....+.+++.+ .+.++++++.+ ...+++++++++|+||||++.++|+|+|
T Consensus 3 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 3 AVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAE-RLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred EEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHH-HhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 667765432 123344543 33455544444566654 45677766555 4579999999999999999999999999
Q ss_pred chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchH
Q psy7383 107 DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186 (501)
Q Consensus 107 D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~I 186 (501)
|+++|.++||.|+|++|+++++||||++++||+++|++..+++.+++|.|....... ......++|+||||||||+|+|
T Consensus 81 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~-~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFC-LLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred CHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccc-cccCcccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999985321100 0011235799999999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|+.+|++|++|||+|++||++.... .... .+|+|++++||+|++|||+|++|++|||++.|++||+|++|||+|
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~-~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDR-LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccc-cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 9999999999999999999864321 1222 389999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCC--CCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD--APNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 267 RG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~--~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
||++||++||+++|++|+|+||+||||++||++. ++|||. +|||++|||+|++|.++.+++.+++++||++|++|+
T Consensus 234 RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~-~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 311 (317)
T PRK06487 234 RGGLVDEQALADALRSGHLGGAATDVLSVEPPVN-GNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGK 311 (317)
T ss_pred CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCC-CCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999986 799995 899999999999999999999999999999999997
No 6
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.6e-65 Score=526.63 Aligned_cols=321 Identities=33% Similarity=0.442 Sum_probs=269.8
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
+++|++.+... ....+.|++..++.++.. .+.+++. +.+.++++++++....+++++++++|+||||+++++|+|
T Consensus 2 ~~kil~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d 79 (333)
T PRK13243 2 KPKVFITREIP-ENGIEMLEEHFEVEVWEDEREIPREVLL-EKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYD 79 (333)
T ss_pred CceEEEECCCC-HHHHHHHhcCceEEEecCCCCCCHHHHH-HHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccc
Confidence 35677665432 122234544344444321 2345554 445678877766555799999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
+||+++|+++||.|+|++|+++.+||||++++||+++|++..+++.+++|.|......+........+|+||||||||+|
T Consensus 80 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G 159 (333)
T PRK13243 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFG 159 (333)
T ss_pred ccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcC
Confidence 99999999999999999999999999999999999999999999999999986321000000112357999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEE
Q psy7383 185 RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 185 ~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilIN 264 (501)
+||+.+|++|++|||+|++||++.........++.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||
T Consensus 160 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 160 RIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVN 238 (333)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 999999999999999999999986544334455554 4899999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 265 vaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||++||+++|+++|++|+|+||+||||++||++ ++|||++|||++|||+||+|.++..++.+++++||.+|++|+.
T Consensus 239 ~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~--~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~ 316 (333)
T PRK13243 239 TARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY--NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEV 316 (333)
T ss_pred CcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC--CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999986 7999999999999999999999999999999999999999985
Q ss_pred CCCCcccccccc
Q psy7383 345 PDCLRNCVNKEY 356 (501)
Q Consensus 345 p~~l~N~Vn~e~ 356 (501)
+ .|+||++.
T Consensus 317 ~---~~~v~~~~ 325 (333)
T PRK13243 317 P---PTLVNREV 325 (333)
T ss_pred C---CcccCHHH
Confidence 4 57888765
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-64 Score=515.83 Aligned_cols=281 Identities=33% Similarity=0.460 Sum_probs=245.7
Q ss_pred EcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHH
Q psy7383 54 FCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTT 133 (501)
Q Consensus 54 ~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~a 133 (501)
+++..+.+++.+. +.++|+++.+ ...+++++++++|+||||++.++|+|+||+++|.++||.|+|++|+++.+||||+
T Consensus 29 ~~~~~~~~~~~~~-~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~ 106 (314)
T PRK06932 29 EYDHTSAEQTIER-AKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHV 106 (314)
T ss_pred EecCCChHHHHHH-hCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHH
Confidence 3333445666544 4667765544 4579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh
Q psy7383 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE 213 (501)
Q Consensus 134 lal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~ 213 (501)
+++||+++|++..+++.++++.|..... ........++|+||||||||+|.||+.+|++|++|||+|++||+......
T Consensus 107 i~l~l~~~R~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~- 184 (314)
T PRK06932 107 LGMIFALKHSLMGWYRDQLSDRWATCKQ-FCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVC- 184 (314)
T ss_pred HHHHHHHHhChHHHHHHHHcCCCCcCcc-ccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccccc-
Confidence 9999999999999999999999853211 00001123579999999999999999999999999999999997642111
Q ss_pred hhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 214 KSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 214 ~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
... ..+|+|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||
T Consensus 185 ---~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 185 ---REG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred ---ccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 111 3489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC----CCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 294 ESEPYNVFQGNLK----DAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 294 e~EPl~~~~~pL~----~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
++||++. ++||| ++|||++|||+||+|.++.+++.+++++||++|++|+
T Consensus 261 ~~EP~~~-~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 261 VKEPPEK-DNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred CCCCCCC-CChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987 89999 4899999999999999999999999999999999886
No 8
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.6e-63 Score=521.89 Aligned_cols=319 Identities=28% Similarity=0.355 Sum_probs=265.8
Q ss_pred CCCCEEEEecCCCCCccccccccc-ceEEEcCC----CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEE
Q psy7383 26 QTRPLVALLDGRDCSIEMPILKDV-ATVAFCDA----QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVR 98 (501)
Q Consensus 26 ~~kp~IvvLd~~~~~~e~~~L~~~-~~v~~~~~----~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~ 98 (501)
..|++|++..........+.|++. .++.++.. .+.+++.+.+.+++|+++++....+++++++++++ ||+|++
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~ 92 (386)
T PLN02306 13 NGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSN 92 (386)
T ss_pred CCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEE
Confidence 446778887654311124556543 35554332 34566665544567777666556799999999996 699999
Q ss_pred cCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeE
Q psy7383 99 IGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTL 178 (501)
Q Consensus 99 ~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktV 178 (501)
.++|+|+||+++|+++||.|+|++|+++.+||||++++||+++|++..+++.+++|.|.... .......+|.||||
T Consensus 93 ~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~----~~~~~g~~L~gktv 168 (386)
T PLN02306 93 MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWL----PHLFVGNLLKGQTV 168 (386)
T ss_pred CCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccc----ccccCCcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999884210 00111257999999
Q ss_pred EeeccchHHHHHHHHHH-hCCCEEEEECCCCCchhh---hhcC------------ceecCCHHHHHhcCCEEEEeccCch
Q psy7383 179 GIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPDGIE---KSLG------------LTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 179 GIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~~~~---~~~g------------v~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
||||+|+||+.+|++|+ +|||+|++||++...... ...+ ++...+|+|++++||+|++|||+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999988643211 1111 1223589999999999999999999
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcH
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSE 322 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ 322 (501)
+|++|||++.|++||+|++|||++||++||++||+++|++|+|.||+||||++||++ +++||++|||++|||+|++|.
T Consensus 249 ~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~--~~~L~~~pNVilTPHiag~T~ 326 (386)
T PLN02306 249 TTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM--KPGLADMKNAVVVPHIASASK 326 (386)
T ss_pred hhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC--cchHhhCCCEEECCccccCcH
Confidence 999999999999999999999999999999999999999999999999999999985 579999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 323 ASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 323 ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
++.+++.+++++||.+|++|+.+. |.||
T Consensus 327 e~~~~~~~~~~~ni~~~~~g~~~~---~~~~ 354 (386)
T PLN02306 327 WTREGMATLAALNVLGKLKGYPVW---GDPN 354 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCc---cccc
Confidence 999999999999999999998654 5666
No 9
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-63 Score=521.87 Aligned_cols=314 Identities=28% Similarity=0.374 Sum_probs=270.4
Q ss_pred ccccc-ceEEEcC-CC-ChHHHHHHhhccceEEEEec--cCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEe
Q psy7383 45 ILKDV-ATVAFCD-AQ-STSEIHEKVLNEAVGALMWH--TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVC 119 (501)
Q Consensus 45 ~L~~~-~~v~~~~-~~-~~~ei~~~~l~~a~~vli~~--~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vt 119 (501)
.|++. .++.+.. .. +.+++. +.+.++++++++. ...+++++|+++|+||||+++++|+|+||+++|+++||.|+
T Consensus 63 ~l~~~g~e~~~~~~~~~~~~~~~-~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~ 141 (385)
T PRK07574 63 FLEERGHELVVTSDKDGPDSDFE-KELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVA 141 (385)
T ss_pred HHHhcCcEEEEeCCCCCCHHHHH-HHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEE
Confidence 45544 3555432 22 234444 4456777766542 24699999999999999999999999999999999999999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCC
Q psy7383 120 NVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199 (501)
Q Consensus 120 n~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~ 199 (501)
|++++++.+||||++++||+++|++..+++.++++.|..... ....++|+||||||||+|+||+.+|++|++|||
T Consensus 142 n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-----~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~ 216 (385)
T PRK07574 142 EVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-----VSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV 216 (385)
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-----cccceecCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999864210 012357999999999999999999999999999
Q ss_pred EEEEECCCC-CchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 200 NVIFYDPYL-PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 200 ~Vi~~dr~~-~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
+|++|||+. ........++....+++|++++||+|++|||+|++|++|||++.|++||+|++|||++||++||++||++
T Consensus 217 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~ 296 (385)
T PRK07574 217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVR 296 (385)
T ss_pred EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHH
Confidence 999999986 3333445566656689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccccc
Q psy7383 279 ALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFP 358 (501)
Q Consensus 279 aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~ 358 (501)
+|++|+|+||+||||++||++. +||||++|||++|||+|++|.++++++.+.+++||++|++|+.+.+.-.+|+.-.+.
T Consensus 297 AL~sG~i~GAaLDV~~~EPlp~-d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~ 375 (385)
T PRK07574 297 ALESGHLAGYAGDVWFPQPAPA-DHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLA 375 (385)
T ss_pred HHHhCCccEEEEecCCCCCCCC-CChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCccc
Confidence 9999999999999999999987 899999999999999999999999999999999999999999776655667766666
Q ss_pred CCCCCCC
Q psy7383 359 SAGGGGL 365 (501)
Q Consensus 359 ~~~~~~~ 365 (501)
..|+-+|
T Consensus 376 ~~~~~~~ 382 (385)
T PRK07574 376 GTGAHSY 382 (385)
T ss_pred Ccccccc
Confidence 6555443
No 10
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-63 Score=516.73 Aligned_cols=287 Identities=28% Similarity=0.340 Sum_probs=255.7
Q ss_pred HHHHHHhhccceEEEEec--cCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHH
Q psy7383 61 SEIHEKVLNEAVGALMWH--TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138 (501)
Q Consensus 61 ~ei~~~~l~~a~~vli~~--~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L 138 (501)
+++. +.+.+++++++.. ...++++.|+++|+||||++.++|+||||+++|+++||.|+|++|+|+.+||||++++||
T Consensus 89 ~~~~-~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL 167 (386)
T PLN03139 89 CELE-KHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRIL 167 (386)
T ss_pred HHHH-HHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHH
Confidence 3444 4557787766543 246999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcC
Q psy7383 139 NLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLG 217 (501)
Q Consensus 139 ~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~g 217 (501)
++.|++..+++.+++|.|..... ....++|.||||||||+|+||+.+|++|++|||+|++||++.. .+.....+
T Consensus 168 ~l~R~~~~~~~~~~~g~W~~~~~-----~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g 242 (386)
T PLN03139 168 ILLRNFLPGYHQVVSGEWNVAGI-----AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETG 242 (386)
T ss_pred HHHcCcHHHHHHHHhCCCccccc-----cCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcC
Confidence 99999999999999999863210 1123579999999999999999999999999999999998753 23344566
Q ss_pred ceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCC
Q psy7383 218 LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297 (501)
Q Consensus 218 v~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EP 297 (501)
+..+.+++|++++||+|++|||+|++|++|||++.|++||+|++|||++||++||++||+++|++|+|+||+||||++||
T Consensus 243 ~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 243 AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 76667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 298 YNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 298 l~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
++. +||||.+|||++|||+||.|.++..++.+.+++||.+|++|+.. ..+|+|...
T Consensus 323 lp~-d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~-~~~~~i~~~ 378 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF-PAQNYIVKE 378 (386)
T ss_pred CCC-CChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC-CCcceeecC
Confidence 987 89999999999999999999999999999999999999999854 346666544
No 11
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-63 Score=524.32 Aligned_cols=311 Identities=29% Similarity=0.363 Sum_probs=264.2
Q ss_pred CEEEEecCCCCCccccccccc-c-eEEEcCC-CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccc
Q psy7383 29 PLVALLDGRDCSIEMPILKDV-A-TVAFCDA-QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDN 105 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~-~-~v~~~~~-~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ 105 (501)
.+|++++... ......|++. . ++.+... .+.+++.+ .+.+++++++.....+++++++++|+||||++.|+|+|+
T Consensus 11 ~~ili~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 88 (409)
T PRK11790 11 IKFLLLEGVH-QSAVEVLRAAGYTNIEYHKGALDEEELIE-AIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQ 88 (409)
T ss_pred eEEEEECCCC-HHHHHHHHhcCCceEEECCCCCCHHHHHH-HcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceeccc
Confidence 3577765432 2223445443 2 5554432 34455544 446777765555567999999999999999999999999
Q ss_pred cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccch
Q psy7383 106 IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185 (501)
Q Consensus 106 ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~ 185 (501)
||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ....+|+||||||||+|+
T Consensus 89 id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-------~~~~~L~gktvGIiG~G~ 161 (409)
T PRK11790 89 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-------AGSFEVRGKTLGIVGYGH 161 (409)
T ss_pred ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-------cCcccCCCCEEEEECCCH
Confidence 9999999999999999999999999999999999999999999999999986321 123579999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
||+.+|+++++|||+|++||++.... ..++..+.+++|++++||+|++|||+|++|++|||++.|++||+|++|||+
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc---cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 99999999999999999999864321 123455568999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC---CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF---QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~---~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G 342 (501)
|||++||++||+++|++|+|+||+||||++||++.. ++|||.+|||++|||+||+|.++.+++.+++++|+.+|++|
T Consensus 239 aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 239 SRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998752 37999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q psy7383 343 RIPDCLRNCVNK 354 (501)
Q Consensus 343 ~~p~~l~N~Vn~ 354 (501)
+.+ .|.||.
T Consensus 319 ~~~---~~~vn~ 327 (409)
T PRK11790 319 GST---LSAVNF 327 (409)
T ss_pred CCc---Ccceec
Confidence 854 466664
No 12
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=7.4e-63 Score=510.98 Aligned_cols=307 Identities=24% Similarity=0.339 Sum_probs=258.4
Q ss_pred CCCEEEEecCCCCCc---ccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccc
Q psy7383 27 TRPLVALLDGRDCSI---EMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGV 103 (501)
Q Consensus 27 ~kp~IvvLd~~~~~~---e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~ 103 (501)
+|++|++........ ..+.++... +..+...+.+++. +.+.++|+++++ ...+++++++++|+||||++.++|+
T Consensus 17 ~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~-~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~ 93 (347)
T PLN02928 17 RPTRVLFCGPEFPASYSYTREYLQKYP-FIQVDAVAREDVP-DVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVGL 93 (347)
T ss_pred CCCEEEEECCCchhHHHHHHHHhhcCC-eeEecCCCHHHHH-HHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCccc
Confidence 456677765432211 123333333 3333334455654 445677765554 4579999999999999999999999
Q ss_pred cccchhhhhhcCeEEeecCCC---CchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEe
Q psy7383 104 DNIDVKAAGELGIAVCNVPGY---GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180 (501)
Q Consensus 104 D~ID~~aa~~~GI~Vtn~pg~---~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGI 180 (501)
|+||++++.++||.|+|++++ ++.+||||++++||+++|++..+++.++++.|... ...+|+||||||
T Consensus 94 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~gktvGI 164 (347)
T PLN02928 94 EGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP---------IGDTLFGKTVFI 164 (347)
T ss_pred CcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc---------cccCCCCCEEEE
Confidence 999999999999999999986 78999999999999999999999999999987421 124799999999
Q ss_pred eccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-------------cCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-------------LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 181 VGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-------------~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
||+|.||+.+|++|++|||+|++|||+........ ... ...+|+|++++||+|++|||+|++|++|
T Consensus 165 iG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~l 243 (347)
T PLN02928 165 LGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGI 243 (347)
T ss_pred ECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcc
Confidence 99999999999999999999999999743221110 012 2458999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHH
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTE 327 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~ 327 (501)
|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. ++|||++|||++|||+|++|.+++++
T Consensus 244 i~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~-~~pL~~~~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 244 VNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDP-DDPILKHPNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCC-CChhhcCCCEEECCcCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q psy7383 328 LREMAASEIRRAIVGRIPDC 347 (501)
Q Consensus 328 ~~~~~~~ni~~~l~G~~p~~ 347 (501)
+.+++++||++|++|+.+.+
T Consensus 323 ~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 323 MGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999986544
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=2.8e-62 Score=531.05 Aligned_cols=301 Identities=34% Similarity=0.504 Sum_probs=265.2
Q ss_pred cccccc-ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecC
Q psy7383 44 PILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVP 122 (501)
Q Consensus 44 ~~L~~~-~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~p 122 (501)
+.|++. .++.+....+.+++.+ .+.++|+++++...++++++++++|+||||+++++|+|+||+++|+++||.|+|+|
T Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p 92 (525)
T TIGR01327 14 DILEDVGVEVDVQTGLSREELLE-IIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP 92 (525)
T ss_pred HHHHhcCcEEEeCCCCCHHHHHH-HhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCC
Confidence 344433 3555543345566654 44678887777666899999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEE
Q psy7383 123 GYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI 202 (501)
Q Consensus 123 g~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi 202 (501)
|+++.+||||++++||+++|++..+++.+++|+|.... ....+|+||||||||+|+||+.+|++|++|||+|+
T Consensus 93 g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-------~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~ 165 (525)
T TIGR01327 93 TGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA-------FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165 (525)
T ss_pred CcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc-------cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999986321 11257999999999999999999999999999999
Q ss_pred EECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 203 FYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 203 ~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+||++.........++..+.+++|++++||+|++|||+|++|++||+++.|++||+|++|||++||++||++||+++|++
T Consensus 166 ~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 166 AYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred EECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 99997544444556776666899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccc
Q psy7383 283 GRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357 (501)
Q Consensus 283 g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~ 357 (501)
|+|+||+||||++||++ ++|||++|||++|||+|++|.++..++.+++++|+.+|++|+.+ .|+||...+
T Consensus 246 g~i~gAaLDVf~~EP~~--~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~---~~~vn~~~~ 315 (525)
T TIGR01327 246 GHVRAAALDVFEKEPPT--DNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPV---PNAVNAPGI 315 (525)
T ss_pred CCeeEEEEecCCCCCCC--CChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCC---CceeeCCCC
Confidence 99999999999999964 79999999999999999999999999999999999999999854 577776644
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-61 Score=524.79 Aligned_cols=313 Identities=36% Similarity=0.506 Sum_probs=269.9
Q ss_pred EEEEecCCCCCccccccccc--ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccc
Q psy7383 30 LVALLDGRDCSIEMPILKDV--ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~--~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID 107 (501)
+|++.+... +..++.|++. .++.+....+.+++.+. +.++|+++++....+++++++++|+||||++.++|+|+||
T Consensus 2 ~ili~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 2 KVLVSDPIS-PAGLEILKDAPGVEVDVKTGLDKEELLEI-IGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVD 79 (526)
T ss_pred eEEEeCCCC-HHHHHHHhccCCeEEEeCCCCCHHHHHHH-hcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCccccccc
Confidence 366665432 2223445443 34444333455666544 4678877776666899999999999999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHH
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIG 187 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG 187 (501)
+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.... ....+|.||||||||+|+||
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~-------~~g~~l~gktvgIiG~G~IG 152 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK-------FMGVELYGKTLGIIGLGRIG 152 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC-------ccccccCCCEEEEECCCHHH
Confidence 99999999999999999999999999999999999999999999999985321 11257999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 188 SAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+|++|++|||+|++||++.........+++.+ +++|++++||+|++|||+|++|+++|+++.|++||+|++|||++|
T Consensus 153 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 153 SEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999765444455677766 899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy7383 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDC 347 (501)
Q Consensus 268 G~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~ 347 (501)
|++||++||+++|++|+|+||+||||++||++ ++|||++|||++|||+|++|.++.+++.+++++|+.+|++|+.+
T Consensus 232 G~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~--~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-- 307 (526)
T PRK13581 232 GGIIDEAALAEALKSGKVAGAALDVFEKEPPT--DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPV-- 307 (526)
T ss_pred CceeCHHHHHHHHhcCCeeEEEEecCCCCCCC--CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCc--
Confidence 99999999999999999999999999999975 79999999999999999999999999999999999999999854
Q ss_pred Cccccccccc
Q psy7383 348 LRNCVNKEYF 357 (501)
Q Consensus 348 l~N~Vn~e~~ 357 (501)
.|+||...+
T Consensus 308 -~~~vn~~~~ 316 (526)
T PRK13581 308 -PNAVNLPSI 316 (526)
T ss_pred -CceeeCCCC
Confidence 567775543
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-60 Score=491.27 Aligned_cols=306 Identities=26% Similarity=0.357 Sum_probs=260.4
Q ss_pred EEEEecCCCCCcccccc----cccc-eEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCC--CCcEEEEcCcc
Q psy7383 30 LVALLDGRDCSIEMPIL----KDVA-TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFK--TLRIIVRIGSG 102 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L----~~~~-~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p--~LK~I~~~gaG 102 (501)
||++++.++ +|.+.+ ++.. ++.+.+...++|+. +.+.++++++++....++++++++++ +||+|++.++|
T Consensus 3 ~i~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 79 (330)
T PRK12480 3 KIMFFGTRD--YEKEMALNWGKKNNVEVTTSKELLSSATV-DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79 (330)
T ss_pred EEEEEeCcH--HHHHHHHHHHHhcCeEEEEcCCCCCHHHH-HHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence 588887654 344444 3332 34443333345554 44577888777766689999999997 89999999999
Q ss_pred ccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeec
Q psy7383 103 VDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVG 182 (501)
Q Consensus 103 ~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVG 182 (501)
+|+||+++|+++||.|+|++++++++||||++++||+++|++.++++.++++.|.+... ...++|+|++|||||
T Consensus 80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~------~~~~~l~g~~VgIIG 153 (330)
T PRK12480 80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE------IMSKPVKNMTVAIIG 153 (330)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc------cCccccCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997632110 113579999999999
Q ss_pred cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 183 LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 183 lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
+|.||+.+|++|++|||+|++||++...... ......++++++++||+|++|+|++++|+++|+++.|++||+|++|
T Consensus 154 ~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavl 230 (330)
T PRK12480 154 TGRIGAATAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAIL 230 (330)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEE
Confidence 9999999999999999999999987543211 1233458999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC---------C---CCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 263 VNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN---------V---FQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 263 INvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~---------~---~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
||++||.+||+++|+++|++|+|+||+||||++||+. . ..+|||++|||++|||+|++|.++.+++.+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~ 310 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVE 310 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999962 1 124799999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q psy7383 331 MAASEIRRAIVGRIPDC 347 (501)
Q Consensus 331 ~~~~ni~~~l~G~~p~~ 347 (501)
.+++|+.+|++|+.+.+
T Consensus 311 ~~~~n~~~~~~~~~~~~ 327 (330)
T PRK12480 311 GGLNAALSVINTGTCET 327 (330)
T ss_pred HHHHHHHHHHhCCCCcc
Confidence 99999999999997653
No 16
>KOG0068|consensus
Probab=100.00 E-value=5.2e-61 Score=482.62 Aligned_cols=313 Identities=35% Similarity=0.511 Sum_probs=281.0
Q ss_pred EEEEecCCCCCcccccccccc-eEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHh-cCCCCcEEEEcCccccccc
Q psy7383 30 LVALLDGRDCSIEMPILKDVA-TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLE-KFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~-~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~-~~p~LK~I~~~gaG~D~ID 107 (501)
+|++.+..+ ....+.|++.+ ++++....+.+|+..++ ++++++++...+++++++|+ ...+||+|.+.++|+||||
T Consensus 8 ~il~~e~~~-~~~~~~l~~~g~~v~~~~~~~~eel~~~i-~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLD-QACIEILKDNGYQVEFKKNLSLEELIEKI-KDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccc-hHHHHHHHhcCceEEEeccCCHHHHHHHh-ccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 677777654 24556777765 67776666777887665 67888888888999999999 5678999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHH
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIG 187 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG 187 (501)
+++|+++||.|.|+|.+|+.++||+++++++++.|++.+....+++|+|.... +.+.+|+|||+||+|||+||
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~-------~~G~el~GKTLgvlG~GrIG 158 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVK-------YLGWELRGKTLGVLGLGRIG 158 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecc-------eeeeEEeccEEEEeecccch
Confidence 99999999999999999999999999999999999999999999999997532 22468999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 188 SAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+|++++++||+|++||+.......+.+|++.+ +++|++..||||++|||+||+|++|+|++.|++||+|..+||++|
T Consensus 159 seVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aR 237 (406)
T KOG0068|consen 159 SEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVAR 237 (406)
T ss_pred HHHHHHHHhcCceEEeecCCCchHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecC
Confidence 9999999999999999999988878888999865 899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHcCCceEEEEecCCCCCCCC-CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNV-FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 268 G~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~-~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
|.+||++||+++|++|+++||++|||++||... .++.|.++|||++|||+|+.|.|+..++...+++++.+|++|.
T Consensus 238 GGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~--- 314 (406)
T KOG0068|consen 238 GGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGN--- 314 (406)
T ss_pred CceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccC---
Confidence 999999999999999999999999999999752 1578999999999999999999999999999999999999983
Q ss_pred CCcccccccc
Q psy7383 347 CLRNCVNKEY 356 (501)
Q Consensus 347 ~l~N~Vn~e~ 356 (501)
....||...
T Consensus 315 -~~g~Vna~~ 323 (406)
T KOG0068|consen 315 -SAGSVNAPE 323 (406)
T ss_pred -ccceechhh
Confidence 345666553
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-58 Score=475.91 Aligned_cols=278 Identities=28% Similarity=0.388 Sum_probs=245.8
Q ss_pred ChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHH
Q psy7383 59 STSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136 (501)
Q Consensus 59 ~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal 136 (501)
.++|+. +.+.++++++++....+++++|+++|+ ||||++.|+|+|+||+++|+++||.|+|++|+++.+||||++++
T Consensus 35 ~~~e~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~ 113 (332)
T PRK08605 35 LTDDNV-EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQ 113 (332)
T ss_pred CCHHHH-HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHH
Confidence 344554 344677887777667899999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHH-HhCCCEEEEECCCCCchhhhh
Q psy7383 137 ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA-KAFGFNVIFYDPYLPDGIEKS 215 (501)
Q Consensus 137 ~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L-~afG~~Vi~~dr~~~~~~~~~ 215 (501)
||+++|++..+++.++++.|.+... ...++|+|++|||||+|.||+.+|++| ++|||+|++||++......
T Consensus 114 ~l~~~R~~~~~~~~~~~~~~~~~~~------~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~-- 185 (332)
T PRK08605 114 AINLVRHFNQIQTKVREHDFRWEPP------ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA-- 185 (332)
T ss_pred HHHHhcChHHHHHHHHhCCcccccc------cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--
Confidence 9999999999999999998732111 112579999999999999999999999 7899999999987643321
Q ss_pred cCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 216 LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 216 ~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
..+....++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||.++|+++|+++|++|+|+||+||||+.
T Consensus 186 ~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 265 (332)
T PRK08605 186 TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEF 265 (332)
T ss_pred hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccC
Confidence 22444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCCC-----------CCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 296 EP--YNVFQG-----------NLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 296 EP--l~~~~~-----------pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
|| ++. ++ +||.+|||++|||+|++|.++.+++.+.+++|+.+|++|+...
T Consensus 266 Ep~~~~~-~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~ 328 (332)
T PRK08605 266 ERPLFPS-DQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTR 328 (332)
T ss_pred CCCcccc-ccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 98 343 44 4999999999999999999999999999999999999998543
No 18
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=4.3e-57 Score=461.88 Aligned_cols=267 Identities=25% Similarity=0.320 Sum_probs=231.8
Q ss_pred ccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhh-----hhhcCeEEeecCC-CCchhhHHHHHHHHHHHHh
Q psy7383 69 NEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKA-----AGELGIAVCNVPG-YGVEEVADTTLCLILNLYR 142 (501)
Q Consensus 69 ~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~a-----a~~~GI~Vtn~pg-~~a~aVAE~alal~L~l~R 142 (501)
.+++++++|.. +.+.++ .++||||++.++|+|++|.+. +.++||.|+|+++ .++.+||||++++||+++|
T Consensus 37 ~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r 112 (312)
T PRK15469 37 DPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR 112 (312)
T ss_pred ccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence 45677777763 467775 589999999999999998322 3458999999864 6889999999999999999
Q ss_pred hHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecC
Q psy7383 143 RTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVY 222 (501)
Q Consensus 143 ~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~ 222 (501)
++..+.+.++++.|.... ..+++||||||||+|.||+.+|++|++|||+|++||++........ .+....
T Consensus 113 ~~~~~~~~~~~~~w~~~~---------~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~-~~~~~~ 182 (312)
T PRK15469 113 RFDDYQALQNSSHWQPLP---------EYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ-SFAGRE 182 (312)
T ss_pred ChHHHHHHHHhCCcCCCC---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce-eecccc
Confidence 999999999999885311 2468999999999999999999999999999999998654311100 011234
Q ss_pred CHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCC
Q psy7383 223 TLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQ 302 (501)
Q Consensus 223 sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~ 302 (501)
++++++++||+|++|+|+|++|+++|+++.|++||+|++|||++||++||++||+++|++|+|.||+||||++||++. +
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~-~ 261 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPP-E 261 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCC-C
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred CCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 303 GNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 303 ~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
+|||++|||++|||+|++|.++ ++.+++.+|+++|++|+. +.|+||++
T Consensus 262 ~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~---~~~~V~~~ 309 (312)
T PRK15469 262 SPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGER---VCGQVDRA 309 (312)
T ss_pred ChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCC---CcccCCcc
Confidence 9999999999999999999874 688999999999999984 57889876
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-55 Score=449.95 Aligned_cols=247 Identities=26% Similarity=0.356 Sum_probs=222.7
Q ss_pred hcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 88 EKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 88 ~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
..+++||||++.++|+|+||+++|++++|.++|. |.++.+||||++++||+++|++..+++.+++|.|...
T Consensus 45 ~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~-------- 115 (303)
T PRK06436 45 VPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS-------- 115 (303)
T ss_pred CCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--------
Confidence 3467999999999999999999999998888775 8889999999999999999999999999999998632
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-ecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-RVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
..++|+||||||||+|+||+.+|++|++|||+|++|||+.... ++. ...++++++++||+|++|||+|++|++
T Consensus 116 -~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 116 -PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred -CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-----CcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 1257999999999999999999999999999999999875321 222 135899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCC-CCcHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA-FYSEASC 325 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiA-g~T~ea~ 325 (501)
+|+++.|++||+|++|||+|||++||+++|+++|++|+|.||+||||++||++. ++ .+|||++|||++ ++|.++.
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~-~~---~~~nviiTPHi~g~~t~e~~ 265 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIIT-ET---NPDNVILSPHVAGGMSGEIM 265 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCc-cC---CCCCEEECCccccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999875 44 689999999976 5899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccc
Q psy7383 326 TELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357 (501)
Q Consensus 326 ~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~ 357 (501)
+++.+++++||++|++|+. .|+||++.|
T Consensus 266 ~~~~~~~~~ni~~~~~g~~----~~~V~~~~y 293 (303)
T PRK06436 266 QPAVALAFENIKNFFEGKP----KNIVRKEEY 293 (303)
T ss_pred HHHHHHHHHHHHHHHcCCC----CceEchHHh
Confidence 9999999999999999872 488888754
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.9e-55 Score=458.51 Aligned_cols=280 Identities=25% Similarity=0.349 Sum_probs=239.1
Q ss_pred EEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
||++-+... +..+.+++..++.+.... ++..+.+.++|+++++..+++++++++ .++||||+++++|+||||++
T Consensus 2 kI~~d~~~p--~~~~~~~~~~~v~~~~~~---~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 2 KIVADENIP--LLDAFFAGFGEIRRLPGR---AFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred EEEEecCch--hHHHHHhhCCcEEEcCCc---ccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCHH
Confidence 355544432 334566666677665422 222234467887777776789999997 58999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+++++||.|+|++|+|+.+||||++++||++.|+. ..+|+||||||||+|+||+.
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-------------------------g~~l~gktvGIIG~G~IG~~ 130 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-------------------------GVDLAERTYGVVGAGHVGGR 130 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-------------------------CCCcCcCEEEEECCCHHHHH
Confidence 99999999999999999999999999999998751 13599999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCch----hhhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE----HNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~----~T~~lI~~~~l~~MK~gAilINv 265 (501)
+|++|++|||+|++||+..... . +.....++++++++||+|++|+|+|+ +|++|||++.|++||+|++|||+
T Consensus 131 va~~l~a~G~~V~~~Dp~~~~~---~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 131 LVRVLRGLGWKVLVCDPPRQEA---E-GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred HHHHHHHCCCEEEEECCccccc---c-cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 9999999999999999854321 1 11224589999999999999999999 59999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
+||++||++||+++|++|+|.+|+||||++||.+ +++||.. ||++|||+||+|.++..++.+++.+|+.+|+.+...
T Consensus 207 aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~--~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~ 283 (381)
T PRK00257 207 SRGAVVDNQALREALLSGEDLDAVLDVWEGEPQI--DLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR 283 (381)
T ss_pred CCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCC--ChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999964 6899986 999999999999999999999999999999988754
Q ss_pred CC
Q psy7383 346 DC 347 (501)
Q Consensus 346 ~~ 347 (501)
..
T Consensus 284 ~~ 285 (381)
T PRK00257 284 VS 285 (381)
T ss_pred cc
Confidence 43
No 21
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.4e-55 Score=457.17 Aligned_cols=273 Identities=24% Similarity=0.367 Sum_probs=234.3
Q ss_pred EEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
||++.+.. +...+.|++.+++.+..... +..+.+.++|+++++..+.+++++++ .++||||+++++|+||||++
T Consensus 2 kIl~d~~~--~~~~~~~~~~~ev~~~~~~~---~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~ 75 (378)
T PRK15438 2 KILVDENM--PYARELFSRLGEVKAVPGRP---IPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEA 75 (378)
T ss_pred EEEEeCCc--chHHHHHhhcCcEEEeCCCC---CCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHH
Confidence 36665543 34556777767777654322 11122467787777766789999985 69999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+++++||.|+|++|+|+.+||||++++||++.|+. + .+|+||||||||+|+||+.
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------g----------------~~L~gktvGIIG~G~IG~~ 130 (378)
T PRK15438 76 WLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------G----------------FSLHDRTVGIVGVGNVGRR 130 (378)
T ss_pred HHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------C----------------CCcCCCEEEEECcCHHHHH
Confidence 99999999999999999999999999999998861 1 2589999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchh----hhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH----NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~----T~~lI~~~~l~~MK~gAilINv 265 (501)
+|++|++|||+|++||+..... .... ...+|++++++||||++|+|+|++ |++|||++.|++||+|++|||+
T Consensus 131 vA~~l~a~G~~V~~~dp~~~~~---~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 131 LQARLEALGIKTLLCDPPRADR---GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred HHHHHHHCCCEEEEECCccccc---cccc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 9999999999999999864321 1112 235899999999999999999996 9999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
|||++||++||+++|++|++.||+||||++||.+ +++||...| |+|||+||+|.++..++..++++|+.+|+
T Consensus 207 aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~--~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 207 CRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPEL--NVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred CCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCC--chhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974 578987665 99999999999999999999999999998
No 22
>KOG0069|consensus
Probab=100.00 E-value=5.6e-55 Score=445.98 Aligned_cols=266 Identities=33% Similarity=0.473 Sum_probs=237.0
Q ss_pred ceEEEEec-cCCCCHHHHhcC-CCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHH
Q psy7383 71 AVGALMWH-TIILTKEDLEKF-KTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLA 148 (501)
Q Consensus 71 a~~vli~~-~~~l~~e~l~~~-p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~ 148 (501)
...++.+. ...++.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+++.+.++|||++++++|.++|++...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~ 140 (336)
T KOG0069|consen 61 SRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGN 140 (336)
T ss_pred eeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 33344443 235677777776 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHH
Q psy7383 149 NMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDL 227 (501)
Q Consensus 149 ~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdel 227 (501)
+++++|.|.+.... .....+.||||||+|+|+||+.+|++|++||+.+.+++|+... +.....+.+ ..+++++
T Consensus 141 ~~~~~g~w~~~~~~-----~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~ 214 (336)
T KOG0069|consen 141 EMVRNGGWGWAGGW-----PLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEEL 214 (336)
T ss_pred hhhhcCCccccCCc-----cccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHH
Confidence 99999998332211 1235799999999999999999999999999888888887643 333344444 4589999
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCC
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~ 307 (501)
+.+||+|++|||+|++|+|+||++.|++||+|++|||++||.++|+++++++|++|+|.+|+||||+.|| +. +++|+.
T Consensus 215 ~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~-~~~l~~ 292 (336)
T KOG0069|consen 215 LANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PV-DHPLLT 292 (336)
T ss_pred HhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CC-Ccchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 55 799999
Q ss_pred CCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 308 APNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 308 ~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||++|||+|+.|.+++.+|..+++.|+.+++.|+.
T Consensus 293 ~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~ 329 (336)
T KOG0069|consen 293 LDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKP 329 (336)
T ss_pred ccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999984
No 23
>KOG0067|consensus
Probab=100.00 E-value=4.7e-48 Score=392.59 Aligned_cols=355 Identities=73% Similarity=1.119 Sum_probs=333.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCC
Q psy7383 2 DKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTII 81 (501)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~m~~kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~ 81 (501)
|+=.+.++|-.--++++..-+++...+|.+++++..+|.+++++|++++.+.|||..+.+|+.++.++++...++|++..
T Consensus 5 ~~v~~~~~~~~~~~~~~~~lngp~h~~p~~aLld~rdc~vemPilk~~atvafcdaqstqeIhekvLneavgam~yh~i~ 84 (435)
T KOG0067|consen 5 DKVLTSRQREIAVGIRPLGLNGPLHPRPLVALLDGRDCGVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTIT 84 (435)
T ss_pred CCCCcchhhhccccceecccCCCCCCCcchhhcccccccccchhhhcchheeeecccchHHHHHHHHHHhhhcceeeecc
Confidence 33344444444468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCch
Q psy7383 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161 (501)
Q Consensus 82 l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~ 161 (501)
++++.+++++.||+|.+.+.|+|++|+.+|.+.||.|||.++...+.+|+-++.++|.++|+..|..+.+++|.|.+...
T Consensus 85 l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~ 164 (435)
T KOG0067|consen 85 LPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLE 164 (435)
T ss_pred cchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 162 ~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.++...+...++|.++|++|+|+.|++++.++++||+.|+.||++..+...+.+|.+++++++|++.++|.+++||-++
T Consensus 165 q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~ 244 (435)
T KOG0067|consen 165 QVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLN 244 (435)
T ss_pred hhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecccC
Confidence 88888888899999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCc
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYS 321 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T 321 (501)
+.+.++|+...+++|+.|++++|++||.++|+++|.++|+.|+|.+++ |......||.+.||.|+|||.+|++
T Consensus 245 ~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~ 317 (435)
T KOG0067|consen 245 EHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYS 317 (435)
T ss_pred cccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhh
Confidence 999999999999999999999999999999999999999999999887 3222357899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccccCCCCC
Q psy7383 322 EASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAGGG 363 (501)
Q Consensus 322 ~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~~~~~~ 363 (501)
+.+..++.+.++..+++-+.|..|..+.||||+|+++.+--|
T Consensus 318 e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~~~~~~p~ 359 (435)
T KOG0067|consen 318 EAASVELREVAALEIRRAITGRIPDSLRNCVNKEFSPTNAPW 359 (435)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhhccccCCc
Confidence 999999999999999999999999999999999999865555
No 24
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.5e-46 Score=354.59 Aligned_cols=177 Identities=44% Similarity=0.631 Sum_probs=154.5
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-
Q psy7383 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI- 212 (501)
Q Consensus 134 lal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~- 212 (501)
|++||++.|++.++++.++++.|+. ......++|+|+||||||+|+||+.+|++|++|||+|++|||+.....
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~------~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~ 74 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWAS------RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG 74 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHH------HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCC------CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh
Confidence 6899999999999999999999821 112234689999999999999999999999999999999999986544
Q ss_pred hhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 213 EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 213 ~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
....++. ..+++|++++||+|++|||+|++|+++||++.|++||+|++|||++||++||++||+++|++|+|.||+|||
T Consensus 75 ~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178)
T PF02826_consen 75 ADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178)
T ss_dssp HHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred cccccce-eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence 4455664 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEecCCC
Q psy7383 293 HESEPYNVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 293 fe~EPl~~~~~pL~~~pNVilTPHiA 318 (501)
|+.||++. ++|||++|||++|||+|
T Consensus 154 ~~~EP~~~-~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 154 FEPEPLPA-DSPLWDLPNVILTPHIA 178 (178)
T ss_dssp -SSSSSST-THHHHTSTTEEEESS-T
T ss_pred CCCCCCCC-CChHHcCCCEEEeCccC
Confidence 99999986 78999999999999986
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.84 E-value=2.6e-20 Score=199.10 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=138.1
Q ss_pred EEcCcccccc-chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccC
Q psy7383 97 VRIGSGVDNI-DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRG 175 (501)
Q Consensus 97 ~~~gaG~D~I-D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~g 175 (501)
=-+++|+..+ .++..-+.+|+|+|+++.+..+++|+++++++++...+ +|.+. ..|.|
T Consensus 196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~~---------------~~LaG 254 (476)
T PTZ00075 196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRATD---------------VMIAG 254 (476)
T ss_pred ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhcC---------------CCcCC
Confidence 3467777664 23333457899999999999999999999999987433 34331 25899
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
|+|+|+|+|.||+.+|++|++|||+|+++++..... .+...|++. .+++++++++|+|++|+ .|+++|+++.|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~at----Gt~~iI~~e~~~ 329 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTAT----GNKDIITLEHMR 329 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECC----CcccccCHHHHh
Confidence 999999999999999999999999999997664332 223356654 48999999999999984 478999999999
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
+||+|++|||++|+ |++.++++|+++. ++||++.||..
T Consensus 330 ~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 330 RMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred ccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999999999999 7888888888754 68999999964
No 26
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.81 E-value=2.2e-19 Score=161.38 Aligned_cols=100 Identities=40% Similarity=0.589 Sum_probs=81.9
Q ss_pred EEEecCCCCCcccccccc-cceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 31 VALLDGRDCSIEMPILKD-VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 31 IvvLd~~~~~~e~~~L~~-~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
|++++.. .+..++.|++ + ++.+++..+.+++.+. ++++++++++....+++++|+++|+||||++.|+|+|+||++
T Consensus 1 ili~~~~-~~~~~~~l~~~~-~v~~~~~~~~~~~~~~-l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 77 (133)
T PF00389_consen 1 ILITDPL-PDEEIERLEEGF-EVEFCDSPSEEELAER-LKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLE 77 (133)
T ss_dssp EEESSS--SHHHHHHHHHTS-EEEEESSSSHHHHHHH-HTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HH
T ss_pred eEEeccC-CHHHHHHHHCCc-eEEEeCCCCHHHHHHH-hCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHH
Confidence 4566543 3567788888 5 8999987777777655 467888777766569999999999999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTT 133 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~a 133 (501)
+|+++||.|+|++|+++.+||||+
T Consensus 78 ~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 78 AAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999998
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.79 E-value=5.3e-19 Score=179.47 Aligned_cols=167 Identities=21% Similarity=0.242 Sum_probs=133.1
Q ss_pred CCCCHHHHhcCCCCcEEEEcCccccccchh-hhhhcCeEEe------ecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy7383 80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVK-AAGELGIAVC------NVPGYGVEEVADTTLCLILNLYRRTYWLANMVR 152 (501)
Q Consensus 80 ~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~-aa~~~GI~Vt------n~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~ 152 (501)
..+++++|+++| .++...+|+++.|++ +|+++||.|+ |+..+|+.++||+++++++...
T Consensus 80 ~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~----------- 145 (287)
T TIGR02853 80 VVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT----------- 145 (287)
T ss_pred ccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc-----------
Confidence 357889999888 377788899999988 9999999999 9999999999999998777431
Q ss_pred cCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec--CCHHHHHh
Q psy7383 153 EGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV--YTLQDLLF 229 (501)
Q Consensus 153 ~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~--~sLdelL~ 229 (501)
..+++|++|+|+|+|.||+.+|++|+++|++|++++|+... ......+...+ .++++++.
T Consensus 146 -----------------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~ 208 (287)
T TIGR02853 146 -----------------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA 208 (287)
T ss_pred -----------------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc
Confidence 02489999999999999999999999999999999997543 12223344332 35778899
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCce
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIR 286 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~ 286 (501)
++|+|++|+|.+ +++++.++.||+++++||++...- +|. ++.++..+.
T Consensus 209 ~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~~ 257 (287)
T TIGR02853 209 EIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGIK 257 (287)
T ss_pred cCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCCE
Confidence 999999999953 778899999999999999988432 343 344555554
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.60 E-value=1.2e-14 Score=148.24 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=121.8
Q ss_pred CCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCC------CchhhHHHHHHHHHHHHhhHHHHHHHHHcCC
Q psy7383 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGY------GVEEVADTTLCLILNLYRRTYWLANMVREGK 155 (501)
Q Consensus 82 l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~------~a~aVAE~alal~L~l~R~~~~~~~~~~~g~ 155 (501)
++++.++.++++..+. .|.+.++++ +.|.++||+|++.... ++.++||.++.+++..+
T Consensus 83 ~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~-------------- 146 (296)
T PRK08306 83 LTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT-------------- 146 (296)
T ss_pred chHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC--------------
Confidence 4789999999996444 588899988 8899999999987754 77888888776533210
Q ss_pred ccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec--CCHHHHHhcCC
Q psy7383 156 KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV--YTLQDLLFQSD 232 (501)
Q Consensus 156 w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~--~sLdelL~~sD 232 (501)
..++.+++|+|||+|.+|+.+++.|+.+|++|+++|++... ......|++.+ .++.+.+.++|
T Consensus 147 --------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 147 --------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID 212 (296)
T ss_pred --------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence 02478999999999999999999999999999999998543 23344565533 35678899999
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+||.++|. .+++++.++.|++++++||++..
T Consensus 213 iVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 213 IIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred EEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 99999873 57889999999999999999863
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.60 E-value=2.3e-15 Score=161.00 Aligned_cols=120 Identities=23% Similarity=0.205 Sum_probs=104.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+.|++|+|+|+|.||+.+|+++++||++|+++++.... ......|+.. .+++++++++|+|+. +..++++|++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~leEal~~ADVVI~----tTGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTLEDVVSEADIFVT----TTGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccHHHHHhhCCEEEE----CCCCccchHH
Confidence 379999999999999999999999999999999887643 2334456654 379999999999987 3467899999
Q ss_pred HHHhcCCCCcEEEEcCC-CCccCHHHHHHH--HHcCCceEEEEecCCCCC
Q psy7383 251 FTIKQMRPGAFLVNTAR-GGLVDDDSLAAA--LKQGRIRAAALDVHESEP 297 (501)
Q Consensus 251 ~~l~~MK~gAilINvaR-G~vVde~aL~~a--L~~g~I~GAaLDVfe~EP 297 (501)
+.|+.||+|++|||++| +..||+++|.++ ++.+.+. +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 678999999998 9999998 8999998763
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.51 E-value=5.4e-14 Score=148.94 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=102.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+.|++|+|+|+|.||+.+|++++++|++|+++|+.+... .+...|+. +.+++++++.+|+|+.+. .+.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 3789999999999999999999999999999998765432 23345664 347899999999998754 36899999
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
+.|..||+|++|+|++|+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999888888899999874
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.48 E-value=1.1e-13 Score=142.04 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=79.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
..|+||||||||||.||+++|++|+.||++|++|++.... ..+...|++. .+++|++++||+|++|||+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 4699999999999999999999999999999999865322 3344557764 4899999999999999997 67899999
Q ss_pred HHHHhcCCCCcEEEEc
Q psy7383 250 EFTIKQMRPGAFLVNT 265 (501)
Q Consensus 250 ~~~l~~MK~gAilINv 265 (501)
++.+..||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999987643
No 32
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.46 E-value=1.8e-13 Score=127.53 Aligned_cols=115 Identities=23% Similarity=0.315 Sum_probs=93.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc-HHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN-EFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~-~~~l 253 (501)
++|||||+|.||+.||++|...|++|.+||++... ......+++.+.++.|++++||+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 58999999999999999999999999999988643 333445788888999999999999999999888888763 2278
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+.+++|.+|||++....-+...+.+.+.+..+. ++|+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 999999999999999999999999999988866 7885
No 33
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.38 E-value=1.8e-12 Score=131.61 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=104.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~ 251 (501)
.+|+|||+|.||+.||++|...|++|.+|||+..+ +..+..|.....+..|+.+++|+||+|+|.+++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999998754 334456888888899999999999999999999999884 67
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++.||+|++|||++..+......+.+.+++..+. +||.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 99999999999999999999999999999999987 7774
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.33 E-value=5.7e-12 Score=134.35 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=112.8
Q ss_pred EEcCcccccc-chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccC
Q psy7383 97 VRIGSGVDNI-DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRG 175 (501)
Q Consensus 97 ~~~gaG~D~I-D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~g 175 (501)
=-+.+|+..+ .++...+.+++|.|++..+....-|...+.-.+....+ ++.. ...+.|
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai-------~rat--------------~~~l~G 212 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI-------KRAT--------------NVLIAG 212 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHH-------HHhc--------------cCCCCC
Confidence 3456777654 33333457899999998887775553332222221111 0000 023789
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
++|+|+|+|.||+.+|++|+++|++|+++|+..... .....|++ +.+++++++.+|+|+.+. .+.++|+.+.|.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~ 287 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHME 287 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHh
Confidence 999999999999999999999999999999876442 22334655 447899999999998764 467899999999
Q ss_pred cCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 255 QMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 255 ~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
.||+|++++|+++... +|.++|.+
T Consensus 288 ~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 288 AMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred cCCCCCEEEEcCCCCCccChHHHhh
Confidence 9999999999999877 78887765
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.29 E-value=1.2e-11 Score=124.89 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=94.7
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc-c-HHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI-N-EFTI 253 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI-~-~~~l 253 (501)
+|||||+|.||+.+|+.|...|++|++||++... +.....|.....+.++++++||+|++++|.+++++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 5899999999999999999999999999998643 22334566556688899999999999999888887775 3 3467
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
..+++++++||+++....+.++|.+.+++..+. ++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999998889999999987665 555
No 36
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.28 E-value=2.3e-11 Score=123.86 Aligned_cols=112 Identities=25% Similarity=0.393 Sum_probs=96.5
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhc---CCEEEEeccCchhhhhcccHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~---sDvVil~lPlt~~T~~lI~~~~ 252 (501)
+|||||+|.||+.+|++|...|++|++||++... +.....|.....++++++++ +|+|++++|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 6999999999999999999999999999987543 23344577666789999876 699999999887888888 467
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+..+++|.+|||+++....+...+.+.+++..+. ++|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 7889999999999999999999999999988765 688
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.27 E-value=2.1e-11 Score=124.14 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=97.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|+|||+|.||..+|+.|...|++|++||++... ......+.....+..+++++||+|++++|...+++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 37999999999999999999999999999998643 222344666667889999999999999998877777764 346
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+..++++.++||++++.....+.+.+.+.+..+. ++|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7789999999999999999999999999998876 6775
No 38
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.26 E-value=2.3e-11 Score=123.02 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=95.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|||||+|.||+.+|+.|...|++|++||++... ......++....++++++.+||+|++++|.+.+++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 47999999999999999999999999999987643 223345666667899999999999999998888888763 347
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+..++++.+|||+++......+++.+.+++..+. ++|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~--~~d 119 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE--MLD 119 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 7889999999999999988888999999887665 445
No 39
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.26 E-value=1.5e-11 Score=115.13 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=73.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.|.||++.|+|||.+|+.+|+.|+++|++|++++..+-...+. ..|++ +.++++++.++|+|+.+.- .+++|..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccCH
Confidence 4899999999999999999999999999999999876443333 35665 4589999999999887643 4688999
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 99999999999999998655 56665544
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.22 E-value=7.3e-11 Score=120.25 Aligned_cols=114 Identities=26% Similarity=0.320 Sum_probs=97.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhc---CCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~---sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|||||+|.||+.+|++|...|++|.+||++... ....+.|+....+++|+++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 37999999999999999999999999999998643 22344677767789998876 699999999877788877 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+..++++.++||++++...+...+.+.+++..+. ++|+
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999999887 6785
No 41
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.15 E-value=1.7e-10 Score=117.59 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=96.3
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHHHh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFTIK 254 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~l~ 254 (501)
+|||||+|+||+.||++|...|++|.+||+..........|...+.+..+++++||+|++++|..++.+.++. ...+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 6999999999999999999999999999987543333445776677889999999999999998888777763 23677
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 78999999999999888888999999888765 7775
No 42
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.14 E-value=2.1e-10 Score=118.85 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=89.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..|++++|||||+|+||+++|+.|+.+|++|+++++.... ......|+... +.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 4589999999999999999999999999999998776432 33345577644 899999999999999997755 7787
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
+++.+..|++|++| -++.| +....+.. .-+..+||+...|..+
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G--~~i~~~~~------~p~~~~~Vi~vaPn~P 133 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG--FNIHFGQI------VPPADVDVIMVAPKGP 133 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC--CChhhcee------ccCCCCcEEEeCCCCC
Confidence 78888999999988 55566 22222111 1133567887777543
No 43
>PLN02256 arogenate dehydrogenase
Probab=99.12 E-value=1e-09 Score=112.63 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=98.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHH-hcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL-~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-++++|+|||+|.||+.+|+.|+.+|++|++||++.........|+....++++++ .++|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 36689999999999999999999999999999988643444456776666788886 4799999999954 567777543
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHi 317 (501)
....++++++|++++..+-+..+++.+.+..+. . ++=+...=+... ....+...+++++|+.
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~-~--~V~~HPmaG~e~-~~~~~~~~~~~~~~~~ 174 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF-D--ILCTHPMFGPES-GKGGWAGLPFVYDKVR 174 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC-e--EEecCCCCCCCC-CccccCCCeEEEecce
Confidence 356789999999999976666666666664421 1 122222222111 1234566667777764
No 44
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.12 E-value=2.6e-10 Score=123.92 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=96.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-hhh----cCce---ecCCHHHHHhc---CCEEEEeccCchhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKS----LGLT---RVYTLQDLLFQ---SDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~----~gv~---~~~sLdelL~~---sDvVil~lPlt~~T 244 (501)
.+|||||+|.||+.||++|...|++|.+|||+..... ..+ .|.. .+.+++|+++. +|+|++++|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 3699999999999999999999999999999865321 111 1432 45688998876 99999999999999
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+.++ ...+..|++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~--flda 131 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL--YLGM 131 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEeC
Confidence 9988 5788999999999999999999999999999999887 6664
No 45
>PLN02712 arogenate dehydrogenase
Probab=99.06 E-value=4.9e-10 Score=125.93 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=88.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI~ 249 (501)
.++.+++|||||+|.||+.+|+.|+.+|++|++||+..........|+....++++++. ++|+|++|+|. ..+..++.
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~ 443 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLK 443 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHH
Confidence 46788999999999999999999999999999999875433344567766668888876 59999999994 57888887
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+-.+..||++++|||++.++-...+.+.+.+..
T Consensus 444 ~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 444 SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 655557999999999999875555555555544
No 46
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.03 E-value=1.5e-09 Score=110.59 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=92.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHH---hcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLL---FQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL---~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|||||+|.||..+|+.|...|++|.+||++... +...+.+.....+++++. .++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 37999999999999999999999999999998643 222334554445666654 5689999999977 778877 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
....+++|.++||++.+...+...+.+.+++..+. ++|..
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda~ 118 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDCG 118 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEecC
Confidence 77889999999999999888999999999888775 67753
No 47
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.03 E-value=1.1e-09 Score=116.55 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=85.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+.|++|+|+|+|.||+.+|++++++|++|+++|+.... ..++..|+..+ ++++++..+|+|+.+.. +.++|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHHHH
Confidence 478999999999999999999999999999999887543 44556777543 67889999999988643 5678888
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
+.|..||+|++|||+++..+ +|..+|..
T Consensus 274 ~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 88999999999999999876 77777664
No 48
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.02 E-value=1.2e-09 Score=110.58 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=91.7
Q ss_pred eeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHHHhcC
Q psy7383 180 IVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFTIKQM 256 (501)
Q Consensus 180 IVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~l~~M 256 (501)
|||+|.||..+|++|...|++|++||++... ......|+....++.+++++||+|++++|...+++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 6899999999999999999999999988643 233345666667899999999999999998777777763 4677789
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 257 K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+++.++||++....-....+.+.+++..+. ++|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999987777778888888877765 6774
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=99.01 E-value=1.4e-09 Score=130.55 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=101.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc--cH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI--NE 250 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI--~~ 250 (501)
..++|||||+|.||..||++|...|++|.+||++... +...+.|...+.+..|+.++||+|++|+|..++++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 3578999999999999999999999999999998654 23345677778899999999999999999999988887 35
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC--ceEEEEec
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR--IRAAALDV 292 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~--I~GAaLDV 292 (501)
..++.+++|.++||++....-....+.+.+++.. +. ++|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6888899999999999999999999999998877 54 7885
No 50
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.00 E-value=1.7e-09 Score=117.06 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=96.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh---cC--ceecCCHHHHHh---cCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS---LG--LTRVYTLQDLLF---QSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~---~g--v~~~~sLdelL~---~sDvVil~lPlt~~T~ 245 (501)
.+|||||+|.||+.||++|...|++|.+|||+.... ..+. .| +..+.+++|++. ++|+|+++++....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999986531 1111 13 334678999886 5899999999998999
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++ ++.+..|++|.++||++.+..-|...+.+.+++..+. ++|+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 988 5688899999999999999999999999999999987 6774
No 51
>KOG0409|consensus
Probab=98.99 E-value=1.1e-09 Score=110.89 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=101.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN-- 249 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~-- 249 (501)
-..++||+||+|.||..|++.|...|++|++|||+.+. ....+.|.....+..|+.+.||+||.++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 45789999999999999999999999999999998764 334556777778999999999999999999999888873
Q ss_pred HHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 250 EFTIKQMRPGAFL-VNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 250 ~~~l~~MK~gAil-INvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
...|+..+++... |+.+.-.......|.++++..... ++|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 4578888888887 999998888888999999998766 6663
No 52
>PLN02858 fructose-bisphosphate aldolase
Probab=98.97 E-value=2.5e-09 Score=128.41 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=98.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc--cHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI--NEF 251 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI--~~~ 251 (501)
-++|||||+|.||..||++|...|++|++||++... ......|.....+..+++++||+|++|+|...+++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999987643 22334566556789999999999999999988998887 456
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHc--CCceEEEEec
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQ--GRIRAAALDV 292 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~--g~I~GAaLDV 292 (501)
.+..|++|.++||++....-..+.+.+.+++ ..+. ++|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 8889999999999999998888899999988 5554 7775
No 53
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.92 E-value=1.5e-08 Score=108.96 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=97.6
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|+||| +|.||+.+|+.|+..|++|++||++... ......|+....++++.+.++|+|++++|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 9999999999999999999999987543 2334456665567888999999999999964 455555 556
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCC
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHi 317 (501)
...+++++++++++.......+++.+.+..+ .. ++.. -|......+++....+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6789999999999986555555666555432 11 3332 3331113467777889999975
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.91 E-value=5.6e-09 Score=113.06 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=92.6
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhc-----CceecCCHHHHH---hcCCEEEEeccCchhhhhc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSL-----GLTRVYTLQDLL---FQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~-----gv~~~~sLdelL---~~sDvVil~lPlt~~T~~l 247 (501)
.|||||+|.||+.||++|...|++|.+|||+.... ...+. ++....++++++ +++|+|++++|....+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999986432 11112 244455777776 4699999999988888888
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+ .+.+..+++|.++||++....-|...+.+.+++..+. ++|+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 8 4677889999999999999889999999999988886 7775
No 55
>PLN02712 arogenate dehydrogenase
Probab=98.84 E-value=8.9e-09 Score=115.92 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=82.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHH-hcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL-~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-+.++|||||+|.||+.+|+.|+.+|++|++||++.........|+....++++++ .++|+|++|+|. ..+..++.+-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 44578999999999999999999999999999987544445556777666888866 569999999995 4678887654
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
.+..||++++|+|++.-+..-.+++.+.+
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 45679999999999765432223444444
No 56
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.83 E-value=9.9e-09 Score=106.12 Aligned_cols=117 Identities=22% Similarity=0.365 Sum_probs=93.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
+.||++.|.|||.+|+.+|++|+++|++|+++.-.+-...+.......+.+++|....+||++.+. .++++|..+.
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~eh 282 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRKEH 282 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCHHH
Confidence 899999999999999999999999999999998766555554433334568999999999998765 4689999999
Q ss_pred HhcCCCCcEEEEcCCCCc-cCHHHHHHH-HHcCCceEEEEecCC
Q psy7383 253 IKQMRPGAFLVNTARGGL-VDDDSLAAA-LKQGRIRAAALDVHE 294 (501)
Q Consensus 253 l~~MK~gAilINvaRG~v-Vde~aL~~a-L~~g~I~GAaLDVfe 294 (501)
|..||+|+++.|.+.-.+ ||.+.|.+. ++...++. .+|-|+
T Consensus 283 ~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~-~V~ey~ 325 (420)
T COG0499 283 FEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRP-QVDEYE 325 (420)
T ss_pred HHhccCCeEEecccccceeccHHHHHHhhhhHhcccc-CceEEE
Confidence 999999999999998777 677777643 44455554 344443
No 57
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.83 E-value=1.3e-08 Score=105.15 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=75.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
|+||+|||||+|+||+++|+.|+.+|++|+++++.... ....+.|+.. .+.++++++||+|++++|...+ ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 57899999999999999999999999998876654322 2223557764 4788999999999999995433 444556
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~ 277 (501)
+....|+++. +|.++.| ++...+.
T Consensus 79 ei~~~l~~g~-iVs~aaG--~~i~~~~ 102 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHG--FNIHFVQ 102 (314)
T ss_pred HHHhhCCCCc-EEEEeCC--ccHhhcc
Confidence 6778899886 8888888 4444443
No 58
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.81 E-value=5.5e-08 Score=98.66 Aligned_cols=104 Identities=25% Similarity=0.231 Sum_probs=78.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------------hhhc------------CceecCCHHHHHhcC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------------EKSL------------GLTRVYTLQDLLFQS 231 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------------~~~~------------gv~~~~sLdelL~~s 231 (501)
++|+|||+|.||..||+.+...|++|++||++..... ..+. +...+.+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 5799999999999999999999999999998753210 0011 111122223568999
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHc
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~ 282 (501)
|+|+.++|..++.+..+-++..+.++++++|+ |++.- ....+.+.+..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 99999999999998888788888899999997 77664 45556666543
No 59
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.78 E-value=1.1e-07 Score=94.75 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=80.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC----EEEEE-CCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF----NVIFY-DPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~----~Vi~~-dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|||||+|+||+.|++.|...|+ +|++| ||+... ......|+....+..+++.+||+|+++++ ....+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999999888 89999 876533 22334677766788899999999999996 45566666
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3555678899999988766 577777766543
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.76 E-value=3.7e-08 Score=99.40 Aligned_cols=135 Identities=22% Similarity=0.199 Sum_probs=85.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc-eecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL-TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv-~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
++|+|||+|.||+.+|+.|+..|++|++||++... +.....+. ....+..+.+++||+|++++|... +..++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 37999999999999999999999999999987532 22223332 222223357899999999999543 33333 5667
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC---CCC--CCCCCCCCCCCCCeEEecCCC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE---SEP--YNVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe---~EP--l~~~~~pL~~~pNVilTPHiA 318 (501)
..+++++++++++.-.. . +++++.+..-. ++.... .|. ......-|+.-.++++||+-.
T Consensus 79 ~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~ 142 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA---P-IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN 142 (279)
T ss_pred HhCCCCcEEEeCcchHH---H-HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence 77899999999987542 2 23333222111 233221 110 000112366778899999754
No 61
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.75 E-value=7.2e-08 Score=98.47 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=92.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCc--eecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGL--TRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv--~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
-++|+|||+|.||+.+|+.|+..|. +|++||++... ......|+ ....++++++.++|+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 89999987532 22233443 22346788899999999999953 233333
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC---CCC--CCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES---EPY--NVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~---EPl--~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
++....++++.++++++....-..+++.+.+.. .+. +++...- |-. ......|+.-.++++||+.+. +.++
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~ 159 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAA 159 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHH
Confidence 455677899999999977542222333333322 222 4443221 100 011235667778999997543 4444
Q ss_pred HH
Q psy7383 325 CT 326 (501)
Q Consensus 325 ~~ 326 (501)
.+
T Consensus 160 ~~ 161 (307)
T PRK07502 160 VA 161 (307)
T ss_pred HH
Confidence 33
No 62
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.75 E-value=1.9e-08 Score=84.89 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=66.1
Q ss_pred eEEeeccchHHHHHHHHHHhCC---CEEEEE-CCCCCc--hhhhhcCceecC-CHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG---FNVIFY-DPYLPD--GIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG---~~Vi~~-dr~~~~--~~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
||||||+|+||+++++.|...| .+|+.+ +|+.+. ...+..++.... +..|++.++|+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 999954 887643 344556655444 7899999999999999943 233333
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG 268 (501)
.+. ....++.+||++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998644
No 63
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.74 E-value=1.7e-07 Score=94.96 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-------hc-----------------CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-------SL-----------------GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-------~~-----------------gv~~~~sLdelL~~ 230 (501)
++|+|||+|.||..+|..|...|++|++||++... +... .. .+....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987432 1100 00 12334578889999
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL-VNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil-INvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
||+|+.|+|...+.+..+-.+..+.++++++| +|+|.-. ...+.+.++. .-...++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence 99999999988777666656677888999877 7887744 4556665543 2222355555
No 64
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.74 E-value=4e-08 Score=100.54 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=68.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+++|+|||+|.||+.+|++|...|++|.+|+|+.. .+++++++++|+|++++|. ...+.+++. ..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~ 68 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQ 68 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HH
Confidence 457899999999999999999999999999998642 3678899999999999997 467777633 32
Q ss_pred h-cCCCCcEEEEcCCCCc
Q psy7383 254 K-QMRPGAFLVNTARGGL 270 (501)
Q Consensus 254 ~-~MK~gAilINvaRG~v 270 (501)
. .+++++++|++++|-.
T Consensus 69 ~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 69 ALNLPPETIIVTATKGLD 86 (308)
T ss_pred HhcCCCCcEEEEeCCccc
Confidence 3 4789999999988543
No 65
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.73 E-value=3.1e-08 Score=92.94 Aligned_cols=93 Identities=27% Similarity=0.347 Sum_probs=68.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
|++|+|+|||||..|++.|..|+..|.+|++-.+..+. ..+++.|++. .+.+|+++++|+|++.+|.. ....++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 68999999999999999999999999999988877552 4556678774 58999999999999999943 23455668
Q ss_pred HHHhcCCCCcEEEEcCCC
Q psy7383 251 FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG 268 (501)
+....||+|+.|+ .+.|
T Consensus 80 ~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHHS-TT-EEE-ESSS
T ss_pred HHHhhCCCCCEEE-eCCc
Confidence 8888999999775 4455
No 66
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.69 E-value=3.9e-07 Score=92.35 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=94.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-------------------------hcCceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-------------------------SLGLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-------------------------~~gv~~~~sLdelL~ 229 (501)
++|+|||.|.||..+|..+...|.+|++||++... +... ...+....+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 57999999999999999999999999999987531 0000 012334567888999
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc-CCceEEEEecCCCCCCCCCCCCCCCC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ-GRIRAAALDVHESEPYNVFQGNLKDA 308 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~-g~I~GAaLDVfe~EPl~~~~~pL~~~ 308 (501)
.||+|+.++|...+.+.-+-++....++++++|+..+.. +....+.+.++. .++.| +-. .+|.+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~r~vg--~Hf---------~~p~~~~ 150 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPEKFLA--LHF---------ANEIWKN 150 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcccEEE--EcC---------CCCCCcC
Confidence 999999999976666655556677788999988544333 344566666543 22332 221 2355667
Q ss_pred CCeEEecCCCCCcHHHHHHH
Q psy7383 309 PNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 309 pNVilTPHiAg~T~ea~~~~ 328 (501)
+.|.++|+-. .+++..+.+
T Consensus 151 ~lvevv~~~~-t~~~~~~~~ 169 (287)
T PRK08293 151 NTAEIMGHPG-TDPEVFDTV 169 (287)
T ss_pred CeEEEeCCCC-CCHHHHHHH
Confidence 8888888744 344544443
No 67
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.67 E-value=1.6e-07 Score=100.40 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=77.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee--cCCHHHHH---------------hcCCEEEEec
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR--VYTLQDLL---------------FQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~--~~sLdelL---------------~~sDvVil~l 238 (501)
++|+|||+|.||..+|..|+..|++|++||++...-.....|... -..+++++ ++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999875432111112111 11344443 3799999999
Q ss_pred cCc------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 239 TLN------EHNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 239 Plt------~~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
|.. ++...+. -+.....+++|+++|+.+.-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 953 2223332 24567789999999999998877777787766653
No 68
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.67 E-value=1.5e-07 Score=100.86 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=92.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce----------------ecCCHHHHHhcCCEEEEec
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT----------------RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~----------------~~~sLdelL~~sDvVil~l 238 (501)
.++|||||+|.||..+|..|.. |++|++||++...-.....|.. .+.+..+.+++||++++|+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 4789999999999999999877 7999999987643211112211 2233345789999999999
Q ss_pred cCc------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC--Cce-E-EEEecCCCCCCCCC--CCC
Q psy7383 239 TLN------EHNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG--RIR-A-AALDVHESEPYNVF--QGN 304 (501)
Q Consensus 239 Plt------~~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g--~I~-G-AaLDVfe~EPl~~~--~~p 304 (501)
|.. ++...++ .+...+.+++|.++|+.|.-.+-..+.+++.+.+. .+. + ...=+|-.||+... .+.
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 964 3445555 35577889999999999999888777665444332 222 1 11114677888641 234
Q ss_pred CCCCCCeEE
Q psy7383 305 LKDAPNILC 313 (501)
Q Consensus 305 L~~~pNVil 313 (501)
+...+.|+.
T Consensus 165 ~~~~~riv~ 173 (425)
T PRK15182 165 LTNIKKITS 173 (425)
T ss_pred ccCCCeEEE
Confidence 556666654
No 69
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.66 E-value=1e-07 Score=96.39 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=80.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC----EEEEECCCCCch-h-hhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF----NVIFYDPYLPDG-I-EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~----~Vi~~dr~~~~~-~-~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|||||+|+||++|++.|...|+ +|++|||+.... . .+..|+....+.++++.+||+|+++++. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 579999999999999999988774 699999875431 1 2236776666888999999999999994 5566665
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
++....++++.++|++.-| |+.+.|.+.|.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3455567889999999999 88888888774
No 70
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.66 E-value=4.2e-08 Score=105.00 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=72.8
Q ss_pred cccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC------C-CchhhhhcCceecCCHHHHHhcCCEEEEeccCch
Q psy7383 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY------L-PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 170 ~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~------~-~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
...|+||||+|||||.+|+.-|..|+..|.+|++--|. . ....+.+.|+. +.+++|++++||+|++.+|++
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~ADvVviLlPDt- 108 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDK- 108 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhCCEEEEcCChH-
Confidence 35699999999999999997777777777777733322 1 11223335665 468999999999999999998
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+ ++.++++.+..||+|++|. .|.|
T Consensus 109 ~-q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 109 Q-HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 4 7777799999999999874 4454
No 71
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.66 E-value=3e-07 Score=96.32 Aligned_cols=135 Identities=24% Similarity=0.285 Sum_probs=89.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhc--Cce--ecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSL--GLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~--gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+|+.|+..|++|.+|++..... ..... ++. ...++++++++||+|++++|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 479999999999999999999999998888765432 22222 221 1246788899999999999964 5666663
Q ss_pred HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC--------CCCCCCCCCCeEEecCCC
Q psy7383 251 FTIK-QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV--------FQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 251 ~~l~-~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~--------~~~pL~~~pNVilTPHiA 318 (501)
+... .+++++++++++.-+.-..+++.+.+. .... +++.. |..- .+..|+.....++||+-.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~ 149 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH 149 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence 3434 489999999998866433333333321 2222 44432 4321 012466667789999754
No 72
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.63 E-value=2.6e-07 Score=89.46 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=83.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI 248 (501)
+++||+|+|+|+|+||+.+|++|..+|++|+++|++... ......+.+.+ +.++++. +||+++.+.. .++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cccc
Confidence 589999999999999999999999999999999987542 12223355544 4566665 8999986654 4789
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+++.++.|+. -+++.-+-+.+.| ..-.+.|++..|.
T Consensus 99 ~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 99 NDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 9999999984 5788888887766 5567788888876
No 73
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.63 E-value=2.4e-07 Score=93.47 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=78.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCc---hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPD---GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~---~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
.++|+|||+|+||++|++.|...| .+|++|||+..+ ......++....+..+++.+||+|++++|.. +...+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHH
Confidence 468999999999999999999887 789999986532 2223357766668889999999999999943 34444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+ .+....++++.+||++.-| +..+.|.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4 4555667889999999766 57777777654
No 74
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=1.6e-07 Score=92.78 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=99.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHH---HhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDL---LFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdel---L~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
+++|+||+|+||..++++|...|.+|++||++... +..+..+.+.+.+++|+ |...-+|.+++|...-|..+| ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 47899999999999999999999999999998743 34455667777788887 456799999999887777777 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
+-..|.+|-++|+-+....-|.....+.|++..|. +|||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 77889999999999999999999999999999998 899853
No 75
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.61 E-value=4.3e-07 Score=91.39 Aligned_cols=132 Identities=17% Similarity=0.301 Sum_probs=83.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCce-ecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGLT-RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv~-~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|+|||+|.||+.+|+.|+..|. +|++||++... ......|+. ...+++++. ++|+|++++|... +..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 379999999999999999998775 89999987532 222344542 334677765 5999999999543 44444 34
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC---C---CCCCCCCCCCCCCCeEEecCC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES---E---PYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~---E---Pl~~~~~pL~~~pNVilTPHi 317 (501)
... +++++++++++.- ...+.+.+.+.. .+.+++.... | |... ...|++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a-~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAA-IKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhc-cHHHhCCCeEEEecCC
Confidence 556 8999999997552 344555554431 1124444332 1 1111 1135555567888854
No 76
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.61 E-value=7.3e-07 Score=94.89 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=76.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhh------------------hcC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEK------------------SLG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~------------------~~g-v~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|...|++|++||++...- ... ..| +....++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 379999999999999999999999999999875321 110 013 44445788889999999
Q ss_pred EEeccCchh------hhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 235 SLHCTLNEH------NHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 235 il~lPlt~~------T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
++++|.... ...+. -.+..+.++++.++|+++.-.+=..+.+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999995432 12222 24566778999999999876555666665444
No 77
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.59 E-value=9.3e-08 Score=100.76 Aligned_cols=95 Identities=23% Similarity=0.405 Sum_probs=74.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCce---e---cCCHHHHHhcCCEEEEeccCc-h
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLT---R---VYTLQDLLFQSDCVSLHCTLN-E 242 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~---~---~~sLdelL~~sDvVil~lPlt-~ 242 (501)
.+.+++|.|||+|.+|+.+++.|+.+|++|+++|++... ......+.. . ...+++.++++|+||.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 467889999999999999999999999999999987532 111222221 1 124677889999999998652 3
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINva 266 (501)
.+..+|+++.++.||++++|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356789999999999999999997
No 78
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=4.9e-07 Score=93.71 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=82.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh------------hhc---------CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE------------KSL---------GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~------------~~~---------gv~~~~sLdelL~~sDvV 234 (501)
++|+|||.|.||..+|..+...|++|++||+....... ... .+....++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987531100 001 124456888999999999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+-++|.+.+.+..+-++..+.++++++| .++... +...++.+.++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence 9999999999998888999999999955 444433 566777777754
No 79
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.59 E-value=9.6e-07 Score=93.21 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=69.7
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
..++|+||| +|.||+.+|+.|+..|++|.+||+.. ..+.++++++||+|++|+|... +..++ ++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~------------~~~~~~~~~~aDlVilavP~~~-~~~~~-~~l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD------------WDRAEDILADAGMVIVSVPIHL-TEEVI-ARL 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc------------chhHHHHHhcCCEEEEeCcHHH-HHHHH-HHH
Confidence 458899998 99999999999999999999999742 1256788999999999999663 45555 344
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
.. ++++++|++++.-+..-.+++.+
T Consensus 163 ~~-l~~~~iv~Dv~SvK~~~~~~~~~ 187 (374)
T PRK11199 163 PP-LPEDCILVDLTSVKNAPLQAMLA 187 (374)
T ss_pred hC-CCCCcEEEECCCccHHHHHHHHH
Confidence 44 99999999997754333334443
No 80
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=9.8e-07 Score=89.45 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=75.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhh-----------hcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEK-----------SLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~-----------~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..+...|++|++||++.... ... ..+ +....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 679999999999999999999999999999875321 100 012 23344664 4789
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHH
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALK 281 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~ 281 (501)
||+|+.++|...+.+..+-++..+.++++++|+ |++.-. ...|.+.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~ 132 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD 132 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence 999999999877766655567778899999998 666543 346777664
No 81
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.57 E-value=8.3e-07 Score=96.89 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=82.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh--h------------------hcC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE--K------------------SLG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~--~------------------~~g-v~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|...|++|++||++...... . ..+ +....++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 57999999999999999999999999999987542110 0 112 45566888999999999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
+.++|...+.+..+-++..+.++++++|+....| +....|.+.+..... ..+|-+-+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~~s~l~~~~~~~~r--~~~~hP~n 141 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FLPSDLQEGMTHPER--LFVAHPYN 141 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCcce--EEEEecCC
Confidence 9999988776765545555667888765444444 446677777755332 25554433
No 82
>KOG1370|consensus
Probab=98.56 E-value=1.5e-07 Score=95.67 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=78.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
+.||.+.|.|||..|+..|+.|++||.+|++....+-.++... .|++ +.+++|++++.||++.+. ..+++|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 7899999999999999999999999999999866554444433 3444 569999999999998754 468899999
Q ss_pred HHhcCCCCcEEEEcCCCCc
Q psy7383 252 TIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~v 270 (501)
.|.+||.++++.|++.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999998655
No 83
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.55 E-value=1e-06 Score=89.76 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---hhhhcCceec--CCH-HHHHhcCCEEEEeccCchhhhhcc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---IEKSLGLTRV--YTL-QDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~~~~~gv~~~--~sL-delL~~sDvVil~lPlt~~T~~lI 248 (501)
-++|+|+|+|.||+.+|+.++..|..|.++++....+ ....+|+... .+. .+.+.++|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 3689999999999999999999999886666554322 2233554321 222 56788899999999954 455555
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC--CCCCCCCCCeEEecCCC
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF--QGNLKDAPNILCTPHAA 318 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~--~~pL~~~pNVilTPHiA 318 (501)
++....+|+|+++++++.-+---.+++.+.+.+.. . +...=|+--. +.+|+..-.+|+||.-.
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCC
Confidence 45555899999999998866544445554443321 1 1223343211 35788888899999644
No 84
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.54 E-value=3.8e-07 Score=83.05 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=79.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCc----eecCCHHHHHhcCCEEEEeccCchh-h
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGL----TRVYTLQDLLFQSDCVSLHCTLNEH-N 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv----~~~~sLdelL~~sDvVil~lPlt~~-T 244 (501)
+.+++|+|+|+|.||+.+++.|...| .+|.+||++... ...+..+. ....++++++.++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 66899999999999999999999986 789999987543 22223332 1334677889999999999997643 1
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 245 HH-LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 245 ~~-lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.. .+.. ..++++.+++|++.-... + .|.+.+++..+.
T Consensus 97 ~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~ 134 (155)
T cd01065 97 DELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK 134 (155)
T ss_pred CCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc
Confidence 22 2332 236899999999876533 3 788888877653
No 85
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.53 E-value=1.9e-06 Score=88.33 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=87.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh-----------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI-----------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-----------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..|...|++|++||++... +. ....| +....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999987532 11 01122 2445688899999
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPN 310 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pN 310 (501)
||+|+.++|...+.+..+-.+.-+.+++..+++.... ......+.+.+..... ...|-+-. |.. ..+=
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~hp~~-p~~-------~~~l 150 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVAHPIN-PPY-------LIPV 150 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEEecCC-Ccc-------cCce
Confidence 9999999997655444443333333455555543333 2456667777754332 24454432 211 1123
Q ss_pred eEEecCCCCCcHHHHHH
Q psy7383 311 ILCTPHAAFYSEASCTE 327 (501)
Q Consensus 311 VilTPHiAg~T~ea~~~ 327 (501)
|.++||-.+ +++..++
T Consensus 151 veiv~~~~t-~~~~~~~ 166 (308)
T PRK06129 151 VEVVPAPWT-APATLAR 166 (308)
T ss_pred EEEeCCCCC-CHHHHHH
Confidence 678887543 3444443
No 86
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.52 E-value=4.2e-07 Score=93.60 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------C------ceecCCHHHHHhcCCEEEEecc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------G------LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------g------v~~~~sLdelL~~sDvVil~lP 239 (501)
.++|+|||+|.||..+|.+|...|++|.+|+|+... +..... + +....+++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 358999999999999999999999999999997432 111111 2 3345578888999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC-CccC--HHHHHHHHHc
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG-GLVD--DDSLAAALKQ 282 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG-~vVd--e~aL~~aL~~ 282 (501)
.. ++ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 55 22 5666889999999999997 3222 4566666654
No 87
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.51 E-value=2.3e-06 Score=87.13 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=81.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h-----------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I-----------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~-----------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|||||.|.||..||..+...|++|+.||+..... . ..+.| +....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 489999999999999999999999999999875421 1 11112 1234566 45899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQM-RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~M-K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+ +...++..+++... ...++..|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~--~~~~~la~~~~~~~-r~~g~hf~~ 146 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS--IPIMKLAAATKRPG-RVLGLHFFN 146 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCCc-cEEEEecCC
Confidence 99999999999998888766555555 899999988776 44455555443321 123455554
No 88
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.51 E-value=1.4e-06 Score=95.45 Aligned_cols=113 Identities=27% Similarity=0.335 Sum_probs=84.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h-----------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I-----------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~-----------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|||||.|.||..||..+...|++|++||++...- . ..+.| +....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 679999999999999999999999999999875421 1 11223 344557765 569
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHc-CCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL-VNTARGGLVDDDSLAAALKQ-GRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil-INvaRG~vVde~aL~~aL~~-g~I~GAaLDVfe 294 (501)
||+||.++|.+.+.+..+-.+.-..++++++| +|+|.-.+ ..|.++++. .++ .++..|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~ 147 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFN 147 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecC
Confidence 99999999999998888776666677899999 59988554 466666653 333 3556555
No 89
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.50 E-value=1.1e-06 Score=100.03 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=92.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCc-hhhhhcCce--ecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPD-GIEKSLGLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~-~~~~~~gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+++.|+..| .+|++||++... ....+.|+. ...++++++.++|+|++++|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999988 589999987643 223344543 2346788899999999999954 344444 3
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC--------CCCCCCCCCCCeEEecCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN--------VFQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~--------~~~~pL~~~pNVilTPHiAg 319 (501)
+....++++.++++++.-.....+.+.+.+....+ .+...=|.. ..+..|+.-.++++||+...
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 44556788999999988553335555555543222 222222321 11235777788899997543
No 90
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.49 E-value=3.9e-07 Score=93.47 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=91.9
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|+|||.| .||+.||.+|...|++|++|+++.. ++.+++++||+|+++++.. +++..
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-------------~l~e~~~~ADIVIsavg~~----~~v~~ 218 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-------------DAKALCRQADIVVAAVGRP----RLIDA 218 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCCh----hcccH
Confidence 5999999999996 9999999999999999999986531 6889999999999999854 45655
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC--CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG--RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g--~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
.. +|+|+++||++--.+.+ +| ++.| ||-.++-.. .--.+||=-+|.-.=+..-+
T Consensus 219 ~~---ik~GaiVIDvgin~~~~---------~g~~kl~G---Dvdf~~~~~---------~a~~iTPVPGGVGp~Tva~L 274 (301)
T PRK14194 219 DW---LKPGAVVIDVGINRIDD---------DGRSRLVG---DVDFDSALP---------VVSAITPVPGGVGPMTIAFL 274 (301)
T ss_pred hh---ccCCcEEEEecccccCC---------CCCcceec---ccchHHHHh---------hcceecCCCCchhHHHHHHH
Confidence 44 89999999998654321 13 5555 764222110 11368997777655554545
Q ss_pred HHHHHHHHHHHHh
Q psy7383 329 REMAASEIRRAIV 341 (501)
Q Consensus 329 ~~~~~~ni~~~l~ 341 (501)
.+-+++..+++..
T Consensus 275 ~~N~~~a~~~~~~ 287 (301)
T PRK14194 275 MKNTVTAARLQAH 287 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 91
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.49 E-value=3.4e-07 Score=92.61 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCeEEeeccchHHHHHHHHHHh--CCCEEE-EECCCCCc--hhhhhcCc-eecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA--FGFNVI-FYDPYLPD--GIEKSLGL-TRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a--fG~~Vi-~~dr~~~~--~~~~~~gv-~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..+|||||+|.||+.+++.+.. .+++|. +||+.... ......+. ..+.++++++.++|+|++|+|... ..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHH
Confidence 4789999999999999999986 488876 67876543 22233443 345689999999999999998432 2222
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
..+.++.|.-++..+++.+.+.++|.++++++...
T Consensus 84 ---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 84 ---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 23334667667778899888899999998887654
No 92
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.48 E-value=3.1e-06 Score=89.38 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=83.1
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHh-CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKA-FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~a-fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+...||+|||+ |.||+.+|+.|+. ++.+|++||+... ...++++.+++||+|++|+|.. .+..++.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~v~~aDlVilavPv~-~~~~~l~- 69 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATLLQRADVLIFSAPIR-HTAALIE- 69 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 45679999999 9999999999986 5999999997411 1236788899999999999954 3445542
Q ss_pred HHH---hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC-CCCCCCCCCCeEEecC
Q psy7383 251 FTI---KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV-FQGNLKDAPNILCTPH 316 (501)
Q Consensus 251 ~~l---~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~-~~~pL~~~pNVilTPH 316 (501)
+.. ..+|++++++|++.-+- .+++++..... ++.-.=|.-- ..+.+++.-++++||.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 232 24899999999998552 22222222111 1222334321 1245677778999987
No 93
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.47 E-value=2.6e-06 Score=86.90 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=74.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-----hcC--------------ceecCCHHHHHhcCCEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-----SLG--------------LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-----~~g--------------v~~~~sLdelL~~sDvVi 235 (501)
++|+|||+|.||..+|..|...|++|++||++... +... ..+ +....++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999986532 1110 011 233456788899999999
Q ss_pred EeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc-CCceE
Q psy7383 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ-GRIRA 287 (501)
Q Consensus 236 l~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~-g~I~G 287 (501)
+++|...+...-+-++.-..++++++|+...-| +....|.+.+.. .++.+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig 135 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVG 135 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEE
Confidence 999976543333334444556778777544444 446677777653 34443
No 94
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.47 E-value=3.6e-06 Score=84.89 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=77.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch------------hhhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG------------IEKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~------------~~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..+...|++|++||++.... ...+.+ +....+++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 479999999999999999999999999999765321 011112 22234554 4799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
||+|++++|...+.+.-+-++..+.++++++|+....+ +....|.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999987777755556677789999999555555 666688887743
No 95
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=1.9e-06 Score=87.88 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=85.3
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|.|||.|.+ |+.+|.+|...|++|++++.+ ..++.+.+++||+|+++++ +.++|+.
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV~avG----~~~~i~~ 217 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVVAAVG----KRNVLTA 217 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEEEcCC----CcCccCH
Confidence 589999999999999 999999999999999987632 1368899999999999998 5678887
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+.+|+|+++||++--.+. +|++.| ||-.++=.. ---.+||=-+|.-.=+..
T Consensus 218 ---~~ik~gavVIDVGin~~~----------~gkl~G---DVd~~~v~~---------~a~~iTPVPGGVGp~T~a 268 (285)
T PRK14189 218 ---DMVKPGATVIDVGMNRDD----------AGKLCG---DVDFAGVKE---------VAGYITPVPGGVGPMTIT 268 (285)
T ss_pred ---HHcCCCCEEEEccccccC----------CCCeeC---CccHHHHHh---------hceEecCCCCCchHHHHH
Confidence 568999999999975532 256666 764221111 114689976665544333
No 96
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.45 E-value=8.8e-07 Score=91.32 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCc------hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPD------GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~------~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|+.||++|...|++|++||++... ......|+..+.+..+++++||+|++++|..++++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 789999999999999999987531 12445688888889999999999999999888888887 56899999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHc
Q psy7383 261 FLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL~~ 282 (501)
++||++. ++.+.+++.|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999987 566666666655
No 97
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.42 E-value=6.6e-07 Score=91.11 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=70.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------------CceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------------GLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------------gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||+|.||..+|..|...|++|.+||+.... +..... ++....+++++++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 47999999999999999999999999999987432 111111 244455788899999999999995
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
..+..++ .+....+++++++|+++.|-
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence 4566665 35566778999999998663
No 98
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.41 E-value=4.2e-06 Score=91.72 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=84.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|++||++...-. ..+.| +....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 6799999999999999999999999999998753210 01122 234556765 579
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EP 297 (501)
||+||.++|...+.+..+-.+.-+.++++++|. |++.- +...+.+.++. .....++..|..-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl---~i~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL---SITAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC---CHHHHHHhcCc-ccceEEEeccCccc
Confidence 999999999988888877677767788998877 77664 44566776643 23344666665333
No 99
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.38 E-value=1.3e-06 Score=94.67 Aligned_cols=104 Identities=15% Similarity=0.260 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCch--hhhh----cCceecCCHHHHHhc---CCEEEEeccCchhhhhcccHHHHhcC
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPDG--IEKS----LGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHLINEFTIKQM 256 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~----~gv~~~~sLdelL~~---sDvVil~lPlt~~T~~lI~~~~l~~M 256 (501)
||+.||++|...|++|.+|||+.... +.+. .++..+.+++|+++. +|+|++++|..+.+..+| .+.+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 79999999999999999999986532 2221 146677899999874 899999999999999998 5688999
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 257 K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+|.++||++....-|...+.+.+++..+. ++|+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999999887 6664
No 100
>PRK07680 late competence protein ComER; Validated
Probab=98.37 E-value=1.7e-06 Score=86.97 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=75.9
Q ss_pred eEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCch--hhhhc-CceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDG--IEKSL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~--~~~~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+|+|||+|.||+.+++.|...| .+|.+|||+.... ..... ++....+..+++.++|+|++++| ..+...++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998888 3799999975321 11222 56555678888999999999997 33345555
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3455667889999999865 57777777665
No 101
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.37 E-value=9e-06 Score=82.49 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=76.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h--h--h----------hcC-------------ceecCCHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I--E--K----------SLG-------------LTRVYTLQDL 227 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~--~--~----------~~g-------------v~~~~sLdel 227 (501)
++|+|||.|.||..+|..+...|++|++||++...- . . . ..+ +....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 579999999999999999999999999999875321 0 0 0 001 1122344 56
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+++||+|+.++|...+.+.-+-++.-+.++++++|++...| +....|.+.+..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~ 135 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER 135 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence 79999999999977655555545566678999999988777 566777777753
No 102
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.36 E-value=1.5e-06 Score=82.18 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=86.1
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|.|++|.|||.|.+ |+.+|+.|...|++|.+.+++. .++.+.+.++|+||.+++.. ++|.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 489999999999996 8889999999999999998752 25778999999999998733 37887
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+. ++++.+|||++....+| ..++++.| || +.|.. .+. ...+||=-+++..-+
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G---~~-d~~~~-------~~~-~~~~~~~pggvgp~t 155 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG---DV-DFESA-------KEK-ASAITPVPGGVGPMT 155 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC---Cc-CHHHH-------Hhh-ccCcCCCCCcChHHH
Confidence 75 57899999999988787 56667766 44 22211 111 456777666665533
No 103
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.35 E-value=1.6e-06 Score=86.36 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=75.2
Q ss_pred eEEeeccchHHHHHHHHHHhCCCE---EEEECCCCCch--hhhhc-CceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFN---VIFYDPYLPDG--IEKSL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~---Vi~~dr~~~~~--~~~~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|||||+|+||+.+++.|...|.. |.+|||+.... ..+.. ++....+.+++++++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 699999999999999999887753 57888865432 22223 35555688899999999999999 3445555432
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+ .++++.++|.+.-| +..+.|.+.+..+
T Consensus 81 --l-~~~~~~~vis~~ag--~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVIAA--TDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEECCC--CCHHHHHHHhCCC
Confidence 3 35789999998854 8888888888654
No 104
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=6.3e-06 Score=84.10 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=89.0
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|+|||. |.+|+.||.+|...|+.|++|..+ ..++.+.+++||+|+++++.. +++..
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~avg~~----~~v~~ 217 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVVAIGRG----HFVTK 217 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEEecCcc----ccCCH
Confidence 589999999999 999999999999999999999421 126889999999999999843 45665
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. +|+|+++||++--.+. +|++.| ||-..+-.. . --.+||=-+|.-.=+..-+.+
T Consensus 218 ~~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v~~-----~----a~~iTPVPGGVGp~T~a~L~~ 272 (284)
T PRK14179 218 EF---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEVAE-----V----ASYITPVPGGVGPMTITMLME 272 (284)
T ss_pred HH---ccCCcEEEEecceecC----------CCCeec---CccHHHHHh-----h----ccEecCCCCCchHHHHHHHHH
Confidence 44 8999999999855432 356766 764322111 0 136899877765544444444
Q ss_pred HHHHHHHHH
Q psy7383 331 MAASEIRRA 339 (501)
Q Consensus 331 ~~~~ni~~~ 339 (501)
-+++..+++
T Consensus 273 N~~~a~~~~ 281 (284)
T PRK14179 273 QTYQAALRS 281 (284)
T ss_pred HHHHHHHHH
Confidence 444444443
No 105
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=2.3e-06 Score=87.85 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=65.7
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|+||| .|.||+.||++|...|+.|++|+.+.. ++++++++||+|+++++... ++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------------~l~e~~~~ADIVIsavg~~~----~v~~ 217 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------------DLPAVCRRADILVAAVGRPE----MVKG 217 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCChh----hcch
Confidence 58999999999 999999999999999999999963211 47899999999999998543 4554
Q ss_pred HHHhcCCCCcEEEEcCCCCc
Q psy7383 251 FTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v 270 (501)
.. +|+|+++||++--.+
T Consensus 218 ~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 218 DW---IKPGATVIDVGINRI 234 (296)
T ss_pred he---ecCCCEEEEcCCccc
Confidence 33 899999999986543
No 106
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.30 E-value=4.2e-06 Score=88.89 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=85.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhh----------------cCcee--cCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKS----------------LGLTR--VYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~----------------~gv~~--~~sLdelL~~sDvVil 236 (501)
++|+|||+|.||..+|..+. .|++|++||+....- ...+ .+... ..+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997666 599999999875321 1100 11121 1235677899999999
Q ss_pred eccCchh-------hhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC--CCCC
Q psy7383 237 HCTLNEH-------NHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF--QGNL 305 (501)
Q Consensus 237 ~lPlt~~-------T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~--~~pL 305 (501)
++|..-+ ...+.. ++..+ +++|.++|+.|.-.+=..+.+.+.+.+..+. |..|.+.+. -+.+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYDN 152 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCcccccc
Confidence 9995411 112111 33444 7999999999998888888888887765443 466665431 1234
Q ss_pred CCCCCeEE
Q psy7383 306 KDAPNILC 313 (501)
Q Consensus 306 ~~~pNVil 313 (501)
+..|.|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 44455544
No 107
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.28 E-value=1.4e-05 Score=87.43 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=103.7
Q ss_pred CCHHHHhcCCC-CcEEEEcCccccccchhhhhhcCeEEeecCCCC--c--------hhhHHHHHHHHHHHHhhHHHHHHH
Q psy7383 82 LTKEDLEKFKT-LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG--V--------EEVADTTLCLILNLYRRTYWLANM 150 (501)
Q Consensus 82 l~~e~l~~~p~-LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~--a--------~aVAE~alal~L~l~R~~~~~~~~ 150 (501)
.+.+.++.+.. --+|....-..|.=-++++.+++|++....-.. . .++++.+= +|-..+..+.
T Consensus 74 P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~ 147 (511)
T TIGR00561 74 PSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHE 147 (511)
T ss_pred CCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHH
Confidence 35666777644 444555554445445677888898877532111 1 22333221 1111111111
Q ss_pred HHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec--C-----
Q psy7383 151 VREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV--Y----- 222 (501)
Q Consensus 151 ~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~--~----- 222 (501)
-++++.+. ....+ .+.+.+|.|+|+|.+|...++.++.+|++|+++|++... +..+.+|.+.+ +
T Consensus 148 --lgr~~~g~----~taag--~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g 219 (511)
T TIGR00561 148 --FGRFFTGQ----ITAAG--KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEG 219 (511)
T ss_pred --hhhhcCCc----eecCC--CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccc
Confidence 11112110 01111 356789999999999999999999999999999987532 33334454321 0
Q ss_pred ----------C----------HHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 223 ----------T----------LQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 223 ----------s----------LdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ +.+.++++|+|+.++-. ....-.++.++.++.||+|+++||++-
T Consensus 220 ~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 220 GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 1 34557889999887721 112346889999999999999999975
No 108
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.28 E-value=5.4e-06 Score=83.89 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=74.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCch---hhhhc-CceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDG---IEKSL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~---~~~~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
.+|+|||+|.||+.+++.|...| .+|++|+++.... ..... ++....+.++++.++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 46999999999999999998887 6899999864321 11122 233345788899999999999993 234444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+ .+....++++.+||.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 3344557788899999988 78888888664
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.25 E-value=1.5e-06 Score=78.92 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=71.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc--hhhhhcC---c--eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD--GIEKSLG---L--TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~--~~~~~~g---v--~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
+++++++.|||.|.+|+.++..|...|++ |++++|+..+ .+...++ + ....++.+.+.++|+|+.+.|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 58999999999999999999999999987 9999998643 2223331 2 233456677999999999988543
Q ss_pred hhhcccHHHHhcCCCCc-EEEEcCCCCccC
Q psy7383 244 NHHLINEFTIKQMRPGA-FLVNTARGGLVD 272 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gA-ilINvaRG~vVd 272 (501)
..+.++.++..++.. ++++++...-||
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred --cccCHHHHHHHHhhhhceeccccCCCCC
Confidence 378888888776654 888887654343
No 110
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.24 E-value=6e-06 Score=82.31 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=71.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCC---CEEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG---FNVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG---~~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+++.+...| .+|.+|||+.... .....++....+.++++.++|+|++++|.. ..+.++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence 47999999999999999999888 7899999975321 222236655567888899999999999833 3344332
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+....+ +.++|.+.-| +..+.|.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~g--i~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAG--VTLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCC--CCHHHHHHhcC
Confidence 222233 4688888776 46667776664
No 111
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.18 E-value=8.6e-06 Score=79.97 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=72.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC---CE-EEEECCCC-Cc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG---FN-VIFYDPYL-PD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG---~~-Vi~~dr~~-~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
.++|+|||+|+||+.+++.+...| .+ |++++++. .. ......++....++++++.++|+|++++|.. ..+.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHHH
Confidence 578999999999999999997765 33 77888753 21 2233356665668889999999999999943 33333
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+ ++.-..++ +.++|.++-| ++.+.|.+.+..+
T Consensus 83 ~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 83 L-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred H-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 3 22222334 6799999887 7777777776554
No 112
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.17 E-value=6.7e-06 Score=76.32 Aligned_cols=91 Identities=15% Similarity=0.310 Sum_probs=64.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhh-------------cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKS-------------LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~-------------~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+|+|+|.|++|.++|..|...|.+|..|.+.... ..... ..+....+++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 6899999999999999999999999999987421 11110 12334468999999999999999944
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
. .+.++ ++....++++..+|++..|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 2 33333 56667788999999998873
No 113
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.14 E-value=1e-05 Score=83.43 Aligned_cols=108 Identities=24% Similarity=0.247 Sum_probs=76.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-----------------ecCCHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-----------------RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-----------------~~~sLdelL~~sDvVil~l 238 (501)
++|+|||.|.||..+|..|...|++|.+||+....+..+..+.. ...+. +.+..+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 57999999999999999999999999999985422222222221 12233 5678999999999
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
+.. +...++ ++....++++.++|.+.-| +...+.+.+.+.+.++..
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 854 445554 4566678899999988665 444566777776655543
No 114
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.14 E-value=7.1e-06 Score=82.66 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=72.6
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCE-EEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFN-VIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~-Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||+|.||+.+++.+... +++ +.+||++... ...+..+...+.++++++.++|+|++|+|.. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 4799999999999999998865 566 4568887543 2223445555678999999999999998732 221 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDD---DSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde---~aL~~aL~~g~I~ 286 (501)
-....|+.|.-+|.++-|.+.|. +.|.++.+++...
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 22334455666677777877764 4667777776544
No 115
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.14 E-value=2.9e-05 Score=85.18 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=107.7
Q ss_pred ceEEEEeccCCCCHHHHhcCCC-CcEEEEcCccccccchhhhhhcCeEEeecCCCC--c--------hhhHHHHHHHHHH
Q psy7383 71 AVGALMWHTIILTKEDLEKFKT-LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG--V--------EEVADTTLCLILN 139 (501)
Q Consensus 71 a~~vli~~~~~l~~e~l~~~p~-LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~--a--------~aVAE~alal~L~ 139 (501)
+|.++-.. ..+.+.++.++. --+|.......|.=-++.+.+++|++....-.- + .++|+.+=
T Consensus 66 ~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----- 138 (509)
T PRK09424 66 SDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----- 138 (509)
T ss_pred CCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence 45444333 245667777754 445566555555555778889998877532111 0 12233211
Q ss_pred HHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc
Q psy7383 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 140 l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv 218 (501)
+|-+....+ .-++.+.+.. ...+ ...+.+|.|+|.|.+|...++.++.+|++|+++|++... +..+++|.
T Consensus 139 -y~Av~~aa~--~~~~~~~g~~----taaG--~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 139 -YRAVIEAAH--EFGRFFTGQI----TAAG--KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred -HHHHHHHHH--HhcccCCCce----eccC--CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 111111111 1122111100 0111 356999999999999999999999999999999987643 44555665
Q ss_pred eec--C-----------------CH--------HHHHhcCCEEEEeccCch-hhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 219 TRV--Y-----------------TL--------QDLLFQSDCVSLHCTLNE-HNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 219 ~~~--~-----------------sL--------delL~~sDvVil~lPlt~-~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+ . +. .+.+.++|+||.+.-... ....+|.++.++.||+|+++|+++=
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 522 1 00 111256999998875321 1234667899999999999999974
No 116
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.12 E-value=2.3e-06 Score=83.34 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHH--HhCCCEEEE-
Q psy7383 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA--KAFGFNVIF- 203 (501)
Q Consensus 127 ~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L--~afG~~Vi~- 203 (501)
...++|.+..++...|++. .|. ..++|+|||+|.+|+.+++.+ ...|+++++
T Consensus 61 ~~~~gy~v~~l~~~~~~~l---------~~~----------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv 115 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKIL---------GLD----------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAA 115 (213)
T ss_pred CCCCCeeHHHHHHHHHHHh---------CCC----------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEE
Confidence 4455688888888887763 110 235799999999999999863 467898775
Q ss_pred ECCCCCchhhhhcC--ceecCCHHHHHhc--CCEEEEeccCchh---hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q psy7383 204 YDPYLPDGIEKSLG--LTRVYTLQDLLFQ--SDCVSLHCTLNEH---NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 204 ~dr~~~~~~~~~~g--v~~~~sLdelL~~--sDvVil~lPlt~~---T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL 276 (501)
+|+..........+ +....++++++++ .|+|++++|.+.. ...++......-|....+.+|+.+|.+|+.++|
T Consensus 116 ~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l 195 (213)
T PRK05472 116 FDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDL 195 (213)
T ss_pred EECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEech
Confidence 56543221111112 2223467777765 9999999997654 223333444555777889999999999999999
Q ss_pred HHHHHc
Q psy7383 277 AAALKQ 282 (501)
Q Consensus 277 ~~aL~~ 282 (501)
..+|..
T Consensus 196 ~~~l~~ 201 (213)
T PRK05472 196 TVELQT 201 (213)
T ss_pred HHHHHH
Confidence 998864
No 117
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.12 E-value=2.2e-06 Score=77.59 Aligned_cols=108 Identities=25% Similarity=0.360 Sum_probs=61.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEE-CCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-DPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~-dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
...+|+|||.|++|..+++.|...|++|..+ +|+.... .....+...+.+++|++.++|+|++++|++ ....+ -+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence 4568999999999999999999999998775 5543221 122233344557889999999999999965 33333 23
Q ss_pred HHHhc--CCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 251 FTIKQ--MRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 251 ~~l~~--MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++-.. .++|.+++-||= . ...+-|.-+-+.|-+
T Consensus 87 ~La~~~~~~~g~iVvHtSG-a-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSG-A-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES-S-S---GGGGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECCC-C-ChHHhhhhHHHCCCe
Confidence 34333 689999999953 2 344444444444443
No 118
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=9.3e-06 Score=82.97 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=85.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|+||+|.|||.|. +|+.+|..|...|++|++++++. .++.+.+++||+|+.+++. .++|.+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVIsAvg~----p~~i~~ 217 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIVSAVGK----PGLVTK 217 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEEECCCC----CcccCH
Confidence 58999999999999 99999999999999999988542 2688999999999999973 457877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
+. +|+|+++||++--.. .+|++.| ||-..+=.. . --.+||=-+|.-.-+...+.
T Consensus 218 ~~---vk~gavVIDvGi~~~----------~~gkl~G---Dvd~~~~~~-----~----a~~iTPVPGGVGp~T~a~L~ 271 (286)
T PRK14175 218 DV---VKEGAVIIDVGNTPD----------ENGKLKG---DVDYDAVKE-----I----AGAITPVPGGVGPLTITMVL 271 (286)
T ss_pred HH---cCCCcEEEEcCCCcC----------CCCCeec---CccHHHHHh-----h----ccCcCCCCCCCHHHHHHHHH
Confidence 64 699999999997542 1356665 663221100 1 13589987776654444333
No 119
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.11 E-value=1.2e-05 Score=81.26 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|||||+|+||++|+..|...| .+|++.+|+... ...+.+++....+.+++..++|+|+|++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 57999999999999999999988 689999998643 25556777655577889999999999987 32 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 250 EFTIKQMR---PGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 250 ~~~l~~MK---~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
.+.++.+| ++.+||.++-| |..+.|.+.|.+.++
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 45666666 79999999999 888999888764443
No 120
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.11 E-value=8.2e-06 Score=76.57 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=68.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCce---e-----------------------cCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLT---R-----------------------VYT 223 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~---~-----------------------~~s 223 (501)
..+...+|.|+|.|+.|+..++.|+++|++|..+|.+.... .....+.. . ...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 45788999999999999999999999999999999764311 11111111 1 113
Q ss_pred HHHHHhcCCEEEEecc-CchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 224 LQDLLFQSDCVSLHCT-LNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 224 LdelL~~sDvVil~lP-lt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|.+.++.+|+|+.++- .....-.+|.++.++.||+++++||++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6778999999997554 355677899999999999999999996
No 121
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.08 E-value=2.1e-05 Score=65.84 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=56.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhC-CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAF-GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+++++++|+|+|.+|+.+++.+..+ +.+|.+||+ |+|+.+.+. .+.+.+
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCC----CCCchH
Confidence 37899999999999999999999998 678999987 999988763 355666
Q ss_pred HHHhcCCCCcEEEEcC
Q psy7383 251 FTIKQMRPGAFLVNTA 266 (501)
Q Consensus 251 ~~l~~MK~gAilINva 266 (501)
+.++.|+++.++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 6788999999999874
No 122
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.03 E-value=3.9e-05 Score=73.07 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=73.0
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc------hhhh-------------------hcCceecCCHHHHHhcC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD------GIEK-------------------SLGLTRVYTLQDLLFQS 231 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~------~~~~-------------------~~gv~~~~sLdelL~~s 231 (501)
+|+|||.|.||+.+|..+...|++|..||++... ...+ ...+....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999987531 0000 01133456788888 99
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
|+|+=++|.+-+.+.-+-++.-+.++++++|...+.+ +....|.+.+.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~ 127 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS 127 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC
Confidence 9999999988888887778888889999998776655 66666776664
No 123
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.00 E-value=2.3e-05 Score=76.45 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=62.7
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh-------cCc--e-ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS-------LGL--T-RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~-------~gv--~-~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+||| .|.||+.+++.|...|.+|++|+|+.... .... .++ . ...+..+.+.++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 99999999999999999999999875321 1110 111 1 1236678899999999999944
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
....++ ++.-..++ +.++|++.-|-
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCc
Confidence 233333 22223344 58999998773
No 124
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.00 E-value=1.4e-05 Score=85.62 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=73.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch--hhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
.+.+++|+|||+|.||+.+++.|+.+| .+|+++|++.... ..+..+...+ .++.+++.++|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 488999999999999999999999999 7899999986432 3334443222 356678899999999865 4567
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCCccCH
Q psy7383 247 LINEFTIKQMR----PGAFLVNTARGGLVDD 273 (501)
Q Consensus 247 lI~~~~l~~MK----~gAilINvaRG~vVde 273 (501)
+++.+.++.+. ...++||.+...=||.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 88888887652 2458888886443443
No 125
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.97 E-value=3.4e-05 Score=75.37 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=66.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh---hhhcCce-ecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKSLGLT-RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~~gv~-~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++++|+|.|+||+.+|+++...|++|++-+++.++.. .+.++.. ...+.++..+.+|+|++.+|... ...+ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhH-HHH
Confidence 5799999999999999999999999999977654322 2222221 12478899999999999999653 2222 255
Q ss_pred HHhcCCCCcEEEEcCCC
Q psy7383 252 TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG 268 (501)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555565 8999998764
No 126
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.94 E-value=2.6e-05 Score=74.80 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=76.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hh---hh----hcCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GI---EK----SLGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~---~~----~~gv~~~~sLdelL~~sDvV 234 (501)
++|+|+|+|.+|..+|..|...|++|++||..... +. .+ ...+....+.++.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 58999999999999999999999999999965321 00 00 11233445678889999999
Q ss_pred EEeccCchhhhh------cc--cHHHHhcCCCCcEEEEcCCCCccCHHHH-HHHHHcCCceEEEEe-cCCCCCCCCCC--
Q psy7383 235 SLHCTLNEHNHH------LI--NEFTIKQMRPGAFLVNTARGGLVDDDSL-AAALKQGRIRAAALD-VHESEPYNVFQ-- 302 (501)
Q Consensus 235 il~lPlt~~T~~------lI--~~~~l~~MK~gAilINvaRG~vVde~aL-~~aL~~g~I~GAaLD-Vfe~EPl~~~~-- 302 (501)
++|+|...+..+ +. -+...+.++++.++|.-|.-.+=..+.+ ...|++..-.+.-++ +|-+|=+.+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999984222222 21 2456677899999999999877555533 344444321100111 25566554311
Q ss_pred CCCCCCCCeEE
Q psy7383 303 GNLKDAPNILC 313 (501)
Q Consensus 303 ~pL~~~pNVil 313 (501)
..+...++||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 23455666664
No 127
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.94 E-value=6.2e-05 Score=75.47 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.++|+|||+|+||+++++.|...+ .+|++++++... .+.....+..+++.+||+|++++|. .+++.++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~- 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL- 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH-
Confidence 468999999999999999998765 359999886432 2334445777888999999999883 34555553
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+....++++ .+|.+.-| ++.+.+.+.+..
T Consensus 76 ~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~~ 104 (260)
T PTZ00431 76 EIKPYLGSK-LLISICGG--LNLKTLEEMVGV 104 (260)
T ss_pred HHHhhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence 333445544 56777666 667777666543
No 128
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=0.0001 Score=75.29 Aligned_cols=125 Identities=20% Similarity=0.230 Sum_probs=88.0
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|.|||-| .+|+.+|.+|...|+.|++++.+. .++.+.+++||+|+.++. ..+++..
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~AvG----~p~~i~~ 216 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCVGVG----KPDLIKA 216 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEEecC----CCCcCCH
Confidence 5899999999999 999999999999999999885321 257889999999999985 4567887
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+.+ |+|+++||++--.+ .+|++.| ||-..+ .. +. --.+||=-+|.-.=+..-+.+
T Consensus 217 ~~v---k~GavVIDvGi~~~----------~~gklvG---Dvd~e~-v~----~~----a~~iTPVPGGVGpvT~a~L~~ 271 (285)
T PRK14191 217 SMV---KKGAVVVDIGINRL----------NDGRLVG---DVDFEN-VA----PK----ASFITPVPGGVGPMTIVSLLE 271 (285)
T ss_pred HHc---CCCcEEEEeecccc----------cCCceec---cccHHH-Hh----hh----ccEEecCCCCChHHHHHHHHH
Confidence 765 99999999996543 1356666 663211 10 01 135899877765544443434
Q ss_pred HHHHHHHH
Q psy7383 331 MAASEIRR 338 (501)
Q Consensus 331 ~~~~ni~~ 338 (501)
.+++..++
T Consensus 272 N~~~a~~~ 279 (285)
T PRK14191 272 NTLIAAEK 279 (285)
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.92 E-value=6.8e-05 Score=75.56 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=78.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCce-----------ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLT-----------RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~-----------~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|+|||.|.||+.+|..|...|.+|.+++++... +.....+.. ...+.+++ ..+|+|+++++.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 36999999999999999999999999999985432 112222321 12345555 8999999999843 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEE--EecCCCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAA--LDVHESEP 297 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAa--LDVfe~EP 297 (501)
+..++ +.....+.+++.+|.+.-| +-.++.+.+.+...++.+.. ..++..+|
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p 132 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP 132 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence 44444 3444556778889988887 33356666666665665433 23344455
No 130
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.92 E-value=5.2e-05 Score=76.68 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=74.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-------------ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-------------RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-------------~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|..|...|.+|.+|+|....+..+..++. ...+.+++...+|+|+++++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 47999999999999999999999999999982111111222211 1234566678999999999843
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
++..++ ++....++++.++|.+.-| +-.++.|.+.+.+.++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 344443 3444556788899988776 344677777776666553
No 131
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.90 E-value=0.00015 Score=71.55 Aligned_cols=152 Identities=21% Similarity=0.140 Sum_probs=102.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCE---EEEECCC----CCch---------hhhhcCceec-CCHHHHHhcCCEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFN---VIFYDPY----LPDG---------IEKSLGLTRV-YTLQDLLFQSDCV 234 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~---Vi~~dr~----~~~~---------~~~~~gv~~~-~sLdelL~~sDvV 234 (501)
.++++++.|+|.|.+|+.+|+.|...|++ |+++||+ .... ..+..+.... .++.+.+.++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 47889999999999999999999999984 9999998 2211 1222211111 2677888999999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCCCCCCCCCCCeEE
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR-IRAAALDVHESEPYNVFQGNLKDAPNILC 313 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~-I~GAaLDVfe~EPl~~~~~pL~~~pNVil 313 (501)
|.+.+ .++++.+.++.|+++.++...+.. ..|.-+.++.+.|- |.. |= .+ --..+.-|+++
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a---~G--~~------~~~~Q~nn~~~ 163 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVA---TG--RS------DFPNQVNNVLG 163 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEE---eC--CC------CCccccceeee
Confidence 98875 588999999999999999998843 34444444444433 232 21 11 12347789999
Q ss_pred ecCCCCC-----cHHHHHHHHHHHHHHHHHHHh
Q psy7383 314 TPHAAFY-----SEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 314 TPHiAg~-----T~ea~~~~~~~~~~ni~~~l~ 341 (501)
-|=++-- ...-.++|...+++.|..+..
T Consensus 164 fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 164 FPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred cchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 9987632 222235666667777766553
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.88 E-value=4.5e-05 Score=78.56 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
+.+++|+|||.|.||+.+++.|+..| .+|+++||+... .....++.... .++.+.+.++|+|+.+++... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999876 579999987643 34455555322 245677889999999988543 2222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCC
Q psy7383 248 INEFTIKQM-RPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~M-K~gAilINvaRG 268 (501)
+ +..++.. +++.+|||++..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 3333333 357788888754
No 133
>KOG2380|consensus
Probab=97.87 E-value=2.2e-05 Score=81.21 Aligned_cols=108 Identities=17% Similarity=0.263 Sum_probs=85.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhcccHHHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
-++|||||||++|+-+|..+...|+.|+++||..-.......|......+.++++ .+|+|++|+.. ..+..++-.--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 4689999999999999999999999999999987556666778777778888875 68999998752 234555544456
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+++|.|++|+++-.-.....+++.+-|-+.
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkd 160 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKD 160 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccc
Confidence 779999999999887766777777766553
No 134
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.86 E-value=5.8e-05 Score=79.05 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCc------hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPD------GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~------~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|..+|.+|...|++|++||++... ......|+....+..+++.+||+|++++|....++.++ .+....+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 689999999999999999987531 12334677766788899999999999999665477777 46778899999
Q ss_pred EEEEcCCCCccCH-HHHHHHHH
Q psy7383 261 FLVNTARGGLVDD-DSLAAALK 281 (501)
Q Consensus 261 ilINvaRG~vVde-~aL~~aL~ 281 (501)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999876655 56666664
No 135
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.85 E-value=4e-05 Score=78.36 Aligned_cols=94 Identities=26% Similarity=0.354 Sum_probs=74.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
-|.||||+|||||.=|.+=|..|+-.|.+|++--|.-.. ..+++.|++ +.+.+|+.+++|+|.+.+|..- ...++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~-q~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQ-QKEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhh-HHHHHH
Confidence 389999999999999999999999999998876555432 345567776 5699999999999999999543 355666
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG 268 (501)
++.-..||.|+.| -.+.|
T Consensus 93 ~~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 93 KEIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred HHhhhhhcCCceE-Eeccc
Confidence 6888889999854 44554
No 136
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.85 E-value=3.7e-05 Score=82.47 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=69.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcCcee--cCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLGLTR--VYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~gv~~--~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
.+.+++|+|||.|.||+.+++.|+..|+ +|++++++... .....++... ..++.+.+.++|+|+.+++. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999998 79999997543 2344444322 23456678899999998763 356
Q ss_pred cccHHHHhcC-----CCCcEEEEcCCC
Q psy7383 247 LINEFTIKQM-----RPGAFLVNTARG 268 (501)
Q Consensus 247 lI~~~~l~~M-----K~gAilINvaRG 268 (501)
++..+.++.+ +...++||++-.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 6777777654 345788888754
No 137
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=8.4e-05 Score=75.96 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=87.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||.+. +|+.+|.+|...|+.|++++.+. .++++.++++|+|+.++.- .++|..
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvi~avG~----p~~v~~ 218 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHHVRNADLLVVAVGK----PGFIPG 218 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHHHhhCCEEEEcCCC----cccccH
Confidence 58999999999999 99999999999999999987531 2688999999999999842 246665
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+.+|+|+++||++--.+. +|++.| ||-.++=. .. --.+||=-+|...-+..-+.+
T Consensus 219 ---~~vk~gavVIDvGin~~~----------~gk~~G---Dvd~~~~~-----~~----a~~itPvPGGVGp~T~a~L~~ 273 (285)
T PRK10792 219 ---EWIKPGAIVIDVGINRLE----------DGKLVG---DVEFETAA-----ER----ASWITPVPGGVGPMTVATLLE 273 (285)
T ss_pred ---HHcCCCcEEEEccccccc----------CCCcCC---CcCHHHHH-----hh----ccCcCCCCCCChHHHHHHHHH
Confidence 457999999999954321 245554 55211100 01 246888878877655554444
Q ss_pred HHHHHHH
Q psy7383 331 MAASEIR 337 (501)
Q Consensus 331 ~~~~ni~ 337 (501)
.+++..+
T Consensus 274 N~~~a~~ 280 (285)
T PRK10792 274 NTLQACE 280 (285)
T ss_pred HHHHHHH
Confidence 4444333
No 138
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.80 E-value=5.8e-05 Score=71.04 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=76.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.++.+|...|+.|..++.+. .++++.+++||+|+.++. ..++|..
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~~~~ADIVVsa~G----~~~~i~~ 95 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEITRRADIVVSAVG----KPNLIKA 95 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHHHTTSSEEEE-SS----STT-B-G
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------CcccceeeeccEEeeeec----ccccccc
Confidence 59999999999996 99999999999999999887432 368899999999999986 3566765
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+ .+|+|+++||++.-.+ -.++++.| ||...+ . ...--.+||=-+|.-.-+. .
T Consensus 96 ~---~ik~gavVIDvG~~~~---------~~~~~~~G---Dv~~~~-~--------~~~a~~itPvPgGVGplT~----a 147 (160)
T PF02882_consen 96 D---WIKPGAVVIDVGINYV---------PGDGKLVG---DVDFES-V--------KEKASAITPVPGGVGPLTV----A 147 (160)
T ss_dssp G---GS-TTEEEEE--CEEE---------TTTTEEEE---SB-HHH-H--------HTTCSEEE-SSSSCHHHHH----H
T ss_pred c---cccCCcEEEecCCccc---------cccceeee---cccHHH-h--------hccceEEeeCCCCccHHHH----H
Confidence 4 5699999999988654 33455554 664211 1 1112367997676655332 3
Q ss_pred HHHHHHHH
Q psy7383 331 MAASEIRR 338 (501)
Q Consensus 331 ~~~~ni~~ 338 (501)
+.++|+.+
T Consensus 148 ~L~~N~v~ 155 (160)
T PF02882_consen 148 MLMKNLVK 155 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455443
No 139
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.80 E-value=6e-05 Score=78.64 Aligned_cols=86 Identities=24% Similarity=0.207 Sum_probs=62.9
Q ss_pred EEeeccchHHHHHHHHHHh-CCCEEEEECCCCCc---hhhhhcC------------------ceecCCHHHHHhcCCEEE
Q psy7383 178 LGIVGLGRIGSAVALRAKA-FGFNVIFYDPYLPD---GIEKSLG------------------LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~a-fG~~Vi~~dr~~~~---~~~~~~g------------------v~~~~sLdelL~~sDvVi 235 (501)
|||+|||+||+.+++.+.. -+++|++.+....+ ..+..++ +....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999864 46888775432221 1122122 222336899999999999
Q ss_pred EeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 236 l~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
.|.| .+.++.+++.+.+|+.+++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 8865 668899999999999999998653
No 140
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00025 Score=72.49 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=83.8
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|+.++.+ ..++.+.+++||+|+.++. ..++|+.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~-------------t~~l~~~~~~ADIvI~AvG----~p~~i~~ 217 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK-------------TKNLAELTKQADILIVAVG----KPKLITA 217 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC-------------chhHHHHHHhCCEEEEecC----CCCcCCH
Confidence 58999999999876 6999999999999999988632 1268899999999999985 3468888
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+.+ |+|+++||++.-.+. +|++.| ||-..+= .. ---.+||.-+|.-.-+..
T Consensus 218 ~~i---k~gavVIDvGi~~~~----------~gkl~G---Dvd~e~v--------~~-~a~~iTPVPGGVGpvT~a 268 (284)
T PRK14190 218 DMV---KEGAVVIDVGVNRLE----------NGKLCG---DVDFDNV--------KE-KASYITPVPGGVGPMTIT 268 (284)
T ss_pred HHc---CCCCEEEEeeccccC----------CCCeec---cCcHHHH--------hh-hceEecCCCCCChHHHHH
Confidence 775 899999999976532 356666 7632111 01 124799987776554433
No 141
>PLN00203 glutamyl-tRNA reductase
Probab=97.77 E-value=4.8e-05 Score=83.77 Aligned_cols=95 Identities=9% Similarity=0.170 Sum_probs=70.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc-Cc--e--ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL-GL--T--RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~-gv--~--~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+.... +...+ +. . ...++.+++.++|+|+.+++ .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 3789999999999999999999999997 699999986432 22222 22 1 22356678999999999865 4
Q ss_pred hhhcccHHHHhcCCCC-------cEEEEcCCCC
Q psy7383 244 NHHLINEFTIKQMRPG-------AFLVNTARGG 269 (501)
Q Consensus 244 T~~lI~~~~l~~MK~g-------AilINvaRG~ 269 (501)
...+|.++.++.|+++ -+|||.+=..
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 5678888888887432 4788887554
No 142
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=0.0001 Score=76.05 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=63.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCc--hhhhh---cC--ceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPD--GIEKS---LG--LTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~--~~~~~---~g--v~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
...++|+|||+|.+|+.+++.+.. ++ .+|.+|||+... .+... .+ +..+.++++++.+||+|+++.+.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 356899999999999999986654 45 689999998643 22222 13 445568899999999997776643
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-+|.. +.+|+|+++.-++.
T Consensus 201 -~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 -EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred -CCEecH---HHcCCCCEEEeeCC
Confidence 566665 34699995444443
No 143
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00011 Score=75.00 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=65.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||.|. .|+.+|..|...|++|++++++ ..++.+.++++|+||.+++ . .++|..
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------t~~L~~~~~~aDIvI~AtG-~---~~~v~~ 218 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------TQNLPELVKQADIIVGAVG-K---PELIKK 218 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------chhHHHHhccCCEEEEccC-C---CCcCCH
Confidence 58999999999998 9999999999999999999862 1257788899999999996 2 236776
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+. +|+|+++||++-..
T Consensus 219 ~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 219 DW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HH---cCCCCEEEEEEEee
Confidence 54 79999999998543
No 144
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=8.9e-05 Score=75.59 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++|++|.|||.+ ..|+.+|.+|..+|+.|..++.+. .++.+.+++||+|+.+++.. +++.+
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~Avgk~----~lv~~ 211 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVSAAGKA----GFITP 211 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEECCCcc----cccCH
Confidence 5899999999999 999999999999999999887431 26889999999999999622 77888
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+.+ |+|+++||++-..
T Consensus 212 ~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 212 DMV---KPGATVIDVGINQ 227 (279)
T ss_pred HHc---CCCcEEEEeeccc
Confidence 774 9999999998654
No 145
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.72 E-value=0.00022 Score=69.20 Aligned_cols=90 Identities=22% Similarity=0.192 Sum_probs=64.9
Q ss_pred ccccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhh--hcCceec--CC----HHHHHhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEK--SLGLTRV--YT----LQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~--~~gv~~~--~s----LdelL~~sDvVil~lPlt 241 (501)
.+++||++.|||-+.| |+.+|.+|...|+.|+.+|.+......+ ...-... .+ +.+.+++||+||.+++-
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~- 136 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS- 136 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC-
Confidence 4699999999999875 8999999999999999997432100000 0000000 12 77899999999999983
Q ss_pred hhhhhc-ccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHL-INEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~l-I~~~~l~~MK~gAilINvaR 267 (501)
.++ |..+. .|+|+++||++-
T Consensus 137 ---~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 137 ---PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred ---CCCccCHHH---cCCCcEEEEcCC
Confidence 355 77655 589999999984
No 146
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00012 Score=74.96 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||.+. +|+.+|..|...|+.|++++.+ ..++.+.+++||+|+.++-- .++|..
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvv~AvG~----p~~i~~ 223 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF-------------TDDLKKYTLDADILVVATGV----KHLIKA 223 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc-------------CCCHHHHHhhCCEEEEccCC----ccccCH
Confidence 58999999999999 9999999999999999998742 12688899999999997652 357766
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+ .+|+|+++||++--.+ .|++.| ||-..+- .. .--.+||=-+|.-.-+..
T Consensus 224 ~---~vk~gavVIDvGin~~-----------~gkl~G---Dvd~~~~--------~~-~a~~iTPVPGGVGp~T~a 273 (287)
T PRK14176 224 D---MVKEGAVIFDVGITKE-----------EDKVYG---DVDFENV--------IK-KASLITPVPGGVGPLTIA 273 (287)
T ss_pred H---HcCCCcEEEEeccccc-----------CCCccC---CcCHHHH--------Hh-hceEcCCCCCCChHHHHH
Confidence 5 5789999999986421 356665 5531111 00 124689987776654433
No 147
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.72 E-value=0.00033 Score=64.59 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=65.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||+|.|+|-+. +|+.+|.+|...|++|..++.+. .++++.+++||+|+.++... ++|+.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvsAtg~~----~~i~~ 87 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVVGSPKP----EKVPT 87 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCCC----CccCH
Confidence 58999999999875 58999999999999999987532 26888999999999998743 66876
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+. +|+|+++||++...
T Consensus 88 ~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 88 EW---IKPGATVINCSPTK 103 (140)
T ss_pred HH---cCCCCEEEEcCCCc
Confidence 55 78999999998754
No 148
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.69 E-value=6.1e-05 Score=77.38 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=75.5
Q ss_pred ccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCce--ec----CCHHHHHhcCCEEEEeccC
Q psy7383 169 GCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLT--RV----YTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 169 g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~--~~----~sLdelL~~sDvVil~lPl 240 (501)
|...+...+|.|||.|-+|..-|+.+..+|.+|...|.+.++ .....++.+ .. ..+++.+.++|+||-.+--
T Consensus 162 GvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 162 GVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 344577788999999999999999999999999999987432 222223322 11 2468889999999987643
Q ss_pred -chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 -NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 -t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
..+.-.++.++.+++||||+++||++
T Consensus 242 pgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred cCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 33456788899999999999999995
No 149
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.67 E-value=0.0001 Score=74.71 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=62.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch--hhhhcC----ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IEKSLG----LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~~~~g----v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+.++++.|+|.|.+|+.++..|..+| .+|++++|+.... ...... +....++.+.+.++|+||.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 378899999999999999999999999 7899999985432 222221 111013456778999999999964321
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
..-...-.+..++++.+++++.-
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeec
Confidence 10000111234566777777754
No 150
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00078 Score=68.87 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=85.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.+..+. .++.+.+++||+|+.++. -.++|+.
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG----~p~~i~~ 215 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQLTKEADILVVAVG----VPHFIGA 215 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhhCCEEEEccC----CcCccCH
Confidence 58999999999886 59999999999999999886431 268899999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. +|+|+++||++--.+. +|++.| ||-.++=.. .--.+||=-+|.-.-+..-+.+
T Consensus 216 ~~---vk~GavVIDvGin~~~----------~gkl~G---DVd~~~v~~---------~a~~iTPVPGGVGp~T~a~L~~ 270 (282)
T PRK14169 216 DA---VKPGAVVIDVGISRGA----------DGKLLG---DVDEAAVAP---------IASAITPVPGGVGPMTIASLMA 270 (282)
T ss_pred HH---cCCCcEEEEeeccccC----------CCCeee---cCcHHHHHh---------hccEecCCCCCcHHHHHHHHHH
Confidence 64 6899999999864431 356666 764222111 1137899777765544333333
Q ss_pred HH
Q psy7383 331 MA 332 (501)
Q Consensus 331 ~~ 332 (501)
-+
T Consensus 271 N~ 272 (282)
T PRK14169 271 QT 272 (282)
T ss_pred HH
Confidence 33
No 151
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.61 E-value=0.0011 Score=72.46 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=88.3
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCc--------------hhhh---h-cC--ceecCCHHHHHhcCCE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPD--------------GIEK---S-LG--LTRVYTLQDLLFQSDC 233 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~--------------~~~~---~-~g--v~~~~sLdelL~~sDv 233 (501)
++|+|||+|.+|..+|..|... |++|++||..... .... . .+ .....+.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999866 6899999965421 0000 0 01 2333456778999999
Q ss_pred EEEeccCch-----------hhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe-cCCCCCCC
Q psy7383 234 VSLHCTLNE-----------HNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD-VHESEPYN 299 (501)
Q Consensus 234 Vil~lPlt~-----------~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD-Vfe~EPl~ 299 (501)
+++|+|.-. +...+. -++.-+.++++.++|.-|.-.+=..+.+...|.+.. .|.-.. +|-.|=+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 999996211 222332 245666789999999998877766677777777531 110011 25666664
Q ss_pred CC--CCCCCCCCCeEE
Q psy7383 300 VF--QGNLKDAPNILC 313 (501)
Q Consensus 300 ~~--~~pL~~~pNVil 313 (501)
+. -+.+...|+||+
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 41 235666677764
No 152
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0012 Score=69.96 Aligned_cols=155 Identities=15% Similarity=0.236 Sum_probs=116.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhh----cCceecCCHHHH---HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKS----LGLTRVYTLQDL---LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~----~gv~~~~sLdel---L~~sDvVil~lPlt~~T~~ 246 (501)
..||+||+|-||+.+|......|++|.+|||+..+ +..+. ..+...++++|+ |+.---|++++-...-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46899999999999999999999999999998753 22222 134456688887 5677788888875422233
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+| ++++..|-+|-++|+-+....-|+..-.++|.+..|...+.-|.-.|--.. ..|-+ +-|-+.++++
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~-~GPSi----------MpGG~~eay~ 151 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGAR-HGPSI----------MPGGQKEAYE 151 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccc-cCCCc----------CCCCCHHHHH
Confidence 44 578899999999999999999999999999999999988888987664211 12221 3467888888
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy7383 327 ELREMAASEIRRAIVGR 343 (501)
Q Consensus 327 ~~~~~~~~ni~~~l~G~ 343 (501)
.+..+ ++.|.+-..|+
T Consensus 152 ~v~pi-l~~IaAk~~g~ 167 (473)
T COG0362 152 LVAPI-LTKIAAKVDGE 167 (473)
T ss_pred HHHHH-HHHHHhhcCCC
Confidence 77654 55666666666
No 153
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.58 E-value=0.00031 Score=70.80 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=74.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhc---CceecCCHHHH-HhcCCEEEEeccCc--hhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSL---GLTRVYTLQDL-LFQSDCVSLHCTLN--EHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~---gv~~~~sLdel-L~~sDvVil~lPlt--~~T 244 (501)
..++++.|+|.|.+|+.++..|...|++|.++||+..+ ...+.. +.....++++. +.++|+|+.++|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999999999999987532 111111 21122244443 45899999999964 222
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 245 HH-LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 245 ~~-lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.. .++ +..++++.+++|+.-... ++ .|++..++..+.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G~~ 232 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCe
Confidence 11 222 345788999999977654 33 577777766554
No 154
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.57 E-value=0.001 Score=68.53 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.++.+ ..++++.+++||+|+.++.- .++|..
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv~AvGk----~~~i~~ 226 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVIAAAGQ----AMMIKG 226 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCC----cCccCH
Confidence 58999999999986 5999999999999999998643 12688999999999999863 378877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
+. .|+|+++||++--.+-+. ...+| ++.| ||-.++=. ..--.+||=-+|.-.=+..-+.
T Consensus 227 ~~---vk~gavVIDvGin~~~~~-----~~~~g~kl~G---Dvd~e~v~---------~~a~~iTPVPGGVGp~T~a~L~ 286 (299)
T PLN02516 227 DW---IKPGAAVIDVGTNAVSDP-----SKKSGYRLVG---DVDFAEVS---------KVAGWITPVPGGVGPMTVAMLL 286 (299)
T ss_pred HH---cCCCCEEEEeeccccCcc-----cccCCCceEc---CcChHHhh---------hhceEecCCCCCchHHHHHHHH
Confidence 55 689999999986442221 11123 4544 76422111 0113589987776655544444
Q ss_pred HHHHHHHHHHH
Q psy7383 330 EMAASEIRRAI 340 (501)
Q Consensus 330 ~~~~~ni~~~l 340 (501)
+-+++..++++
T Consensus 287 ~N~v~a~~~~~ 297 (299)
T PLN02516 287 KNTVDGAKRVF 297 (299)
T ss_pred HHHHHHHHHHh
Confidence 44554445544
No 155
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.56 E-value=0.0003 Score=74.38 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=67.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-------CEEEEECCCCCc-------hhh-------------hhcCceecCCHHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-------FNVIFYDPYLPD-------GIE-------------KSLGLTRVYTLQD 226 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-------~~Vi~~dr~~~~-------~~~-------------~~~gv~~~~sLde 226 (501)
..++|+|||.|..|.++|..|...| .+|..|.++... ... ...++....++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4468999999999999999998665 899999876421 010 0112344568889
Q ss_pred HHhcCCEEEEeccCchhhhhcccHHHHh--cCCCCcEEEEcCCCCccC
Q psy7383 227 LLFQSDCVSLHCTLNEHNHHLINEFTIK--QMRPGAFLVNTARGGLVD 272 (501)
Q Consensus 227 lL~~sDvVil~lPlt~~T~~lI~~~~l~--~MK~gAilINvaRG~vVd 272 (501)
+++++|+|++++|.. ..+.++ ++.-. .+++++++|+++-|=-.+
T Consensus 90 av~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 90 AVEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 999999999999932 233333 22223 466788999998884433
No 156
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.55 E-value=0.00048 Score=70.74 Aligned_cols=111 Identities=21% Similarity=0.212 Sum_probs=76.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee-------------cCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR-------------VYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~-------------~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|.+|...|++|.++.|... +.....|+.. +.+..+.+..+|+|+++++..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 6899999999999999999999999999988652 2222222110 111223467899999999854
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEE
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAAL 290 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaL 290 (501)
++...+ +.....+++++++|...-| +-.++.|.+.+...++.++..
T Consensus 84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 333333 3344556788899988777 446677777887777766543
No 157
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.54 E-value=0.00026 Score=73.48 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=66.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCch--hhh---hcC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPDG--IEK---SLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~~--~~~---~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
-++|||||+|.+|+..++.+... ..+|.+||++.... ... ..+ +..+.+.++++++||+|++++|. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 47899999999999877776542 35899999986532 111 234 34567899999999999999874 35
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
-++..+. +|+|+.++.++.-.
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGADA 225 (325)
T ss_pred cEecHHH---cCCCCEEEecCCCC
Confidence 6776554 59999999998543
No 158
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.0014 Score=67.15 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=89.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++.+++||+|+.++. ..+++..
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~~~~ADIvIsAvG----kp~~i~~ 214 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAVTRRADVLVVAVG----RPHLITP 214 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecC----CcCccCH
Confidence 58999999999875 69999999999999999886432 268899999999999986 3478877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC--ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR--IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~--I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
+. .|+|+++||++--.+.++ .|+ +.| ||- .+-.. . --.+||=-+|.-.-+..-+
T Consensus 215 ~~---vk~GavVIDVGin~~~~~--------~gk~~l~G---DVd-~~v~~-----~----a~~iTPVPGGVGp~T~a~L 270 (287)
T PRK14173 215 EM---VRPGAVVVDVGINRVGGN--------GGRDILTG---DVH-PEVAE-----V----AGALTPVPGGVGPMTVAML 270 (287)
T ss_pred HH---cCCCCEEEEccCccccCC--------CCceeeec---ccc-HhHHh-----h----CcEEecCCCChhHHHHHHH
Confidence 66 589999999997654321 345 655 665 22110 1 1268998777655444434
Q ss_pred HHHHHHHHHHHHhC
Q psy7383 329 REMAASEIRRAIVG 342 (501)
Q Consensus 329 ~~~~~~ni~~~l~G 342 (501)
.+-+++..++...|
T Consensus 271 ~~N~~~a~~~~~~~ 284 (287)
T PRK14173 271 MANTVIAALRRRGG 284 (287)
T ss_pred HHHHHHHHHHHccC
Confidence 34344333443333
No 159
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.51 E-value=0.00039 Score=72.94 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=66.1
Q ss_pred eEEeeccchHHHHHHHHHHhCC--------CEEEEECCCC---Cchh----h------h-------hcCceecCCHHHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG--------FNVIFYDPYL---PDGI----E------K-------SLGLTRVYTLQDLL 228 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG--------~~Vi~~dr~~---~~~~----~------~-------~~gv~~~~sLdelL 228 (501)
+|+|||.|..|.++|..|...| .+|..|.+.. .... . + ..++....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 9999998732 1110 0 0 11233446899999
Q ss_pred hcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 229 FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 229 ~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
.++|+|++++|.. ..+.++ .+.-..++++.++|+++-|=-
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence 9999999999932 333333 344456788999999999843
No 160
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00064 Score=69.54 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=88.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.+..+. .++.+.+++||+|+.++.- .++|..
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~----~~~i~~ 216 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT-------------KDLPQVAKEADILVVATGL----AKFVKK 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCC----cCccCH
Confidence 59999999999986 58999999999999999886421 2588999999999999873 467776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. .|+|+++||++--.+ .+|++.| ||-.++-. .. --.+||=-+|.-.=+..-+.+
T Consensus 217 ~~---vk~GavVIDvGin~~----------~~gkl~G---Dvdfe~~~-----~~----a~~iTPVPGGVGpvT~a~L~~ 271 (284)
T PRK14170 217 DY---IKPGAIVIDVGMDRD----------ENNKLCG---DVDFDDVV-----EE----AGFITPVPGGVGPMTITMLLA 271 (284)
T ss_pred HH---cCCCCEEEEccCccc----------CCCCeec---ccchHHHH-----hh----ccEecCCCCChHHHHHHHHHH
Confidence 55 689999999986543 1467766 66321110 01 137899877765544444444
Q ss_pred HHHHHHHHHH
Q psy7383 331 MAASEIRRAI 340 (501)
Q Consensus 331 ~~~~ni~~~l 340 (501)
-+++..++.+
T Consensus 272 N~~~a~~~~~ 281 (284)
T PRK14170 272 NTLKAAKRIW 281 (284)
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 161
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.49 E-value=0.0016 Score=66.66 Aligned_cols=112 Identities=16% Similarity=0.279 Sum_probs=82.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHh--CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKA--FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~a--fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
++.||++.|||-+. +|+.+|.+|.. .++.|+++..+ ..++.+.+++||+|+.++.- .++|
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~~k~ADIvV~AvGk----p~~i 217 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAHTRRADIIVAAAGV----AHLV 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHHHHhCCEEEEecCC----cCcc
Confidence 58999999999875 69999999987 79999988643 13688999999999999873 3678
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
..+. +|+|+++||++--.+ .+|++.| ||- .+=.. .- -.+||--+|.-.=+..
T Consensus 218 ~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~v~~-----~a----~~iTPVPGGVGp~T~a 269 (284)
T PRK14193 218 TADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PDVWE-----VA----GAVSPNPGGVGPMTRA 269 (284)
T ss_pred CHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-HhHHh-----hC----CEEeCCCCChhHHHHH
Confidence 7755 689999999997653 3456766 765 22111 11 2689997776554333
No 162
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00046 Score=70.49 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=81.0
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+ .+|+.+|.+|...|+.|+.+..+. .++.+.+++||+|+.++. ..++|..
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-------------~~l~~~~~~ADIvV~AvG----kp~~i~~ 216 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-------------KDLKAHTKKADIVIVGVG----KPNLITE 216 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecC----cccccCH
Confidence 5899999999999 889999999999999999876321 257889999999999986 3467776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~e 323 (501)
+. .|+|+++||++--.+. +|++.| ||-.++=.. . --.+||=-+|.-.=
T Consensus 217 ~~---vk~gavvIDvGin~~~----------~gkl~G---DVd~~~~~~-----~----a~~iTPVPGGVGpv 264 (281)
T PRK14183 217 DM---VKEGAIVIDIGINRTE----------DGRLVG---DVDFENVAK-----K----CSYITPVPGGVGPM 264 (281)
T ss_pred HH---cCCCcEEEEeeccccC----------CCCeEC---CccHHHHHh-----h----ceEecCCCCCChHH
Confidence 55 5799999999854321 256665 764322111 1 13589987776543
No 163
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.47 E-value=0.00031 Score=66.97 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=63.4
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCch--hhhhc----Cc--ee--cC---CHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSL----GL--TR--VY---TLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~----gv--~~--~~---sLdelL~~sDvVil~ 237 (501)
.++++++.|+|. |.+|+.+++.|...|.+|++++|+.... ..... +. .. .. ++.++++++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 478999999995 9999999999999999999999875321 11111 11 11 11 234678899999888
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVd 272 (501)
.|.... ..+. .-...+++.+++|+.+..-++
T Consensus 105 t~~g~~--~~~~--~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 105 GAAGVE--LLEK--LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCCCce--echh--hhcccCceeEEEEccCCCCCC
Confidence 875432 1111 112345577888887765443
No 164
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.47 E-value=0.00032 Score=72.88 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=70.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---------------hhhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---------------GIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---------------~~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++|.|||.|..|.++|+.|...|.+|..|.++... +.....++....+++++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 57999999999999999999999999999875321 111112344456899999999999999993
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
...+.++ ++.-..+++++.+|+++-|=-.+.-
T Consensus 82 -~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~ 113 (329)
T COG0240 82 -QALREVL-RQLKPLLLKDAIIVSATKGLEPETG 113 (329)
T ss_pred -HHHHHHH-HHHhhhccCCCeEEEEeccccCCCc
Confidence 2233333 2222467899999999998544433
No 165
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0014 Score=69.55 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=92.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hh------hhhcC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GI------EKSLG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~------~~~~g-v~~~~sLdelL~~sDvV 234 (501)
.+|||||+|-||..+|..+...|++|++||.+... +. ..+.| ++...+.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 78999999999999999999999999999965321 00 01112 23333343 35599999
Q ss_pred EEeccC--ch----hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC--CceEEEEecC---CCCCCCCC
Q psy7383 235 SLHCTL--NE----HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG--RIRAAALDVH---ESEPYNVF 301 (501)
Q Consensus 235 il~lPl--t~----~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g--~I~GAaLDVf---e~EPl~~~ 301 (501)
++|+|. +. +...+.+ +.....||+|.++|==|.-..=.++.++.-|.+. .+. +.-|+| ..|-..+
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P- 166 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP- 166 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC-
Confidence 999992 21 2222332 3466779999999988887776777777666653 233 235653 4454333
Q ss_pred CCCC---CCCCCeEEecCCCCCcHHHHHH
Q psy7383 302 QGNL---KDAPNILCTPHAAFYSEASCTE 327 (501)
Q Consensus 302 ~~pL---~~~pNVilTPHiAg~T~ea~~~ 327 (501)
.+.+ -+.|+| +||.|+++.+.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHH
Confidence 3333 344555 46666655443
No 166
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.46 E-value=0.00099 Score=76.22 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=83.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh-----h------hhc-------------CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI-----E------KSL-------------GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-----~------~~~-------------gv~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|+.||++... +. . .+. .++...++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999987431 00 0 001 12333455 44799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
||+|+=++|.+-+.+.-+-++.-+.++++++|.....+ +....|.+.++.. =.-+++-.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRP-ENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCC-ccEEEEecC
Confidence 99999999999999888888888899999998665554 6667777777542 222355544
No 167
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00077 Score=69.08 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=85.9
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|+.+..+ ..+|.+.+++||+|+.++. -.++|..
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~~~~ADIvV~AvG----kp~~i~~ 218 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSITSKADIVVAAIG----SPLKLTA 218 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccC----CCCccCH
Confidence 58999999999986 5999999999999999988632 1368899999999999987 2467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. .|+|+++||++--.+ .+|++.| ||-.++=.. . =-.+||=-+|.-.=+..-+.+
T Consensus 219 ~~---vk~GavVIDvGin~~----------~~gkl~G---DVd~~~v~~-----~----a~~iTPVPGGVGp~T~a~L~~ 273 (288)
T PRK14171 219 EY---FNPESIVIDVGINRI----------SGNKIIG---DVDFENVKS-----K----VKYITPVPGGIGPMTIAFLLK 273 (288)
T ss_pred HH---cCCCCEEEEeecccc----------CCCCeEC---CccHHHHHh-----h----ceEeCCCCCCcHHHHHHHHHH
Confidence 55 689999999985432 2456665 663221110 1 137899878766544443333
Q ss_pred HHHHH
Q psy7383 331 MAASE 335 (501)
Q Consensus 331 ~~~~n 335 (501)
-+++.
T Consensus 274 N~v~a 278 (288)
T PRK14171 274 NTVKA 278 (288)
T ss_pred HHHHH
Confidence 33333
No 168
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.43 E-value=0.00059 Score=68.46 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=73.2
Q ss_pred HHHHHHhCC--CEEEEECCCCCc-hhhhhcCcee-cCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFG--FNVIFYDPYLPD-GIEKSLGLTR-VYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG--~~Vi~~dr~~~~-~~~~~~gv~~-~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
+|+.|+..| .+|++||++... ......|+.. ..+-.+.++++|+|++|+|.. .+..++ ++....++++++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577888777 899999988643 2233456532 222257899999999999954 344444 5566779999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEec---CCCCCC--CCCCCCCCCCCCeEEecCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDV---HESEPY--NVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDV---fe~EPl--~~~~~pL~~~pNVilTPHiA 318 (501)
+.-+.--.+++.+.+. .... ++=+ |-.|-- ...+..|++-.++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~-~~~~--~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP-EGVR--FVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHT-SSGE--EEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcC-cccc--eeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 8866555555555555 2222 1112 222211 11135788888999999865
No 169
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.41 E-value=0.0005 Score=72.05 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=70.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHh-CC-CEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKA-FG-FNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~a-fG-~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++++++|.|+|. |.||+.+++.|.. .| .+++.++|+... ....++......++++.+.++|+|+.+.- ....
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts---~~~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVAS---MPKG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc---CCcC
Confidence 589999999998 8999999999974 56 489999986432 12223321223468899999999886653 2234
Q ss_pred -cccHHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 247 -LINEFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 247 -lI~~~~l~~MK~gAilINvaRG~vVde 273 (501)
+|+.+. |+++.++||+++..=||.
T Consensus 229 ~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 229 VEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 377764 489999999999876664
No 170
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.41 E-value=0.00098 Score=68.61 Aligned_cols=119 Identities=23% Similarity=0.228 Sum_probs=85.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.+..+ ..++++.+++||+|+.++.- .++|..
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvIsAvGk----p~~i~~ 217 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASITREADILVAAAGR----PNLIGA 217 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCC----cCccCH
Confidence 58999999999876 5999999999999999988642 12688999999999999873 367876
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
+. .|+|+++||++--.+.|.. ++|++.| ||-.++=.. . --.+||--+|.-.=+..-+
T Consensus 218 ~~---ik~gavVIDvGin~~~~~~------~~gkl~G---Dvd~~~v~~-----~----a~~iTPVPGGVGp~T~a~L 274 (297)
T PRK14186 218 EM---VKPGAVVVDVGIHRLPSSD------GKTRLCG---DVDFEEVEP-----V----AAAITPVPGGVGPMTVTML 274 (297)
T ss_pred HH---cCCCCEEEEeccccccccc------cCCceeC---CccHHHHHh-----h----ceEecCCCCCchHHHHHHH
Confidence 55 6899999999976543221 1466665 664222110 1 1379999777655443333
No 171
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.41 E-value=0.00052 Score=68.00 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=70.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC--------C-chhh---hhcC-------ceecCCHHHHH-hc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL--------P-DGIE---KSLG-------LTRVYTLQDLL-FQ 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~--------~-~~~~---~~~g-------v~~~~sLdelL-~~ 230 (501)
++.+++|.|.|||++|+.+|+.|..+|++|++ .|... + .... +..+ ...+ +.++++ .+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 48999999999999999999999999999994 44321 1 1111 1111 1112 234433 37
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|||++-|.+ .+.|+.+...+++ =.+++--+-+.+ . ..-.+.|+++.|.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 899987754 5778888888887 345555555555 4 5556778887776
No 172
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.38 E-value=0.00034 Score=72.05 Aligned_cols=90 Identities=17% Similarity=0.054 Sum_probs=67.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhhhc---Ccee-cCCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEKSL---GLTR-VYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~~~---gv~~-~~sLdelL~~sDvVil~lPlt~~T 244 (501)
...++|+|||.|.+|+..++.+.. ++. +|.+|||+.... ..... ++.. +.+.++++.++|+|+.++|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 456899999999999999999864 664 699999986431 22221 2222 357899999999999998744
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
.-+|.. .+|+|+.++.++.-.
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCC
Confidence 467754 269999999998543
No 173
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.37 E-value=0.0011 Score=67.55 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=81.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.++.+ ..++.+..++||+|+.++.- .++|..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------T~~l~~~~~~ADIvIsAvGk----p~~i~~ 217 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------TKNLKEVCKKADILVVAIGR----PKFIDE 217 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCC----cCccCH
Confidence 58999999999876 5999999999999999998742 12688999999999999873 467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~e 323 (501)
+. .|+|+++||++--.+ .|++.| ||-.++-. +. --.+||--+|.-.=
T Consensus 218 ~~---ik~gavVIDvGin~~-----------~gkl~G---Dvd~~~v~-----~~----a~~iTPVPGGVGp~ 264 (278)
T PRK14172 218 EY---VKEGAIVIDVGTSSV-----------NGKITG---DVNFDKVI-----DK----ASYITPVPGGVGSL 264 (278)
T ss_pred HH---cCCCcEEEEeecccc-----------CCceee---eccHHHHH-----hh----ccEecCCCCCccHH
Confidence 65 689999999975432 256766 77321110 01 13689997776553
No 174
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.37 E-value=0.0031 Score=63.70 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=92.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC----Cch-----h-----hh-hc------------CceecCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL----PDG-----I-----EK-SL------------GLTRVYT 223 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~----~~~-----~-----~~-~~------------gv~~~~s 223 (501)
+++|+||.|.|||++|+.+|+.|..+|++|++ .|.+- +.+ + .+ .. +.+.+ +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 58999999999999999999999999999994 34210 000 0 00 01 12333 3
Q ss_pred HHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 224 LQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 224 LdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
.++++ .+|||++-| .+.+.|+++...+++ .=.+++-.+-+.+-. +-.+.|.++.|. .+=|+.-+----.
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGVi 185 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGVA 185 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCee
Confidence 44543 489999877 468899999888885 345667777777644 345677777765 2334332211000
Q ss_pred CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-|--..| .-|.-|.-++..+++.+.+.+...+.+
T Consensus 186 -vs~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 186 -VSGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred -eeHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000011 223344456666666666655555544
No 175
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.36 E-value=0.00082 Score=68.76 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=64.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...|+.|+.++.+. .++.+.+++||+|+.++. ..++|..
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~~~~ADIvIsAvG----k~~~i~~ 218 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSIVRQADIIVGAVG----KPEFIKA 218 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEeCC----CcCccCH
Confidence 58999999999876 59999999999999999987431 268899999999999987 3467776
Q ss_pred HHHhcCCCCcEEEEcCCC
Q psy7383 251 FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG 268 (501)
+. .|+|+++||++--
T Consensus 219 ~~---ik~gavVIDvGin 233 (284)
T PRK14177 219 DW---ISEGAVLLDAGYN 233 (284)
T ss_pred HH---cCCCCEEEEecCc
Confidence 55 6899999999854
No 176
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00082 Score=68.72 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=82.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++..++||+|+.++. -.++|..
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~~~~ADIvIsAvG----kp~~i~~ 216 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAG----CVNLLRS 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCC----CcCccCH
Confidence 58999999999986 59999999999999999887432 268899999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+. .|+|+++||++--.+ .+|++.| ||-..+=. ..--.+||=-+|.-.=+..
T Consensus 217 ~~---vk~GavVIDvGin~~----------~~gkl~G---DVd~~~v~---------~~a~~iTPVPGGVGp~T~a 267 (282)
T PRK14166 217 DM---VKEGVIVVDVGINRL----------ESGKIVG---DVDFEEVS---------KKSSYITPVPGGVGPMTIA 267 (282)
T ss_pred HH---cCCCCEEEEeccccc----------CCCCeeC---CCCHHHHH---------hhccEecCCCCCchHHHHH
Confidence 64 689999999985432 1356665 66422110 0113689987776554333
No 177
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.35 E-value=0.0008 Score=69.26 Aligned_cols=90 Identities=13% Similarity=0.291 Sum_probs=62.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhh-----h--------cCceecCCHHHHH-hcCCEEEEeccC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEK-----S--------LGLTRVYTLQDLL-FQSDCVSLHCTL 240 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~-----~--------~gv~~~~sLdelL-~~sDvVil~lPl 240 (501)
+|+|||.|.||..+|..|...|.+|..|+|+... ...+ . .++....++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 6999999999999999999999999999986421 0111 0 1122334666766 589999999984
Q ss_pred chhhhhcccHHHHh-cCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEFTIK-QMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~~l~-~MK~gAilINvaRG 268 (501)
. ++..++ ++... .+++++.+|.+.-|
T Consensus 82 ~-~~~~~l-~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 82 Q-QLRTIC-QQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred H-HHHHHH-HHHHHhcCCCCCEEEEEEcC
Confidence 3 344444 23333 56778878878777
No 178
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.33 E-value=0.00081 Score=68.13 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=65.7
Q ss_pred CeEEeeccchHHHHHHHHHHhC---CCEEE-EECCCCCchhhhhcCceecCCHHHH-HhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF---GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDL-LFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af---G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdel-L~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.||||||||.||+.+++.+..- ++++. +|++...........+..+.+++++ ..+.|+|+=|... ..+-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~-----~av~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ-----QAIAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH-----HHHHH
Confidence 5899999999999999998653 35544 4555532221112225556789997 5789999988652 22222
Q ss_pred HHHhcCCCCcEEEEcCCCCccC---HHHHHHHHHc
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVD---DDSLAAALKQ 282 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVd---e~aL~~aL~~ 282 (501)
-..+.|+.|.-+|=+|=|.+.| ++.|.++.++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 2334456677777778888887 3455555555
No 179
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.32 E-value=0.00054 Score=71.29 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEE-ECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIF-YDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~-~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|+|||+|+||+.+++.+... ++++.+ ||++.........++....+.++++.+.|+|++|+|.... -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999999765 789775 7877422222233444445677888999999999885322 14455
Q ss_pred hcCCCCcEEEEcCCCC--ccC-HHHHHHHHHc-CCce
Q psy7383 254 KQMRPGAFLVNTARGG--LVD-DDSLAAALKQ-GRIR 286 (501)
Q Consensus 254 ~~MK~gAilINvaRG~--vVd-e~aL~~aL~~-g~I~ 286 (501)
..|+.|.-+|+..--. +-+ .+.|.++.++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 5677777777774321 122 3344555554 5654
No 180
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.00057 Score=71.29 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hh------hhc--------CceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IE------KSL--------GLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~------~~~--------gv~~~~sLdelL~~sDvVil~lP 239 (501)
++|+|||.|.+|..+|..|...| +|..|.++.... .. +.. .+....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 67999999999999999999998 677787653210 00 001 12334577888999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
. ..++.++ ++....+++++++|++.-|
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKG 113 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeC
Confidence 3 3444444 3444567888899999887
No 181
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.31 E-value=0.0019 Score=65.81 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=84.9
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|+||++.|||-++| |+.|+..|...++.|.++..+. .++.+.++++|+|+.++- -.++|..
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~~k~ADIvv~AvG----~p~~i~~ 215 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASITKNADIVVVAVG----KPHFIKA 215 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHHhhhCCEEEEecC----Ccccccc
Confidence 589999999999986 7999999999999999987432 368889999999999975 3467765
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+ ..|+|+++|+++--.+-+ +++.| ||-..+- ....-.+||--||.-.-+..
T Consensus 216 d---~vk~gavVIDVGinrv~~----------~kl~G---DVdf~~v---------~~~a~~iTPVPGGVGPmTva 266 (283)
T COG0190 216 D---MVKPGAVVIDVGINRVND----------GKLVG---DVDFDSV---------KEKASAITPVPGGVGPMTVA 266 (283)
T ss_pred c---cccCCCEEEecCCccccC----------CceEe---eccHHHH---------HHhhcccCCCCCccCHHHHH
Confidence 3 478999999998755433 67766 7743331 12224689988887664433
No 182
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.001 Score=68.31 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=65.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.++.+. .++.+.+++||+|+.++. ..++|..
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~~~~ADIvVsAvG----kp~~i~~ 219 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADYCSKADILVAAVG----IPNFVKY 219 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccC----CcCccCH
Confidence 58999999999886 59999999999999999887432 268899999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+. .|+|+++||++--.
T Consensus 220 ~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 220 SW---IKKGAIVIDVGINS 235 (294)
T ss_pred HH---cCCCCEEEEecccc
Confidence 65 57999999998644
No 183
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.29 E-value=0.0022 Score=73.15 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=82.0
Q ss_pred CeEEeeccchHHHHHHHHHH-hCCCEEEEECCCCCc---hh-------h--hh-------------cCceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPD---GI-------E--KS-------------LGLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~---~~-------~--~~-------------~gv~~~~sLdelL~ 229 (501)
++|+|||.|.||..+|..+. ..|++|+.||++... .. . .+ ..+....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999987 489999999987421 00 0 00 112333455 4579
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
+||+|+=++|.+.+.+.-+-++.-+.++++++|.....+ +....|.+.++. .=.-+++--|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecC
Confidence 999999999999998888888888889999988655554 666667777643 2223455544
No 184
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.29 E-value=0.00087 Score=65.08 Aligned_cols=94 Identities=17% Similarity=0.345 Sum_probs=69.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh------hhcC-------------------cee--
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE------KSLG-------------------LTR-- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~------~~~g-------------------v~~-- 220 (501)
..|..++|+|||+|.+|..+|..|...|. +++.+|+..-+ .+. ...| ++.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35899999999999999999999999999 69999876100 000 0000 111
Q ss_pred --c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 221 --V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 221 --~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
. .++++++.++|+|+.+ ..+.+++.++..+....++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 0 1345678899999988 588899999988888888877777643
No 185
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.29 E-value=0.0046 Score=70.72 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=83.5
Q ss_pred CeEEeeccchHHHHHHHHHH-hCCCEEEEECCCCCc-hh-----hh------h-------------cCceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPD-GI-----EK------S-------------LGLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~-~~-----~~------~-------------~gv~~~~sLdelL~ 229 (501)
++|+|||.|.||..||..+. ..|++|..||++... +. .+ + ..+....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 789999999986421 00 00 0 012333455 4579
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
+||+|+=++|.+.+.+.-+-++.-+.++++++|.....+ +....|.+.+... =..+++-.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecC
Confidence 999999999999888888888888889999999766555 6777777776532 223455555
No 186
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.28 E-value=0.00068 Score=67.03 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=65.2
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCE-EEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFN-VIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~-Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||||.||+.+.+.++.- .++ |++||+..++. .++..+...+.+++|++++.|+|+=|.. .+... +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~Av~---e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEAVR---E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHHHH---H
Confidence 3799999999999999999742 444 78899886543 3334444445689999999999988754 22222 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~ 274 (501)
-..+.||.|-=+|=+|-|.+.|+.
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChH
Confidence 234445666666777778877655
No 187
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.28 E-value=0.00096 Score=69.81 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=83.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|..+..+. .++++..++|||||.++. -.++|..
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~~~~ADIvIsAvG----kp~~v~~ 273 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQITRKADIVIAAAG----IPNLVRG 273 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHHhhCCEEEEccC----CcCccCH
Confidence 59999999999987 59999999999999999886432 257889999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+. .|+|+++||++--.+.+.. -+.| ++.| ||..++=... --.+||=-+|.-.-+..
T Consensus 274 d~---vk~GavVIDVGin~~~~~~-----~~~g~klvG---DVdfe~v~~~---------as~iTPVPGGVGpmTva 330 (345)
T PLN02897 274 SW---LKPGAVVIDVGTTPVEDSS-----CEFGYRLVG---DVCYEEALGV---------ASAITPVPGGVGPMTIT 330 (345)
T ss_pred HH---cCCCCEEEEcccccccccc-----ccCCCeeEe---cccHHHHHhh---------ccccCCCCCchhHHHHH
Confidence 55 6899999999865422110 0124 5665 8764332111 13688987776554333
No 188
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.28 E-value=0.0011 Score=67.76 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.++.+. .++.+.+++||+|+.++.- .++|..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~~k~ADIvIsAvGk----p~~i~~ 217 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGK----PNFITA 217 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHhhhcCEEEEccCC----cCcCCH
Confidence 58999999999876 69999999999999999887431 2688889999999999873 467776
Q ss_pred HHHhcCCCCcEEEEcCCC
Q psy7383 251 FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG 268 (501)
+. .|+|+++||++--
T Consensus 218 ~~---vk~gavVIDvGin 232 (282)
T PRK14180 218 DM---VKEGAVVIDVGIN 232 (282)
T ss_pred HH---cCCCcEEEEeccc
Confidence 54 6899999999853
No 189
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.27 E-value=0.001 Score=69.98 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=83.7
Q ss_pred ccccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.+++||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++.+++|||||.++. ..++|.
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-------------~nl~~~~r~ADIVIsAvG----kp~~i~ 289 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITREADIIISAVG----QPNMVR 289 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-------------CCHHHHHhhCCEEEEcCC----CcCcCC
Confidence 368999999999886 58999999999999999886431 368899999999999986 346787
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
.+. .|+|+++||++--.+.+.. =++| ++.| ||-.++-.. . --.+||=-+|.-.=+..
T Consensus 290 ~d~---vK~GAvVIDVGIn~~~~~~-----~~~g~klvG---DVdfe~v~~-----~----as~ITPVPGGVGpmTva 347 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINPVEDAS-----SPRGYRLVG---DVCYEEACK-----V----ASAVTPVPGGVGPMTIA 347 (364)
T ss_pred HHH---cCCCCEEEecccccccccc-----ccCCCeEEe---cCcHHHHHh-----h----ccccCCCCCchHHHHHH
Confidence 765 6899999999864432110 0123 5655 775333211 1 13689988876554333
No 190
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.27 E-value=0.0022 Score=73.34 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=78.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---h---h------hhc-------------CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---I---E------KSL-------------GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~---~------~~~-------------gv~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|+.||++...- . . .+. .++...++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 579999999999999999999999999999874310 0 0 000 12223345 34799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
||+|+=+++.+-+.+.-+-++.-+.++++++|-....+ ++...|.+.++.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~ 442 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR 442 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 99999999998888888878888899999998665554 667777777654
No 191
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.27 E-value=0.00078 Score=72.18 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=71.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+|+++++.|||.|.||.-+|+.|...| .+|++.+|+..+ .+++.++...+ .++.+.+.++|+||.+.. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 489999999999999999999999999 579999998754 34666775543 345566999999999854 4456
Q ss_pred cccHHHHhcC---CCCcEEEEcCCCCccCH
Q psy7383 247 LINEFTIKQM---RPGAFLVNTARGGLVDD 273 (501)
Q Consensus 247 lI~~~~l~~M---K~gAilINvaRG~vVde 273 (501)
+|..+.+... ++.-++||.+=..-|+.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 6655544432 11257888875544443
No 192
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.26 E-value=0.00076 Score=72.45 Aligned_cols=91 Identities=11% Similarity=0.196 Sum_probs=64.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcC-ce--ecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLG-LT--RVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~g-v~--~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.+.|++|.|||.|.||+.+++.|...|. +|++++|+... .+...++ .. ...++.+++.++|+||.+.+. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 5889999999999999999999999995 79999998643 2333333 22 223456779999999998763 34
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.+|..+.+. .+.-+|||.+=
T Consensus 255 ~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCC
Confidence 566655542 12345666654
No 193
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.0013 Score=67.49 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=80.9
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||++.|||-+. +|+.+|.+|... ++.|+.+..+. .++.+.+++||+|+.++.- .+
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T-------------~~l~~~~~~ADIvV~AvG~----p~ 212 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS-------------ENLTEILKTADIIIAAIGV----PL 212 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCC----cC
Confidence 58999999999886 599999999887 78999876421 2688999999999999863 36
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+|..+. .|+|+++||++--.+.+.. .+| ++.| ||-.++-... --.+||=-+|.-.=+
T Consensus 213 ~i~~~~---ik~GavVIDvGin~~~~~~------~~g~kl~G---DVd~e~~~~~---------a~~iTPVPGGVGp~T 270 (287)
T PRK14181 213 FIKEEM---IAEKAVIVDVGTSRVPAAN------PKGYILVG---DVDFNNVVPK---------CRAITPVPGGVGPMT 270 (287)
T ss_pred ccCHHH---cCCCCEEEEeccccccccc------CCCCeeEe---ccchHHHHhh---------cccccCCCCchHHHH
Confidence 787765 6899999999865432211 123 4554 7743221111 125788877765543
No 194
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.0013 Score=67.24 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=82.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++.+++||+|+.++.- .++|..
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~~~~ADIvI~AvGk----~~~i~~ 216 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGEVGRADILVAAIGK----AELVKG 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCC----cCccCH
Confidence 58999999999886 59999999999999999886431 2688899999999999872 567877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+. .|+|+++||++--.+. +|++.| ||-.++-.. . --.+||=-+|.-.=+..
T Consensus 217 ~~---ik~gaiVIDvGin~~~----------~gkl~G---DVd~~~v~~-----~----a~~iTPVPGGVGp~T~a 267 (282)
T PRK14182 217 AW---VKEGAVVIDVGMNRLA----------DGKLVG---DVEFAAAAA-----R----ASAITPVPGGVGPMTRA 267 (282)
T ss_pred HH---cCCCCEEEEeeceecC----------CCCeeC---CCCHHHHHh-----h----ccEecCCCCCChHHHHH
Confidence 65 6899999999865432 356665 764222111 0 13689987776554433
No 195
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.24 E-value=0.005 Score=60.68 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=68.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC-------C--chh--h-hhcCceec-----CCHHHHH-hcCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL-------P--DGI--E-KSLGLTRV-----YTLQDLL-FQSD 232 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~-------~--~~~--~-~~~gv~~~-----~sLdelL-~~sD 232 (501)
+|.|++|.|.|||++|+.+|+.|..+|.+|++ .|.+. + +-. . ...++..+ .+-++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 48999999999999999999999999997655 55433 0 100 0 11111111 0123442 3899
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+++-|.. .+.|+.+....++ =.+++--+.+.+-+ + -.+.|+++.|.
T Consensus 100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERGIV 145 (217)
T ss_pred EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCCcE
Confidence 9988765 5688888888887 44555566666544 3 45666666554
No 196
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.24 E-value=0.0041 Score=71.44 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=83.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh-----h------hh-------------cCceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI-----E------KS-------------LGLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-----~------~~-------------~gv~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|+.||+.... +. . .+ ..+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999977531 00 0 00 0122334554 5799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+|+=+++.+-+.+.-+-++.-+.++++++|.....+ ++...|.+.++.- =.-.++..|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccC
Confidence 99999999999898888888888999999988644333 6777777776542 2334666553
No 197
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.23 E-value=0.0011 Score=57.79 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhh----cCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKS----LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~----~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
...+++.|+..|++|.+|||......... .+++...++++.++.+|+|++++... +-+.+--.+....|+++.+|
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~i 97 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPVI 97 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEEE
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCEE
Confidence 46899999999999999999986544433 46777778999999999999998744 33333335566779899999
Q ss_pred EEc
Q psy7383 263 VNT 265 (501)
Q Consensus 263 INv 265 (501)
|++
T Consensus 98 iD~ 100 (106)
T PF03720_consen 98 IDG 100 (106)
T ss_dssp EES
T ss_pred EEC
Confidence 998
No 198
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.20 E-value=0.00095 Score=69.85 Aligned_cols=88 Identities=26% Similarity=0.303 Sum_probs=63.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCC------HHHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYT------LQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~s------LdelL~~sDvVil~lPlt~~T~~ 246 (501)
.|++|+|+|+|.+|....+.++++|++|+++|++.++ +.++++|.+.+.+ ++++-..+|+|+.+++ . .|-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~~- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-ATL- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hhH-
Confidence 4899999999999999999999999999999998754 5566676543321 2223333888888777 3 222
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
...++.||++..++-++=
T Consensus 243 ---~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred ---HHHHHHHhcCCEEEEECC
Confidence 345667777777766644
No 199
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0012 Score=67.75 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=64.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHh----CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKA----FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~a----fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||++.|||-+. +|+.+|.+|.. .+++|..+..+. .++.+.+++||+|+.++. ..+
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~ADIVI~AvG----~p~ 216 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREADFLFVAIG----RPR 216 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecC----CCC
Confidence 58999999999986 58999999988 789998876321 268899999999999985 457
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG 268 (501)
+|..+.+ |+|+++||++--
T Consensus 217 li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 217 FVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred cCCHHHc---CCCCEEEEeeee
Confidence 7888776 999999999843
No 200
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.18 E-value=0.0014 Score=67.54 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=64.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHh----CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKA----FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~a----fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||+|.|||-+. +|+.+|.+|.. .++.|..+..+. .++++.+++||+|+.++.. .+
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~ADIvI~Avg~----~~ 218 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQADILIAAIGK----AR 218 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCc----cC
Confidence 58999999999886 59999999977 588888776321 2588999999999999852 27
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+|..+.+ |+|+++||++--.
T Consensus 219 li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 219 FITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred ccCHHHc---CCCCEEEEeeccc
Confidence 8888876 9999999998544
No 201
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.18 E-value=0.00025 Score=61.42 Aligned_cols=88 Identities=23% Similarity=0.230 Sum_probs=58.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|+|++|.|||.|.+|..-++.|...|++|+++++.. ........... ..+++.+.++|+|+++.... + ++++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-~~~~~~i~~~~-~~~~~~l~~~~lV~~at~d~-~----~n~~ 76 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-EFSEGLIQLIR-REFEEDLDGADLVFAATDDP-E----LNEA 76 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-HHHHTSCEEEE-SS-GGGCTTESEEEE-SS-H-H----HHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-hhhhhHHHHHh-hhHHHHHhhheEEEecCCCH-H----HHHH
Confidence 4899999999999999999999999999999999875 11111111111 24556688899998776532 2 4455
Q ss_pred HHhcCCCCcEEEEcC
Q psy7383 252 TIKQMRPGAFLVNTA 266 (501)
Q Consensus 252 ~l~~MK~gAilINva 266 (501)
....++.--++||++
T Consensus 77 i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 77 IYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHTTSEEEET
T ss_pred HHHHHhhCCEEEEEC
Confidence 555566566777774
No 202
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.15 E-value=0.0014 Score=67.47 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=73.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhhh-----------c--CceecCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEKS-----------L--GLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~~-----------~--gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.||..+|..+...|. +|+.+|.......... . .+....++++ +++||+|++++...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 579999999999999999988776 8999998543211110 0 1222246666 79999999998731
Q ss_pred h-----------hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHcCCceEEE--Ee
Q psy7383 242 E-----------HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAA--LKQGRIRAAA--LD 291 (501)
Q Consensus 242 ~-----------~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~a--L~~g~I~GAa--LD 291 (501)
. .+..++. .+.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 1 1112221 123344457899999987533444444444 5556677765 67
No 203
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.14 E-value=0.0013 Score=68.16 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=65.0
Q ss_pred cCCeEEeeccchHHHHHHHHHH-hCCC-EEEEECCCCCch--hhh----hcCc--eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAK-AFGF-NVIFYDPYLPDG--IEK----SLGL--TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~-afG~-~Vi~~dr~~~~~--~~~----~~gv--~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||.|.+|+..++.+. ..+. +|.+|||+.... ..+ ..++ ..+.++++++.++|+|+++.|.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999998887764 4554 699999986432 211 1233 34567899999999999998854
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-+|. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999999764
No 204
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.14 E-value=0.0017 Score=70.99 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=51.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecCCHHHH--HhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVYTLQDL--LFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~sLdel--L~~sDvVil~lPlt 241 (501)
.++++++++|+|.|.+|++++..|...|++|+++||+.... .....+... .+++++ +.++|+|++++|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-FPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-echhHhcccCCCCEEEEcCCCC
Confidence 35789999999999999999999999999999999875321 222222221 133333 57899999999965
No 205
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.12 E-value=0.0016 Score=68.31 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=62.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.+++|.|||.|.||+.+++.|...|. +|++.+|+... ..++-... ..-+++.++||||.+...|....-++..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~---~~~~~~~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT---LPYRTVVR-EELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc---cchhhhhh-hhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 5899999999999999999999999995 69999998632 11110000 1114567999999874334344455666
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+.++..++ -+|||.+=..
T Consensus 247 ~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred HHHhhccC-cEEEEecCCC
Confidence 66555433 2777776443
No 206
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.12 E-value=0.002 Score=66.90 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=65.6
Q ss_pred cCCeEEeeccchHHHHHHHHHH-hCCC-EEEEECCCCCch--hhhh----cCc--eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAK-AFGF-NVIFYDPYLPDG--IEKS----LGL--TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~-afG~-~Vi~~dr~~~~~--~~~~----~gv--~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||.|.+++..++.+. .++. +|.+|+|+..+. .... .++ ..+.++++++.+||+|+.+.|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3578999999999999999997 4774 699999986432 2221 233 33567899999999999998753
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-+|..+. +|+|+.++.++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 46776554 689998887764
No 207
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.11 E-value=0.0017 Score=67.09 Aligned_cols=114 Identities=24% Similarity=0.273 Sum_probs=81.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---h-------hhh--hcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---G-------IEK--SLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---~-------~~~--~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||+.+|..+..-|++|..+|++... . ..+ +.| +....++. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 78999999999999999998877999999987321 0 000 011 11111222 6899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+|+=.++.+-+.++-+-++.=+..|++++|= |||+ +.-.+|.++++ +.=...++=.|.
T Consensus 83 ~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfN 143 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFN 143 (307)
T ss_pred CCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccC
Confidence 999999999998888888788888899999984 4544 66677777773 333334555443
No 208
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.09 E-value=0.0022 Score=65.96 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=63.6
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++.||++.|||-+. +|+.+|.+|... ++.|+++..+. .++.+.+++||+|+.++.- .+
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~~~~ADIvIsAvGk----p~ 216 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKECLEADIIIAALGQ----PE 216 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHHHhhCCEEEEccCC----cC
Confidence 58999999999986 589999999876 78999886321 3688999999999999873 46
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+|..+. .|+|+++||++--.
T Consensus 217 ~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 217 FVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred ccCHHH---cCCCCEEEEecCcc
Confidence 777644 68999999998654
No 209
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.09 E-value=0.00082 Score=60.99 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee--------------cCCHHHHHhcCCEEEEeccCchh
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR--------------VYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~--------------~~sLdelL~~sDvVil~lPlt~~ 243 (501)
|.|+|.|.||..+|.+|+..|.+|..+++....+..++.|+.. ..+..+.....|+|++++... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 6899999999999999999999999999876112222223221 111124677899999998744 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+...+.. ....+++++.+|-.--| +-.++.|.+.+...++.++...
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~~ 125 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVTT 125 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEEe
Confidence 4555543 55667777788888777 4456777777766677655543
No 210
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.09 E-value=0.0012 Score=57.44 Aligned_cols=106 Identities=23% Similarity=0.340 Sum_probs=69.1
Q ss_pred eEEeeccchHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~ 249 (501)
+|||||+|.+|+...+.+... +++|. ++|+.... ...+..++..+.++++++. +.|+|+++.|...... +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 699999999999999888766 56654 67887533 2345678887789999998 7899999998533222 22
Q ss_pred HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
...++.=+ .+|+.-= --.+-+.+.|+++.++.+..
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 33333322 4555421 11334555666666665543
No 211
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.09 E-value=0.0019 Score=65.95 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=51.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc----C---ceecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL----G---LTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~----g---v~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.+++|.|||.|.+|++++..|...|+ +|+++||+..+. ....+ . +....++.+.+.++|+||.+.|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 678999999999999999999999998 799999975432 22211 1 111234556778899999998853
No 212
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.07 E-value=0.0069 Score=65.67 Aligned_cols=156 Identities=13% Similarity=0.112 Sum_probs=89.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC---------Cc-hhh-----------------hhcCceecCCH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL---------PD-GIE-----------------KSLGLTRVYTL 224 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~---------~~-~~~-----------------~~~gv~~~~sL 224 (501)
+|.|+||.|.|+|++|+..|+.|..+|++|++..... +. .+. ...+.+.. +.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CC
Confidence 6999999999999999999999999999999843311 00 000 00122322 34
Q ss_pred HHHH-hcCCEEEEeccCchhhhhcccHHHHhcCCC-Cc-EEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC
Q psy7383 225 QDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMRP-GA-FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF 301 (501)
Q Consensus 225 delL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK~-gA-ilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~ 301 (501)
++++ ..|||++-| .+.+.|+++...+++. +. +++--+.+ .+..++.. .|.++.|. .+=|+.-+----.
T Consensus 304 d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~-~L~~rgI~-~~PD~~aNAGGVi- 374 (444)
T PRK14031 304 ARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIK-VFQDAKIL-YAPGKAANAGGVS- 374 (444)
T ss_pred cccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHH-HHHHCCcE-EeChhhccCCCee-
Confidence 4543 479998766 3578999999999875 44 44444555 66666654 44454443 2333322211000
Q ss_pred CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 302 QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 302 ~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-|--..| .-+..|..++..+++.+++.+...+.+
T Consensus 375 vs~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v~ 410 (444)
T PRK14031 375 VSGLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEACV 410 (444)
T ss_pred eehhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000111 223455556666666666555554443
No 213
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.05 E-value=0.0027 Score=65.87 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=72.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCchhh--h--h-----cC----ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDGIE--K--S-----LG----LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~--~--~-----~g----v~~~~sLdelL~~sDvVil~l 238 (501)
+..++|+|||.|.||..+|..+...| .+|..+|........ . . .+ +....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999998888 689999986532111 0 0 11 12123555 779999999998
Q ss_pred --cCch-hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--cCCceEEE--Ee
Q psy7383 239 --TLNE-HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK--QGRIRAAA--LD 291 (501)
Q Consensus 239 --Plt~-~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~--~g~I~GAa--LD 291 (501)
|..+ .++ .++- .+.+....+.+++|+++-..=+-...+.+... ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 4332 111 1110 23444456889999996543233334434322 45666555 55
No 214
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.04 E-value=0.0026 Score=64.29 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=63.1
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEE-ECCCCCch-hhhhc--CceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIF-YDPYLPDG-IEKSL--GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~-~dr~~~~~-~~~~~--gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||+|.||+.+++.+... ++++.+ +++..... ..... ++..+.+++++-.+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4799999999999999999875 566433 34332211 11111 455566888885568999999884321 1 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDD---DSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde---~aL~~aL~~g~I~ 286 (501)
-....++.|.-++-.+-+.+.|. +.|.++.+++...
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 23333445544554544544443 4466666665543
No 215
>PRK06046 alanine dehydrogenase; Validated
Probab=97.01 E-value=0.0018 Score=67.20 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=63.9
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhhh----cC--ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEKS----LG--LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~~----~g--v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++|||||+|.+|+..++.+.. .+. +|.+|||+.... ..+. .+ +..+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998864 454 577899986431 1111 23 334568899987 99999998853
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-+|..+. +|+|+.+..++.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 57777654 5899999989853
No 216
>KOG2653|consensus
Probab=96.97 E-value=0.011 Score=61.95 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=114.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---hhh-hcC--ceecCCHHHH---HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---IEK-SLG--LTRVYTLQDL---LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~~~-~~g--v~~~~sLdel---L~~sDvVil~lPlt~~T~~ 246 (501)
..||+||++-|||.++-.....|+.|.+|+|..++- ++. ..+ +....+++|+ ++.--+|++.+....-...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 468999999999999999999999999999987531 111 112 3334588887 4567788888776544444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+| +++...|-+|-++|+-+....-|+..-.+.|.+..|...+.-|.-.|--.. ..|-+ +-|-+.+++.
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR-~GPSl----------MpGg~~~Awp 154 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGAR-YGPSL----------MPGGSKEAWP 154 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccc-cCCcc----------CCCCChHHHH
Confidence 55 678899999999999999999999999999999998878888886664322 23322 3467788888
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy7383 327 ELREMAASEIRRAIVGR 343 (501)
Q Consensus 327 ~~~~~~~~ni~~~l~G~ 343 (501)
++..++..-....-.|+
T Consensus 155 ~ik~ifq~iaakv~~~e 171 (487)
T KOG2653|consen 155 HIKDIFQKIAAKVSDGE 171 (487)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88776554433333444
No 217
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.96 E-value=0.0026 Score=61.89 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=46.7
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
.+++|||- |.||+.+++.++..|+.|. +++||+|++|+|.. .+..++ +
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------~~~~DlVilavPv~-~~~~~i-----~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------IKKADHAFLSVPID-AALNYI-----E 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------ECCCCEEEEeCCHH-HHHHHH-----H
Confidence 37899988 9999999999999999885 35899999999954 233333 3
Q ss_pred cCCCCcEEEEcCCCC
Q psy7383 255 QMRPGAFLVNTARGG 269 (501)
Q Consensus 255 ~MK~gAilINvaRG~ 269 (501)
.+. .+++|++.-+
T Consensus 50 ~~~--~~v~Dv~SvK 62 (197)
T PRK06444 50 SYD--NNFVEISSVK 62 (197)
T ss_pred HhC--CeEEeccccC
Confidence 333 3789998744
No 218
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.95 E-value=0.0037 Score=67.81 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=72.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEE-CCCC--------Cch-hh--------------hhcCceecCCHHH
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-DPYL--------PDG-IE--------------KSLGLTRVYTLQD 226 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~-dr~~--------~~~-~~--------------~~~gv~~~~sLde 226 (501)
.+|+|+||.|.|||++|+.+|+.|..+|++|++. |.+- +.+ +. ...+.+.. +.++
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~ 306 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGS 306 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcc
Confidence 3589999999999999999999999999999987 5211 101 00 00011222 3445
Q ss_pred HHh-cCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 227 LLF-QSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 227 lL~-~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++. +|||++-|. +.+.|+.+...+++ .-.+++-.+-+.+ +.+ -.+.|.++.|.
T Consensus 307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 544 799998765 46888888777774 3456677777776 433 45677777765
No 219
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.95 E-value=0.0035 Score=64.57 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=80.5
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||+|.|||-+. +|+.+|.+|... ++.|..+..+. .++.+.+++||+|+.++- -.+
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~~l~~~~~~ADIvIsAvG----kp~ 216 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT-------------DDLAAKTRRADIVVAAAG----VPE 216 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccC----CcC
Confidence 58999999999886 599999999765 89999875321 268899999999999875 246
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASC 325 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~ 325 (501)
+|..+. +|+|+++||++--.+.+.. +.| ++.| ||-.++=.. . --.+||=-+|.-.=+.
T Consensus 217 ~i~~~~---ik~gaiVIDvGin~~~~~~------~~g~kl~G---DVd~e~v~~-----~----a~~iTPVPGGVGpvT~ 275 (297)
T PRK14167 217 LIDGSM---LSEGATVIDVGINRVDADT------EKGYELVG---DVEFESAKE-----K----ASAITPVPGGVGPMTR 275 (297)
T ss_pred ccCHHH---cCCCCEEEEccccccCccc------ccCCceee---cCcHHHHHh-----h----ceEecCCCCCchHHHH
Confidence 787654 6899999999865432110 124 5665 775322111 1 1368998777655433
No 220
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.94 E-value=0.0017 Score=63.17 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=50.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh--hcC-ceec-CCH-HHHHhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK--SLG-LTRV-YTL-QDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~--~~g-v~~~-~sL-delL~~sDvVil~lPlt 241 (501)
.+|+|++|.|||.|.+|...++.|...|++|+++++........ ..+ +... ..+ ++.+.++|+|+.++...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 46999999999999999999999999999999999865433211 111 2111 112 34578899888876543
No 221
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.93 E-value=0.0035 Score=64.56 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=86.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++.||+|.|||-+. +|+.+|.+|... ++.|+.+..+. .++++.+++||+|+.++. -.+
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T-------------~~l~~~~~~ADIvVsAvG----kp~ 220 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS-------------KNLARHCQRADILIVAAG----VPN 220 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------cCHHHHHhhCCEEEEecC----CcC
Confidence 58999999999876 589999999876 78998875331 268889999999999885 346
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC--ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR--IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~--I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+|..+. .|+|+++||++--.+.+. .++|+ +.| ||-.++= .+. --.+||=-+|.-.-+
T Consensus 221 ~i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~~~G---DVdfe~v--------~~~-a~~iTPVPGGVGp~T 279 (297)
T PRK14168 221 LVKPEW---IKPGATVIDVGVNRVGTN------ESTGKAILSG---DVDFDAV--------KEI-AGKITPVPGGVGPMT 279 (297)
T ss_pred ccCHHH---cCCCCEEEecCCCccCcc------ccCCCcceec---cccHHHH--------Hhh-ccEecCCCCCchHHH
Confidence 777655 689999999997543211 12344 544 6542111 010 136899877766544
Q ss_pred HHHHHHHHHHHHHHH
Q psy7383 325 CTELREMAASEIRRA 339 (501)
Q Consensus 325 ~~~~~~~~~~ni~~~ 339 (501)
..-+.+-+++..++|
T Consensus 280 ~a~L~~N~~~a~~~~ 294 (297)
T PRK14168 280 IAMLMRNTLKSAKFH 294 (297)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 222
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.93 E-value=0.0019 Score=56.93 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred eEEeec-cchHHHHHHHHHHhC-CCEEEEE-CCCCC--chhhhhcC-ce-e-cC--CHHHH-HhcCCEEEEeccCchhhh
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAF-GFNVIFY-DPYLP--DGIEKSLG-LT-R-VY--TLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~af-G~~Vi~~-dr~~~--~~~~~~~g-v~-~-~~--sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
+++|+| .|.+|+.+++.+... ++++.++ ++... +......+ +. . .. +.+++ ..++|+|++++|... +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999874 7887766 43321 11111111 11 0 01 11222 258999999999653 33
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.++. ..+..+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 33556799999999984
No 223
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0032 Score=67.02 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=67.5
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CC--CEEEEECCCCCch--hh----hhc-C---ceecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FG--FNVIFYDPYLPDG--IE----KSL-G---LTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG--~~Vi~~dr~~~~~--~~----~~~-g---v~~~~sLdelL~~sDvVil~lPlt 241 (501)
-++++|||.|..++.-++.+.. +. -+|.+|||+.... .. ..+ + +..+.+.++++++||||+.+.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999988876 42 4899999986432 11 122 2 445678999999999999988754
Q ss_pred h---hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 E---HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~---~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
. .+.-+|..+. +|+|+.++.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 3457776654 57999888777644
No 224
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.90 E-value=0.0027 Score=66.00 Aligned_cols=87 Identities=9% Similarity=0.128 Sum_probs=62.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCch--hhh----hcCce--ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPDG--IEK----SLGLT--RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~~--~~~----~~gv~--~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||.|.+|+..+..+.. .+ .+|.+|+|+.... ..+ ..++. ...++++++.++|+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35789999999999998888874 55 4799999986431 212 12332 3468899999999999998753
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
.-+|..+. +|+|+.++.++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 46676544 57888776654
No 225
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.90 E-value=0.003 Score=67.36 Aligned_cols=102 Identities=20% Similarity=0.095 Sum_probs=67.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch-hhhhc----------CceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG-IEKSL----------GLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~-~~~~~----------gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|.|||+|.||+.+|..|..-| .+|++.||+.... ..... .+.....+.+++++.|+|+.++|-.-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 57999999999999999999988 9999999985421 11111 12223356788999999999998442
Q ss_pred hhhcccHHHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 244 NHHLINEFTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 244 T~~lI~~~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
+...+ +.++-|.-.|+++-.+-- ..++-+..++..
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Ag 116 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAG 116 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcC
Confidence 22333 445667777777654332 234444444444
No 226
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.82 E-value=0.002 Score=62.83 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=61.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCceec---CCHHHHHhcCCEEEEeccCchhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLTRV---YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~~~---~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+|.|++|.|||.|.+|..-++.|..+|++|+++++....+.. ....+... .. .+.+..+|+|+.+.. .++
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~-d~~- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATD-DEE- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCC-CHH-
Confidence 3589999999999999999999999999999999987653321 11122211 12 345778888877643 222
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
+|.......+.-.++||+
T Consensus 82 ---ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 ---LNRRVAHAARARGVPVNV 99 (205)
T ss_pred ---HHHHHHHHHHHcCCEEEE
Confidence 344555556666677776
No 227
>PLN02477 glutamate dehydrogenase
Probab=96.81 E-value=0.0047 Score=66.33 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=73.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cc-hhhh---h-------cCceecCCHHHH-Hhc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PD-GIEK---S-------LGLTRVYTLQDL-LFQ 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~-~~~~---~-------~gv~~~~sLdel-L~~ 230 (501)
+|+|+||.|.|||++|+.+|+.|...|++|+ +.|.+- +. .+.+ . .+.+.+ +.+++ ..+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~ 281 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEP 281 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceecc
Confidence 6899999999999999999999999999999 445431 11 1101 0 011222 33443 458
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|||++-|. ..+.|+++...++| -.+++--+-+.+ +.+ -.+.|+++.|.
T Consensus 282 ~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 282 CDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred ccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 99997763 56789999888885 456777788887 433 45778888776
No 228
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.80 E-value=0.02 Score=62.15 Aligned_cols=156 Identities=14% Similarity=0.129 Sum_probs=95.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE--------ECCCC-Cchhh------------------hhc-CceecCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF--------YDPYL-PDGIE------------------KSL-GLTRVYT 223 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~--------~dr~~-~~~~~------------------~~~-gv~~~~s 223 (501)
+|.|+||.|-|+|++|+.+|+.|..+|++|++ ||+.- +.+.. ..+ +.+.+ +
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~ 303 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence 68999999999999999999999999999999 77542 11110 011 33333 3
Q ss_pred HHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 224 LQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 224 LdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
.++++ .+|||++-| .+.+.|+++....+. .-.+++--+-+ .++.++- +.|.++.|. ++=|+.-+----.
T Consensus 304 ~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGGVi 375 (445)
T PRK14030 304 GKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGGVA 375 (445)
T ss_pred CccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCCee
Confidence 34554 469998766 368899988888873 23466666677 5665544 666777665 3444432221000
Q ss_pred CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-| +-+-=.-|.-|..++..+++.+++.+...+.+
T Consensus 376 -vs~~---E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 376 -TSGL---EMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred -eehh---hhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0001 11111245666667777777766666655554
No 229
>KOG0023|consensus
Probab=96.80 E-value=0.0023 Score=66.32 Aligned_cols=90 Identities=24% Similarity=0.285 Sum_probs=57.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC--CchhhhhcCceec-CC------HHHHHhcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL--PDGIEKSLGLTRV-YT------LQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~--~~~~~~~~gv~~~-~s------LdelL~~sDvVil~lPlt~~T 244 (501)
.|++|||+|+|.+|.--.+.+++||++|+++|+.. +++..+.+|.+.+ .+ .+++...-|.++-+++.- +
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999999875 2344455665422 11 123444455555444311 1
Q ss_pred hhcccHHHHhcCCCCcEEEEcC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINva 266 (501)
.+-+ +..+..||.+..+|-++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe
Confidence 2222 34556666666555553
No 230
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.80 E-value=0.011 Score=60.71 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh--------
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH-------- 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~-------- 246 (501)
+++++|||-=.=-..++++|.+.|++|.++.-.. ......|++.+.+.++++.++|+|++-+|.+.+...
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~--~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ--LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc--cccccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 6899999988888999999999999999854221 111233666666778999999999999887544311
Q ss_pred --cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 247 --LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 247 --lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
-++++.+++||++.+++ ++.+ +.. +-+.+++.+|. .+|..
T Consensus 80 ~~~~~~~~l~~l~~~~~v~-~G~~---~~~-~~~~~~~~gi~--~~~~~ 121 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIF-SGIA---NPY-LKELAKETNRK--LVELF 121 (296)
T ss_pred CCcchHHHHHhcCCCCEEE-EecC---CHH-HHHHHHHCCCe--EEEEe
Confidence 13678999999998544 3333 222 44667788887 34544
No 231
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.76 E-value=0.0059 Score=63.40 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=65.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhC-C-CEEEEECCCCCchh--h---hhcC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAF-G-FNVIFYDPYLPDGI--E---KSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~af-G-~~Vi~~dr~~~~~~--~---~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
-++++|+|.|..++.-++.+... . -+|.+|||+..... . +..+ +..+.+.++++++||+|+.+.+ .+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence 47899999999999988887643 2 47999999865321 1 1123 3345689999999999998866 446
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG 268 (501)
-+|+.+. +|+|+.++.++.-
T Consensus 205 P~~~~~~---l~~G~hi~~iGs~ 224 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGAD 224 (315)
T ss_pred ceeCHHH---cCCCcEEEecCCC
Confidence 7777654 6899999999853
No 232
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.74 E-value=0.0068 Score=53.85 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=67.8
Q ss_pred CeEEeec----cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVG----LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVG----lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
|+|+||| -+..|..+.+.|+..|++|+..++...+ -.|...+.+++|.=...|++++++|.. .+..++ +
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v--~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIV--D 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHH--H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHH--H
Confidence 6899999 7899999999999999999999987532 245566678888437899999999843 334444 2
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.+..+..+.+++..+ ..++++.+.+++..|.
T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 334446778888888 6778888888888776
No 233
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.73 E-value=0.0041 Score=62.39 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=73.9
Q ss_pred EEeecc-chHHHHHHHHHHhCC----CEEEEECCCCCc--hhhh----------hcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 178 LGIVGL-GRIGSAVALRAKAFG----FNVIFYDPYLPD--GIEK----------SLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 178 VGIVGl-G~IG~~iA~~L~afG----~~Vi~~dr~~~~--~~~~----------~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
|+|||. |.+|..+|..|...| .+|..||..... .... ...+....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998878 799999976532 1100 01223334567889999999996521
Q ss_pred c-----------hhhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHcCCceEEE-EecC
Q psy7383 241 N-----------EHNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAA--LKQGRIRAAA-LDVH 293 (501)
Q Consensus 241 t-----------~~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~a--L~~g~I~GAa-LDVf 293 (501)
. .++..++. .+.+.+..+++++||++-.-=+-...+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 0 01111221 234444568999999964322233344444 4678888988 8864
No 234
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.68 E-value=0.0033 Score=60.99 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=34.0
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46999999999999999999999999998 79999865
No 235
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.0098 Score=64.34 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=72.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch------hhhhcCceec--CCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG------IEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~------~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T 244 (501)
+.+++|+|+|+|..|+++|+.|+..|++|.++|...... ..+..|+... ....+.+.++|+|++. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 678999999999999999999999999999999764311 1233465432 1234556889999887 532221
Q ss_pred hh-----------cccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 HH-----------LINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 ~~-----------lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.- ++.+ +.+ +..+...+-|--+.|+.-..+-|...|+...
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 11 2221 222 2233345666667788777777777777533
No 236
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0095 Score=63.65 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=94.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC------------------c--hhhhhcCceecCCHHHHHh-c
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP------------------D--GIEKSLGLTRVYTLQDLLF-Q 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~------------------~--~~~~~~gv~~~~sLdelL~-~ 230 (501)
+|+|+||.|=|+|+.|+.+|+.|...|.+|+++|-+.. + ......+.+.+ +-++++. +
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccccc
Confidence 48999999999999999999999999999999875432 0 11112344444 3356654 7
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPN 310 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pN 310 (501)
|||++=| .+.+.|+.+...++|-. +++--+.+.+- .++--..++.|-+. +=|+.-+ .=-
T Consensus 283 cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl~--~PD~laN------------AGG 341 (411)
T COG0334 283 CDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGILV--VPDILAN------------AGG 341 (411)
T ss_pred CcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCEE--cChhhcc------------CcC
Confidence 9998654 47899999999999877 77888888754 44444444555433 3333221 111
Q ss_pred eEEec--------CCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy7383 311 ILCTP--------HAAFYSEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 311 VilTP--------HiAg~T~ea~~~~~~~~~~ni~~~l~ 341 (501)
|+++= -..|..++..+++..++.+..+.+.+
T Consensus 342 V~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~ 380 (411)
T COG0334 342 VIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQ 380 (411)
T ss_pred eeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 12244566677777776666665553
No 237
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.66 E-value=0.0024 Score=66.05 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=55.4
Q ss_pred CeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCc--hhh---hhcC--ceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPD--GIE---KSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~--~~~---~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++++|||.|..++.-++.+.. +.. +|.+|+|+... .+. ...+ +..+.+.++++++||+|+.+.+.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999998888754 554 79999998632 111 1123 345678999999999999987754322 6
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~v 270 (501)
+++.+ .+|+|+.++.++....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66654 5789999999987544
No 238
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.031 Score=59.66 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=83.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC--------------chhh---hh---cC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP--------------DGIE---KS---LG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~--------------~~~~---~~---~g-v~~~~sLdelL~~sDvV 234 (501)
++|.|+|.|-+|...+..|..+|++|+++|.... ++++ ++ .| +....+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5799999999999999999999999999985432 1111 11 11 33445788899999999
Q ss_pred EEeccCchhhhhcc--------cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe-cCCCCCCCC
Q psy7383 235 SLHCTLNEHNHHLI--------NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD-VHESEPYNV 300 (501)
Q Consensus 235 il~lPlt~~T~~lI--------~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD-Vfe~EPl~~ 300 (501)
+++++-...-.+-+ -++..+.++..+++|+=|.-.+=..+.+.+.+.+..-.. -.+ |+.+|=|..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 99998543323322 245667788779999999877666666665555544211 112 255665543
No 239
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.61 E-value=0.0054 Score=62.50 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=49.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcC----ceecC---CHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLG----LTRVY---TLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~g----v~~~~---sLdelL~~sDvVil~lPlt 241 (501)
++++++.|||.|.++++++..|...|+ +|++++|+..+. +...++ +.... ++.+.+.++|+||.++|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 678999999999999999999999997 699999975432 222111 11121 2335567889999988864
No 240
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.61 E-value=0.0099 Score=53.22 Aligned_cols=101 Identities=26% Similarity=0.265 Sum_probs=58.5
Q ss_pred eEEeecc-chHHHHHHHHHHh-CCCEE-EEECCCCCch----hh-----hhcCceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 177 TLGIVGL-GRIGSAVALRAKA-FGFNV-IFYDPYLPDG----IE-----KSLGLTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~a-fG~~V-i~~dr~~~~~----~~-----~~~gv~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
+|+|+|+ |+||+.+++.+.. -++++ -++|+..+.. .. ...++....++++++.++|+|+-.. +++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999988 78884 4567665211 10 1344555678999999999998765 3332
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
..-.-+..+ +.+.-+|-...|---++.+.++.+.+
T Consensus 80 ~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 80 VYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred hHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 222212222 33666666556643333344444333
No 241
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.61 E-value=0.0073 Score=56.49 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=48.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-CCH-HHHHhcCCEEEEecc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-YTL-QDLLFQSDCVSLHCT 239 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-~sL-delL~~sDvVil~lP 239 (501)
.+|+|++|.|||-|.+|...++.|...|++|.++++...++......+... ..+ ++-+.++|+|+.++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC
Confidence 469999999999999999999999999999999987654433221111110 112 223677888877654
No 242
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.59 E-value=0.0076 Score=63.42 Aligned_cols=89 Identities=17% Similarity=0.294 Sum_probs=63.0
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhh---hcC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEK---SLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~---~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
-++++|||.|..++.-++.+.. +.. +|.+|+|+.... ..+ ..+ +..+.++++++++||+|+.+.+.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 3789999999999888776643 444 699999986432 111 112 444578999999999999988632 222
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
-+|..+ .+|+|+.++-++.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456654 4599998888774
No 243
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.54 E-value=0.012 Score=59.20 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=47.0
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEEE-ECCCCCchh-hhhcCceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVIF-YDPYLPDGI-EKSLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi~-~dr~~~~~~-~~~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
.+|+|+|+ |.||+.+++.+... ++++.+ +|+...... ....++....++++++.++|+|+.+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998764 788665 776543211 123345445689999989999997775
No 244
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.54 E-value=0.0095 Score=61.43 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhh----hcC--ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEK----SLG--LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~----~~g--v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++|||.|..|+.-++.+.. +.. +|.+|||+.... +.+ ..+ +..+.++++++.+||+|+.+.+ .+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~---s~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITN---SD 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC---CC
Confidence 4789999999999988888765 343 699999986432 111 123 4455789999999999998876 34
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-+|..+. +|+|+.++-++.-
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs~ 214 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGSN 214 (301)
T ss_pred CcEecHHH---cCCCceEEecCCC
Confidence 57777664 5789887777753
No 245
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.50 E-value=0.004 Score=65.21 Aligned_cols=83 Identities=25% Similarity=0.275 Sum_probs=57.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc------------h---------h-----hhh--cCc--e
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD------------G---------I-----EKS--LGL--T 219 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~------------~---------~-----~~~--~gv--~ 219 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+..-+ . . .++ ..+ +
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 56999999999999999999999999998 78888875310 0 0 000 011 1
Q ss_pred ec------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 220 RV------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 220 ~~------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
.. .+++++++++|+|+.++ .+.+++.+||+-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 11 23567788899888876 567777777754443
No 246
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.49 E-value=0.035 Score=60.40 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=88.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cc-hh---h----------hh-----cCceecC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PD-GI---E----------KS-----LGLTRVY 222 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~-~~---~----------~~-----~gv~~~~ 222 (501)
.+|.|+||.|=|+|++|+.+|+.|..+|++|+ +.|..- +. .+ . .. .+.+.+
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~- 311 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV- 311 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-
Confidence 46999999999999999999999999999999 444330 11 11 0 00 022322
Q ss_pred CHHHHH-hcCCEEEEeccCchhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 223 TLQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQM-RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 223 sLdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~M-K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
+-++++ -.|||++-| .+.+.|+.+..+.+ +.++.+|--+--..+..+| .+.|+++.|. ++=|..-+----.
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA-~~~L~~~GI~-~~PD~~aNAGGV~ 384 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA-THLFKKNGVI-FCPGKAANAGGVA 384 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHCCcE-EEChhhhcCCCee
Confidence 223333 479998766 36888998887766 4455555444433445444 4566666665 2333322211000
Q ss_pred CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-|--..|.. +..|.-++..+++.+++.+...+.+
T Consensus 385 -vS~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 385 -ISGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred -eehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01111112222 4556556666666655544444443
No 247
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.48 E-value=0.0034 Score=62.92 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=91.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEE--------CCCC-C-chhhh---hcC-------------ceecCCHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY--------DPYL-P-DGIEK---SLG-------------LTRVYTLQ 225 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~--------dr~~-~-~~~~~---~~g-------------v~~~~sLd 225 (501)
+++|+||.|-|+|++|+.+|+.|...|++|++. |+.. + +.+.+ ..+ .+.+ +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 489999999999999999999999999998876 4331 0 01111 111 1111 222
Q ss_pred -HHH-hcCCEEEEeccCchhhhhcccHHHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC-
Q psy7383 226 -DLL-FQSDCVSLHCTLNEHNHHLINEFTIK-QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF- 301 (501)
Q Consensus 226 -elL-~~sDvVil~lPlt~~T~~lI~~~~l~-~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~- 301 (501)
+++ .+|||++.|. ..+.|+++... .+|.++-+|--+--..+..++.. .|+++.|. .+=|..-+----..
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~-viPD~~aNaGGvi~s 180 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL-VIPDFLANAGGVIVS 180 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E-EE-HHHHTTHHHHHH
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE-EEcchhhcCCCeEee
Confidence 565 5899999883 46788888888 88767655555444445566665 88888876 34454322100000
Q ss_pred CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 302 QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 302 ~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
...+.. | ..+.-|..++..+++.+.+.++..+.+
T Consensus 181 ~~E~~~--~---~~~~~~~~~~v~~~l~~~m~~~~~~v~ 214 (244)
T PF00208_consen 181 YFEWLQ--N---LQGLFWTEEEVFEKLEEIMDRAFKRVL 214 (244)
T ss_dssp HHHHHH--H---HHTSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc--h---hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000111 1 234455556666666666655555444
No 248
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.45 E-value=0.058 Score=55.86 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC---chh----hhhcC--ceecCCHHHHHhcCCEEEEec----
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP---DGI----EKSLG--LTRVYTLQDLLFQSDCVSLHC---- 238 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~----~~~~g--v~~~~sLdelL~~sDvVil~l---- 238 (501)
+.|++|++||- +++.++++..+..+|++|....|..- ... .+..| +....+++++++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 78899999997 78999999999999999999987531 111 22334 344568999999999998742
Q ss_pred cCch---h-----hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 TLNE---H-----NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 Plt~---~-----T~~lI~~~~l~~MK~gAilINva 266 (501)
.... + ...-++++.++.+|++++|.-+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1000 0 12234566666666666665543
No 249
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.40 E-value=0.024 Score=53.02 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=67.4
Q ss_pred cCCeEEeec--cchHHHHHHHHHHhCCCEEEEECCCC---Cc--hhh-------hhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 174 RGDTLGIVG--LGRIGSAVALRAKAFGFNVIFYDPYL---PD--GIE-------KSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVG--lG~IG~~iA~~L~afG~~Vi~~dr~~---~~--~~~-------~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.|+||++|| .+++.++++..|..||++|.+..|.. .. ... +..| +....+++|.++++|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 378999999 48999999999999999999998764 11 111 1112 34557999999999999876
Q ss_pred ccC----chh-------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 238 CTL----NEH-------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 238 lPl----t~~-------T~~lI~~~~l~~MK~gAilINva 266 (501)
.-- .+. ....++++.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 543 111 11457899999999999998885
No 250
>PRK11579 putative oxidoreductase; Provisional
Probab=96.39 E-value=0.015 Score=60.36 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=45.5
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+. .+..++.. ++++. ++|+..........+...+.+++++++ +.|+|++++|..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 47999999999985 56666554 78876 477664322211123445579999996 579999999853
No 251
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.37 E-value=0.0074 Score=61.66 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=33.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~ 208 (501)
+.+|++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 6789999999999999999999999996 99999875
No 252
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.37 E-value=0.011 Score=60.44 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=64.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh--h----hh---cC----ceecCCHHHHHhcCCEEEEecc--
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI--E----KS---LG----LTRVYTLQDLLFQSDCVSLHCT-- 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~--~----~~---~g----v~~~~sLdelL~~sDvVil~lP-- 239 (501)
++|+|||.|.+|..+|..+...|. +|..+|....... . .. .+ +....+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 589999999999999999988765 9999998543211 1 00 00 1112345 45899999999863
Q ss_pred Cch---------hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHcCCceEEE
Q psy7383 240 LNE---------HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAA--LKQGRIRAAA 289 (501)
Q Consensus 240 lt~---------~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~a--L~~g~I~GAa 289 (501)
..+ ++..++. .+.+...-+.+++|+++-..=+-...+.+. +...++.|.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 211 1112221 122333346678888864432333333332 2224666663
No 253
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.34 E-value=0.014 Score=60.67 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=69.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhh------h---c----CceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEK------S---L----GLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~------~---~----gv~~~~sLdelL~~sDvVil~l 238 (501)
+..++|+|||.|.||..+|..+...|. +|..+|......... . . .+....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 556899999999999999999988884 899999875421100 0 1 12222355 5679999999976
Q ss_pred cCc----------------hhhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--cCCceEEE
Q psy7383 239 TLN----------------EHNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK--QGRIRAAA 289 (501)
Q Consensus 239 Plt----------------~~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~--~g~I~GAa 289 (501)
-.. .++..++. .+.+....+.+++||++-..=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 321 11222221 12334445788999998543222333433322 34566655
No 254
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.34 E-value=0.016 Score=60.71 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--h----hhhcC--ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--I----EKSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~----~~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++|||.|..+..-++.++. |+. +|.+|+|+.... . .+..+ +..+.+.+++++.||+|+.+.|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3689999999999999998865 444 799999986432 1 12233 3567789999999999999988653
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
-+|..+. +|+|+.+..++-
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 7776655 569999999985
No 255
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.34 E-value=0.02 Score=61.15 Aligned_cols=89 Identities=26% Similarity=0.359 Sum_probs=64.0
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
.+.+++|+|+|+ -.-...+++.|...|.+|.+|||.......+.. ..+.++++.++++|+|+++....
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~--~~~~~~~~~~~~ad~~v~~t~~~ 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGL--PLIDDLEEALKGADALVILTDHD 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhc--ccCCCHHHHHhCCCEEEEecCCH
Confidence 378999999998 457789999999999999999998654322222 22468899999999999987643
Q ss_pred hhhhhcccHHHHh-cCCCCcEEEEc
Q psy7383 242 EHNHHLINEFTIK-QMRPGAFLVNT 265 (501)
Q Consensus 242 ~~T~~lI~~~~l~-~MK~gAilINv 265 (501)
+-+. ++-+.+. .|+ ..++||+
T Consensus 388 -~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 -EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred -HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2232 3444444 455 4578775
No 256
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.30 E-value=0.089 Score=54.45 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=63.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec-
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC- 238 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l- 238 (501)
+.|.+|++||- .++-++++..+..||++|.+..|..- ... .+..| +....++++.++++|+|..-+
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999987 78889999999999999999887531 111 12234 344578999999999998743
Q ss_pred -cCch-----h-----hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 -TLNE-----H-----NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 -Plt~-----~-----T~~lI~~~~l~~MK~gAilINva 266 (501)
.... + ....++++.++.+|++++|.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 1110 0 11245666666666666665543
No 257
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.30 E-value=0.012 Score=61.06 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhh--------cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKS--------LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~--------~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
++++|+|||.|.+|..+|-.|...|. ++..+|..... +.... .......+-.+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 56799999999999999999988887 89999986542 11110 01111112235589999999976431
Q ss_pred h---hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q psy7383 242 E---HNH--------HLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~---~T~--------~lI~--~~~l~~MK~gAilINvaR 267 (501)
. +++ .++. .+.+..-.+.+++|+++-
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 1 122 1121 122333347889999984
No 258
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.28 E-value=0.015 Score=59.70 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=59.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCch--hhhhc-------C--ceecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDG--IEKSL-------G--LTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~--~~~~~-------g--v~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.+|+.+|..|...| .+|..+|+..... ....+ + ........+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 47999999999999999999888 4899999875431 11110 1 1111122345899999999886421
Q ss_pred ---hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q psy7383 243 ---HNH--------HLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 ---~T~--------~lI~--~~~l~~MK~gAilINvaR 267 (501)
+++ .+|. .+.+....+.+++|+++-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 111 1121 234455677899999973
No 259
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.22 E-value=0.01 Score=58.44 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=61.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhh-------hcC-------------------cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEK-------SLG-------------------LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~-------~~g-------------------v~~- 220 (501)
..|.+++|.|||+|.+|..+|+.|...|. +++.+|...-+ ...+ ..| ++.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 67777743210 0000 011 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
+ .++++++.++|+|+.++- +.+++.++++...+. +.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 1 124567888999888764 667777777655443 45566664
No 260
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.21 E-value=0.019 Score=59.01 Aligned_cols=112 Identities=24% Similarity=0.222 Sum_probs=74.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhh-hhcCcee----------c-CCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIE-KSLGLTR----------V-YTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~-~~~gv~~----------~-~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|-+|...|.+|..++|.... +.. +..|+.. . ..-.+.+...|+|++++...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 57999999999999999999999999999986421 111 1112210 0 01112346789999998744
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEE
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAAL 290 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaL 290 (501)
++...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 344433 4556667889998888777 344566777776666665443
No 261
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.19 E-value=0.028 Score=61.58 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=72.3
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchhh-hhc----------------------Cc
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGIE-KSL----------------------GL 218 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~-~~~----------------------gv 218 (501)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....... ... .+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 488999999998 557889999999999999999998543211 111 12
Q ss_pred eecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q psy7383 219 TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 219 ~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~ 277 (501)
+.+.++++.++++|+|+++.... +-+.+--++..+.|++..++||+ |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 44456778999999999987643 33333223445668766689985 54 45765553
No 262
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.16 E-value=0.01 Score=52.62 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=51.5
Q ss_pred eEEeec-cchHHHHHHHHHHh-CCCEEEE-ECCCCCch--hhhhc----Cceec---CCHHHHHhcCCEEEEeccCchhh
Q psy7383 177 TLGIVG-LGRIGSAVALRAKA-FGFNVIF-YDPYLPDG--IEKSL----GLTRV---YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~~--~~~~~----gv~~~---~sLdelL~~sDvVil~lPlt~~T 244 (501)
||+||| .|.+|+.+.++|.. ..++++. ++++...+ ..... +.... ..-.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 699999 99999999999976 4556444 44443221 11111 11111 112244599999999988432 2
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
..+. ... ++.|..+|+.+.-
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSST
T ss_pred HHHH-HHH---hhCCcEEEeCCHH
Confidence 2221 222 5788899998753
No 263
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.12 E-value=0.089 Score=54.56 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCc------hhh-------------hhcC-------------ceecCC--HHHHHhcC
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPD------GIE-------------KSLG-------------LTRVYT--LQDLLFQS 231 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~------~~~-------------~~~g-------------v~~~~s--LdelL~~s 231 (501)
||..||..+...|++|..||++... ... ...| ++...+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999987631 000 0011 222222 55788999
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
|+|+-++|.+.+.+..+-.+..+.++++++|.....+ +....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~--~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTST--FLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcccc--CCHHHHHhhcC
Confidence 9999999999999998888888999999999555444 77777777764
No 264
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.11 E-value=0.018 Score=60.46 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=58.2
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEE-EECCCCCch--hhhhc----Cc--eecC--CHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVI-FYDPYLPDG--IEKSL----GL--TRVY--TLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi-~~dr~~~~~--~~~~~----gv--~~~~--sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||. |.+|+.+++.|..+ +.++. .++++...+ ..... +. ..+. +.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 67877 446443211 11111 11 0122 4566667899999999943
Q ss_pred hhhhcccHHHHhc-CCCCcEEEEcCCCCccCHH
Q psy7383 243 HNHHLINEFTIKQ-MRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 243 ~T~~lI~~~~l~~-MK~gAilINvaRG~vVde~ 274 (501)
..+.+ ... .+.|..+|+.+-.-=.+..
T Consensus 80 ~s~~~-----~~~~~~~G~~VIDlS~~fR~~~~ 107 (346)
T TIGR01850 80 VSAEL-----APELLAAGVKVIDLSADFRLKDP 107 (346)
T ss_pred HHHHH-----HHHHHhCCCEEEeCChhhhcCCh
Confidence 22222 222 2568999999854334433
No 265
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.11 E-value=0.11 Score=54.36 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=64.1
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
|.|+||++||-+ ++.++++..+..||++|.+..|..- ... .+..| +....+++++++++|||..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999997 7889999999999999999887531 111 12234 334578999999999998743
Q ss_pred cC--c-----hh-----hhhcccHHHHh-cCCCCcEEEEcC
Q psy7383 239 TL--N-----EH-----NHHLINEFTIK-QMRPGAFLVNTA 266 (501)
Q Consensus 239 Pl--t-----~~-----T~~lI~~~~l~-~MK~gAilINva 266 (501)
=. . ++ ....|+++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 11 0 00 11235666666 367777666553
No 266
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.016 Score=61.94 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cCceecCCHHHHHhcCCEEEEeccCchhhhh-------
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH------- 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~gv~~~~sLdelL~~sDvVil~lPlt~~T~~------- 246 (501)
.++|.|||+|.+|.++|+.|+..|++|.++|++........ ..-......+.+..++|+|+.+.+..+....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 36899999999999999999999999999997653211100 0001112334455789998887654432111
Q ss_pred ---cccHHH--Hhc--C-CCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 247 ---LINEFT--IKQ--M-RPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 247 ---lI~~~~--l~~--M-K~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++.+.. +.. + +.-.+=|--+.|+.-..+-|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 233222 222 2 22245566667887777777777765
No 267
>PLN02342 ornithine carbamoyltransferase
Probab=96.03 E-value=0.16 Score=53.70 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=63.2
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC---chh---hhhcC---ceecCCHHHHHhcCCEEEEecc---
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP---DGI---EKSLG---LTRVYTLQDLLFQSDCVSLHCT--- 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~---~~~~g---v~~~~sLdelL~~sDvVil~lP--- 239 (501)
+.|+||++||= -++.+.++..+..||++|.+..|..- ... .+..+ +....++++.++++|||..-.=
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 78999999986 45778888888999999999887531 111 11222 4455789999999999987531
Q ss_pred Cc-hh--------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 240 LN-EH--------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 240 lt-~~--------T~~lI~~~~l~~MK~gAilINva 266 (501)
.. ++ ....++++.++.+|++++|.-+.
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11 11 11345667777777776665553
No 268
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.00 E-value=0.033 Score=57.10 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=33.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
++.+|++.|||.|..+++++..|...|. +|.++||+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3688999999999999999999988887 799999974
No 269
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.059 Score=57.68 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=70.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-----hhhhhcCceec--CCHHHHHhc-CCEEEEec--cCc-
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-----GIEKSLGLTRV--YTLQDLLFQ-SDCVSLHC--TLN- 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-----~~~~~~gv~~~--~sLdelL~~-sDvVil~l--Plt- 241 (501)
+.||++.|+|.|.+|.++|+.|+..|++|+++|+.... ......|++.. ....+++.+ .|+||..- +.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 67899999999999999999999999999999975421 11223455432 123445554 89888754 211
Q ss_pred hh-------hhhcccHH-HHhcC-CCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 242 EH-------NHHLINEF-TIKQM-RPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 242 ~~-------T~~lI~~~-~l~~M-K~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+. ...++.+. ++..+ +...+-|--+.|+--...-|...|+.
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 01123332 22233 33456666678888777777777775
No 270
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.016 Score=63.30 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=69.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC--CHHHHHhcCCEEEEeccCchhhh----
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY--TLQDLLFQSDCVSLHCTLNEHNH---- 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~--sLdelL~~sDvVil~lPlt~~T~---- 245 (501)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|..... ...+..|+.... ...+.+.++|+|+.+--..+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 57899999999999999999999999999999965321 112334654331 23456788998887643222211
Q ss_pred ------hcccHHHHh--cC-------CCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 246 ------HLINEFTIK--QM-------RPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 246 ------~lI~~~~l~--~M-------K~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.++.+-.|. .+ +...+-|--+-|+.-...-|...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123322221 11 11245566667887777777777775
No 271
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.021 Score=60.33 Aligned_cols=62 Identities=27% Similarity=0.433 Sum_probs=46.3
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcC-ce-ec---CCHHHHHhcCCEEEE
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLG-LT-RV---YTLQDLLFQSDCVSL 236 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~g-v~-~~---~sLdelL~~sDvVil 236 (501)
.+||||||-|..|+-|+..++.+|++|++.|+..+..... +.. +. .. ..+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 3789999999999999999999999999999876432111 111 11 11 247788999999975
No 272
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.93 E-value=0.13 Score=54.00 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=65.1
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|+||++||-+ ++.++++..+..||++|.+..|.. .... .+..| +....++++.++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 789999999975 888999999999999999988753 1111 11234 445578999999999998742
Q ss_pred cC--ch------h-----hhhcccHHHHhcCC-CCcEEEEcC
Q psy7383 239 TL--NE------H-----NHHLINEFTIKQMR-PGAFLVNTA 266 (501)
Q Consensus 239 Pl--t~------~-----T~~lI~~~~l~~MK-~gAilINva 266 (501)
=. .. + ....|+++.++.+| ++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 10 00 0 12235777777775 477776664
No 273
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.028 Score=61.06 Aligned_cols=124 Identities=20% Similarity=0.179 Sum_probs=79.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch----h-hhhcCceecC--CHHHHHhcCCEEEEeccCchhhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG----I-EKSLGLTRVY--TLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~----~-~~~~gv~~~~--sLdelL~~sDvVil~lPlt~~T~ 245 (501)
+.+++|.|+|+|.-|.++|+.|+..|++|+++|.+.... . ....+++... ..++.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 449999999999999999999999999999999665331 1 1123333221 122668889999886 3221111
Q ss_pred h-----------ccc-HHHHhcC--CCCcEEEEcCCCCccCHHHHHHHHHc--------CCceEEEEecCCCCC
Q psy7383 246 H-----------LIN-EFTIKQM--RPGAFLVNTARGGLVDDDSLAAALKQ--------GRIRAAALDVHESEP 297 (501)
Q Consensus 246 ~-----------lI~-~~~l~~M--K~gAilINvaRG~vVde~aL~~aL~~--------g~I~GAaLDVfe~EP 297 (501)
- ++. -++|-+. +.-.+-|--.-|+--.+.-+...|++ |+|...++|+.+++.
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 1 222 2333332 22245555566877666666666665 778888999987743
No 274
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.88 E-value=0.02 Score=57.11 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=56.0
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh-------hhcC-------------------cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE-------KSLG-------------------LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~-------~~~g-------------------v~~- 220 (501)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|...-+ .+. ...| ++.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 46999999999999999999999999887 57777754211 000 0001 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
. .++++++.++|+|+.++ .+.+++.++++...+.
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA 138 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence 1 12456788888887766 5677787777655443
No 275
>KOG2304|consensus
Probab=95.88 E-value=0.0046 Score=61.41 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=84.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch------hhh-------h-cC----------------ceecCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG------IEK-------S-LG----------------LTRVYT 223 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~------~~~-------~-~g----------------v~~~~s 223 (501)
.=+.|+|||.|.||..||+.+...|++|..+|.+.+.- ... . .. ++...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 34679999999999999999999999999999875310 000 0 00 011124
Q ss_pred HHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCC
Q psy7383 224 LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQ 302 (501)
Q Consensus 224 LdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~ 302 (501)
+.++++++|+|+=++-.+-+.+.-|-++.=..+|+.++|+ |++. +...++..+++..... ++|-.|..-|.-
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~srf-~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSRF-AGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhhh-ceeeccCCchhH---
Confidence 4566777887776665444444444455555678888775 5544 5566677777665543 588877655532
Q ss_pred CCCCCCCCeEEecCCC
Q psy7383 303 GNLKDAPNILCTPHAA 318 (501)
Q Consensus 303 ~pL~~~pNVilTPHiA 318 (501)
++=.||=|+..+
T Consensus 163 ----KLvEVir~~~TS 174 (298)
T KOG2304|consen 163 ----KLVEVIRTDDTS 174 (298)
T ss_pred ----HHhhhhcCCCCC
Confidence 222356666544
No 276
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.86 E-value=0.065 Score=55.55 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEe
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~ 237 (501)
+.|++|++||= +++.++++..+..||++|.+..|..-.... -.......++++.++++|+|...
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MPEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-ccceEEECCHHHHhCCCCEEEEC
Confidence 78999999988 589999999999999999999875321100 11134557899999999999774
No 277
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.86 E-value=0.029 Score=48.49 Aligned_cols=84 Identities=21% Similarity=0.350 Sum_probs=55.2
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhhhcc
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~~lI 248 (501)
|.|+|+|.+|+.+++.|+..+.+|++.|..... ...+..++..+ .+ |+++ +.++|.|+++.+... .++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 569999999999999999977799999987532 22233444322 12 2222 678999999887443 4444
Q ss_pred cHHHHhcCCCCcEEE
Q psy7383 249 NEFTIKQMRPGAFLV 263 (501)
Q Consensus 249 ~~~~l~~MK~gAilI 263 (501)
-...++.+-+...+|
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 455666666665555
No 278
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.85 E-value=0.014 Score=57.43 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=64.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCce---ecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLT---RVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~---~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+|.||+|.|||-|..|..=++.|...|++|+++.+...+++. ....+. ...+.++ +..+++|+.++...
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~--- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE--- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH---
Confidence 4699999999999999999999999999999999988733321 111111 1123333 44589988887633
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
-+|++.++.+++-.++||+
T Consensus 84 --~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 --ELNERIAKAARERRILVNV 102 (210)
T ss_pred --HHHHHHHHHHHHhCCceec
Confidence 3567777777777788988
No 279
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.84 E-value=0.083 Score=54.16 Aligned_cols=111 Identities=10% Similarity=0.105 Sum_probs=77.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh--------
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH-------- 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~-------- 246 (501)
|++++|||-=.==..+++.|...|++|..|.-...... -.++....+.++.++++|+|++=+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG--FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc--cccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 57899999888888999999999999888763211110 11455554566669999999999997655321
Q ss_pred --cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 247 --LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 247 --lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
.++++.++.|+++++ +-++ ++..+|-+++++..|. ..|.++
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 257899999998665 3343 4555666677888876 555444
No 280
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.81 E-value=0.21 Score=52.43 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=66.4
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC--Cch--------hhhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL--PDG--------IEKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~--~~~--------~~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|++|++||=+ ++.++++..+..+|++|.+..|.. ..+ ..+..| +....++++.++++|||..-+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 789999999986 678888999999999999998753 111 112234 344578999999999998732
Q ss_pred ----cCch---hh------hhcccHHHHhcC-CCCcEEEEcCC
Q psy7383 239 ----TLNE---HN------HHLINEFTIKQM-RPGAFLVNTAR 267 (501)
Q Consensus 239 ----Plt~---~T------~~lI~~~~l~~M-K~gAilINvaR 267 (501)
.... +. ...|+++.++++ |++++|.-+.-
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP 276 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLP 276 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCC
Confidence 1000 11 123678888876 78888877653
No 281
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.78 E-value=0.027 Score=59.07 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=42.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEEE-CCCCCch--hhhh------------------cCceecCCHHHHHhcCCE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIFY-DPYLPDG--IEKS------------------LGLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~~-dr~~~~~--~~~~------------------~gv~~~~sLdelL~~sDv 233 (501)
.+|||+|+|+||+.+++.+... +++|.+. |+..... ..+. .++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3799999999999999988754 6887765 4322100 0111 122223467788888999
Q ss_pred EEEeccC
Q psy7383 234 VSLHCTL 240 (501)
Q Consensus 234 Vil~lPl 240 (501)
|+.+.|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9998763
No 282
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.75 E-value=0.043 Score=56.32 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=69.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcC----ceecCCHHHH--HhcCCEEEEeccCch
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLG----LTRVYTLQDL--LFQSDCVSLHCTLNE 242 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~g----v~~~~sLdel--L~~sDvVil~lPlt~ 242 (501)
.+.|+++.|+|.|..+++++..|+..|+ +|.+++|+.++. +.+.++ ......++++ +.++|+||.++|..-
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 3678999999999999999999999995 799999986542 222222 1011122222 226999999999643
Q ss_pred hhh---hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 243 HNH---HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 243 ~T~---~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
.-. .+++ ...++++.++.++--... ++.=|..|=++|
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 322 1333 566778888888755443 333333333334
No 283
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.74 E-value=0.026 Score=57.74 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=54.9
Q ss_pred EEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh------hhh---c----CceecCCHHHHHhcCCEEEEeccC--c
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI------EKS---L----GLTRVYTLQDLLFQSDCVSLHCTL--N 241 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~------~~~---~----gv~~~~sLdelL~~sDvVil~lPl--t 241 (501)
|+|||.|.||..+|..+...|. +|+.+|....... ... . .+....+. +.+++||+|+++... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 6899999999999999987665 9999998753211 000 0 11112344 458999999997731 1
Q ss_pred ---------hhhhhccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 242 ---------EHNHHLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ---------~~T~~lI~--~~~l~~MK~gAilINvaRG 268 (501)
+++..++. .+.+....+.+++|+++-.
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 11112221 1233444567788888743
No 284
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.72 E-value=0.46 Score=54.92 Aligned_cols=209 Identities=18% Similarity=0.119 Sum_probs=131.0
Q ss_pred CCCcEEEEcCccccc-cchhh-hh-hcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 91 KTLRIIVRIGSGVDN-IDVKA-AG-ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 91 p~LK~I~~~gaG~D~-ID~~a-a~-~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
|+...|++-=.+..+ +.++. .+ +..|+|.|. +.+ -+|--+++-+|+.+|-. |
T Consensus 126 p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~D-D~~--GTa~v~lA~l~na~~~~---------~------------- 180 (752)
T PRK07232 126 PTFGGINLEDIKAPECFYIEEKLRERMDIPVFHD-DQH--GTAIISAAALLNALELV---------G------------- 180 (752)
T ss_pred CCccEEeeeecCCchHHHHHHHHHHhcCCCeecc-ccc--hHHHHHHHHHHHHHHHh---------C-------------
Confidence 444455554444332 22222 22 346899998 443 45667788888877742 1
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHhCCC---EEEEECCCC----Cc--h--hhhh-c-CceecCCHHHHHhcCCEE
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKAFGF---NVIFYDPYL----PD--G--IEKS-L-GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~---~Vi~~dr~~----~~--~--~~~~-~-gv~~~~sLdelL~~sDvV 234 (501)
+.|...+|.|.|.|.-|-.+|+.|...|. +++.+|++- .. . ..+. + .-....+|+|+++.+|++
T Consensus 181 ---~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~ 257 (752)
T PRK07232 181 ---KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVF 257 (752)
T ss_pred ---CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEE
Confidence 24788999999999999999999999998 788998652 11 0 1111 0 012234899999999988
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEe
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCT 314 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilT 314 (501)
+-. . +.++|+++.++.|.+..++.=.+....--..+.+.....+.|.+.+- ...| -+.-|+++-
T Consensus 258 iG~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p--------nQ~NN~~~F 321 (752)
T PRK07232 258 LGL-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGR---SDYP--------NQVNNVLCF 321 (752)
T ss_pred EEc-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECC---cCCC--------Ccccceeec
Confidence 753 2 25899999999999999999999876521222222332334554331 1111 156789999
Q ss_pred cCCCC-----CcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 315 PHAAF-----YSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 315 PHiAg-----~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
|=++- ....-.++|...+++.|..+..-+
T Consensus 322 Pgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~ 355 (752)
T PRK07232 322 PYIFRGALDVGATTINEEMKLAAVRAIAELAREE 355 (752)
T ss_pred chhhHHHHHcCCccCCHHHHHHHHHHHHhhcccc
Confidence 97652 122233466666777776655443
No 285
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.72 E-value=0.032 Score=59.94 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=52.7
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCC-CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++.+++|+|+|+ ..-...+++.|+..| .+|.+|||..........+.....+++|.+++||+|+++...
T Consensus 317 ~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 317 RASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVDH 396 (415)
T ss_pred CcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCCC
Confidence 478999999998 457789999999996 999999998543211111111236899999999999998764
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 397 ~ 397 (415)
T PRK11064 397 S 397 (415)
T ss_pred H
Confidence 3
No 286
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.72 E-value=0.019 Score=57.43 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=59.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhh-------hcC-----------------c--ee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEK-------SLG-----------------L--TR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~-------~~g-----------------v--~~- 220 (501)
..|+.++|.|||+|.+|..+++.|...|. ++.++|...-+ .+.+ ..| + +.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999997 67777743210 0000 000 1 10
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
. ..++++++++|+|+.++ .+.+++.++++...+.. .-+|..
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~~---ip~v~~ 153 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAAK---KPLVSG 153 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHhC---CEEEEe
Confidence 1 12356788899888776 56677777776555543 335554
No 287
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.049 Score=58.82 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=70.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEec--cCc-h-----
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHC--TLN-E----- 242 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~l--Plt-~----- 242 (501)
++.+++|.|||+|.+|..+|+.|+..|++|.++|...... .....|++....-.+-+.++|+||..= |.+ +
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4778999999999999999999999999999999654321 112345542211123357899887531 211 1
Q ss_pred --hhhh----cccH-HHHhc-C-----CCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 243 --HNHH----LINE-FTIKQ-M-----RPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 243 --~T~~----lI~~-~~l~~-M-----K~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+++. ++.+ +.+.. + +...+-|.-+.|+.-...-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 1111 1332 22222 2 334566777889988888888888763
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.70 E-value=0.055 Score=55.73 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=62.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CHHHHHh---cCCEEEEeccCch
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TLQDLLF---QSDCVSLHCTLNE 242 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sLdelL~---~sDvVil~lPlt~ 242 (501)
..|++|.|+|.|.+|...++.++..|. +|++.+++..+ +..+++|...+. +++++.. ..|+|+-++.. +
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~ 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-P 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-H
Confidence 358999999999999999999999999 58888876533 455566654321 2334332 26888776542 1
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ .+ ...++.++++..+|.++.
T Consensus 247 ~---~~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 S---SI-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---HH-HHHHHHhhcCCEEEEEcc
Confidence 1 11 456777888888888875
No 289
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.041 Score=58.75 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=62.3
Q ss_pred ccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
|+||||||+|+- .-...++++|+..|++|.+|||...+....- .++....++++++++||+|+++.- .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 899999999984 3567899999999999999999764432222 135677899999999999998753 3
Q ss_pred hhhhhcccHHHHhcCCCCcEEEE
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilIN 264 (501)
++-+.+ +-+.+ .|| +.++|+
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 344443 33333 565 344444
No 290
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.024 Score=61.81 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=72.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecC--CHHHHHhcCCEEEEec--cC-chhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY--TLQDLLFQSDCVSLHC--TL-NEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~--sLdelL~~sDvVil~l--Pl-t~~T 244 (501)
.+.+++|.|+|+|.+|+++|+.|...|++|.++|+..... .....|+.... ...+.+.++|+||..- |. .++.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4788999999999999999999999999999999764322 12334665432 2234567899888752 22 2221
Q ss_pred h-------hcccHHHHhc-------C--CCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 H-------HLINEFTIKQ-------M--RPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 ~-------~lI~~~~l~~-------M--K~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
. .++.+-.+.. + +...+-|--+-|+.-...-|...|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 1233333321 1 1234555556788777777778887633
No 291
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.67 E-value=0.023 Score=60.72 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=55.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceec-------CCHHHH-HhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRV-------YTLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~-------~sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
++|.|+|+|.+|+.+++.|...|++|+++|++.... .....++..+ ..++++ +.++|+|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~-- 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET-- 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH--
Confidence 478999999999999999999999999999865321 1111332211 134455 7789999999875433
Q ss_pred hcccHHHHhcC-CCCcEEEE
Q psy7383 246 HLINEFTIKQM-RPGAFLVN 264 (501)
Q Consensus 246 ~lI~~~~l~~M-K~gAilIN 264 (501)
+++-....+.+ +...+++-
T Consensus 79 n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 79 NMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred HHHHHHHHHHhcCCCeEEEE
Confidence 33323334444 34444443
No 292
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.66 E-value=0.067 Score=57.32 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=70.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------hhhcCceec--CCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------EKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T 244 (501)
+.+|+|.|+|.|.+|..+|+.|...|++|.++|+...... ....+++.. ...++...++|+|+.+.-..+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~ 82 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDS 82 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999998742211 112244321 23346678899999875433322
Q ss_pred hhc----------cc-HH-HHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 HHL----------IN-EF-TIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~~l----------I~-~~-~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.-+ +. .+ .....+...+-|--+.|+--..+-|...|+.
T Consensus 83 ~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 83 PPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred HHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 211 11 11 2222333344455567887777777777765
No 293
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.66 E-value=0.26 Score=53.44 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=50.1
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhC-CCEEEEECCCCC---chhh---hhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAF-GFNVIFYDPYLP---DGIE---KSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~af-G~~Vi~~dr~~~---~~~~---~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|+||++||-+ ++..+++..+..+ |++|.+..|..- .... +..| +....++++.++++|||....
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999984 8899999998876 999999887531 1211 1223 444578999999999998743
No 294
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.66 E-value=0.25 Score=52.38 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=48.4
Q ss_pred cccCCeEEeeccc--------hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcC
Q psy7383 172 RIRGDTLGIVGLG--------RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 172 ~L~gktVGIVGlG--------~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~s 231 (501)
.|+|+||+|+|.| ++.++++..+..||++|.+..|.. .+.. .+..| +....++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999753 455788888999999999998763 1111 11234 33457899999999
Q ss_pred CEEEEe
Q psy7383 232 DCVSLH 237 (501)
Q Consensus 232 DvVil~ 237 (501)
|||..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999875
No 295
>KOG2711|consensus
Probab=95.65 E-value=0.041 Score=57.60 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=66.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHH-------hCCCEEEEECCCC--Cc---hh-----------------hhhcCceecCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAK-------AFGFNVIFYDPYL--PD---GI-----------------EKSLGLTRVYT 223 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~-------afG~~Vi~~dr~~--~~---~~-----------------~~~~gv~~~~s 223 (501)
-.-++|+|||.|+.|+.+|+.+. .|..+|..|-... .. .+ ....++..+.+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 34478999999999999999985 2445566553221 11 00 11123445678
Q ss_pred HHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 224 LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 224 LdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+.+++.++|+++..+|.+ -+.. |-++...+.|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vPhQ-f~~~-ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQ-FIPR-ICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChh-hHHH-HHHHHhcccCCCCeEEEeecce
Confidence 999999999999999954 2233 3467888999999999998873
No 296
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.64 E-value=0.048 Score=54.73 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=57.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
.++-|+|-|.+++.+|+.++.+|++|+++|++.... .. +....++.++...| .+.+..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~~----------~~~~~~~~~~~~~~----------~~~~~~ 158 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--PE----------DLPDGVATLVTDEP----------EAEVAE 158 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--cc----------cCCCCceEEecCCH----------HHHHhc
Confidence 579999999999999999999999999999764310 00 00123332221111 223333
Q ss_pred CCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 256 MRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 256 MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+.+.+.+|=+.|+.-.|.+.|..+|++.
T Consensus 159 ~~~~t~vvi~th~h~~D~~~L~~aL~~~ 186 (246)
T TIGR02964 159 APPGSYFLVLTHDHALDLELCHAALRRG 186 (246)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHhCC
Confidence 4567777777788888988888888543
No 297
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.64 E-value=0.026 Score=58.31 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=59.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC----CchhhhhcCceecCC----HHH--HHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL----PDGIEKSLGLTRVYT----LQD--LLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~----~~~~~~~~gv~~~~s----Lde--lL~~sDvVil~lPlt~~ 243 (501)
.|++|.|+|.|.||+..++.++..|++|++++++. ..+..+++|+..+.. +.+ .....|+|+-++... .
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~ 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence 57899999999999999999999999999998742 123445566554321 111 123467777765421 1
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ .+.++.|+++..+|.++.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 22 456677888877777654
No 298
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.63 E-value=0.19 Score=52.85 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=62.8
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|++|++||-+ ++.++++..+..||++|.+..|..- ... .+..| +....++++.++++|+|..-+
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~ 233 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDV 233 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecC
Confidence 789999999976 6899999999999999999887531 111 12234 445578999999999998742
Q ss_pred cCch-------------hhhhcccHHHHhcC-CCCcEEEEcC
Q psy7383 239 TLNE-------------HNHHLINEFTIKQM-RPGAFLVNTA 266 (501)
Q Consensus 239 Plt~-------------~T~~lI~~~~l~~M-K~gAilINva 266 (501)
=... -....++++.++.. |++++|.-+.
T Consensus 234 W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 234 WVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred cccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 1100 01123456666663 5666665553
No 299
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.63 E-value=0.022 Score=61.43 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=90.1
Q ss_pred CeEEeeccchHHHHHHH---HH---HhCCCEEEEECCCCCchh---------hhh----cCceecCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVAL---RA---KAFGFNVIFYDPYLPDGI---------EKS----LGLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~---~L---~afG~~Vi~~dr~~~~~~---------~~~----~gv~~~~sLdelL~~sDvVil 236 (501)
.+|+|||.|.+|...+- .+ ...|.+|..||+...... ... ..+....++++.+++||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998555 32 334679999998753210 011 122334578899999999999
Q ss_pred eccCch--h-hh--------h-------------c--------ccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 237 HCTLNE--H-NH--------H-------------L--------INEFTIKQMR---PGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 237 ~lPlt~--~-T~--------~-------------l--------I~~~~l~~MK---~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+++... . ++ + + +-.+..+.++ |.+++||.+-.--+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 998310 0 00 0 1 1123333343 699999998876566666666655
Q ss_pred cCCceEEEEecCCCCCCCCC--CCCCCCC------CCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy7383 282 QGRIRAAALDVHESEPYNVF--QGNLKDA------PNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342 (501)
Q Consensus 282 ~g~I~GAaLDVfe~EPl~~~--~~pL~~~------pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G 342 (501)
.++.| +. +.+.... -...+.. -.++=-=|.+|.+.-.. + .+.+...|.+++..
T Consensus 161 -~rviG--~c---~~~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~-~-G~d~~p~l~~~~~~ 221 (423)
T cd05297 161 -IKTVG--LC---HGVQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEY-N-GEDLYPLLDEWIEE 221 (423)
T ss_pred -CCEEE--EC---CcHHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheE-C-CcchHHHHHHHHhc
Confidence 45544 32 1122100 0011111 24667788888774322 2 33345556666654
No 300
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.62 E-value=0.027 Score=61.62 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=70.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh--hhhc--CceecC--CHHHHHhcCCEEEEe--ccCc--
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI--EKSL--GLTRVY--TLQDLLFQSDCVSLH--CTLN-- 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~--~~~~--gv~~~~--sLdelL~~sDvVil~--lPlt-- 241 (501)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|..... .. .+.. +++... ...+.+.++|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 56889999999999999999999999999999975432 11 1222 333211 124556789999986 4432
Q ss_pred ---hh-------hhhccc-HHHHh-cC--------CCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 242 ---EH-------NHHLIN-EFTIK-QM--------RPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 242 ---~~-------T~~lI~-~~~l~-~M--------K~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++ ...++. .+.+. .+ ++..+-|--+-|+--...-|...|++...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 21 112232 22221 12 12345555567887777777777765443
No 301
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.62 E-value=0.26 Score=50.55 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=104.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhC----CC-------EEEEECCCC----C-chh-------hhhcCceecCCHHHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAF----GF-------NVIFYDPYL----P-DGI-------EKSLGLTRVYTLQDLL 228 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~af----G~-------~Vi~~dr~~----~-~~~-------~~~~gv~~~~sLdelL 228 (501)
.|.+.+|.|+|.|.-|-.+|+.+... |. +++.+|++- . .+. .+...-....+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 47889999999999999999999876 77 788888762 1 011 1111101234899999
Q ss_pred h--cCCEEEEeccCchhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH--cCC-ceEEEEecCCCCCCCC
Q psy7383 229 F--QSDCVSLHCTLNEHNHHLINEFTIKQMR---PGAFLVNTARGGLVDDDSLAAALK--QGR-IRAAALDVHESEPYNV 300 (501)
Q Consensus 229 ~--~sDvVil~lPlt~~T~~lI~~~~l~~MK---~gAilINvaRG~vVde~aL~~aL~--~g~-I~GAaLDVfe~EPl~~ 300 (501)
+ +.|+++=+- ..-++|+++.++.|. +..++.=.|+....-|-.-.++.+ +|+ |.+.+.-.-..|.-..
T Consensus 102 ~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr 177 (279)
T cd05312 102 KAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGK 177 (279)
T ss_pred HhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCe
Confidence 9 889987642 134899999999999 899999999876533433333333 355 5543321111111000
Q ss_pred CCCCCCCCCCeEEecCCCCC-----cHHHHHHHHHHHHHHHHHHHh
Q psy7383 301 FQGNLKDAPNILCTPHAAFY-----SEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~-----T~ea~~~~~~~~~~ni~~~l~ 341 (501)
...--+.-|+++-|=++-- ...-.++|...+++.|.++..
T Consensus 178 -~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~ 222 (279)
T cd05312 178 -TYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVT 222 (279)
T ss_pred -EecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCC
Confidence 1112256789999987632 222335677777777777654
No 302
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.59 E-value=0.029 Score=54.95 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=33.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~ 207 (501)
..|+.++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999999999985 8888865
No 303
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.58 E-value=0.02 Score=59.00 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=57.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCchh--hhhc-Cc-------e-ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDGI--EKSL-GL-------T-RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~~--~~~~-gv-------~-~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.+|..+|..|...| .+|..+|+...... ...+ .. . ...+. +.+++||+|+++++...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCC
Confidence 37999999999999999999888 58999998753211 1111 00 0 11233 55899999999988532
Q ss_pred ---hhh--------hccc--HHHHhcCCCCcEEEEcC
Q psy7383 243 ---HNH--------HLIN--EFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ---~T~--------~lI~--~~~l~~MK~gAilINva 266 (501)
+++ .++. .+.+....+.+++++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 111 1121 12333345678888875
No 304
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.56 E-value=0.023 Score=59.63 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.9
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46999999999999999999999999998 89998864
No 305
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.55 E-value=0.063 Score=56.53 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=71.5
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCc-hhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN-EHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt-~~T~~lI~ 249 (501)
.+|||||+ .+|+..++.++.. ++++. ++|+.... ...+.+|+..+.+++|++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6899999988775 47755 47776533 3455677776779999999999999999842 222221
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
+-..+.|+.|.-++.=---.+-+.++|+++.++..+.-
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l 118 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRY 118 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEE
Confidence 22333445553333221112346668888888877763
No 306
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.02 Score=56.56 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=47.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh--h-hcCceec-------CCHHHH-HhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE--K-SLGLTRV-------YTLQDL-LFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~--~-~~gv~~~-------~sLdel-L~~sDvVil~lPlt 241 (501)
+++.|+|+|.+|..+|+.|...|++|+..|+....... . ......+ ..|.++ +.++|+++.+...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 57999999999999999999999999999987543211 1 1222211 124444 77889998887643
No 307
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.48 E-value=0.041 Score=46.97 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=46.5
Q ss_pred CeEEeeccchHHHHHHHHH-HhCCCE-EEEECCCCCchhhhhcCceecCCHHHHHhc--CCEEEEeccCchhhhhcc
Q psy7383 176 DTLGIVGLGRIGSAVALRA-KAFGFN-VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L-~afG~~-Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~--sDvVil~lPlt~~T~~lI 248 (501)
.++.|+|+|++|++++..+ ...|++ +.++|..+...-..-.++....+++++.+. .|+-++++|.. ..+..+
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 4799999999999988554 445655 455665544322223355544488888776 99999999843 334443
No 308
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.47 E-value=0.027 Score=60.02 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhC-CCEEEEECCCCCchh--hhhc------CceecCCHHH-HHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAF-GFNVIFYDPYLPDGI--EKSL------GLTRVYTLQD-LLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~af-G~~Vi~~dr~~~~~~--~~~~------gv~~~~sLde-lL~~sDvVil~lPlt 241 (501)
..-++|+|+|. |.+|+.+.+.|... .++|..+.+....+. .... ....+.+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999887 788888765432211 1100 0111122222 258899999999843
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
...+....|+.|..+|+.+..--.+.+++++
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 3334444556789999999766566554444
No 309
>PRK12862 malic enzyme; Reviewed
Probab=95.43 E-value=0.35 Score=56.04 Aligned_cols=184 Identities=18% Similarity=0.123 Sum_probs=119.3
Q ss_pred cCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHH
Q psy7383 114 LGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALR 193 (501)
Q Consensus 114 ~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~ 193 (501)
.+|+|.|. +.+ -+|-.+++-+|+.+|-. | +.|...+|.|.|.|.-|-.+|+.
T Consensus 160 ~~ip~f~D-D~~--GTa~v~la~l~~a~~~~---------~----------------~~~~~~~iv~~GaGaag~~~a~~ 211 (763)
T PRK12862 160 MKIPVFHD-DQH--GTAIIVAAALLNGLKLV---------G----------------KDIEDVKLVASGAGAAALACLDL 211 (763)
T ss_pred CCCceEec-Ccc--cHHHHHHHHHHHHHHHh---------C----------------CChhhcEEEEEChhHHHHHHHHH
Confidence 36899998 433 35666778888877642 1 24788999999999999999999
Q ss_pred HHhCCC---EEEEECCCC----Cc-h-hh--h-hc-CceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 194 AKAFGF---NVIFYDPYL----PD-G-IE--K-SL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 194 L~afG~---~Vi~~dr~~----~~-~-~~--~-~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|...|. +++.+|+.- .. + .. + .+ .-....+|+|+++.+|+++-+- +.++|+++.++.|.+..
T Consensus 212 l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 286 (763)
T PRK12862 212 LVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRP 286 (763)
T ss_pred HHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 999998 789999542 00 0 00 1 00 0012248999999999987542 25899999999999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCC-----cHHHHHHHHHHHHHH
Q psy7383 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY-----SEASCTELREMAASE 335 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~-----T~ea~~~~~~~~~~n 335 (501)
++.=.|....--..+.+.....+.|.+.+ .. +.| -+.-|+++-|=++-- ...-.++|.-.+++.
T Consensus 287 iifalsNP~~E~~p~~a~~~~~~~i~atG-----rs-----~~p-~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~a 355 (763)
T PRK12862 287 LIFALANPTPEILPEEARAVRPDAIIATG-----RS-----DYP-NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRA 355 (763)
T ss_pred EEEeCCCCcccCCHHHHHHhcCCEEEEEC-----Cc-----CCC-CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHH
Confidence 99999987642112222222223455433 11 111 256689999987621 122334566666666
Q ss_pred HHHHHh
Q psy7383 336 IRRAIV 341 (501)
Q Consensus 336 i~~~l~ 341 (501)
|..+..
T Consensus 356 la~~~~ 361 (763)
T PRK12862 356 IAELAR 361 (763)
T ss_pred HHhccc
Confidence 666554
No 310
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.40 E-value=0.058 Score=55.95 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=66.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhh----hhc------CceecCCHHHHHhcCCEEEEeccC-
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIE----KSL------GLTRVYTLQDLLFQSDCVSLHCTL- 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~----~~~------gv~~~~sLdelL~~sDvVil~lPl- 240 (501)
.+|+|||.|.+|..+|-.|...|. ++..+|.+... +.. ... .+....+.++ +++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999999876654 79999976532 111 111 1221234554 8999999996542
Q ss_pred -ch-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCHH--HHHHH--HHcCCceEE
Q psy7383 241 -NE-HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDDD--SLAAA--LKQGRIRAA 288 (501)
Q Consensus 241 -t~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde~--aL~~a--L~~g~I~GA 288 (501)
.+ +|+- ++ | .+.+....+.+++|+++-. +|.- .+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP--~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP--VDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh--HHHHHHHHHHHhCCCHHHEEec
Confidence 11 2331 11 1 1344445789999999843 4432 23333 445566655
No 311
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.38 E-value=0.051 Score=57.29 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=43.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce---ecC---CHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT---RVY---TLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~---~~~---sLdelL~~sDvVil 236 (501)
++|||||-|.+|+.++..++.+|++|+++|+............. ... .+.++++.||+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 78999999999999999999999999999987543111110100 112 35667889998764
No 312
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.38 E-value=0.082 Score=53.51 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=44.8
Q ss_pred CeEEeec-cchHHHHHHHHHHh-CCCEEEE-ECCCCCc----hhhh-----hcCceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKA-FGFNVIF-YDPYLPD----GIEK-----SLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~----~~~~-----~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+.... .... ..++..+.+++++...+|+|+.+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999975 5788655 6743221 1111 1345555688888667999999875
No 313
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.36 E-value=0.047 Score=56.57 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=57.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCC-EEEEECCCC-------------Cch--h-------h----hhc--Cce--e-----
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL-------------PDG--I-------E----KSL--GLT--R----- 220 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~-------------~~~--~-------~----~~~--gv~--~----- 220 (501)
+|.|||+|.+|..+|+.|...|. +++.+|... ..+ . . ++. .++ .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 577776321 001 0 0 000 111 0
Q ss_pred ------------------cCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 221 ------------------VYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 221 ------------------~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
...++++++++|+|+.++ .+-++|.+++..-...-| .+|+.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~~k---~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAKNK---LVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHhCC---cEEEEEe
Confidence 012568899999999987 788899888765544433 6777654
No 314
>PLN02527 aspartate carbamoyltransferase
Probab=95.36 E-value=0.13 Score=53.27 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=62.3
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhC-CCEEEEECCCC---Cchh---hhhcC--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAF-GFNVIFYDPYL---PDGI---EKSLG--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~af-G~~Vi~~dr~~---~~~~---~~~~g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
+.|+||++||-+ ++.++++..+..| |++|.+..|.. .... .+..| +....++++.++++|||.... .
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~-~ 227 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR-I 227 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-c
Confidence 789999999965 6889999998887 99999888753 1111 11223 334568999999999998843 2
Q ss_pred chh-------------hhhcccHHHHhcCCCCcEEEEc
Q psy7383 241 NEH-------------NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 241 t~~-------------T~~lI~~~~l~~MK~gAilINv 265 (501)
..+ -...|+++.++.+|++++|.-+
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 111 0134566666666666666544
No 315
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.31 E-value=0.11 Score=53.89 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=85.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce------------ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT------------RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~------------~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|.|+|.|.||..++.+|...|..|+.+.|....+..++.|+. ....-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 47999999999999999999999888888766532222222221 1112235677899999998643 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC---CCCCCCCCCCCCCCCCCeEEecCCCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH---ESEPYNVFQGNLKDAPNILCTPHAAFY 320 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf---e~EPl~~~~~pL~~~pNVilTPHiAg~ 320 (501)
+..++ +.....+++.++++-+--| +=.++.+-+.+.+.+|.+ ++..+ ..+|--. -......+.+.+..+..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~v---~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLG-GVTTHGAVREGPGHV---VHTGLGDTVIGELRGGR 153 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEE-EEeeeeeEecCCceE---EEecCCcEEEccCCCCc
Confidence 44444 5677778889888876665 334445666666665543 33322 2222211 12234567777776655
Q ss_pred c
Q psy7383 321 S 321 (501)
Q Consensus 321 T 321 (501)
+
T Consensus 154 ~ 154 (307)
T COG1893 154 D 154 (307)
T ss_pred h
Confidence 4
No 316
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.30 E-value=0.31 Score=50.69 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEE
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil 236 (501)
+.|++|++||= +++..+++..+..+|+ +|.+..|..-. .......+....++++.++++|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 78999999998 5999999999999999 99998875311 11111235555789999999999976
No 317
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.28 E-value=0.027 Score=62.59 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=58.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~~ 246 (501)
.++-|+|+|++|+.+|+.|+..|.+|++.|.+.+. +..++.+...+ .+ ++++ ++++|.|+++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 56899999999999999999999999999987543 22233443322 12 2222 5689999998887666655
Q ss_pred cccHHHHhcCCCCcEEEE
Q psy7383 247 LINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 247 lI~~~~l~~MK~gAilIN 264 (501)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5432 233345555553
No 318
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.27 E-value=0.032 Score=59.09 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|.+++|.|||+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999998 68888865
No 319
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.24 E-value=0.036 Score=62.38 Aligned_cols=91 Identities=16% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
..+|.|+|+|++|+.+++.|...|.++++.|.+.+. +..++.|...+ .+ |+++ +.++|.|+++++..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 457999999999999999999999999999977543 22334453321 12 2222 668999999988665554
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.++ ...+++.|...+|-.+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 443 44556667766665544
No 320
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.22 E-value=0.044 Score=59.31 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=72.5
Q ss_pred ccCCeEEeeccchHHHH-HHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEeccC---chhhh
Q psy7383 173 IRGDTLGIVGLGRIGSA-VALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHCTL---NEHNH 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~-iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~lPl---t~~T~ 245 (501)
..+++|.|||+|..|.+ +|+.|+..|++|.++|...... ..++.|+.... .-.+.+.++|+|++.--. .+..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 7999999999999999765321 12234554321 223456789988875322 22211
Q ss_pred -------hcccHH-HHh-cCC-CCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 246 -------HLINEF-TIK-QMR-PGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 246 -------~lI~~~-~l~-~MK-~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.++.+- ++. .++ ...+-|--+.|+--...-|...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234433 333 333 245666667898877777778887654
No 321
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.17 E-value=0.06 Score=64.05 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=46.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhC-CCE-------------EEEECCCCCchh--hhhc-Cc---ee-cCCHHHH---Hh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAF-GFN-------------VIFYDPYLPDGI--EKSL-GL---TR-VYTLQDL---LF 229 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~af-G~~-------------Vi~~dr~~~~~~--~~~~-gv---~~-~~sLdel---L~ 229 (501)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++..... .+.. ++ .. +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 333 888998764322 1212 31 21 3455555 46
Q ss_pred cCCEEEEeccC
Q psy7383 230 QSDCVSLHCTL 240 (501)
Q Consensus 230 ~sDvVil~lPl 240 (501)
++|+|++++|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
No 322
>PRK08328 hypothetical protein; Provisional
Probab=95.16 E-value=0.053 Score=53.72 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=32.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46999999999999999999999999997 57777744
No 323
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.16 E-value=0.15 Score=52.70 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=65.1
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCCC---chh---hhhcCc--eecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYLP---DGI---EKSLGL--TRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~~---~~~---~~~~gv--~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.|++|++||-+ ++.++++..+..||++|.+..|..- .+. .+..|. ....++++.++++|||...- ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 789999999995 9999999999999999999987632 111 112343 34578999999999997732 11
Q ss_pred h------hh------hhcccHHHHhcCCCCcEEEEcC
Q psy7383 242 E------HN------HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 242 ~------~T------~~lI~~~~l~~MK~gAilINva 266 (501)
. +. ..-|+++.++.+|++++|.-+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 0 00 1235667777777777776543
No 324
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.15 E-value=0.12 Score=54.34 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=49.8
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEE
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil 236 (501)
.+.|++|++||= .++.++++..+..+|++|.++.|.. ..... +..| +....++++.++++|||..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 378999999997 6788888888999999999998763 21211 1123 4455789999999999987
No 325
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.13 E-value=0.051 Score=56.95 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=56.4
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEEE-ECCCCCc-hhhhhcC-ce-----ecCCHHH-HHhcCCEEEEeccCchhh
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVIF-YDPYLPD-GIEKSLG-LT-----RVYTLQD-LLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi~-~dr~~~~-~~~~~~g-v~-----~~~sLde-lL~~sDvVil~lPlt~~T 244 (501)
++|+|||. |.+|+.+++.|... ++++.+ +++.... ......+ +. .+.++++ .+.++|+|++|+|.. ..
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-VS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-HH
Confidence 58999996 99999999999877 677655 5533211 1111111 11 1223333 457899999999853 22
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde 273 (501)
..++ .+.++.|..+||.+-.-=.+.
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCC
Confidence 2222 122357899999985443444
No 326
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.11 E-value=0.046 Score=56.22 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=57.1
Q ss_pred EEeeccchHHHHHHHHHHhCC--CEEEEECCCCCchhhhhc---------C---ceecCCHHHHHhcCCEEEEeccCch-
Q psy7383 178 LGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDGIEKSL---------G---LTRVYTLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~~~~---------g---v~~~~sLdelL~~sDvVil~lPlt~- 242 (501)
|+|||.|.+|..+|-.|...| .++..+|........... . +....+ .+.+++||+|+++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 589999987542111110 0 111123 468999999999886311
Q ss_pred --hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q psy7383 243 --HNH--------HLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 --~T~--------~lI~--~~~l~~MK~gAilINvaR 267 (501)
+++ .++. ...+....+++++|+++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 111 1111 223344458999999984
No 327
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.11 E-value=0.044 Score=50.73 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=47.8
Q ss_pred EEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-------CCHHHHHhcCCEEEEeccCchh
Q psy7383 178 LGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-------YTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 178 VGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-------~sLdelL~~sDvVil~lPlt~~ 243 (501)
|.|+| .|.+|+.+++.|...|++|+++.|+...... ..+++.+ .++.+.++.+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 57888 5999999999999999999999988653221 2333221 2345678899999999875433
No 328
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.11 E-value=0.077 Score=54.35 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=48.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc----Cc--eecCC---HHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL----GL--TRVYT---LQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~----gv--~~~~s---LdelL~~sDvVil~lPl 240 (501)
+.+|++.|+|.|..+++++-.|...|+ +|.++||...+. +...+ +. ....+ +++.+..+|+||.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 568999999999999999999999997 689999975432 21111 11 01112 23456778999988884
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 3
No 329
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.10 E-value=0.38 Score=48.71 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=102.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-----------EEEEECCCC----Cc-hh---hhh-----cCceecCCHHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-----------NVIFYDPYL----PD-GI---EKS-----LGLTRVYTLQDL 227 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-----------~Vi~~dr~~----~~-~~---~~~-----~gv~~~~sLdel 227 (501)
.|.+.||.|+|.|..|-.+|+.|...+. +++.+|+.- .. .. .+. .......+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4788999999999999999999987765 688888652 10 10 011 111223589999
Q ss_pred Hh--cCCEEEEeccCchhhhhcccHHHHhcCC---CCcEEEEcCCCCccCH---HHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 228 LF--QSDCVSLHCTLNEHNHHLINEFTIKQMR---PGAFLVNTARGGLVDD---DSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 228 L~--~sDvVil~lPlt~~T~~lI~~~~l~~MK---~gAilINvaRG~vVde---~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
++ +.|+++=.. ...++|.++.++.|. +..++.=.|+...--| ++.+++=+.+.|.+.+.-.+..+-..
T Consensus 102 v~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g 177 (254)
T cd00762 102 VEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNG 177 (254)
T ss_pred HHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCC
Confidence 99 999987642 235899999999999 9999999998766333 33333322234543332222221100
Q ss_pred CCCCCCCCCCCeEEecCCCCCcH-----HHHHHHHHHHHHHHHHHHh
Q psy7383 300 VFQGNLKDAPNILCTPHAAFYSE-----ASCTELREMAASEIRRAIV 341 (501)
Q Consensus 300 ~~~~pL~~~pNVilTPHiAg~T~-----ea~~~~~~~~~~ni~~~l~ 341 (501)
. ...--+.-|+++-|=++--.- .-.++|...+++.|.++..
T Consensus 178 ~-~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~ 223 (254)
T cd00762 178 G-TYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVT 223 (254)
T ss_pred c-eeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCC
Confidence 0 011225679999998763221 2234666666777766553
No 330
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.09 E-value=0.07 Score=53.42 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=53.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecCCH---HH-H---H--hcCCEEEEeccCch
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVYTL---QD-L---L--FQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~sL---de-l---L--~~sDvVil~lPlt~ 242 (501)
.|++|.|+|.|.||..+++.++.+|.+ |++.++...+ +..+++|+..+.+. .+ + . ...|+|+-++...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~- 198 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT- 198 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh-
Confidence 688999999999999999999999997 8888765432 34445555332111 11 1 1 1356665543211
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINva 266 (501)
. .+ ...++.++++..+|.++
T Consensus 199 ~---~~-~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 A---AV-RACLESLDVGGTAVLAG 218 (280)
T ss_pred H---HH-HHHHHHhcCCCEEEEec
Confidence 1 11 23455666666666664
No 331
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.08 E-value=0.12 Score=52.72 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=67.8
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC-------chhhhhcCceecCCHHHHHhcCCEEEEeccCch
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP-------DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~-------~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
.+|+..||+|+|+ |.||..+||.|.+.+.+....-|... .......+-..+.+++..+.+.|+++-....
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~-- 240 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM-- 240 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec--
Confidence 5799999999996 99999999999998887665543211 1112233444445777666666666554432
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
.+-.+|+.+ .+||++++||-++..=||+.
T Consensus 241 ~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 241 PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCceechh---hccCCeEEEcCCcCcccccc
Confidence 234566654 47999999999998766664
No 332
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.06 E-value=0.075 Score=55.68 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=65.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC----------CCEEE-EECCCC--------Cchh----hhhcCc-e------ecCCHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF----------GFNVI-FYDPYL--------PDGI----EKSLGL-T------RVYTLQ 225 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af----------G~~Vi-~~dr~~--------~~~~----~~~~gv-~------~~~sLd 225 (501)
.+|+|+|+|.||+.+++.+... +++|. ++|++. ..+. ....+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998754 56754 456431 1110 011111 1 123788
Q ss_pred HHHh--cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCce
Q psy7383 226 DLLF--QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIR 286 (501)
Q Consensus 226 elL~--~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~ 286 (501)
+++. +.|+|+.++|....+...--.-..+.|+.|.-+|-...+.+ ...+.|.++.++..+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8884 67999999885433222111223455566766665443333 2567788888877664
No 333
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.01 E-value=0.055 Score=50.18 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=56.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc---
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--- 249 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--- 249 (501)
..+++|++||+= +.++++|+..+.+|.++|+++........++ .....++++++||+|++.-. -++|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~l~~aD~viiTGs------TlvN~Ti 78 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDV-PDEDAEEILPWADVVIITGS------TLVNGTI 78 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-E-EGGGHHHHGGG-SEEEEECH------HCCTTTH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcC-CHHHHHHHHccCCEEEEEee------eeecCCH
Confidence 578999999961 2378888888999999998764322222222 23457889999999998642 2333
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy7383 250 EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaR 267 (501)
.+.|+..+++..+|=++-
T Consensus 79 ~~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 79 DDILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHHTTTSSEEEEESC
T ss_pred HHHHHhCccCCeEEEEec
Confidence 467777887777766654
No 334
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.00 E-value=0.042 Score=50.39 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=47.0
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCC
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK 257 (501)
+-|+|.|.+++++++.++.+|++|+++|++... +..++-+. +.+. ..+. +.+ .+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-----------------~~~~~~~~-~~~~----~~~~--~~~-~~~ 55 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-----------------FPEADEVI-CIPP----DDIL--EDL-EID 55 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC------------------TTSSEEE-CSHH----HHHH--HHC--S-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-----------------cCCCCccE-ecCh----HHHH--hcc-CCC
Confidence 468999999999999999999999999976321 11333322 2211 1110 111 355
Q ss_pred CCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 258 PGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 258 ~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+++.+| +.++.-.|.+.|.++|++
T Consensus 56 ~~t~Vv-~th~h~~D~~~L~~~l~~ 79 (136)
T PF13478_consen 56 PNTAVV-MTHDHELDAEALEAALAS 79 (136)
T ss_dssp TT-EEE---S-CCCHHHHHHHHTTS
T ss_pred CCeEEE-EcCCchhHHHHHHHHHcC
Confidence 666666 778888888888888777
No 335
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.053 Score=59.05 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh----hhhcCceec--CCHHHHHhcCCEEEEeccCc---hh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI----EKSLGLTRV--YTLQDLLFQSDCVSLHCTLN---EH 243 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~----~~~~gv~~~--~sLdelL~~sDvVil~lPlt---~~ 243 (501)
+.||+|+|+|+|.-|.++|+.|+..|++|+++|....... ....++... ...++.+.++|+||..--.. +.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999996432111 111122211 11245677899988753222 21
Q ss_pred h-------hhcccHHHH--hc-CC-----CCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 244 N-------HHLINEFTI--KQ-MR-----PGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 244 T-------~~lI~~~~l--~~-MK-----~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
. ..++.+-.| .. ++ ...+-|--+.|+--...-|...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 114544333 33 32 2356666677887777777777775
No 336
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.93 E-value=0.084 Score=58.60 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=34.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++.+|++.|+|.|.+|++++..|...|++|++++|+.
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4789999999999999999999999999999999864
No 337
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.93 E-value=0.068 Score=60.42 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHHHH----HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQDL----LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLdel----L~~sDvVil~lPlt~~T~ 245 (501)
..+|-|+|+|++|+.+++.|.+.|.++++.|.+.+. +..++.|...+ .+.+-+ +.++|.|++++...+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999977543 22334454322 122222 558999999987655554
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
.+ ....+.+.|+..+|--+
T Consensus 480 ~i--~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QL--VELVKEHFPHLQIIARA 498 (621)
T ss_pred HH--HHHHHHhCCCCeEEEEE
Confidence 44 34555556665555433
No 338
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.91 E-value=0.64 Score=48.89 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC--C-chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL--P-DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~--~-~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|++|++||-+ ++.++++..+..+|++|.+..|.. . ... .+..| +....++++.++++|+|..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999975 789999999999999999988753 1 111 12224 444578999999999998753
Q ss_pred c----Cch----h-----hhhcccHHHHhcC-CCCcEEEEcCC
Q psy7383 239 T----LNE----H-----NHHLINEFTIKQM-RPGAFLVNTAR 267 (501)
Q Consensus 239 P----lt~----~-----T~~lI~~~~l~~M-K~gAilINvaR 267 (501)
= ... + -..-++++.++.. |++++|.-+.-
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP 276 (334)
T PRK12562 234 WVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP 276 (334)
T ss_pred ccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence 1 000 0 1123577777774 67777776643
No 339
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.89 E-value=0.086 Score=54.61 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=56.8
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCCEEE-EECCCCCc---hhhhhcCcee-cCCHHHHHh-----cCCEEEEeccCchh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGFNVI-FYDPYLPD---GIEKSLGLTR-VYTLQDLLF-----QSDCVSLHCTLNEH 243 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~~Vi-~~dr~~~~---~~~~~~gv~~-~~sLdelL~-----~sDvVil~lPlt~~ 243 (501)
..+|||||+|.||+..+..+.. -++++. ++|+.... ...+++|+.. ..+.++++. +.|+|+.+.|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 3579999999999997766654 467765 46665432 2345577764 357899985 578899988732
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
.|. +-.....+.|..+|+-+
T Consensus 82 -~H~--e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 -AHV--RHAAKLREAGIRAIDLT 101 (302)
T ss_pred -HHH--HHHHHHHHcCCeEEECC
Confidence 221 12223346677777765
No 340
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.89 E-value=0.12 Score=49.69 Aligned_cols=91 Identities=29% Similarity=0.289 Sum_probs=58.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CHHH-H----HhcCCEEEEeccCch
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TLQD-L----LFQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sLde-l----L~~sDvVil~lPlt~ 242 (501)
.|++|.|+|.|.+|+.+++.++..|.+|++.++.... ...+..+...+. +..+ + -...|+|+.++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~- 212 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP- 212 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH-
Confidence 5789999999999999999999999999999876422 222223322110 1111 1 13568877765521
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
..-...++.|+++..+|+++...
T Consensus 213 ----~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 ----ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ----HHHHHHHHhcccCCEEEEEccCC
Confidence 12244567778888888777653
No 341
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.87 E-value=0.35 Score=52.06 Aligned_cols=184 Identities=21% Similarity=0.136 Sum_probs=118.9
Q ss_pred hcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHH
Q psy7383 113 ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192 (501)
Q Consensus 113 ~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~ 192 (501)
+..|+|.|.. - .-+|--+++-+|+.+|-. | +.|+..+|.|.|.|.-|-.+++
T Consensus 165 ~~~IPvFhDD-q--qGTaiv~lA~llnalk~~---------g----------------k~l~d~kiv~~GAGAAgiaia~ 216 (432)
T COG0281 165 RMNIPVFHDD-Q--QGTAIVTLAALLNALKLT---------G----------------KKLKDQKIVINGAGAAGIAIAD 216 (432)
T ss_pred cCCCCccccc-c--cHHHHHHHHHHHHHHHHh---------C----------------CCccceEEEEeCCcHHHHHHHH
Confidence 4567777763 2 235666777888877643 1 3488999999999999999999
Q ss_pred HHHhCCC---EEEEECCCCC--chh----hhhcCce-------ecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcC
Q psy7383 193 RAKAFGF---NVIFYDPYLP--DGI----EKSLGLT-------RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQM 256 (501)
Q Consensus 193 ~L~afG~---~Vi~~dr~~~--~~~----~~~~gv~-------~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~M 256 (501)
.+.+.|+ +|+++|++-- ++. ....... .... ++.+..+|+++-+- ..++|.++.++.|
T Consensus 217 ~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~M 290 (432)
T COG0281 217 LLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEM 290 (432)
T ss_pred HHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHh
Confidence 9999998 5999997621 110 0000000 0111 45788999987642 2399999999999
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCC-----cHHHHHHHHH
Q psy7383 257 RPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY-----SEASCTELRE 330 (501)
Q Consensus 257 K~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~-----T~ea~~~~~~ 330 (501)
.+..++.=++....--....+.....+ .|.+ ..-|..+ - +.-|+++-|-+.-- ...-.++|..
T Consensus 291 a~~PiIfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd~P----n-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~ 359 (432)
T COG0281 291 AKHPIIFALANPTPEITPEDAKEWGDGAAIVA------TGRSDYP----N-QVNNVLIFPGIFRGALDVRAKTITDEMKI 359 (432)
T ss_pred ccCCEEeecCCCCccCCHHHHhhcCCCCEEEE------eCCCCCc----c-cccceeEcchhhhhhHhhccccCCHHHHH
Confidence 999999999887642222222222222 3432 3333322 2 77899999998732 2223356777
Q ss_pred HHHHHHHHHHh
Q psy7383 331 MAASEIRRAIV 341 (501)
Q Consensus 331 ~~~~ni~~~l~ 341 (501)
.+++.|.++..
T Consensus 360 AAa~AiA~~~~ 370 (432)
T COG0281 360 AAAEAIADLAR 370 (432)
T ss_pred HHHHHHHhhcc
Confidence 77777777654
No 342
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.86 E-value=0.15 Score=54.57 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=69.7
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------hh-hcCceec--CCHHHHHhcCCEEEEeccC---chhh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------EK-SLGLTRV--YTLQDLLFQSDCVSLHCTL---NEHN 244 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------~~-~~gv~~~--~sLdelL~~sDvVil~lPl---t~~T 244 (501)
++.|||+|.+|.++|+.|+..|++|.++|....... .+ ..|++.. .+ .+.+.++|+|+..--. +++-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999999999997643211 11 2355432 13 4557889988775322 2221
Q ss_pred h-------hcccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 H-------HLINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 ~-------~lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
. .++.+ +++ ..++...+-|.-+.|+--...-|...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 12333 232 3344456667777899888887778887644
No 343
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.82 E-value=0.06 Score=57.20 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh-------h---------------hcC----cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE-------K---------------SLG----LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~-------~---------------~~g----v~~- 220 (501)
..|++++|.|||+|.+|..+++.|...|. ++..+|...-+ .+. . +.+ ++.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 46999999999999999999999999997 78888754200 000 0 000 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
+ .+++++++++|+|+.|+ .+-+++.+||+...+.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~~ 155 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEIT 155 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1 13456888899886654 5677888887655444
No 344
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.067 Score=57.55 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=68.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh---hhh--cCceecC--CHHHHHhcCCEEEEec--cC-chh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKS--LGLTRVY--TLQDLLFQSDCVSLHC--TL-NEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~--~gv~~~~--sLdelL~~sDvVil~l--Pl-t~~ 243 (501)
.+-+|.|||+|.+|.++|+.|+..|++|.++|....... .+. .|+.... .-.+.+.++|+||..= |. .++
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 345799999999999999999999999999997643211 112 2554321 1234567899887653 21 221
Q ss_pred hh-------hcccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 244 NH-------HLINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 244 T~-------~lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
-+ .++.+ +++ ..++...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 13332 333 33444456666677887777777777775
No 345
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.70 E-value=0.069 Score=56.32 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=32.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46999999999999999999999999987 57777754
No 346
>PRK05086 malate dehydrogenase; Provisional
Probab=94.70 E-value=0.11 Score=53.80 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=57.7
Q ss_pred CeEEeecc-chHHHHHHHHHH---hCCCEEEEECCCCCc-----hhhh-h--cCcee--cCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAK---AFGFNVIFYDPYLPD-----GIEK-S--LGLTR--VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~---afG~~Vi~~dr~~~~-----~~~~-~--~gv~~--~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||. |.||+.+|..+. ..+.++..+|+.... +... . ..+.. ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998874 355688999976432 1111 0 01111 235567889999999987641
Q ss_pred hh---hhh-c------ccHH---HHhcCCCCcEEEEcCCC
Q psy7383 242 EH---NHH-L------INEF---TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ~~---T~~-l------I~~~---~l~~MK~gAilINvaRG 268 (501)
.. ++. + +-.+ .+....+.+++|+++-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 11 111 1 1122 33334578899999775
No 347
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.69 E-value=0.058 Score=55.11 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=49.2
Q ss_pred CeEEeeccchHHH-HHHHHHHhCC--CE-EEEECCCCCc--hhhhhcCce-ecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAFG--FN-VIFYDPYLPD--GIEKSLGLT-RVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~afG--~~-Vi~~dr~~~~--~~~~~~gv~-~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+|.|++ ..+..++..+ ++ |.++|++... ...+.+++. .+.+++++|+. .|+|++++|..
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 5799999997774 5888888876 34 5567887643 345567764 45689999986 59999999954
No 348
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.68 E-value=0.072 Score=57.99 Aligned_cols=91 Identities=14% Similarity=0.021 Sum_probs=62.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCceec--CCHHHHHhcCCEEEEeccCchhhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.+|+|++|.|||-|.++..=++.|..+|++|+++.+...++.. ....++.. .-.++.+..+++|+.++...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 4699999999999999999899999999999999987654432 11112111 112456788998887754332
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
+|++....++...++||++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 4555555555556666653
No 349
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.67 E-value=0.11 Score=50.44 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=33.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
+.|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46999999999999999999999999998 48888865
No 350
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.66 E-value=0.052 Score=53.88 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=59.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh---hcCcee---cCCHHHHHhcCCEEEEeccCchhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK---SLGLTR---VYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~---~~gv~~---~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++++|.|||-|.++..=++.|..+|++|+++.+...++... ...++. ... .+.+..+++|+.++..
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~-~~dl~g~~LViaATdD---- 95 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD-KEFIKDKHLIVIATDD---- 95 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC-hHHhCCCcEEEECCCC----
Confidence 35789999999999999998999999999999999887544321 111211 112 2346788888877542
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
.-+|+...+..+.--++||+
T Consensus 96 -~~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 96 -EKLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred -HHHHHHHHHHHHHcCCeEEE
Confidence 22455555555554455664
No 351
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.65 E-value=0.1 Score=58.96 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=74.4
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCC-EEEE
Q psy7383 125 GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIF 203 (501)
Q Consensus 125 ~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~ 203 (501)
.....||.++-|=|-|+| |..-++. +...|++.+|.|||+|.+|..+|+.|.+.|. +++.
T Consensus 307 dP~~la~~avdlnlkLmk-------------WRllP~l------~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~Itl 367 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK-------------WRLHPDL------QLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITF 367 (664)
T ss_pred CHHHHHHHHHHHHHHHHh-------------hhcCChh------hHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 456677777766555543 3322211 1245899999999999999999999999998 4666
Q ss_pred ECCCC------------C-chh----------h----hhc-------Cce-e-------c------------CCHHHHHh
Q psy7383 204 YDPYL------------P-DGI----------E----KSL-------GLT-R-------V------------YTLQDLLF 229 (501)
Q Consensus 204 ~dr~~------------~-~~~----------~----~~~-------gv~-~-------~------------~sLdelL~ 229 (501)
+|... . .+. + ++. ++. . + ..++++++
T Consensus 368 VD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~ 447 (664)
T TIGR01381 368 VDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIK 447 (664)
T ss_pred EcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHh
Confidence 66321 0 000 0 000 000 1 1 12567899
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
++|+|+.++ .+.++|.+++..-... +..+|+.+
T Consensus 448 ~~DvV~d~t-Dn~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 448 DHDVVFLLL-DSREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred hCCEEEECC-CCHHHHHHHHHHHHHh---CCCEEEEE
Confidence 999998876 6888999887655443 44566554
No 352
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.64 E-value=0.25 Score=44.67 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=28.8
Q ss_pred eEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
+|.|||+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 699998653
No 353
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.61 E-value=0.097 Score=53.87 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=62.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHH-HHhcCCEEEEeccCchhhhhcccHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQD-LLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLde-lL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|.+|.|.|.|.+|..+++.++.+|++|++.+++..+ +..+++|+..+.+..+ .-...|+++.+.... + . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 4789999999999999999999999999998876543 5566777654422111 112457766654422 1 2 246
Q ss_pred HHhcCCCCcEEEEcCC
Q psy7383 252 TIKQMRPGAFLVNTAR 267 (501)
Q Consensus 252 ~l~~MK~gAilINvaR 267 (501)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788999999988774
No 354
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.61 E-value=0.094 Score=49.75 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred eEEeeccchHHHHHHHHHHhCCCE-EEEECCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFN-VIFYDPY 207 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~ 207 (501)
+|+|||+|.+|..+++.|...|.. +..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999984 8888865
No 355
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.56 E-value=0.1 Score=56.15 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=70.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h--hhh--cCceecC-C-HHHHHhcCCEEEEeccCch---
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I--EKS--LGLTRVY-T-LQDLLFQSDCVSLHCTLNE--- 242 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~--~~~--~gv~~~~-s-LdelL~~sDvVil~lPlt~--- 242 (501)
+.+++|.|+|.|.+|.++|+.|...|++|.++|...... . .+. .|+.... . .++++.++|+|+..--..+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999999764321 1 111 2544221 1 2345678999987643322
Q ss_pred hhhh-------ccc-HHHHhc-CC---CCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 243 HNHH-------LIN-EFTIKQ-MR---PGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 243 ~T~~-------lI~-~~~l~~-MK---~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
..+. ++. .+++.. ++ ...+-|--+.|+.-...-|...|+...
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 2111 232 233333 32 245666667788777777777777533
No 356
>PRK12861 malic enzyme; Reviewed
Probab=94.55 E-value=0.3 Score=56.44 Aligned_cols=182 Identities=18% Similarity=0.100 Sum_probs=117.5
Q ss_pred CeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHH
Q psy7383 115 GIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA 194 (501)
Q Consensus 115 GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L 194 (501)
.|+|.|. +.+ -+|--+++-+|+.+|-. | +.|...+|.|.|.|.-|..+|+.+
T Consensus 157 ~ipvf~D-D~q--GTa~v~lA~llnal~~~---------g----------------k~l~d~~iv~~GAGaAg~~ia~~l 208 (764)
T PRK12861 157 KIPVFHD-DQH--GTAITVSAAFINGLKVV---------G----------------KSIKEVKVVTSGAGAAALACLDLL 208 (764)
T ss_pred CCCeecc-ccc--hHHHHHHHHHHHHHHHh---------C----------------CChhHcEEEEECHhHHHHHHHHHH
Confidence 7899987 443 35666778888877743 1 247889999999999999999999
Q ss_pred HhCCC---EEEEECCCC-----Cch---hhhh-c-CceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcE
Q psy7383 195 KAFGF---NVIFYDPYL-----PDG---IEKS-L-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261 (501)
Q Consensus 195 ~afG~---~Vi~~dr~~-----~~~---~~~~-~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAi 261 (501)
...|. +++.+|++- ... ..+. + ......+|.|+++.+|+++=. . +.++|+++.++.|.+..+
T Consensus 209 ~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PI 283 (764)
T PRK12861 209 VDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPL 283 (764)
T ss_pred HHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCE
Confidence 99998 789998542 000 0010 0 001224899999999987653 2 268999999999999999
Q ss_pred EEEcCCCCccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCC-----CcHHHHHHHHHHHHHH
Q psy7383 262 LVNTARGGLVDDDSLAAALKQGR-IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAF-----YSEASCTELREMAASE 335 (501)
Q Consensus 262 lINvaRG~vVde~aL~~aL~~g~-I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg-----~T~ea~~~~~~~~~~n 335 (501)
+.=.|....--..+.+.. ..|+ |.+- .-. +.| -+.-|+++-|=++- ....-.++|...+++.
T Consensus 284 IFaLsNPtpE~~pe~a~~-~~g~aivaT------Grs----~~p-nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~a 351 (764)
T PRK12861 284 ILALANPTPEIFPELAHA-TRDDVVIAT------GRS----DYP-NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHA 351 (764)
T ss_pred EEECCCCCccCCHHHHHh-cCCCEEEEe------CCc----CCC-CccceeeecchhhHHHHHcCCccCCHHHHHHHHHH
Confidence 999998764211122222 2244 4421 111 111 25568888887652 1222334566666666
Q ss_pred HHHHHh
Q psy7383 336 IRRAIV 341 (501)
Q Consensus 336 i~~~l~ 341 (501)
|..+..
T Consensus 352 lA~~~~ 357 (764)
T PRK12861 352 IAGLAE 357 (764)
T ss_pred HHhhCC
Confidence 666554
No 357
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.51 E-value=0.14 Score=52.73 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred CeEEeeccchHHHHHHHHHHh-CCCEEEE-ECCCCCc---hhhhhcCceec-CCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA-FGFNVIF-YDPYLPD---GIEKSLGLTRV-YTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~---~~~~~~gv~~~-~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||.|.||+..+..+.. -++++.+ +|+.... ...++.|+... .+.++++. +.|+|+++.|..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK 75 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH
Confidence 479999999999988766654 4677654 6665532 33555676533 47888886 578899998843
No 358
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.50 E-value=0.13 Score=54.90 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh-cCceec----CCHHH----HHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS-LGLTRV----YTLQD----LLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~-~gv~~~----~sLde----lL~~sDvVil~lPlt 241 (501)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.....- .... .++..+ .+.+. -+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 457899999999999999999999999999998765321 1111 122211 12222 256889988877744
Q ss_pred hhhhhcccHHHHhcCCCCcEEE
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilI 263 (501)
..+++-....+.+....+++
T Consensus 309 --~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 309 --EANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred --HHHHHHHHHHHHhCCCeEEE
Confidence 33444334444454444444
No 359
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.48 E-value=0.034 Score=58.57 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=43.3
Q ss_pred EEeeccchHHHHHHHHHHhCC-C-EEEEECCCCCch--hhhh---cCcee-------cCCHHHHHhcCCEEEEeccCc
Q psy7383 178 LGIVGLGRIGSAVALRAKAFG-F-NVIFYDPYLPDG--IEKS---LGLTR-------VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG-~-~Vi~~dr~~~~~--~~~~---~gv~~-------~~sLdelL~~sDvVil~lPlt 241 (501)
|+|+|.|.+|+.+++.|...+ . +|++.||+.... .... ..++. ..+|+++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999998776 4 899999986542 1111 11111 123677899999999999743
No 360
>PRK08223 hypothetical protein; Validated
Probab=94.47 E-value=0.12 Score=53.22 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDP 206 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr 206 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 46999999999999999999999999987 5666664
No 361
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.45 E-value=0.074 Score=51.05 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.8
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+++++|.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999986 7799999999999999999999864
No 362
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.45 E-value=0.19 Score=56.25 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=32.5
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
-.|++|.|.|. |.||+.+++.|...|++|++++|+..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46788999985 99999999999999999999988753
No 363
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.38 E-value=0.12 Score=52.65 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=44.8
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchh-hhhcCceec-------CCHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKSLGLTRV-------YTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~~gv~~~-------~sLdelL~~sDvVil~l 238 (501)
++|.|.| .|.||+.+++.|...|++|.+.+|+..... ....+++.+ .++.+++..+|+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 4788998 699999999999999999999988743211 112233221 24566788999887653
No 364
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=94.35 E-value=0.23 Score=45.47 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCCEEEEECCC-----CCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 188 SAVALRAKAFGFNVIFYDPY-----LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~-----~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
=..+++|...|++|++=.-. .+.+.-...|+..+.+.+|++++||+|+-.=+.+ .+.+++|++|.++
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 35677888889999986532 1222334467777767779999999998765533 5677889999999
Q ss_pred EEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 263 VNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 263 INvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
|-...-. ....+++.|.+.++...++|....
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 9887654 688999999999999777776543
No 365
>PRK07411 hypothetical protein; Validated
Probab=94.31 E-value=0.098 Score=55.90 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=57.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hh-------hhhcC-------------------cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GI-------EKSLG-------------------LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~-------~~~~g-------------------v~~- 220 (501)
..|+..+|.|||+|.+|..+|+.|...|. +++.+|...-+ .+ ....| ++.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46999999999999999999999999987 57777743210 00 00011 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCC
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~ 258 (501)
+ .+..+++.++|+|+.++ .+.+++.++|+...+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 1 12346788899877664 5667888887666555433
No 366
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.24 E-value=0.28 Score=53.36 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=74.4
Q ss_pred ccCCeEEeecc----chHHHHHHHHHHhCCC--EEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 173 IRGDTLGIVGL----GRIGSAVALRAKAFGF--NVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 173 L~gktVGIVGl----G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++=++|.|||. |++|..+.+.|+..|+ +|+..+++.. .-.|+..+.+++|+-...|++++++|.. .+..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~ 79 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQ 79 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecCHH-HHHH
Confidence 45688999999 8899999999999887 7888887643 2346666668999877889999999943 3344
Q ss_pred cccHHHHhcCCCCcEEE-EcCCCCc-----cCHHHHHHHHHcCCce
Q psy7383 247 LINEFTIKQMRPGAFLV-NTARGGL-----VDDDSLAAALKQGRIR 286 (501)
Q Consensus 247 lI~~~~l~~MK~gAilI-NvaRG~v-----Vde~aL~~aL~~g~I~ 286 (501)
++ ++..+ ..-.+++| .-+-++. ..++.|.+..+++.+.
T Consensus 80 ~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 80 VV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 44 23333 34444444 3333332 2357888888888776
No 367
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.1 Score=51.47 Aligned_cols=38 Identities=29% Similarity=0.207 Sum_probs=33.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+++|++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478899999985 99999999999999999999998753
No 368
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=94.13 E-value=0.19 Score=51.08 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCc---hh---hhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPD---GI---EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~---~~---~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|..||-.+...|++|+..+|+.+. +. ....|++.+++-.+..+.+.+.+|..|..+.|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 567888899999999999998642 21 234688877777788999999999999998888876 68999999999
Q ss_pred EEEEcCCCCccCHHHHHHHH
Q psy7383 261 FLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL 280 (501)
++.|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999885443 444444
No 369
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.12 E-value=0.15 Score=52.01 Aligned_cols=89 Identities=27% Similarity=0.326 Sum_probs=55.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecCC-----HH---HHHh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVYT-----LQ---DLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~s-----Ld---elL~--~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.||..+++.++.+|++ |++.++.... ...+++|+..+.+ .+ ++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 489999999999999999999999999 9998875432 2334445432211 11 1222 356666554311
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. . ....++.++++..+|.++.
T Consensus 243 -~---~-~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 -A---A-RRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -H---H-HHHHHHHhhcCCEEEEEcC
Confidence 1 1 1344566777777776654
No 370
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.10 E-value=0.12 Score=49.97 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=33.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~ 207 (501)
+.|++++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 458999999999999999999999999985 8888855
No 371
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.10 E-value=0.12 Score=52.56 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=44.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcCceecCCHHHH-HhcCCEEEEeccC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLGLTRVYTLQDL-LFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~gv~~~~sLdel-L~~sDvVil~lPl 240 (501)
++++.|+|.|..+++++..|...|+ +|.+++|+..+. +...++... .+++ ...+|+||.+.|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~---~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW---RPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc---hhhcccccCCEEEECCcc
Confidence 4689999999999999999999998 599999986432 222222211 1111 2457888888874
No 372
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.08 E-value=0.23 Score=51.80 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=58.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecC------CHHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVY------TLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~------sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|.|.|.||..+++.++.+|.+|++.+....+ ...+++|+..+. .+.++....|+|+-++- .+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-~~~-- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-AVH-- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-CHH--
Confidence 5889999999999999999999999999887755432 233455653221 12223334687776653 111
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ .+.++.++++..+|.++.
T Consensus 260 -~~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEeCC
Confidence 12 345677888888887764
No 373
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.01 E-value=0.16 Score=52.82 Aligned_cols=60 Identities=27% Similarity=0.488 Sum_probs=42.6
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh-h-cC-ceecCC---HHHHHhcCCEEEE
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-S-LG-LTRVYT---LQDLLFQSDCVSL 236 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~-~g-v~~~~s---LdelL~~sDvVil 236 (501)
||||||-|..|+.+++.++.+|++|+++|......... . .- +....+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 59999999999999999999999999999875321111 1 00 011123 5667888998754
No 374
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.97 E-value=0.21 Score=56.10 Aligned_cols=69 Identities=14% Similarity=0.291 Sum_probs=48.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcC--c-eecCC---HHHHHhcCCEEEEecc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLG--L-TRVYT---LQDLLFQSDCVSLHCT 239 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~g--v-~~~~s---LdelL~~sDvVil~lP 239 (501)
.....|||||||-|..|+.+++.++.+|++|+++|............ + ....+ +.++.+++|+|+....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 34788999999999999999999999999999999865321111000 0 01123 4556788999876544
No 375
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.97 E-value=0.052 Score=49.73 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=58.7
Q ss_pred CeEEeecc-chHHHHHHHHHHh--CCCEEEEECCCCCc--hhhhh-------cC--ceecCCHHHHHhcCCEEEEeccC-
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKA--FGFNVIFYDPYLPD--GIEKS-------LG--LTRVYTLQDLLFQSDCVSLHCTL- 240 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~a--fG~~Vi~~dr~~~~--~~~~~-------~g--v~~~~sLdelL~~sDvVil~lPl- 240 (501)
.+|+|||. |.+|+.+|-.|.. ++-++..+|..... +...+ .. ........+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 9999999999965 45689999987421 11110 11 11122456779999999998743
Q ss_pred -ch-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 241 -NE-HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 241 -t~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde 273 (501)
.+ +++. ++ | .+.+.+..+.+++|.++.. +|.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP--vd~ 123 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP--VDV 123 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS--HHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc--HHH
Confidence 22 1221 11 1 1233444578888888543 653
No 376
>PLN02214 cinnamoyl-CoA reductase
Probab=93.96 E-value=0.21 Score=51.77 Aligned_cols=68 Identities=21% Similarity=0.107 Sum_probs=47.7
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchh---hhhc-----Cce-------ecCCHHHHHhcCCEEE
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKSL-----GLT-------RVYTLQDLLFQSDCVS 235 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~~-----gv~-------~~~sLdelL~~sDvVi 235 (501)
.+++++|.|.|. |.||+.+++.|...|++|.+.+|...... .... .+. ...+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999997 99999999999999999999987643210 0000 111 1123566788899887
Q ss_pred Eecc
Q psy7383 236 LHCT 239 (501)
Q Consensus 236 l~lP 239 (501)
.+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7654
No 377
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.95 E-value=0.27 Score=53.18 Aligned_cols=93 Identities=13% Similarity=0.227 Sum_probs=62.7
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHH-HHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQD-LLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLde-lL~~sDvVil~lP 239 (501)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||.... ...+.++.. .+++ .+..+|+|+++..
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~---~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII---PVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc---cchhhhhcCCCEEEEccC
Confidence 478999999999 467889999999999999999998543 222223322 1222 3678999999876
Q ss_pred CchhhhhcccHHHHh-cCCCCcEEEEcCCCCc
Q psy7383 240 LNEHNHHLINEFTIK-QMRPGAFLVNTARGGL 270 (501)
Q Consensus 240 lt~~T~~lI~~~~l~-~MK~gAilINvaRG~v 270 (501)
.. +-+. ++-+.+. .||...++||+ |+-+
T Consensus 388 h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 HQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 43 3232 4444443 46645688884 6543
No 378
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.19 Score=48.67 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=32.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.++++.|.|. |.||+.+++.|...|++|++++|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67899999996 9999999999999999999988764
No 379
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.87 E-value=0.15 Score=51.94 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=51.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.++++.|+|.|.||...++.++.+|++ |+++|+.... ....... .+..-++.-...|+|+-++... ..+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~----~~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDP----SLI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCH----HHH-HH
Confidence 577899999999999999999999998 5556654321 1111111 1111111112467777654421 111 34
Q ss_pred HHhcCCCCcEEEEcC
Q psy7383 252 TIKQMRPGAFLVNTA 266 (501)
Q Consensus 252 ~l~~MK~gAilINva 266 (501)
.++.|+++..++.++
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 567777777777765
No 380
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.87 E-value=0.71 Score=48.55 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=48.1
Q ss_pred c-cCCeEEeeccc-------hHHHHHHHHHHhCCCEEEEECC-C---CCchh-------hhhcC--ceecCCHHHHHhcC
Q psy7383 173 I-RGDTLGIVGLG-------RIGSAVALRAKAFGFNVIFYDP-Y---LPDGI-------EKSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 173 L-~gktVGIVGlG-------~IG~~iA~~L~afG~~Vi~~dr-~---~~~~~-------~~~~g--v~~~~sLdelL~~s 231 (501)
+ .|+||+|++.| ++.++++..+..||++|.+..| . ..... .+..| +....++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 6 78999776543 7888999999999999999998 3 22221 12223 44457899999999
Q ss_pred CEEEEec
Q psy7383 232 DCVSLHC 238 (501)
Q Consensus 232 DvVil~l 238 (501)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998643
No 381
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.87 E-value=0.45 Score=47.43 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45899999999999999999999998887 68888743
No 382
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.76 E-value=0.2 Score=53.62 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=53.4
Q ss_pred ccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~l 238 (501)
.+|++|+|+|+. .-...+++.|...|.+|.+|||...... .+++...++++++++.||+|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 478999999994 4677999999999999999999854432 447778889999999999998853
No 383
>PRK06128 oxidoreductase; Provisional
Probab=93.74 E-value=0.23 Score=50.24 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=31.5
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
.+.||++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 488999999975 899999999999999999876544
No 384
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=93.72 E-value=0.22 Score=52.54 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=53.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecC---C---HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVY---T---LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~---s---LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|.|.|.||..+++.++.+|++|++.+...+. ...+++|+..+- + +.++....|+|+-++.. +.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~-~~-- 254 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA-EH-- 254 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc-HH--
Confidence 5889999999999999999999999999998765322 233445543221 1 11222235666554421 11
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
.+ ...++.++++..+|.++
T Consensus 255 -~~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 255 -AL-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred -HH-HHHHHhhcCCCEEEEEc
Confidence 11 23455566666666654
No 385
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.69 E-value=0.15 Score=55.39 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=65.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-hhhc-Cceec-CCHHHHHhcCCEEEEeccC---chhh---
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKSL-GLTRV-YTLQDLLFQSDCVSLHCTL---NEHN--- 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~~-gv~~~-~sLdelL~~sDvVil~lPl---t~~T--- 244 (501)
.|++|+|+|+|.-|.++|+.|+. |++|+++|....... .... ..... ....+.+.++|+||..=-. ++..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 57899999999999999999995 999999995432211 1111 00111 1123557789988775321 2211
Q ss_pred ----hhcccHH-HH-hcCCC-CcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 ----HHLINEF-TI-KQMRP-GAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ----~~lI~~~-~l-~~MK~-gAilINvaRG~vVde~aL~~aL~~ 282 (501)
..++.+- ++ ..++. ..+=|--+.|+--...-|...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 1134333 32 33433 345555567887777777777876
No 386
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.13 Score=50.79 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=34.2
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.++.+|++.|.|- |.||+.+++.|...|++|++.+|+.
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999987 8999999999999999999999864
No 387
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.64 E-value=0.18 Score=54.03 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh--hhhcCceecC--CHHHHHhcCCEEEEeccCchhhhh--
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI--EKSLGLTRVY--TLQDLLFQSDCVSLHCTLNEHNHH-- 246 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--~~~~gv~~~~--sLdelL~~sDvVil~lPlt~~T~~-- 246 (501)
+.+++|.|||+|..|++.++.|+..|.+|.++|....... ....|+.... ...+.+...|+||.. |.-+...-
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence 5688999999999999999999999999999996543211 1122543321 123456778876654 43221111
Q ss_pred ---------cccH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 247 ---------LINE-FTIKQ-MRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 247 ---------lI~~-~~l~~-MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++.+ +++.. ++...+-|--+.|+--...-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2332 33333 333345566667887777777777775
No 388
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.62 E-value=0.16 Score=54.19 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=55.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh-------h---------------hcC----cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE-------K---------------SLG----LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~-------~---------------~~g----v~~- 220 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...-+ .+. . +.+ ++.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 45899999999999999999999998887 57787743210 000 0 000 110
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
+ .+.+++++++|+|+.++ .+.+++.++|+...+.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~ 156 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA 156 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1 12356788889887654 5667788887665554
No 389
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.61 E-value=0.14 Score=49.26 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=33.3
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+.++++.|+|. |.||+.+++.|...|++|++.+|+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999985 89999999999999999999998753
No 390
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.60 E-value=0.29 Score=52.94 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=62.7
Q ss_pred CeEEeeccchHHHHHHHHHHhC----------CCEE-EEECCCCCchhh-hhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF----------GFNV-IFYDPYLPDGIE-KSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af----------G~~V-i~~dr~~~~~~~-~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||+|+|.||+.+++.+... +.+| .++|++...... ...+.....++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999999887542 4554 346765432111 1112334468899986 469999887643
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHcCCce
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLV-DDDSLAAALKQGRIR 286 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vV-de~aL~~aL~~g~I~ 286 (501)
.-...+ ..+.|+.|--+|..--.-+. .-+.|.++.++....
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 221211 22445555555543222222 336777887777654
No 391
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.56 E-value=0.21 Score=51.61 Aligned_cols=45 Identities=29% Similarity=0.444 Sum_probs=36.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||..+++.++..|.+|++.+++..+ ...+++|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 4789999999999999999999999999999876432 33344454
No 392
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.55 E-value=0.41 Score=49.92 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCc----hhhhh--c-------CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPD----GIEKS--L-------GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~----~~~~~--~-------gv~~~~sLdelL~~sDvV 234 (501)
++|+|||. |.+|..+|-.|...|. ++..+|..... +.... . .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999976655 79999974321 11100 0 111123445789999999
Q ss_pred EEeccCch---hhhh-cc--cH-------HHHhcCC-CCcEEEEcCCCCccCHHHHH
Q psy7383 235 SLHCTLNE---HNHH-LI--NE-------FTIKQMR-PGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 235 il~lPlt~---~T~~-lI--~~-------~~l~~MK-~gAilINvaRG~vVde~aL~ 277 (501)
+++.-... +|+- ++ |. ..+.... +.+++|+++ ..+|.-..+
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 99865311 1221 11 11 2233334 588999987 456655443
No 393
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.54 E-value=0.44 Score=49.75 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=60.2
Q ss_pred eEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCC--Cchhhhhc-----------CceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYL--PDGIEKSL-----------GLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~--~~~~~~~~-----------gv~~~~sLdelL~~sDvVi 235 (501)
+|+|+|. |.||+.+|..|...+. ++..+|... +....... +........+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999876442 588899865 21110000 1111135668899999999
Q ss_pred EeccC--ch-hhhh--------ccc--HHHHhcC-CCCcEEEEcCCCCccCHHHHH
Q psy7383 236 LHCTL--NE-HNHH--------LIN--EFTIKQM-RPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 236 l~lPl--t~-~T~~--------lI~--~~~l~~M-K~gAilINvaRG~vVde~aL~ 277 (501)
++.-. .+ +|+. ++. ...+... ++++++|.++ ..+|.-..+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 87543 11 2221 110 1233444 5888888886 556655443
No 394
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.53 E-value=0.18 Score=52.72 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=58.9
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHh--CCCEEEEECCCCCchhhhh-------cCceecCC---HHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKA--FGFNVIFYDPYLPDGIEKS-------LGLTRVYT---LQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~a--fG~~Vi~~dr~~~~~~~~~-------~gv~~~~s---LdelL~~sDvVil~lP 239 (501)
++.++|+|+|. |.||..+|..|.. ...++..+|.....+.... ..+....+ ..+.+++||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56779999999 9999999999984 4468999998432221111 11211111 2578999999998765
Q ss_pred Cch---hhh-hccc------HH---HHhcCCCCcEEEEcCCC
Q psy7383 240 LNE---HNH-HLIN------EF---TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~---~T~-~lI~------~~---~l~~MK~gAilINvaRG 268 (501)
... +++ .++. .+ .+..-.+..+++.++-+
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 421 111 1221 12 33334567788887765
No 395
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.46 E-value=0.12 Score=45.23 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred ccchHHHHHHHHHHhC----CCEEEE-ECCC--CCch-hhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcccHH
Q psy7383 182 GLGRIGSAVALRAKAF----GFNVIF-YDPY--LPDG-IEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 182 GlG~IG~~iA~~L~af----G~~Vi~-~dr~--~~~~-~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~~ 251 (501)
|+|.||+.+++.+... +++|.+ +|++ .... .....+.....++++++. +.|+|+=|.... ... +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~-~~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSE-AVA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCH-HHH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCch-HHH----HH
Confidence 8999999999999865 677554 5665 1111 111122345568999998 999999885432 222 23
Q ss_pred HHhcCCCCcEEEEcCCCCcc---CHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLV---DDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vV---de~aL~~aL~~g~I~ 286 (501)
..+.|+.|.-+|-.+-+.+. ..+.|.++.+++...
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGVR 113 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence 44556788889998888887 334555666655543
No 396
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.45 E-value=0.38 Score=50.34 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred eEEeeccchHHHHHHHHHHh--------CCCEEEE-ECCCC----Cchh----h---hhcC-c--eecC--CHHHHH-hc
Q psy7383 177 TLGIVGLGRIGSAVALRAKA--------FGFNVIF-YDPYL----PDGI----E---KSLG-L--TRVY--TLQDLL-FQ 230 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~a--------fG~~Vi~-~dr~~----~~~~----~---~~~g-v--~~~~--sLdelL-~~ 230 (501)
+|+|+|||.+|+.+++.|.. ++.+|.+ +|++. ..+. . ...+ + .... ++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999976 5667554 45442 1110 0 0001 1 0111 466664 46
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLV-DDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vV-de~aL~~aL~~g~I~ 286 (501)
+|+|+=+.+...+-..- -.-..+.|+.|.-+|-..-+.+. ..+.|.++.+++...
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 89999888643210101 12234556778888887777764 567777777776654
No 397
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.44 E-value=0.54 Score=48.91 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=50.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hh-------hhhcC-ceecCCHHHHHhcCCEEEEe
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GI-------EKSLG-LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-------~~~~g-v~~~~sLdelL~~sDvVil~ 237 (501)
+.|+||++||- +++.++++..+..+|++|.+..|..-. .. .+..+ +....++++.++++|+|..-
T Consensus 151 l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 78999999997 789999999999999999999875421 10 11122 44456899999999999874
No 398
>PRK15076 alpha-galactosidase; Provisional
Probab=93.44 E-value=0.12 Score=56.11 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=68.8
Q ss_pred CeEEeeccchHHHHHHH--HH---HhC-CCEEEEECCCCCchh---------hhhcC----ceecCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVAL--RA---KAF-GFNVIFYDPYLPDGI---------EKSLG----LTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~--~L---~af-G~~Vi~~dr~~~~~~---------~~~~g----v~~~~sLdelL~~sDvVil 236 (501)
++|+|||.|.+|...+- .+ .++ +.+|+.+|....... ....+ +....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999955433 22 233 569999997643211 01111 2334577899999999999
Q ss_pred eccCc--h--------------------hhh-------hccc-------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 237 HCTLN--E--------------------HNH-------HLIN-------EFTIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 237 ~lPlt--~--------------------~T~-------~lI~-------~~~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
++-.. . +|. .+-+ .+.++...|+++|||++...=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 98753 1 110 0001 2344455689999999987544555555 33
Q ss_pred HcCCceEEE
Q psy7383 281 KQGRIRAAA 289 (501)
Q Consensus 281 ~~g~I~GAa 289 (501)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 455676644
No 399
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.43 E-value=0.51 Score=48.82 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC--EEEEECCCC--Cch------hhh---hcC----ceecCCHHHHHhcCCEEEEe
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYL--PDG------IEK---SLG----LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~--~~~------~~~---~~g----v~~~~sLdelL~~sDvVil~ 237 (501)
++|+|+|. |.+|..++..|...|. +|+.+|+.. ... ... ..+ +....+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999997 9999999999988876 599999843 111 000 011 1111243 459999999999
Q ss_pred ccCch---hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHH----HHHcCCceEE
Q psy7383 238 CTLNE---HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAA----ALKQGRIRAA 288 (501)
Q Consensus 238 lPlt~---~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~----aL~~g~I~GA 288 (501)
..... +++ .++. ...+....+.+++|+++ ..+|.-..+- -+..+++.|.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence 85311 121 1111 12334445677787776 3455444322 2344556655
No 400
>PRK10206 putative oxidoreductase; Provisional
Probab=93.40 E-value=0.14 Score=53.45 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=43.5
Q ss_pred eEEeeccchHHHH-HHHHHHh--CCCEEE-EECCCCCch-hhhhcC-ceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 177 TLGIVGLGRIGSA-VALRAKA--FGFNVI-FYDPYLPDG-IEKSLG-LTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGlG~IG~~-iA~~L~a--fG~~Vi-~~dr~~~~~-~~~~~g-v~~~~sLdelL~--~sDvVil~lPlt 241 (501)
+|||||+|.|++. .+..+.. -+++|. ++|+..... ..+.++ +..+.+++++|. +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998864 3454433 357775 578764322 223343 444568999996 579999999854
No 401
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.37 E-value=0.15 Score=52.83 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=67.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------------CceecCC----------HHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------------GLTRVYT----------LQD 226 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------------gv~~~~s----------Lde 226 (501)
.....++-++|+|-+|-..+......|+-|..+|-+... +..++. |+....+ +.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999854311 111111 1111111 345
Q ss_pred HHhcCCEEEEec--cCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 227 LLFQSDCVSLHC--TLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 227 lL~~sDvVil~l--Plt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
..++.||||... |.. ..-.|+.++..+.||+|+++||.+
T Consensus 241 ~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEeh
Confidence 678999998753 333 345688999999999999999985
No 402
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=93.36 E-value=0.27 Score=50.21 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=54.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCH------HHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTL------QDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sL------delL~~sDvVil~lPlt~~T~~ 246 (501)
.|.+|.|.|.|.+|+.+++.++.+|++|++.++.... ...+.+++..+.+. +++-...|+|+.+++..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 4678999999999999999999999999999876432 22233443321110 11123456666555421
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
....+.++.++++..+|+++.
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred chHHHHHHHhcCCCEEEEEec
Confidence 112445566666666666653
No 403
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.36 E-value=0.51 Score=51.19 Aligned_cols=111 Identities=22% Similarity=0.141 Sum_probs=70.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc------hhhhhcCceecC-CHHHHHhcCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD------GIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~------~~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T 244 (501)
.+.+++|.|||.|.+|.++|+.|+..|++|.++|..... ...++.|++... .-.++...+|+|++..-..+.+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC
Confidence 477899999999999999999999999999999965421 112234654321 1112445789998876332221
Q ss_pred h--------h--cccH-HHH-hcCCC----CcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 H--------H--LINE-FTI-KQMRP----GAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~--------~--lI~~-~~l-~~MK~----gAilINvaRG~vVde~aL~~aL~~ 282 (501)
. + ++++ +++ ..+.+ ..+-|--+.|+.-...-|...|+.
T Consensus 93 ~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 93 PLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred HHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 1 1 2332 232 33422 245566667887777777777765
No 404
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27 E-value=0.45 Score=51.04 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHH--hcCCEEEEe--ccC-chh---hhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL--FQSDCVSLH--CTL-NEH---NHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL--~~sDvVil~--lPl-t~~---T~~l 247 (501)
++|.|+|+|..|.++|+.|+ .|.+|+++|........+..|+... + ++.+ .++|+|+.. +|. +++ .+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i 77 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNL 77 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHH
Confidence 36899999999999999999 9999999995532221223455442 2 2334 468988765 232 222 1223
Q ss_pred ccHH-HHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 248 INEF-TIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 248 I~~~-~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+.+- ++..+.+..+-|--+.|+.-...-|...|++
T Consensus 78 ~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 78 ISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 3333223356666678887777777777775
No 405
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.26 E-value=0.2 Score=52.46 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=24.8
Q ss_pred eEEeeccchHHHHHHHHHHhCC----CEEEEECC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG----FNVIFYDP 206 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr 206 (501)
+|||+|+|+||+.+.+.|...+ ++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 5899999999999999987653 78777653
No 406
>PRK14851 hypothetical protein; Provisional
Probab=93.16 E-value=0.73 Score=52.85 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=93.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC--chhhh----------------------hcC----cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP--DGIEK----------------------SLG----LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~--~~~~~----------------------~~g----v~~- 220 (501)
..|++++|+|||+|.+|..++..|...|. ++..+|...- ..+.+ +.+ ++.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 45999999999999999999999998887 4666653210 00000 000 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcCC----CCccCHHHHHHHHHcCCceEEEE
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTAR----GGLVDDDSLAAALKQGRIRAAAL 290 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINvaR----G~vVde~aL~~aL~~g~I~GAaL 290 (501)
+ .++++++.++|+|+-++-. +-+++.++++... +.+.-+|..+- |.+. ...-+.+ ..-
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~g~~~-------~~~p~~~--~~~ 186 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYSSAML-------VFTPQGM--GFD 186 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeecccccceEE-------EEcCCCC--CHh
Confidence 1 2356778889988876632 2345566665432 23444555431 1110 0000000 012
Q ss_pred ecCCCCCC-----------------CCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 291 DVHESEPY-----------------NVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 291 DVfe~EPl-----------------~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
|.|+.+|. +. -+...+..+|=++-+-+-.+.-+......++.....+++.|+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~p~~~-~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
T PRK14851 187 DYFNIGGKMPEEQKYLRFAMGLAPRPT-HIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGG 257 (679)
T ss_pred HhccCCCCCChHHHHHHHHhcCCCcch-hhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCe
Confidence 23333332 11 23344666777788888777788888888888888888877644
No 407
>PRK12742 oxidoreductase; Provisional
Probab=93.11 E-value=0.35 Score=46.29 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=31.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
.+.+|++.|.|. |.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 377899999985 899999999999999999877553
No 408
>PRK07877 hypothetical protein; Provisional
Probab=93.03 E-value=0.17 Score=58.27 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=57.9
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCC------Cch-------------hhh----hc----Cceec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYL------PDG-------------IEK----SL----GLTRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~------~~~-------------~~~----~~----gv~~~ 221 (501)
..|++++|+|||+| +|+.+|..|...|. +++.+|... ... ..+ +. .++.+
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999 99999999998884 777776321 000 000 00 11111
Q ss_pred ------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 222 ------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 222 ------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
.++++++.++|+|+-|+ .+-+++.++|+...++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEEC-DSLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 25778899999998876 4678999998766655
No 409
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.02 E-value=0.38 Score=49.64 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCc-hhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI 248 (501)
.|.+|.|+|.|.||..+++.++. +| .+|++.|++..+ +..+..+... ..+++.. ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 47899999999999999998886 54 689999976533 2333333221 2233322 368887766421 011122
Q ss_pred cHHHHhcCCCCcEEEEcC
Q psy7383 249 NEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 249 ~~~~l~~MK~gAilINva 266 (501)
.+.++.++++..+|.++
T Consensus 240 -~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred -HHHHHhCcCCcEEEEEe
Confidence 35677888888888775
No 410
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.00 E-value=0.28 Score=49.49 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=31.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|.|.| .|.||+.+++.|...|++|+++++..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 368999999 79999999999999999999887654
No 411
>PLN00106 malate dehydrogenase
Probab=92.96 E-value=0.24 Score=51.75 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=61.5
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCC--CEEEEECCCCCchhhhh-------cCcee---cCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFG--FNVIFYDPYLPDGIEKS-------LGLTR---VYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~~~-------~gv~~---~~sLdelL~~sDvVil~lP 239 (501)
...+||+|+|. |++|..+|..|...+ -++..+|.....+.... ..+.. ..++.+.+++||+|+++.-
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 34579999999 999999999998544 48999997652221111 11111 1244688999999999865
Q ss_pred Cch---hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCC
Q psy7383 240 LNE---HNHH-LI--N-------EFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 240 lt~---~T~~-lI--~-------~~~l~~MK~gAilINvaRG~ 269 (501)
... +++. ++ | .+.+....+.+++|+++---
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 311 1221 11 1 12334445889999998753
No 412
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.95 E-value=0.16 Score=49.10 Aligned_cols=64 Identities=22% Similarity=0.145 Sum_probs=48.0
Q ss_pred EEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchh---hhhcCceec-------CCHHHHHhcCCEEEEeccCc
Q psy7383 178 LGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKSLGLTRV-------YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 178 VGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~~gv~~~-------~sLdelL~~sDvVil~lPlt 241 (501)
|.|+|. |.+|+.+++.|...+++|.+.-|..+... .+..|++.+ .+|.++++.+|.|+++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578885 99999999999999999999988764322 233454422 24566799999999999843
No 413
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.93 E-value=0.6 Score=50.25 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=67.9
Q ss_pred ccC-CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCchhh--hhcCceecCC--HHHHHhcCCEEEEeccC---ch
Q psy7383 173 IRG-DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPDGIE--KSLGLTRVYT--LQDLLFQSDCVSLHCTL---NE 242 (501)
Q Consensus 173 L~g-ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~~~~--~~~gv~~~~s--LdelL~~sDvVil~lPl---t~ 242 (501)
+.+ ++|.|||+|.+|++.++.|... |++|.++|........ ...|++.... -.+.+.++|+|+..--. .+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 556 7899999999999999999887 6899999965432111 1125543211 23446789988765322 22
Q ss_pred hhh-------hcccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 243 HNH-------HLINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 243 ~T~-------~lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+.+ .++.+ +++ ..++...+-|--+-|+.-...-|...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 13322 333 33454455666677887777777777775
No 414
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=92.86 E-value=0.56 Score=50.41 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=49.8
Q ss_pred cccCCeEEeecc-----c---hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcC
Q psy7383 172 RIRGDTLGIVGL-----G---RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 172 ~L~gktVGIVGl-----G---~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~s 231 (501)
.+.|+||+|+|- | ++.++++..+..+|++|.+..|.. .+.. .+..| +....++++.++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 566899999999999999998763 1221 12234 34457899999999
Q ss_pred CEEEEe
Q psy7383 232 DCVSLH 237 (501)
Q Consensus 232 DvVil~ 237 (501)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999875
No 415
>PLN02740 Alcohol dehydrogenase-like
Probab=92.82 E-value=0.4 Score=50.33 Aligned_cols=45 Identities=36% Similarity=0.471 Sum_probs=36.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|++|.|+|.|.||..+++.++.+|. +|++.++.... +..+++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999999 69988876432 33444554
No 416
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.81 E-value=0.34 Score=50.54 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CH-HHHH---h-cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TL-QDLL---F-QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sL-delL---~-~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.||..+++.++..|+ +|++.++...+ +..+++|+..+. ++ +++. . ..|+|+-++..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~- 269 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGS- 269 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCC-
Confidence 47899999999999999999999999 69998876432 344555553221 11 1111 1 36777766532
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+++ + ...++.++++..+|.++-
T Consensus 270 ~~~---~-~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 270 VPA---L-ETAYEITRRGGTTVTAGL 291 (371)
T ss_pred hHH---H-HHHHHHHhcCCEEEEEcc
Confidence 111 1 345667777877777653
No 417
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.75 E-value=0.36 Score=48.10 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=44.2
Q ss_pred eEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhh-----hcCceecCCHHHHH------hc-CCEEEEeccCc
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-----SLGLTRVYTLQDLL------FQ-SDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-----~~gv~~~~sLdelL------~~-sDvVil~lPlt 241 (501)
+|.|+|. |.||+.+++.|...|++|.+..|+....... ...+...+++.+++ .. +|.|+++.+..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 3677776 9999999999999999999999876422110 11111123455566 45 89999887753
No 418
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.70 E-value=0.33 Score=50.45 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=60.1
Q ss_pred eEEeecc-chHHHHHHHHHHhCCC--EEEEECCCCCchhhh--hc-----Cceec--C-CHHHHHhcCCEEEEeccCch-
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYLPDGIEK--SL-----GLTRV--Y-TLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~--~~-----gv~~~--~-sLdelL~~sDvVil~lPlt~- 242 (501)
||+|||. |.+|..+|-.|...+. ++..+|.....+... .. .+... . ++.+.+++||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999876554 899999765222111 11 11111 1 24678999999999876421
Q ss_pred --hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 243 --HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 243 --~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde 273 (501)
+++ .++. .+.+..-.+++++|+++-. +|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP--vDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP--VNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc--hhh
Confidence 111 1221 1234445789999999765 554
No 419
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.69 E-value=0.5 Score=47.62 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=58.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-----------CEEEEECCCCCc--hhh------------------hh----cCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-----------FNVIFYDPYLPD--GIE------------------KS----LGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-----------~~Vi~~dr~~~~--~~~------------------~~----~gv 218 (501)
+..+|.|||+|.+|..+++.|...| .+++++|...-+ .+. +. .++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 5689999999999999999998753 388999853210 000 00 111
Q ss_pred --eec---CCHHHHHhcCCEEEEeccCchhhhhcccHHHHh--cCCCCcEEEEcCC
Q psy7383 219 --TRV---YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK--QMRPGAFLVNTAR 267 (501)
Q Consensus 219 --~~~---~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~--~MK~gAilINvaR 267 (501)
+.. .+.++++.++|+|+.|+ .+-+++..|++...+ .| ..++|+++.
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~~~~~--~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEGGYSG--YAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHHhccc--ccceecccC
Confidence 110 01134567789888876 566788888776655 23 357788775
No 420
>PRK06153 hypothetical protein; Provisional
Probab=92.69 E-value=0.41 Score=51.30 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDP 206 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr 206 (501)
..|++++|+|||+|.+|..++..|...|. +++.+|.
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 46899999999999999999999999987 6888874
No 421
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.67 E-value=0.37 Score=48.95 Aligned_cols=88 Identities=23% Similarity=0.195 Sum_probs=57.4
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec------CCHHHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------YTLQDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------~sLdelL~-----~sDvVil~lPl 240 (501)
.|.+|.|.| .|.+|+.+++.++.+|++|++.+++... +..+++|++.+ .++.+.+. ..|+|+-++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 578999999 5999999999999999999988765422 33344554321 12222221 3567665543
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .. + ...++.++++..+|.++.
T Consensus 217 ~---~~-~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 G---EF-S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred H---HH-H-HHHHHHhCcCcEEEEecc
Confidence 1 11 2 456777888888887764
No 422
>PLN02602 lactate dehydrogenase
Probab=92.66 E-value=0.3 Score=51.65 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=57.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCch--hhh----h---cC-ceec--CCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDG--IEK----S---LG-LTRV--YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~--~~~----~---~g-v~~~--~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.+|..+|-.|...+. ++..+|...... ... . .+ .... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999976665 799999865321 111 0 11 1111 233 4489999999985431
Q ss_pred ---hhhh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q psy7383 242 ---EHNH-HLI--N-------EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ---~~T~-~lI--~-------~~~l~~MK~gAilINvaR 267 (501)
.+|+ .++ | .+.+....+.+++|+++-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1223 111 1 223444568899999984
No 423
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.63 E-value=0.48 Score=49.63 Aligned_cols=90 Identities=26% Similarity=0.257 Sum_probs=61.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhh-cCceecCCH-H--------HHH--hcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKS-LGLTRVYTL-Q--------DLL--FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~-~gv~~~~sL-d--------elL--~~sDvVil~lP 239 (501)
.+.+|.|+|.|.||...+..++.+|. +|++.|++..+ +.+++ .+...+.+. + ++. ..+|+++-++-
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 34499999999999999999999996 67788877543 44444 444322211 1 222 24899998876
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
++. . -.+.++.++++..++.++=.
T Consensus 248 -~~~---~-~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 -SPP---A-LDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -CHH---H-HHHHHHHhcCCCEEEEEecc
Confidence 222 1 24677888999888888754
No 424
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.60 E-value=0.27 Score=51.31 Aligned_cols=96 Identities=8% Similarity=0.052 Sum_probs=58.9
Q ss_pred eEEeecc-chHHHHHHHHHHhCC-------CEEEEECCCCCch--hhhhc-----------CceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFG-------FNVIFYDPYLPDG--IEKSL-----------GLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG-------~~Vi~~dr~~~~~--~~~~~-----------gv~~~~sLdelL~~sDvVi 235 (501)
+|+|+|. |.+|+.++..|...+ .+|..+|+..... ..... .+....++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999998744 4899999854211 11010 1111245668899999998
Q ss_pred EeccCch---hhhh-cc--cH-------HHHhcC-CCCcEEEEcCCCCccCHH
Q psy7383 236 LHCTLNE---HNHH-LI--NE-------FTIKQM-RPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 236 l~lPlt~---~T~~-lI--~~-------~~l~~M-K~gAilINvaRG~vVde~ 274 (501)
.+.-... +++. ++ |. ..+... ++++++|.++- .+|.-
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 134 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN--PANTN 134 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC--cHHHH
Confidence 8765421 1211 11 21 233334 57888998873 45443
No 425
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.46 E-value=0.27 Score=49.73 Aligned_cols=91 Identities=23% Similarity=0.211 Sum_probs=57.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecC-----CHH--HH--HhcCCEEEEeccCch
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVY-----TLQ--DL--LFQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~-----sLd--el--L~~sDvVil~lPlt~ 242 (501)
.|.+|.|+|.|.+|+.+++.+++.|++ |++.+++... ...+..++..+. +.. .. -...|+++.++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~- 237 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP- 237 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence 578999999999999999999999998 7888765432 222233332110 111 11 13467877665321
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
....+.++.|+++..+|+++...
T Consensus 238 ----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 ----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred ----HHHHHHHHHHhcCCEEEEEecCC
Confidence 12245567778888888877643
No 426
>PRK06182 short chain dehydrogenase; Validated
Probab=92.38 E-value=0.28 Score=48.50 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=31.5
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.++++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4688999985 89999999999999999999988643
No 427
>PRK04148 hypothetical protein; Provisional
Probab=92.34 E-value=0.26 Score=45.30 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=46.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-C----CHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-Y----TLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-~----sLdelL~~sDvVil~lPlt 241 (501)
.+++++.+||+| -|..+|..|+..|++|++.|.+... ...+..+...+ + .--++.+.+|+|-..-|-.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 356889999999 9999999999999999999987542 12222333211 1 1235677888877666533
No 428
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.33 E-value=0.57 Score=47.51 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhC----CC-----
Q psy7383 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAF----GF----- 199 (501)
Q Consensus 129 VAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~af----G~----- 199 (501)
+|--+++-+|+.+|.. | ..|++.+|.|+|.|..|-.+|+.+... |.
T Consensus 4 TaaV~lAgll~Al~~~---------g----------------~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA 58 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT---------G----------------KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEA 58 (255)
T ss_dssp HHHHHHHHHHHHHHHH---------T----------------S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHH
T ss_pred hHHHHHHHHHHHHHHh---------C----------------CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHH
Confidence 4556777788877653 1 248889999999999999999999877 87
Q ss_pred --EEEEECCCC----C-chh-------hhhc-CceecCCHHHHHhcC--CEEEEeccCchhhhhcccHHHHhcCCC---C
Q psy7383 200 --NVIFYDPYL----P-DGI-------EKSL-GLTRVYTLQDLLFQS--DCVSLHCTLNEHNHHLINEFTIKQMRP---G 259 (501)
Q Consensus 200 --~Vi~~dr~~----~-~~~-------~~~~-gv~~~~sLdelL~~s--DvVil~lPlt~~T~~lI~~~~l~~MK~---g 259 (501)
+++.+|++- . ++. .+.. ......+|.|+++.. |+++-+- ...++|+++.++.|.+ .
T Consensus 59 ~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~er 134 (255)
T PF03949_consen 59 RKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNER 134 (255)
T ss_dssp HTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSS
T ss_pred hccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCC
Confidence 488888651 1 111 1110 011123899999999 9987652 2578999999999998 9
Q ss_pred cEEEEcCCCCccCHHHHHHHHHc--CCceEEEEecCCCCCCCCC--CCCCCCCCCeEEecCCCC-----CcHHHHHHHHH
Q psy7383 260 AFLVNTARGGLVDDDSLAAALKQ--GRIRAAALDVHESEPYNVF--QGNLKDAPNILCTPHAAF-----YSEASCTELRE 330 (501)
Q Consensus 260 AilINvaRG~vVde~aL~~aL~~--g~I~GAaLDVfe~EPl~~~--~~pL~~~pNVilTPHiAg-----~T~ea~~~~~~ 330 (501)
.++.=.|...---|-.-.++.+- |+.. +-.=...+|.... ...--+..|+++-|=++- ....-.++|..
T Consensus 135 PIIF~LSNPt~~aE~~peda~~~t~g~ai--~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~ 212 (255)
T PF03949_consen 135 PIIFPLSNPTPKAECTPEDAYEWTDGRAI--FATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFL 212 (255)
T ss_dssp EEEEE-SSSCGGSSS-HHHHHHTTTSEEE--EEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHH
T ss_pred CEEEECCCCCCcccCCHHHHHhhCCceEE--EecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHH
Confidence 99999998766444444444444 3332 1111112221110 011224567777776542 11122356666
Q ss_pred HHHHHHHHHH
Q psy7383 331 MAASEIRRAI 340 (501)
Q Consensus 331 ~~~~ni~~~l 340 (501)
.+++.|.++.
T Consensus 213 aAA~aLA~~v 222 (255)
T PF03949_consen 213 AAAEALADLV 222 (255)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhC
Confidence 6666665554
No 429
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.33 E-value=0.38 Score=49.11 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=53.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CHHHHH---hcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TLQDLL---FQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sLdelL---~~sDvVil~lPlt~~T 244 (501)
.|.+|.|.|.|.+|+.+++.++++|.+|++.++.... +..+++|+..+. ++.+.+ ...|+++-++...
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~--- 239 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNA--- 239 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCch---
Confidence 5789999999999999999999999999998876422 233334432210 111111 2356665433111
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .-...++.++++..+|+++.
T Consensus 240 ~--~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 240 K--AISALVGGLAPRGKLLILGA 260 (333)
T ss_pred H--HHHHHHHHcccCCEEEEEec
Confidence 1 11334566666666666654
No 430
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.27 E-value=0.49 Score=48.98 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=56.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecC-----CH-HHH---Hh--cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVY-----TL-QDL---LF--QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~-----sL-del---L~--~sDvVil~lPl 240 (501)
.|++|.|+|.|.+|+.+++.++.+|.+ |++.++...+ +..+++|...+. +. +++ .. ..|+|+-++-.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 478999999999999999999999995 9888876432 334445543211 11 111 11 35777665431
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+++ + .+.+..++++..+|.++-
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 111 2 235666777777777764
No 431
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=92.27 E-value=0.38 Score=48.61 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=58.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-CC----H-HHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-YT----L-QDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-~s----L-delL~~sDvVil~lPlt~~T~~ 246 (501)
.+.+|.|+|.|.+|+.+++.++.+|++|++.++.... +..+..+...+ .. . .......|+++-++... .
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~--- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSG-A--- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcH-H---
Confidence 4688999999999999999999999999998876432 22233333211 00 1 01123578887665321 1
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
...+.++.|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 22556788888888888864
No 432
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.25 E-value=0.59 Score=44.91 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=31.3
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.++++.|.| .|.||+.+|+.|...|++|+...++.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~ 39 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS 39 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC
Confidence 6789999998 59999999999999999998876543
No 433
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=92.23 E-value=0.4 Score=47.76 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=56.3
Q ss_pred CEEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q psy7383 199 FNVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 199 ~~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL 276 (501)
.+|++|+|+..+. ....+++....+..+++.+||+|+++++ ......++ .+.-..++++.+||.+.-| +..+.|
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl-~~l~~~~~~~~~ivS~~ag--i~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL-SELKSEKGKDKLLISIAAG--VTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH-HHHhhhccCCCEEEEecCC--CCHHHH
Confidence 4789999875431 2234577666788899999999999999 33334333 2222345677899999988 888888
Q ss_pred HHHHHc
Q psy7383 277 AAALKQ 282 (501)
Q Consensus 277 ~~aL~~ 282 (501)
.+.+..
T Consensus 86 ~~~~~~ 91 (245)
T TIGR00112 86 SQLLGG 91 (245)
T ss_pred HHHcCC
Confidence 887754
No 434
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=92.17 E-value=0.47 Score=46.65 Aligned_cols=90 Identities=26% Similarity=0.252 Sum_probs=59.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcC-ceecCCHH-HHH--hcCCEEEEeccCchhhhhc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLG-LTRVYTLQ-DLL--FQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~g-v~~~~sLd-elL--~~sDvVil~lPlt~~T~~l 247 (501)
.|.+|.|.|.|.+|+.+++.++.+|.+ |++.++.... ...+..| ...+.... +.. ...|+|+.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 578999999999999999999999999 9888865432 2333344 11111111 111 24788876654221 1
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q psy7383 248 INEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG 268 (501)
-.+.++.|+++..+++++-.
T Consensus 173 -~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 -LETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -HHHHHHHhcCCcEEEEEecc
Confidence 24567888999999988754
No 435
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=92.11 E-value=0.4 Score=48.80 Aligned_cols=87 Identities=28% Similarity=0.286 Sum_probs=51.9
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecC-----CHHH--HH--hcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVY-----TLQD--LL--FQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~-----sLde--lL--~~sDvVil~lPlt~~ 243 (501)
.|.+|.|+|. |.+|+.+++.++..|++|++.+.....+..+..|+..+. ...+ +. ...|+|+-++..
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~--- 253 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG--- 253 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH---
Confidence 4789999998 999999999999999998887654322333334432111 0111 11 235666554431
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
. .....++.|+++..+|+++
T Consensus 254 -~--~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 254 -P--LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -H--HHHHHHHHhccCCEEEEec
Confidence 1 1234556666666666654
No 436
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=92.08 E-value=0.57 Score=48.69 Aligned_cols=89 Identities=20% Similarity=0.157 Sum_probs=59.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceec-C--C---HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRV-Y--T---LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~-~--s---LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|.+|.|+|.|.+|+.+++.++.+|.+|++.+....+ ...+.+|+..+ . + +.++....|+|+-++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~--- 256 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH--- 256 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH---
Confidence 5789999999999999999999999999888765432 12233554321 1 1 2223334688877664211
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.-...++.++++..+|.++.
T Consensus 257 --~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 257 --PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --HHHHHHHHhccCCEEEEECC
Confidence 11345677888888888874
No 437
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=92.04 E-value=0.81 Score=48.20 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=48.2
Q ss_pred cccCCeEEeecc---chHHHHHHHHHH-hCCCEEEEECCCC---Cchhh---hhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGL---GRIGSAVALRAK-AFGFNVIFYDPYL---PDGIE---KSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGl---G~IG~~iA~~L~-afG~~Vi~~dr~~---~~~~~---~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.+.|+||++||= +++..+++..|. .+|++|.+..|.. +.... +..| ++...+++|.++++|||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 378999999998 578888888765 4599999988753 21211 1223 44557899999999999873
No 438
>PRK08324 short chain dehydrogenase; Validated
Probab=92.04 E-value=0.31 Score=55.54 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=34.5
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..+.||++.|.| .|.||+.+|+.|...|++|++.+++.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~ 456 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE 456 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH
Confidence 357899999999 69999999999999999999999875
No 439
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.03 E-value=0.48 Score=53.80 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=32.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
-.|++|.|||.|..|...|..|+..|++|++|++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36899999999999999999999999999999865
No 440
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.01 E-value=0.17 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
.++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999898 78888865
No 441
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.00 E-value=0.15 Score=49.54 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=43.3
Q ss_pred eEEeeccchHHHHHHHH--HHhCCCEE-EEECCCCCchhhhh---cCceecCCHHHHHh--cCCEEEEeccC
Q psy7383 177 TLGIVGLGRIGSAVALR--AKAFGFNV-IFYDPYLPDGIEKS---LGLTRVYTLQDLLF--QSDCVSLHCTL 240 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~--L~afG~~V-i~~dr~~~~~~~~~---~gv~~~~sLdelL~--~sDvVil~lPl 240 (501)
+|.|||.|+||++++.. .+..||++ .+||-.++. .-.. .-+...++|++.++ +.|+.++|+|.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~-VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK-VGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH-hCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 58999999999999975 35788985 568865432 1111 12333445666677 68899999994
No 442
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.97 E-value=0.37 Score=51.66 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=53.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
+..++-|+|+|.+|+.+++.|+..|.+|.+.|....+ .....+...+ .+ |+++ +++|+.|+++++.+.++.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~-~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLE-HRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhh-hhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 3567999999999999999999999998888864221 1111222111 12 2221 557888888776544443
Q ss_pred hcccHHHHhcCCCCcEEE
Q psy7383 246 HLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilI 263 (501)
.+ ....+.+.++..+|
T Consensus 318 ~i--vL~ar~l~p~~kII 333 (393)
T PRK10537 318 FV--VLAAKEMSSDVKTV 333 (393)
T ss_pred HH--HHHHHHhCCCCcEE
Confidence 33 33455555554333
No 443
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.92 E-value=0.23 Score=51.41 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=55.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhh----c------CceecCCHHHHHhcCCEEEEeccCc-
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKS----L------GLTRVYTLQDLLFQSDCVSLHCTLN- 241 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~----~------gv~~~~sLdelL~~sDvVil~lPlt- 241 (501)
||+|||.|.+|..+|-.|...+. ++..+|..... +.... . .+.....-.+.+++||+|+++.-..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999998876554 79999986432 11110 0 1111112247799999999986531
Q ss_pred -h-hh---hhcc--cH-------HHHhcCCCCcEEEEcCCC
Q psy7383 242 -E-HN---HHLI--NE-------FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 -~-~T---~~lI--~~-------~~l~~MK~gAilINvaRG 268 (501)
+ +| ..++ |. ..+..-.+++++|.++-.
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 23 1222 22 223334577888877643
No 444
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=91.87 E-value=0.86 Score=50.73 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=46.8
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCC-CEEEEECCCCC---chh---hhhcC--ceecCCHHHHHhcCCE
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFG-FNVIFYDPYLP---DGI---EKSLG--LTRVYTLQDLLFQSDC 233 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG-~~Vi~~dr~~~---~~~---~~~~g--v~~~~sLdelL~~sDv 233 (501)
+.|++|++||= +++..+++..|..|| ++|.+..|..- ... .++.| +....++++.++++|+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 78999999998 689999999999998 99999887531 121 11234 4445789999999995
No 445
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.86 E-value=0.52 Score=49.02 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=59.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC--EEEEECCCCCchhh----hh-c--Cceec---CCHHHHHhcCCEEEEeccCc-
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYLPDGIE----KS-L--GLTRV---YTLQDLLFQSDCVSLHCTLN- 241 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~----~~-~--gv~~~---~sLdelL~~sDvVil~lPlt- 241 (501)
++|+|||. |.+|..+|-.|...+. ++..+|.....+.. .. . .+... +++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 47999999 9999999999987774 79999976322211 11 1 12211 12357799999999886541
Q ss_pred -h-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCC
Q psy7383 242 -E-HNHH-LI--N-------EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 -~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG 268 (501)
+ ++|- ++ | .+.+..-.+.+++|+++-.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 1 2222 11 2 1234445689999999875
No 446
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.79 E-value=0.32 Score=50.77 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=58.7
Q ss_pred eEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCch--hhhhcC-----------ceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPDG--IEKSLG-----------LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~~--~~~~~g-----------v~~~~sLdelL~~sDvVi 235 (501)
+|+|||. |.+|..+|..|...+. ++..+|...... ....+. +....+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999986544 588999754321 111110 111114467899999999
Q ss_pred EeccCch---hhhh-cc--c-------HHHHhcC-CCCcEEEEcCCCCccCHHH
Q psy7383 236 LHCTLNE---HNHH-LI--N-------EFTIKQM-RPGAFLVNTARGGLVDDDS 275 (501)
Q Consensus 236 l~lPlt~---~T~~-lI--~-------~~~l~~M-K~gAilINvaRG~vVde~a 275 (501)
++.-... +|+. ++ | ...+... ++.+++|.++ ..+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8765321 1221 11 1 1233444 5788999887 4465554
No 447
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.77 E-value=0.45 Score=49.70 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=51.3
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCC---EEEEECCCCCchhhhhc-Cce-ecCCHH-HHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGF---NVIFYDPYLPDGIEKSL-GLT-RVYTLQ-DLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~---~Vi~~dr~~~~~~~~~~-gv~-~~~sLd-elL~~sDvVil~lPlt~~T~~l 247 (501)
+++|+|+| .|.+|+.+++.|...++ ++.+..+....+....+ +.. .+.+++ +.+.++|+|++++|.. .++.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 36899997 69999999999998665 34555433222111111 111 111222 3357899999998843 22322
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q psy7383 248 INEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaR 267 (501)
. .. .++.|+++|+.+.
T Consensus 80 ~-~~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PK---AAAAGAVVIDNSS 95 (334)
T ss_pred H-HH---HHhCCCEEEECCc
Confidence 2 11 2356889998874
No 448
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.72 E-value=0.56 Score=48.71 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=55.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-hcCceecC------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-SLGLTRVY------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-~~gv~~~~------sLdelL~-----~sDvVil~lP 239 (501)
.|.+|.|.|. |.+|+.+++.++.+|++|++.+++..+ +..+ .+|+..+. ++.+.+. ..|+|+-++-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 5889999999 999999999999999999988765432 2222 35543211 2322222 2566665543
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
. . . -...++.++++..+|.++
T Consensus 238 -~---~-~-~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 238 -G---D-M-LDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -H---H-H-HHHHHHHhccCCEEEEEC
Confidence 1 1 1 145566777777777665
No 449
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.67 E-value=0.2 Score=59.65 Aligned_cols=92 Identities=9% Similarity=0.017 Sum_probs=63.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh--------------------------hhhcC----c----
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI--------------------------EKSLG----L---- 218 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--------------------------~~~~g----v---- 218 (501)
+.-.+|.|+|.|+.|+..++.+..+|++ . .++..-..+ .+..+ +
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 3457899999999999999999998776 2 221100000 00000 0
Q ss_pred ------eecCC-HHHHHhcCCEEEEeccCchhhhhcccHH-HHhcCCCCc----EEEEcC
Q psy7383 219 ------TRVYT-LQDLLFQSDCVSLHCTLNEHNHHLINEF-TIKQMRPGA----FLVNTA 266 (501)
Q Consensus 219 ------~~~~s-LdelL~~sDvVil~lPlt~~T~~lI~~~-~l~~MK~gA----ilINva 266 (501)
.+... +++++..+|+||.++-..+.+-.+|.++ ..+.||+|. +|+|++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00011 3568899999999998788888999888 777899998 888876
No 450
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=91.67 E-value=0.5 Score=49.78 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCC---EEEEEC--CCCCchhhhhcCce-ecCCH-HHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGF---NVIFYD--PYLPDGIEKSLGLT-RVYTL-QDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~---~Vi~~d--r~~~~~~~~~~gv~-~~~sL-delL~~sDvVil~lPlt~~T~ 245 (501)
...+|+||| .|.+|+.+.++|...++ ++.++. ++...... ..+.. .+.++ .+.+.++|+|++++|.. .+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-FEGRDYTVEELTEDSFDGVDIALFSAGGS-ISK 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-ecCceeEEEeCCHHHHcCCCEEEECCCcH-HHH
Confidence 456899997 59999999999988554 333332 22111111 11111 11122 24458999999999854 223
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
.+.. + ..+.|+.+||.+
T Consensus 84 ~~~~-~---~~~~g~~VIDlS 100 (344)
T PLN02383 84 KFGP-I---AVDKGAVVVDNS 100 (344)
T ss_pred HHHH-H---HHhCCCEEEECC
Confidence 3321 1 125689999998
No 451
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.62 E-value=0.66 Score=48.18 Aligned_cols=45 Identities=36% Similarity=0.478 Sum_probs=35.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.+|..+++.++.+|+ +|++.++.... +..+++|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV 233 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 58899999999999999999999999 79999876432 23344443
No 452
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.62 E-value=0.62 Score=48.63 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=35.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||..+++.++.+|. +|++.++...+ +..+++|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA 231 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999999999999999999 79998876432 33344443
No 453
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.61 E-value=0.38 Score=49.85 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.0
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|+|.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 36789999998 59999999999999999999999753
No 454
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=91.54 E-value=0.53 Score=47.38 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=55.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHH--hcCCEEEEeccCchhhhhcccH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLL--FQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL--~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.|.+|.|.|.|.+|+.+++.++.+|.+|++.+.+... +..+++|+....+.++.. ...|+++-++... . . -.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~---~-~-~~ 229 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSP---S-G-LE 229 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCCh---H-H-HH
Confidence 5789999999999999999999999999988765422 233345554332222211 2367776654211 1 1 13
Q ss_pred HHHhcCCCCcEEEEcC
Q psy7383 251 FTIKQMRPGAFLVNTA 266 (501)
Q Consensus 251 ~~l~~MK~gAilINva 266 (501)
..++.++++..+|..+
T Consensus 230 ~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 230 LALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 4456677777776543
No 455
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=91.53 E-value=0.73 Score=47.02 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=58.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC------CHHH----HHh-cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY------TLQD----LLF-QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~------sLde----lL~-~sDvVil~lPlt 241 (501)
.+++|.|.|.|.+|+.+++.++.+|++|++.+++... +..+.+|+..+. ++.+ +.. ..|+++-++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 243 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI- 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence 5789999999999999999999999999988765432 223334442221 1111 111 46777765431
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.+ .-...++.|+++..+|+++..
T Consensus 244 ~~----~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 244 PE----TCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred HH----HHHHHHHHhhcCCEEEEeCCc
Confidence 11 123467778888888887653
No 456
>PRK13529 malate dehydrogenase; Provisional
Probab=91.53 E-value=4.5 Score=45.39 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=134.0
Q ss_pred cCCCCcEEEEcCccccc-cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 89 KFKTLRIIVRIGSGVDN-IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 89 ~~p~LK~I~~~gaG~D~-ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
.+|+. +|+.-=-+..+ +.+..--+..|.+.|+. . .-+|--+++-+|+.+|-. |
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDD-i--QGTaaV~LAgll~A~r~~---------g------------- 290 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDD-I--QGTGAVTLAGLLAALKIT---------G------------- 290 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeeccc-c--chHHHHHHHHHHHHHHHh---------C-------------
Confidence 34665 66666555533 34433345578898873 2 346777888888887743 1
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHh----CCC-------EEEEECCCC----Cc-hh-------hhhc-Cc-----
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKA----FGF-------NVIFYDPYL----PD-GI-------EKSL-GL----- 218 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~a----fG~-------~Vi~~dr~~----~~-~~-------~~~~-gv----- 218 (501)
..|.+.+|.|+|.|..|-.+|+.+.. .|. +++.+|+.- .. +. ++.. ..
T Consensus 291 ---~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~ 367 (563)
T PRK13529 291 ---EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDT 367 (563)
T ss_pred ---CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccc
Confidence 24788999999999999999999976 587 788888652 10 11 1100 00
Q ss_pred -eecCCHHHHHhcC--CEEEEeccCchhhhhcccHHHHhcCCC---CcEEEEcCCCCccCHHHHHHHHH--cCC-ceEEE
Q psy7383 219 -TRVYTLQDLLFQS--DCVSLHCTLNEHNHHLINEFTIKQMRP---GAFLVNTARGGLVDDDSLAAALK--QGR-IRAAA 289 (501)
Q Consensus 219 -~~~~sLdelL~~s--DvVil~lPlt~~T~~lI~~~~l~~MK~---gAilINvaRG~vVde~aL~~aL~--~g~-I~GAa 289 (501)
....+|.|+++.. |++|=+- ..-++|+++.++.|.+ ..++.=.|+....-|-.-.++.+ +|+ |.+.+
T Consensus 368 ~~~~~~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtG 443 (563)
T PRK13529 368 EGDVISLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATG 443 (563)
T ss_pred ccCCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEEC
Confidence 0113789999988 9887542 2358999999999987 99999999876644433334443 454 43322
Q ss_pred EecCCCCCCCCCC--CCCCCCCCeEEecCCCCCc-----HHHHHHHHHHHHHHHHHHHh
Q psy7383 290 LDVHESEPYNVFQ--GNLKDAPNILCTPHAAFYS-----EASCTELREMAASEIRRAIV 341 (501)
Q Consensus 290 LDVfe~EPl~~~~--~pL~~~pNVilTPHiAg~T-----~ea~~~~~~~~~~ni~~~l~ 341 (501)
. ..+|..... ..--+.-|+++-|=++--. ..-.++|...+++.|.++..
T Consensus 444 s---pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 444 S---PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred C---CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 2 112211100 0112456899999876321 22235677777777766554
No 457
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.53 E-value=0.32 Score=51.13 Aligned_cols=65 Identities=22% Similarity=0.090 Sum_probs=43.7
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcCce-------ecCCHHHHHhcCCEEEEec
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLT-------RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~gv~-------~~~sLdelL~~sDvVil~l 238 (501)
.+|+|.|.|- |.||+.+++.|...|++|++.++........ ....+ ....+..++.++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5689999986 9999999999999999999999753211110 00111 1112344567889887654
No 458
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=91.52 E-value=1.2 Score=45.96 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCE-EEEECCCCCchhhhhcCceecCCHHHHHhc--CCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFN-VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~-Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~--sDvVil~lPlt~~T~~lI~~ 250 (501)
..+|.|.|. |.+|+.+.+.|..+|++ |...+|.. ....-.|+..+.+++|+-.. -|+.++++|.. .+...+ +
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~--~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~ 83 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGK--GGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-L 83 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCC--CCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-H
Confidence 457889998 88999999999999886 33456651 01223567767789998887 89999999943 333333 2
Q ss_pred HHHhcCC-CCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMR-PGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK-~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+..+ .. +.++++.-+- .+-+++.|.+..++..+.
T Consensus 84 e~~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 84 EAID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTR 118 (291)
T ss_pred HHHH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCE
Confidence 3333 33 3344444333 344455899999888766
No 459
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.50 E-value=0.84 Score=46.85 Aligned_cols=89 Identities=28% Similarity=0.313 Sum_probs=58.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CH----HHHHh--cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TL----QDLLF--QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sL----delL~--~sDvVil~lPl 240 (501)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.+++... ...+.+|+..+. ++ .++.. ..|+|+-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 57899999999999999999999999 78888765432 222334432211 12 12222 37888776542
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. . . -.+.++.|+++..+|.++.
T Consensus 252 ~-~---~-~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 Q-A---T-LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred H-H---H-HHHHHHhccCCCEEEEEcc
Confidence 1 1 1 1456677888888888764
No 460
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=91.38 E-value=0.38 Score=51.88 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=67.6
Q ss_pred EEeeccchHHHH-HHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEec--cC-chhhh-----
Q psy7383 178 LGIVGLGRIGSA-VALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHC--TL-NEHNH----- 245 (501)
Q Consensus 178 VGIVGlG~IG~~-iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~l--Pl-t~~T~----- 245 (501)
+-|||.|.+|.+ +|+.|+..|++|.++|...... ..++.|+.... .-.+.+.++|+|+..- |. .++.+
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 9999999999999999765321 12234554322 1234567899988752 21 22211
Q ss_pred --hcccH-HHH-hcCC-CCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 246 --HLINE-FTI-KQMR-PGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 246 --~lI~~-~~l-~~MK-~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.++.+ +++ +.++ ...+-|--+.|+--...-|...|+...
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 13332 233 3333 345666667898888887778887644
No 461
>PRK05442 malate dehydrogenase; Provisional
Probab=91.36 E-value=1.6 Score=45.64 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=59.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCc----hhh----hh-----cCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPD----GIE----KS-----LGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~----~~~----~~-----~gv~~~~sLdelL~~sDvV 234 (501)
++|+|||. |.+|..+|-.|...+. ++..+|..... +.. .. ..+.......+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998865443 78999974321 111 00 0112223455789999999
Q ss_pred EEeccCc--h-hhhhc-c--cH----H---HHhc-CCCCcEEEEcCCCCccCHHHHH
Q psy7383 235 SLHCTLN--E-HNHHL-I--NE----F---TIKQ-MRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 235 il~lPlt--~-~T~~l-I--~~----~---~l~~-MK~gAilINvaRG~vVde~aL~ 277 (501)
+++.-.. + +|+-- + |. + .+.. .++.+++|.++ ..+|.-..+
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 139 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI 139 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence 9976531 1 22221 1 11 1 2223 34689999998 446555433
No 462
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=91.32 E-value=0.74 Score=45.73 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=54.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceec-----CCHH----HHH--hcCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRV-----YTLQ----DLL--FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~-----~sLd----elL--~~sDvVil~lPl 240 (501)
.|.+|.|.|.|.+|+.+++.++..|++ |++.++.... ...+.+|+..+ .++. ++. ...|+++-+...
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 208 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 578899999999999999999999999 8887765322 22233343211 1121 122 235776655321
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. ......++.|+++..+++++.
T Consensus 209 ~-----~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 209 Q-----WPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred H-----HHHHHHHHHhccCCEEEEEcc
Confidence 1 122345667777777777764
No 463
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=91.30 E-value=0.63 Score=46.73 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.+|.|+|. |.+|+.+++.++..|++|++.++..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA 181 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence 3679999998 9999999999999999999887664
No 464
>KOG0022|consensus
Probab=91.24 E-value=0.27 Score=51.34 Aligned_cols=50 Identities=36% Similarity=0.454 Sum_probs=41.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVYT 223 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~s 223 (501)
.|.|++|.|+|.+|.++++-++++|+ ++++.|-+.++ +..+++|+..+-+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iN 243 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFIN 243 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecC
Confidence 58999999999999999999999997 79999988654 5666777764433
No 465
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.24 E-value=0.8 Score=46.63 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhh-cCceec-----CCHHHHH-----hcCCEEEEeccC
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKS-LGLTRV-----YTLQDLL-----FQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~-~gv~~~-----~sLdelL-----~~sDvVil~lPl 240 (501)
|.+|.|.|. |.+|+.+++.++.+|+ +|++.+++..+ +..+. +|+..+ .++.+.+ ...|+|+-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 89998765432 22222 454321 1222222 136777665541
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
.. + .+.++.++++..+|.++
T Consensus 235 ----~~-~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 ----EI-S-DTVISQMNENSHIILCG 254 (345)
T ss_pred ----HH-H-HHHHHHhccCCEEEEEe
Confidence 11 2 45677778888887765
No 466
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.20 E-value=1.3 Score=47.75 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=67.5
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------hhhcCceec--CCHH-----HHHhcCCEEEEeccCchh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------EKSLGLTRV--YTLQ-----DLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------~~~~gv~~~--~sLd-----elL~~sDvVil~lPlt~~ 243 (501)
+|.|||+|..|.++|+.|...|++|.++|....... ....|+... ...+ +.+.+.|+|+..-...++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 689999999999999999999999999997643211 223455432 1122 467889998874333222
Q ss_pred hh----------hcccHH-H-HhcCCC-CcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 244 NH----------HLINEF-T-IKQMRP-GAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 244 T~----------~lI~~~-~-l~~MK~-gAilINvaRG~vVde~aL~~aL~~g 283 (501)
.. .++.+- . ...+++ ..+-|--+.|+.-...-|...|+..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~ 134 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAA 134 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 11 123322 2 233433 3555666778877777777777653
No 467
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.17 E-value=0.72 Score=47.16 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=54.9
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhh-cCceec------CCHHHHH-----hcCCEEEEecc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKS-LGLTRV------YTLQDLL-----FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~-~gv~~~------~sLdelL-----~~sDvVil~lP 239 (501)
.|.+|.|.|. |.+|+.+++.++.+|++|++.+++... +..++ +|+..+ .++.+.+ ...|+|+-++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 5789999998 999999999999999999988765432 22223 444211 0222222 13566665443
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .. -.+.++.++++..+|.++.
T Consensus 231 ~----~~--~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 231 G----KM--LDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred H----HH--HHHHHHHhccCcEEEEecc
Confidence 1 11 1355667777777776653
No 468
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.16 E-value=0.65 Score=48.45 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.2
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|+||| .|-.|+++.++|...- +++.....+.... . .+.++++.++|+|++++|... ...+. .+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------~---~~~~~~~~~~DvvFlalp~~~-s~~~~-~~~- 70 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------A---AARRELLNAADVAILCLPDDA-AREAV-ALI- 70 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------c---cCchhhhcCCCEEEECCCHHH-HHHHH-HHH-
Confidence 4799999 8999999999998765 3554443221111 1 234566788999999998442 22221 111
Q ss_pred hcCCCCcEEEEcC
Q psy7383 254 KQMRPGAFLVNTA 266 (501)
Q Consensus 254 ~~MK~gAilINva 266 (501)
.+.|..+||.|
T Consensus 71 --~~~g~~VIDlS 81 (313)
T PRK11863 71 --DNPATRVIDAS 81 (313)
T ss_pred --HhCCCEEEECC
Confidence 25689999998
No 469
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.16 E-value=0.39 Score=50.38 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=49.5
Q ss_pred eEEeec-cchHHHHHHHHHHhCCCEE---EEECCCCCchhh-hhcCce-ecCCH-HHHHhcCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAFGFNV---IFYDPYLPDGIE-KSLGLT-RVYTL-QDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~afG~~V---i~~dr~~~~~~~-~~~gv~-~~~sL-delL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+|+||| .|.+|+.+++.|...++.+ .++.+....+.. ...+.. .+.++ .+.+.++|+|++++|.. .++.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 8999999999998866653 333333221111 111211 11122 23458999999999844 222221
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy7383 250 EFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 250 ~~~l~~MK~gAilINva 266 (501)
.++ ++.|+++|+.+
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 122 35688899887
No 470
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.13 E-value=0.46 Score=49.63 Aligned_cols=98 Identities=11% Similarity=0.177 Sum_probs=59.9
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCC----chhhhh----c-----CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLP----DGIEKS----L-----GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~----~~~~~~----~-----gv~~~~sLdelL~~sDvV 234 (501)
.+|+|||. |.+|+.+|-.|...+. ++..+|.... .+.... . +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999987664 8999998532 111110 0 111113456789999999
Q ss_pred EEeccCc--h-hhhhc-c--cH-------HHHhcCCC-CcEEEEcCCCCccCHHH
Q psy7383 235 SLHCTLN--E-HNHHL-I--NE-------FTIKQMRP-GAFLVNTARGGLVDDDS 275 (501)
Q Consensus 235 il~lPlt--~-~T~~l-I--~~-------~~l~~MK~-gAilINvaRG~vVde~a 275 (501)
+++.-.. + +|+.- + |. ..+....+ .+++|.++ ..+|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9986531 1 22221 1 11 12333344 88999987 4455443
No 471
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.12 E-value=0.76 Score=47.77 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=32.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
..|.+|.|+|.|.+|..+++.++.+|. +|++.++..
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 357899999999999999999999999 699888754
No 472
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.10 E-value=0.83 Score=43.77 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=29.9
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+++.|.| .|.||+.+|+.|...|++|++++++..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 4677777 899999999999999999999998754
No 473
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=90.97 E-value=0.88 Score=46.16 Aligned_cols=91 Identities=22% Similarity=0.273 Sum_probs=57.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc-hhhhhcCceecCC--------HHHHHh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD-GIEKSLGLTRVYT--------LQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~-~~~~~~gv~~~~s--------LdelL~--~sDvVil~lPlt 241 (501)
.|++|.|+|.|.+|+.+++.++..| .+|++.+++... ...+++|++.+.+ +.++.. ..|+|+-+....
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 4789999999999999999999999 899988765432 2223444322211 122232 367776654421
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
-...+.++.++++..+|.++...
T Consensus 247 -----~~~~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 247 -----ETLALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred -----HHHHHHHHHhhcCCEEEEEcCCC
Confidence 11245567777777777776543
No 474
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.96 E-value=0.58 Score=53.05 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|.|||-|..|...|..|+..|++|++|++..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 69999999999999999999999999999998654
No 475
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.95 E-value=0.5 Score=48.48 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=31.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~ 208 (501)
.|++|.|+|.|.+|..+++.++.+|.+ |++.+++.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 578999999999999999999999997 67787654
No 476
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.93 E-value=0.47 Score=48.96 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=32.6
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
++||+|.|.| .|-||+.+++.|...|++|+++++...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4678999998 599999999999999999999987653
No 477
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.83 E-value=1.1 Score=46.18 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=33.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
..|...+|.|+|+|.+|.++|+.|...|. +|..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 45899999999999999999999999998 488888653
No 478
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.79 E-value=1.5 Score=43.16 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=33.0
Q ss_pred cccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.|-+ .||+++|+.|...|++|++.+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999975 799999999999999999888763
No 479
>PRK14852 hypothetical protein; Provisional
Probab=90.78 E-value=1 Score=53.36 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=90.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC--chhh----------------------hhc----Cceec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP--DGIE----------------------KSL----GLTRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~--~~~~----------------------~~~----gv~~~ 221 (501)
..|+.++|+|||+|.+|..+|+.|...|. ++...|...- ..+. ++. .++..
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 46999999999999999999999999887 4666553210 0000 000 11111
Q ss_pred ------CCHHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 222 ------YTLQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 222 ------~sLdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
.+++++++++|+|+-++-. .-+++..++.... +.+.-+|..+-.+..-.- .-....+. ..-|+|.
T Consensus 408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v--~v~~p~~~---~~~~~f~ 479 (989)
T PRK14852 408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCAL--LVFMPGGM---NFDSYFG 479 (989)
T ss_pred ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeE--EEEcCCCC---CHHHhCC
Confidence 2467788999999987643 1234444443332 334455554431100000 00000000 0111222
Q ss_pred CCCCCCC----------------CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 295 SEPYNVF----------------QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 295 ~EPl~~~----------------~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
.||..+. --..++..+|=+.=+.+-.+.-+..-...+++..+++++-|+.
T Consensus 480 ~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~ 545 (989)
T PRK14852 480 IDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR 545 (989)
T ss_pred CCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence 2221110 1122345556555566777777888888899999999998873
No 480
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.74 E-value=0.73 Score=46.76 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=44.4
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc--hhh---hhc-----------CceecCCHHHHHhcCCEEEE
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD--GIE---KSL-----------GLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~---~~~-----------gv~~~~sLdelL~~sDvVil 236 (501)
.+|+|.|.| .|.||+.+++.|...|++|++.++.... ... ... .+....++++++++.|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 378999998 5999999999999999999887655421 110 000 11111235567788998877
Q ss_pred ecc
Q psy7383 237 HCT 239 (501)
Q Consensus 237 ~lP 239 (501)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
No 481
>PRK06398 aldose dehydrogenase; Validated
Probab=90.69 E-value=0.53 Score=46.33 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=33.5
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+++||++.|.| .|.||+.+|+.|...|++|++.+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 47899999998 569999999999999999999987643
No 482
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=90.68 E-value=0.61 Score=49.07 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=52.8
Q ss_pred cCCeEEeecc-chHHHHHHHHHHh--C-CCEEEEECCCCCchhhhhc---CceecCCHHHH-HhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKA--F-GFNVIFYDPYLPDGIEKSL---GLTRVYTLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~a--f-G~~Vi~~dr~~~~~~~~~~---gv~~~~sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
++.+|+|||. |.+|+.+.+.|.. + ..++..+......+..-.+ .+. +.+++++ +.++|++++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~-v~~~~~~~~~~~Dvvf~a~p~~---- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVT-VQDAAEFDWSQAQLAFFVAGRE---- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceE-EEeCchhhccCCCEEEECCCHH----
Confidence 4568999997 9999999999987 4 3455555332221111111 111 2245554 37899999999843
Q ss_pred hcccHHHHhcC-CCCcEEEEcC
Q psy7383 246 HLINEFTIKQM-RPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~M-K~gAilINva 266 (501)
+..+....+ +.|..+||.+
T Consensus 78 --~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 --ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHHCCCEEEECC
Confidence 222222322 5689999998
No 483
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.68 E-value=0.61 Score=48.05 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=54.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CH-------HHHH--hcCCEEEEe
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TL-------QDLL--FQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sL-------delL--~~sDvVil~ 237 (501)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.++.... ...+.+|+..+. +. .++. ...|+|+-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 57899999999999999999999999 89988765432 222334442211 11 1111 135666655
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+... .. ..+.++.|+++..+|.++.
T Consensus 257 ~g~~----~~-~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 257 SGHP----AA-VPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCCh----HH-HHHHHHHhccCCEEEEEcC
Confidence 4211 11 1345666777777776653
No 484
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.67 E-value=0.54 Score=45.83 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=33.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999985 9999999999999999999998764
No 485
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.62 E-value=0.44 Score=50.62 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=33.6
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
....+++|.|+|- |.||+.+++.|...|++|++++|..
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3467889999985 9999999999999999999998865
No 486
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.62 E-value=0.84 Score=50.84 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=32.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
-.|++|.|||.|.+|...|..|+.+|++|+++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999999954
No 487
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.60 E-value=0.4 Score=47.07 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=32.7
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
...+++|.|+| .|.||+.+++.|...|++|+++.|..
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 36789999999 59999999999999999999887764
No 488
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.58 E-value=0.45 Score=49.16 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=33.7
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++-.+++|.|.| .|-||+.+++.|...|++|++.++..
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467889999998 69999999999999999999987654
No 489
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=90.57 E-value=0.84 Score=45.98 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=56.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecC---C----HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVY---T----LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~---s----LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|.+|.|+|. |.+|+.+++.+++.|.+|++.++. +..+.+|+..+. + +.++....|+|+-+.- . .
T Consensus 162 ~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~---~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g---~-~ 234 (325)
T cd08264 162 PGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK---DWLKEFGADEVVDYDEVEEKVKEITKMADVVINSLG---S-S 234 (325)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH---HHHHHhCCCeeecchHHHHHHHHHhCCCCEEEECCC---H-H
Confidence 5789999998 999999999999999999988742 223344442211 1 1222244677765432 1 1
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.-.+.++.|+++..+|+++.
T Consensus 235 --~~~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 235 --FWDLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred --HHHHHHHhhccCCEEEEEec
Confidence 22466788888888887753
No 490
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.56 E-value=1.3 Score=51.71 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred CeEEeeccchHHHHH-HHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEeccCchhhh------
Q psy7383 176 DTLGIVGLGRIGSAV-ALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNH------ 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~i-A~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T~------ 245 (501)
++|.|||+|.+|.+. |+.|+..|++|.++|...... ..+..|+.... ...+.+.++|+|+..=--.+++.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 368999999999998 999999999999999764321 12334654321 23356778999887532222111
Q ss_pred ----hcccHH-HHhc-CCC-CcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 246 ----HLINEF-TIKQ-MRP-GAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 246 ----~lI~~~-~l~~-MK~-gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.++.+- ++.. ++. ..+-|--+.|+.-...-+...|++..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 223332 3223 342 35666667898888887788887643
No 491
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=90.55 E-value=0.48 Score=46.95 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=41.4
Q ss_pred eEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcC--CEEEEecc
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQS--DCVSLHCT 239 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~s--DvVil~lP 239 (501)
+|.|+| .|.||+.+++.|...|.+|++++|... .+....++++++..+ |+|+.+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~-------d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL-------DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc-------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 467888 599999999999999999999987521 112223466667765 99887664
No 492
>PLN02827 Alcohol dehydrogenase-like
Probab=90.53 E-value=0.98 Score=47.51 Aligned_cols=45 Identities=33% Similarity=0.450 Sum_probs=34.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||..+++.++.+|++ |++.++.... +..+++|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa 239 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV 239 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999984 8888765422 33344554
No 493
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.51 E-value=0.5 Score=38.45 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+|.|||-|.+|-.+|..|+.+|.+|.++++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999987643
No 494
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.41 E-value=0.77 Score=48.57 Aligned_cols=85 Identities=15% Similarity=0.290 Sum_probs=51.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHh-CCCE---EEEECCCCCchhhhhc-----CceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKA-FGFN---VIFYDPYLPDGIEKSL-----GLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~a-fG~~---Vi~~dr~~~~~~~~~~-----gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++.+|||||. |..|+.+.+.|.. -.++ +..+......+..-.+ -++.. +.++ +.++|++++++|.. .
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~~~~-~~~~Divf~a~~~~-~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA-KINS-FEGVDIAFFSAGGE-V 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC-CHHH-hcCCCEEEECCChH-H
Confidence 3468999997 9999999999984 5555 4434322211111111 11222 3334 48899999999843 2
Q ss_pred hhhcccHHHHhc-CCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQ-MRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~-MK~gAilINva 266 (501)
++.+ ... .+.|+.+||.+
T Consensus 81 s~~~-----~~~~~~~G~~VID~S 99 (347)
T PRK06728 81 SRQF-----VNQAVSSGAIVIDNT 99 (347)
T ss_pred HHHH-----HHHHHHCCCEEEECc
Confidence 2222 222 35689999988
No 495
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.31 E-value=1.1 Score=48.06 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=33.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.|+++.|.|. |.||+.+|+.|...|++|++.++..
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~ 244 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA 244 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999987 9999999999999999999998753
No 496
>PLN02427 UDP-apiose/xylose synthase
Probab=90.27 E-value=0.5 Score=49.55 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=32.7
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhC-CCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAF-GFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~af-G~~Vi~~dr~~ 208 (501)
..++.++|.|.| .|-||+.+++.|... |.+|+++|+..
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 357778999998 599999999999987 59999999754
No 497
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=90.26 E-value=0.75 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.064 Sum_probs=29.1
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+|.|.| .|-||+.+++.|...|++|+++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 5777887 59999999999999999999998764
No 498
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.21 E-value=0.78 Score=43.95 Aligned_cols=36 Identities=31% Similarity=0.110 Sum_probs=32.3
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.+|++-|.| .|.||+.+++.|...|++|++.++..
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~ 39 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQD 39 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 7789999997 58899999999999999999998764
No 499
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.19 E-value=0.47 Score=46.30 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=33.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+++||++.|.|. |.||+.+++.|...|++|++.+|...
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 588999999985 89999999999999999999988643
No 500
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.18 E-value=0.44 Score=51.36 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=33.4
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.++||++.|.|- |.||+++|+.|...|++|++.+++.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999986 8999999999999999999998764
Done!