RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7383
(501 letters)
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 150 bits (379), Expect = 1e-43
Identities = 144/193 (74%), Positives = 166/193 (86%)
Query: 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186
EE AD+TLC ILNLYRR WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+
Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60
Query: 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246
G AVALRAKAFGFNV+FYDPYL DG+E++LGL RV TLQDLLF SDCV+LHC LNEHNHH
Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120
Query: 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLK 306
LIN+FT+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LK
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180
Query: 307 DAPNILCTPHAAF 319
DAPN++CTPHAA+
Sbjct: 181 DAPNLICTPHAAW 193
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 134 bits (338), Expect = 3e-38
Identities = 84/115 (73%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 29 PLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLE 88
PLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGALM+HTI LT+EDLE
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 89 KFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143
KFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP ++ + R
Sbjct: 62 KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAAS-VYSEQASIEMREEAARE 115
Score = 42.2 bits (99), Expect = 2e-05
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 297 PYNVFQGNLKDAPNILCT--PHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353
N+ + D I P A+ YSE + E+RE AA EIRRAI GRIPD L+NCVN
Sbjct: 76 FDNIDIKSAGDL-GIAVCNVPAASVYSEQASIEMREEAAREIRRAITGRIPDSLKNCVN 133
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 113 bits (283), Expect = 6e-30
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 7/191 (3%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
A+ + L+L RR M+R ++ TLGI G G IG
Sbjct: 5 TAEIAMLLLLGSARRAGEGEKMIRTRSW----PGWEPLELVGEKLDNKTLGIYGFGSIGQ 60
Query: 189 AVALRAKAFGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247
A+A RA+ F ++ ++D + E S T +L LL S SL+ +
Sbjct: 61 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307
N+ TIK + GA +VNTARG LVD++ + AAL+ GR+ A DV EP D
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN--INEGYYD 178
Query: 308 APNILCTPHAA 318
PN PH
Sbjct: 179 LPNTFLFPHIG 189
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 108 bits (270), Expect = 4e-28
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 7/191 (3%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
VA+ + +IL+L R R+G + + S + +G V GRIG
Sbjct: 3 VAEHVVMMILSLVRNYLPSHEWARKGG-----WNIADCVSHAYDLEAMHVGTVAAGRIGL 57
Query: 189 AVALRAKAFGFNVIFY-DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247
AV R F ++ + LP+ +EK L LT T +D+ D V+L+C L+ H+
Sbjct: 58 AVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM 117
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307
IN+ T+K + GA++VNTARG L D D++A AL+ GR+ A DV +P +
Sbjct: 118 INDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKDHPWRT 176
Query: 308 APNILCTPHAA 318
P TPH +
Sbjct: 177 MPYNGMTPHIS 187
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 105 bits (261), Expect = 6e-27
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
VA+ + +L L R G + A+G RG LGI+G G IG+
Sbjct: 5 VAELVIGELLLLLRGVPEANAKAHRGVG-------NKLAAGSFEARGKKLGIIGYGHIGT 57
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
+ + A++ G V FYD + + T+V L DLL SD VSLH N +++
Sbjct: 58 QLGILAESLGMYVYFYDIENKLPLGNA---TQVQHLSDLLNMSDVVSLHVPENPSTKNMM 114
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGNL 305
I M+PG+ L+N +RG +VD +LA AL + AA+DV +EP + F L
Sbjct: 115 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 174
Query: 306 KDAPNILCTPHAA 318
+ N+L TPH
Sbjct: 175 AEFDNVLLTPHIG 187
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 103 bits (258), Expect = 2e-26
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 10/188 (5%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
A+ L L+L R+ +RE + ++ I G T+G+VGLGRIG
Sbjct: 5 AAEHALALLLAASRQIPAADASLREHT-------WKRSSFSGTEIFGKTVGVVGLGRIGQ 57
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
VA R AFG V+ YDPY+ LG+ + DLL ++D +S+H LI
Sbjct: 58 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLI 116
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA 308
++ + + +PG +VN ARGGLVD+ +LA A+ G +RAA LDV +EP L +
Sbjct: 117 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP--CTDSPLFEL 174
Query: 309 PNILCTPH 316
++ TPH
Sbjct: 175 AQVVVTPH 182
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 78.0 bits (190), Expect = 3e-17
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGK-----KFTGPEQLREAASGCARIRGDTLGIVGL 183
+A+ L L L R + ++ G F G E ++
Sbjct: 5 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH--------- 55
Query: 184 GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH 243
IG K FG VI YDPY G +L+DL QSD + LH E
Sbjct: 56 --IGQVAIKLFKGFGAKVIAYDPYPMKGDHPD---FDYVSLEDLFKQSDVIDLHVPGIEQ 110
Query: 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG 303
N H+INE M+PGA ++NTAR L+D ++ + LK G++ +D +E E ++
Sbjct: 111 NTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 170
Query: 304 N------------LKDAPNILCTPHAAFY 320
L PN++ +PH A+Y
Sbjct: 171 AKHGSFKDPLWDELLGMPNVVLSPHIAYY 199
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 75.0 bits (184), Expect = 4e-17
Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 35/123 (28%)
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
+T E+L K L+ I + +G+D++ ++ V G
Sbjct: 34 AALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQ 92
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
+++ R L G +A R
Sbjct: 93 MVMEAVR----------------------------------NLITYATGGRPRNIAKRED 118
Query: 196 AFG 198
G
Sbjct: 119 YIG 121
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 76.2 bits (187), Expect = 9e-17
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 52 VAFCDAQSTSEIHEKVLNEAVGALMW--HTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109
V D + E+ L +A + LT E + K K L++ + G G D++D++
Sbjct: 71 VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQ 130
Query: 110 AAGELGIAVCNVPGYGVEEVADTTLC--------LILNLYRRTYWLANMVREGK 155
+A + + V V + R +V+ G
Sbjct: 131 SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGA 184
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 74.8 bits (182), Expect = 4e-16
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 21/203 (10%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
+A+ + R+ + V P RE +R +G+VG G IG
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGRE-------VRDQVVGVVGTGHIGQ 56
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
+ FG VI YD + +EK V +L DL Q+D +SLH N H+I
Sbjct: 57 VFMQIMEGFGAKVITYDIFRNPELEKKG--YYVDSLDDLYKQADVISLHVPDVPANVHMI 114
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG----- 303
N+ +I +M+ +VN +RG LVD D++ L G+I A+DV+E E +
Sbjct: 115 NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKE 174
Query: 304 -------NLKDAPNILCTPHAAF 319
+L PN+L TP AF
Sbjct: 175 FPDARLADLIARPNVLVTPKTAF 197
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 67.6 bits (165), Expect = 3e-14
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 12/124 (9%)
Query: 40 SIEMPILKDVA------TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT- 92
E P LK+ V + D T E A G +++ + E L+
Sbjct: 10 EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADN 68
Query: 93 -LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
+ + GVDNID+ A ELG + NVP Y A + ++
Sbjct: 69 GITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSYTTHA---VRNMVVKAFDNNLELVEG 125
Query: 152 REGK 155
+E +
Sbjct: 126 KEAE 129
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 68.6 bits (166), Expect = 4e-14
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186
+ VA+ L L+L Y+R ++ G I+G+ + ++GLG I
Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGD--------YGRDVEIPLIQGEKVAVLGLGEI 53
Query: 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246
G+ V A G V + +G + +L++ L ++ LN+H
Sbjct: 54 GTRVGKILAALGAQVRGFSRTPKEGPWR-----FTNSLEEALREARAAVCALPLNKHTRG 108
Query: 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLK 306
L+ + M A VN R ++D D + LK+ A DV
Sbjct: 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 168
Query: 307 DAPNILCTPHAA 318
PN++ TP A
Sbjct: 169 SLPNVVATPWVA 180
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 65.9 bits (160), Expect = 9e-14
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 2/115 (1%)
Query: 45 ILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104
L D V + D ++ + EA L+ + E L L+I+ R G G+D
Sbjct: 18 ALGDQVEVRWVDGPDRDKLLAA-VPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD 76
Query: 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTG 159
N+DV AA G+ V N P A + R V + G
Sbjct: 77 NVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDA-VNVG 130
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 59.7 bits (144), Expect = 2e-11
Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 40 SIEMPILKDVA-----TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLR 94
E+ K A T+ + E G T EK
Sbjct: 10 VDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWA-KGFDGINSLQTTPYAAGVFEKMHAYG 68
Query: 95 IIV--RIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143
I G DNID+ A + GI + NVP Y V + + +L
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 59.2 bits (143), Expect = 4e-11
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSD 232
I G + G G +G A + FG VI + + ++ ++ V T+ + + +
Sbjct: 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81
Query: 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN-TARGGLVDDDSLAAALKQGRIRAAALD 291
+I +QM+ A + N +D L + +D
Sbjct: 82 ----IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 137
Query: 292 VHE 294
+
Sbjct: 138 RYR 140
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 56.9 bits (137), Expect = 1e-10
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 56 DAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKF-KTLRIIVRIGSGVDNIDVKAAGEL 114
D + T + + L+ KE +++ + ++ I G D+ID+ A
Sbjct: 30 DPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKAR 89
Query: 115 GIAVCNVPGYG---VEEVADTTLCLILNLYR 142
GI V N P E++A LI L+
Sbjct: 90 GIKVGNAPHGATQAREDMAHQANDLIDALFG 120
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 51.2 bits (122), Expect = 1e-08
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 56 DAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELG 115
A ++ E + +A + LT++ + + L I G + +D+ AA + G
Sbjct: 34 GALDDEQLKES-IRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRG 92
Query: 116 IAVCNVPGYGVEEVADTTLCLILNLYRR 143
I V N P +E + + +
Sbjct: 93 IPVFNAPFSSTQEAQENIGLEVAGKLIK 120
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 42.5 bits (98), Expect = 3e-05
Identities = 21/136 (15%), Positives = 38/136 (27%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237
+G+VGLG IG+++A + G +I + QDL +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
E I + P A + + A + +
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 298 YNVFQGNLKDAPNILC 313
+ +AP +L
Sbjct: 123 DGAEENLFVNAPYVLT 138
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 40.1 bits (93), Expect = 7e-05
Identities = 10/95 (10%), Positives = 23/95 (24%)
Query: 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQS 231
++R IVG G + A G + + ++ ++
Sbjct: 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET 68
Query: 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266
S + + +N+ N
Sbjct: 69 LLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 40.7 bits (94), Expect = 1e-04
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 5/142 (3%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFY----DPYLPDGIEKSLGLTRVYTLQDLLFQSD 232
+ IVG+G +G + A + GF Y +P + T +
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62
Query: 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292
+ + I + + A + + L L + + +
Sbjct: 63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAG 122
Query: 293 HE-SEPYNVFQGNLKDAPNILC 313
E S + IL
Sbjct: 123 TEKSGVEYSLDNLYEGKKVILT 144
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 202
Score = 35.4 bits (80), Expect = 0.007
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYD 205
+ I GLG +G+ A A G VI D
Sbjct: 3 ISIFGLGYVGAVCAGCLSARGHEVIGVD 30
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 33.4 bits (75), Expect = 0.019
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 180 IVGLGRIGSAVALRAKAFGFNVIFYDPY 207
++GLGR G ++ G V+ D
Sbjct: 5 VIGLGRFGGSIVKELHRMGHEVLAVDIN 32
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 33.8 bits (76), Expect = 0.024
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYD 205
+G+VGLG +G+ +AL GF V ++
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFN 31
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 33.4 bits (75), Expect = 0.029
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 179 GIVGLGRIGSAVALRAKAFGFNVIFYD 205
++GL +G + L GF V ++
Sbjct: 6 ALIGLAVMGQNLILNMNDHGFVVCAFN 32
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 33.3 bits (75), Expect = 0.031
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYD 205
T ++GLG G A A G +V+ +D
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWD 31
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 33.2 bits (75), Expect = 0.032
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
+G +GLG +G ++ G++++ D + G T + + Q D +
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 237 HCTLNEHNHHLI--NEFTIKQMRPGAFLVNTA 266
+ H + I+ +PG L++ +
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMS 94
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 31.3 bits (71), Expect = 0.038
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207
+ ++G G++G + + G V
Sbjct: 3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLD 33
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 32.2 bits (73), Expect = 0.041
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207
+ ++G G +G VA+ + G VI D Y
Sbjct: 13 RVMLLGSGELGKEVAIECQRLGVEVIAVDRY 43
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 196
Score = 33.0 bits (74), Expect = 0.050
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYD 205
+ + G G +G ++ + + V D
Sbjct: 3 IAVAGSGYVGLSLGVLL-SLQNEVTIVD 29
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 33.0 bits (74), Expect = 0.053
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
+ ++G G +G+ +A A A G V+ D
Sbjct: 6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQ 35
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 32.6 bits (73), Expect = 0.059
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
++G G +G +A ++ + G ++ D
Sbjct: 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDI 35
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 32.1 bits (72), Expect = 0.069
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
+G +G G + +A R ++ G V+
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLE 31
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 32.0 bits (71), Expect = 0.085
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207
+GI+G+G++ SA+ K +I
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSS 32
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 31.8 bits (71), Expect = 0.098
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYD 205
+ +GLG +G+ +A G+ + +D
Sbjct: 3 QIAFIGLGHMGAPMATNLLKAGYLLNVFD 31
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.0 bits (67), Expect = 0.14
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD 205
A +G + I+GLG G + A G D
Sbjct: 1 ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 30.7 bits (68), Expect = 0.17
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 180 IVGLGRIGSAVALRAKAFGFNVIFYDP 206
I G+GR+G +A G +++ D
Sbjct: 5 IAGIGRVGYTLAKSLSEKGHDIVLIDI 31
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 30.6 bits (69), Expect = 0.24
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIF--YDPYLPDGIEKSLGLTRVYTLQDLLFQ 230
I+G + I+G G G A A K G +V ++ GL ++ +
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAA 72
Query: 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV 263
+D V + T +E L E ++ GA L
Sbjct: 73 AD-VVMILTPDEFQGRLYKEEIEPNLKKGATLA 104
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 29.9 bits (66), Expect = 0.44
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 2/111 (1%)
Query: 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVS 235
+ + +GLG +G +A +++ + + + V
Sbjct: 1 EKVAFIGLGAMGYPMAGHLARRFPTLVWNR--TFEKALRHQEEFGSEAVPLERVAEARVI 58
Query: 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286
C + + E +R G + V+ G LA L++ +
Sbjct: 59 FTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 30.3 bits (66), Expect = 0.50
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 182 GLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDL 227
G G G A AL + V D + + LGL + + +
Sbjct: 9 GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASI 54
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 29.1 bits (64), Expect = 0.74
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 180 IVGLGRIGSAVALRAKAFGFNVIFYDPY 207
+ G + L+ G NV
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTVISNL 35
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 28.7 bits (63), Expect = 0.75
Identities = 11/108 (10%), Positives = 25/108 (23%), Gaps = 10/108 (9%)
Query: 180 IVGLGRIGSAVALRAKAFGFNVIFYDP-----YLPDGIEKSLGLTRVYTLQDLLFQSDCV 234
I G + V+ D L G G + +
Sbjct: 5 ICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGAR 64
Query: 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282
++ L + + I+++ ++ A L+
Sbjct: 65 AVIVNLESDSETIHCILGIRKIDESVRIIAEAE-----RYENIEQLRM 107
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 28.8 bits (63), Expect = 0.84
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYD 205
L VG G + K
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILS 29
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol
dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 28.7 bits (63), Expect = 1.00
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE--KSLGLTRVYTLQDLLFQSD 232
G + + G G IG L AKA G + + K +G V + Q
Sbjct: 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEI 86
Query: 233 CVSLHCTLNEHNHHLIN--------EFTIKQMRPGAFLVN-TARGGLVDDDSLAAALKQG 283
+ L I + I R G LV + L AA+++
Sbjct: 87 ARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREV 146
Query: 284 RIR 286
I+
Sbjct: 147 DIK 149
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 28.7 bits (63), Expect = 1.0
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLTRVYTLQDLLFQSDCVSL 236
+ +VG+GR GS K E SL R +L+D L +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVA 69
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285
+ +H ++ + + A ++GR+
Sbjct: 70 YICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV 118
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 28.6 bits (63), Expect = 1.2
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 178 LGIVGLGRIGSAVALRA--KAFGFNVIFYDP 206
+ ++GLG I L + ++
Sbjct: 4 IAMIGLGDIAQKAYLPVLAQWPDIELVLCTR 34
>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 93
Score = 27.4 bits (61), Expect = 1.2
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 69 NEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI---DVKAAGELGIAVCNVPGYG 125
A G L + L KE+L++F+ L + + +A V YG
Sbjct: 3 GGAWGRLACYLEFLKKEELKEFQLLLANKAHSRSSSGETPAQPEKTSGMEVASYLVAQYG 62
Query: 126 VEEVADTTLCLILNLYRRTYWLANMVRE 153
+ D L + R+ L +E
Sbjct: 63 EQRAWDLALHTWEQMGLRS--LCAQAQE 88
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 28.4 bits (62), Expect = 1.7
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 169 GCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL 228
G ++ + IVGLG +G A + + G + + + +L +++ +
Sbjct: 24 GQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLS-NLQRQTLHSDATVG 82
Query: 229 FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD 274
+ + H I + ++D
Sbjct: 83 QPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCT 128
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 27.7 bits (61), Expect = 2.0
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 167 ASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198
A A + + + +VG+G++G A A+
Sbjct: 12 AEEEATVPNNKITVVGVGQVGMACAISILGKS 43
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 27.6 bits (60), Expect = 2.2
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 172 RIRGDTLGIVGLGRIGSAVALRA 194
++R +G+VGLG I L
Sbjct: 1 KLR---IGVVGLGGIAQKAWLPV 20
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 28.3 bits (61), Expect = 2.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 182 GLGRIGSAVALRAKAFGFNVIFYD 205
G++G + + K VI D
Sbjct: 9 ANGQLGREIQKQLKGKNVEVIPTD 32
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 28.0 bits (61), Expect = 2.5
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 182 GLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241
G I S +A R K G VI D + + + + + L DL +C+ + ++
Sbjct: 23 AGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFH-LVDLRVMENCLKVTEGVD 81
Query: 242 EHNHH 246
+
Sbjct: 82 HVFNL 86
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 27.3 bits (60), Expect = 2.5
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237
+ I+G+G IG + + F I+ + I V L + SD ++
Sbjct: 5 VLIIGMGNIGKKL---VELGNFEKIYAYDRISKDIPG------VVRLDEFQVPSDVSTVV 55
Query: 238 CTLNEHNHHLINEFTIKQMRP 258
+ + +K
Sbjct: 56 ECASPEAVKEYSLQILKNPVN 76
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 28.2 bits (61), Expect = 2.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 182 GLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSL 216
G G +GS +A A + G ++I +D G +L
Sbjct: 8 GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNL 42
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 27.2 bits (60), Expect = 3.2
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 9/108 (8%)
Query: 177 TLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVS 235
+ I G G +G VA VI G+ K+ +
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDDMKVI--------GVSKTRPDFEARMALKKGYDLYVAI 54
Query: 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283
+ T+ M A +V + +L ++G
Sbjct: 55 PERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKG 102
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 27.2 bits (59), Expect = 3.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 179 GIVGLGRIGSAVALRAKAFGFNVIFYD 205
++G G +G G V +
Sbjct: 4 TVLGCGALGQLWLTALCKQGHEVQGWL 30
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 26.8 bits (58), Expect = 3.7
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCV 234
+ IVG G++G A +A G+ + D E L V + + +
Sbjct: 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLET 69
Query: 235 SL-HCTLNEHNHHLINEFTIK 254
N L + ++K
Sbjct: 70 IERLKPYLTENMLLADLTSVK 90
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
(SLT70), superhelical domain {Escherichia coli [TaxId:
562]}
Length = 450
Score = 27.5 bits (60), Expect = 3.9
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 409 YYAAAAAAAIGTLPPVQQAHSTTPHDSAIAPAPGSER 445
+Y AA IG ++ + DSA+ P R
Sbjct: 351 FYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMAR 387
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 26.5 bits (58), Expect = 4.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 179 GIVGLGRIGSAVALRAKAFGFN--VIFYD 205
+VG+G +G A A+ G + D
Sbjct: 23 TVVGVGDVGMACAISILLKGLADELALVD 51
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 26.9 bits (58), Expect = 5.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 180 IVGLGRIGSAVALRAKAFGFNVIFYD 205
+ G G +G +ALR G ++
Sbjct: 6 LGGTGNLGKGLALRLATLGHEIVVGS 31
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 27.3 bits (60), Expect = 5.0
Identities = 16/141 (11%), Positives = 35/141 (24%), Gaps = 27/141 (19%)
Query: 161 EQLREAASGCARIRGDTLGIVG-------------------LGRIGSAVALRAKAFGFNV 201
++ A + +T + G + A K G+N+
Sbjct: 115 AKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNL 174
Query: 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL--------HCTLNEHNHHLINEFTI 253
P+ + L V + Q + + H + N +
Sbjct: 175 RIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQAL 234
Query: 254 KQMRPGAFLVNTARGGLVDDD 274
+ +N RG + +
Sbjct: 235 WAEKLFHIDLNGQRGIKYEQE 255
>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
protein TM1585) {Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 26.9 bits (59), Expect = 6.3
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQ 302
A GG+VD + G L ++S YN +
Sbjct: 356 AAGGIVDGSTAKTLKAMGEDPYQYLKNNDS--YNALK 390
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 26.5 bits (58), Expect = 6.6
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 9/107 (8%)
Query: 178 LGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
+G+ G G IG VA +I GI K+ Y ++L S
Sbjct: 5 VGVNGYGTIGKRVAYAVTKQDDMELI--------GITKTKPDFEAYRAKELGIPVYAASE 56
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283
T+ + ++ A G + + K G
Sbjct: 57 EFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAG 103
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 26.1 bits (57), Expect = 6.7
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 179 GIVGLGRIGSAVALRAKAFGF--NVIFYD 205
I+G G +G++ A ++ D
Sbjct: 5 AIIGAGFVGASAAFTMALRQTANELVLID 33
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 26.0 bits (56), Expect = 8.3
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 178 LGIVGLGRIGSAVALR-AKAFGFNVIFYDP 206
+ +G G + +AVA K G+ + +
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQGGYRIYIANR 32
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 26.0 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 172 RIRGDTLGIVGLGRIGSAVALRA 194
+IR LGIVG G + L A
Sbjct: 3 KIR---LGIVGCGIAARELHLPA 22
>d1du5a_ b.25.1.1 (A:) Zeamatin {Maize (Zea mays) [TaxId: 4577]}
Length = 206
Score = 25.7 bits (56), Expect = 9.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 446 GGGAPPSGSGGGGAPPSGGGPPPNTPA 472
G G+ +G GG +G G PNT A
Sbjct: 57 GRGSCRTGDCGGVLQCTGYGRAPNTLA 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.417
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,963,835
Number of extensions: 96835
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 84
Length of query: 501
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,185,626
Effective search space: 488477912
Effective search space used: 488477912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)