BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7385
         (208 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A0M|A Chain A, Arginase Superfamily Protein From Trypanosoma Cruzi
          Length = 316

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 19  SLKSCGKEGTLMWCPSQCGISGNEAVDM---AAKNPTTPIQPLKLCSASDFKPIV 70
           SLKS    G  + CP+  G+S  EA DM   A K PT     + +   S+  P+V
Sbjct: 239 SLKSSDMPG--VSCPAAVGLSAQEAFDMCFLAGKTPT-----VMMMDMSELNPLV 286


>pdb|4B56|A Chain A, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
 pdb|4B56|B Chain B, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
          Length = 820

 Score = 27.7 bits (60), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 160 NTSVKAPNRKKEQHCKPHVEKRTHMRKSENIK 191
           N S + PN+    + KP + KR H  KS+ I+
Sbjct: 373 NLSCREPNQHFRPYLKPFLPKRLHFAKSDRIE 404


>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
 pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
          Length = 823

 Score = 27.7 bits (60), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 160 NTSVKAPNRKKEQHCKPHVEKRTHMRKSENIK 191
           N S + PN+    + KP + KR H  KS+ I+
Sbjct: 377 NLSCREPNQHFRPYLKPFLPKRLHFAKSDRIE 408


>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
 pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
          Length = 823

 Score = 27.7 bits (60), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 160 NTSVKAPNRKKEQHCKPHVEKRTHMRKSENIK 191
           N S + PN+    + KP + KR H  KS+ I+
Sbjct: 377 NLSCREPNQHFRPYLKPFLPKRLHFAKSDRIE 408


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,723,703
Number of Sequences: 62578
Number of extensions: 209140
Number of successful extensions: 407
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)