Query psy7385
Match_columns 208
No_of_seqs 170 out of 757
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 16:52:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 98.9 4.4E-10 1.5E-14 88.8 4.0 42 13-54 106-147 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 98.8 1.6E-09 5.5E-14 85.3 1.8 42 12-54 110-151 (154)
3 3h08_A RNH (ribonuclease H); R 98.7 1.5E-09 5E-14 84.6 1.0 40 13-53 104-143 (146)
4 2e4l_A Ribonuclease HI, RNAse 98.7 3.4E-09 1.2E-13 84.0 1.6 41 13-54 105-145 (158)
5 1jl1_A Ribonuclease HI; RNAse 98.7 3.3E-09 1.1E-13 83.8 1.3 41 13-54 103-143 (155)
6 2kq2_A Ribonuclease H-related 98.7 6.9E-10 2.4E-14 87.1 -2.8 39 13-54 99-137 (147)
7 3p1g_A Xenotropic murine leuke 98.6 4.6E-09 1.6E-13 84.3 0.5 32 23-54 120-156 (165)
8 1ril_A Ribonuclease H; hydrola 98.6 5.2E-09 1.8E-13 83.7 0.2 41 13-54 108-148 (166)
9 2lsn_A Reverse transcriptase; 98.4 3E-08 1E-12 79.6 0.5 40 13-52 116-161 (165)
10 3hst_B Protein RV2228C/MT2287; 97.7 1.6E-05 5.3E-10 60.4 3.2 42 9-54 92-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 97.5 2.8E-05 9.5E-10 58.6 2.0 39 10-52 96-135 (140)
12 2ehg_A Ribonuclease HI; RNAse 97.2 8.4E-05 2.9E-09 57.3 1.6 36 14-54 99-134 (149)
13 2i0f_A 6,7-dimethyl-8-ribityll 51.8 9.7 0.00033 29.7 2.9 33 16-50 34-66 (157)
14 2c92_A 6,7-dimethyl-8-ribityll 41.2 17 0.00058 28.4 2.8 32 16-49 39-71 (160)
15 1c2y_A Protein (lumazine synth 34.9 24 0.00083 27.4 2.7 33 16-50 35-69 (156)
16 3nq4_A 6,7-dimethyl-8-ribityll 34.3 27 0.00091 27.2 2.9 33 16-50 34-70 (156)
17 2bhu_A Maltooligosyltrehalose 33.2 43 0.0015 31.0 4.7 36 10-45 192-227 (602)
18 1rvv_A Riboflavin synthase; tr 32.9 26 0.0009 27.1 2.7 33 16-50 34-69 (154)
19 1hqk_A 6,7-dimethyl-8-ribityll 32.8 26 0.0009 27.1 2.7 33 16-50 34-69 (154)
20 1ejb_A Lumazine synthase; anal 29.1 31 0.0011 27.1 2.5 32 16-49 38-72 (168)
21 1wzl_A Alpha-amylase II; pullu 27.8 56 0.0019 29.9 4.4 31 11-41 220-250 (585)
22 1j0h_A Neopullulanase; beta-al 27.0 54 0.0018 30.1 4.1 31 11-41 223-253 (588)
23 4aio_A Limit dextrinase; hydro 26.6 61 0.0021 30.7 4.6 33 9-41 377-409 (884)
24 1ua7_A Alpha-amylase; beta-alp 26.0 59 0.002 28.3 4.1 31 11-41 75-105 (422)
25 1ea9_C Cyclomaltodextrinase; h 25.4 52 0.0018 30.2 3.7 31 11-41 219-249 (583)
26 3m07_A Putative alpha amylase; 25.2 71 0.0024 29.7 4.7 34 11-44 203-236 (618)
27 4aef_A Neopullulanase (alpha-a 23.9 71 0.0024 29.6 4.4 31 11-41 286-316 (645)
28 3vgf_A Malto-oligosyltrehalose 23.8 80 0.0027 28.8 4.7 35 10-44 167-201 (558)
29 3cbw_A YDHT protein; structura 23.3 78 0.0027 27.6 4.2 31 5-37 147-177 (353)
30 4aie_A Glucan 1,6-alpha-glucos 23.2 81 0.0028 27.9 4.5 31 11-41 80-110 (549)
31 2guy_A Alpha-amylase A; (beta- 23.2 72 0.0025 28.1 4.1 31 11-41 98-128 (478)
32 1di0_A Lumazine synthase; tran 23.0 35 0.0012 26.5 1.7 33 16-50 32-67 (158)
33 1kz1_A 6,7-dimethyl-8-ribityll 22.1 43 0.0015 26.1 2.1 33 16-50 39-75 (159)
34 1ht6_A AMY1, alpha-amylase iso 22.0 85 0.0029 27.1 4.3 31 10-40 68-98 (405)
35 1mxg_A Alpha amylase; hyperthe 20.6 89 0.003 27.4 4.1 31 10-40 86-116 (435)
36 3k1d_A 1,4-alpha-glucan-branch 20.4 98 0.0034 29.6 4.6 32 10-41 312-343 (722)
37 1lwj_A 4-alpha-glucanotransfer 20.0 1E+02 0.0036 26.8 4.4 31 11-41 70-100 (441)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.94 E-value=4.4e-10 Score=88.81 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
+++.+.++...+..|.|.|||||+|++|||.||++|++|+..
T Consensus 106 l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 106 LVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 344443334467889999999999999999999999999864
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.77 E-value=1.6e-09 Score=85.26 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 12 NLFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 12 ~I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
.+++.+..|.+ +..|.|.|||||+|++|||.||++||+|+..
T Consensus 110 ~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 110 EDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 34555555544 5679999999999999999999999988754
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.75 E-value=1.5e-09 Score=84.58 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTT 53 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~ 53 (208)
+++.+..+.+. ..|.|.|||||+|++|||.||++||+|+.
T Consensus 104 l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 104 LWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 33444444433 46999999999999999999999998864
No 4
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.69 E-value=3.4e-09 Score=83.99 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
+++.+..|.+ +..|.|.|||||+|++|||.||++||+|+..
T Consensus 105 l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 105 LWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 3344444544 3589999999999999999999999998854
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.69 E-value=3.3e-09 Score=83.77 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
+++.+..+.+ +..|.|.|||||+|++|||.||++||+|+..
T Consensus 103 l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 143 (155)
T 1jl1_A 103 LWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMN 143 (155)
T ss_dssp HHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 3444445544 3689999999999999999999999999865
No 6
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.68 E-value=6.9e-10 Score=87.14 Aligned_cols=39 Identities=21% Similarity=0.092 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
..+.+++|.. .|.|.|||||+|++|||.||++||+|+..
T Consensus 99 ~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 137 (147)
T 2kq2_A 99 YAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGI 137 (147)
T ss_dssp HHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhc
Confidence 3444445544 79999999999999999999999999876
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.62 E-value=4.6e-09 Score=84.33 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.6
Q ss_pred CCCceEEEEeccCCC-----CCcchHHhHhhCCCCCC
Q psy7385 23 CGKEGTLMWCPSQCG-----ISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 23 ~g~~I~l~WVPgH~g-----i~GNE~AD~~Ak~A~~~ 54 (208)
.+..|.|.|||||+| ++|||+||++||+|+..
T Consensus 120 ~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 120 LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhc
Confidence 578899999999999 99999999999998865
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.60 E-value=5.2e-09 Score=83.70 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
+++.+..|.+. ..|.|.|||||+|++|||.||++||+|+..
T Consensus 108 l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 148 (166)
T 1ril_A 108 LWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQAQS 148 (166)
T ss_dssp HHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHHHHH
Confidence 44445555443 589999999999999999999999999876
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.43 E-value=3e-08 Score=79.60 Aligned_cols=40 Identities=15% Similarity=-0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCceEEEEeccCCCC------CcchHHhHhhCCCC
Q psy7385 13 LFCLERSLKSCGKEGTLMWCPSQCGI------SGNEAVDMAAKNPT 52 (208)
Q Consensus 13 I~~~~~~L~~~g~~I~l~WVPgH~gi------~GNE~AD~~Ak~A~ 52 (208)
+++.+.++.+....|.|.|||||+|+ +|||+||++|++++
T Consensus 116 L~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 116 KWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp HHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 34444444455567999999999996 58999999999875
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=97.73 E-value=1.6e-05 Score=60.44 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 9 DLKNLFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 9 ~i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
.+..+++.+..|.++...|.|.|||+ +|||.||++||+|...
T Consensus 92 ~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 92 DLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 45677778888888888999999995 9999999999987643
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=97.53 E-value=2.8e-05 Score=58.65 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH-HhCCCceEEEEeccCCCCCcchHHhHhhCCCC
Q psy7385 10 LKNLFCLERSL-KSCGKEGTLMWCPSQCGISGNEAVDMAAKNPT 52 (208)
Q Consensus 10 i~~I~~~~~~L-~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~ 52 (208)
+..+++.+..+ .+....|+|.|||+ +|||.||++||+|+
T Consensus 96 l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~ 135 (140)
T 3u3g_D 96 LKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAI 135 (140)
T ss_dssp GHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHH
Confidence 34455666666 55556899999994 99999999999875
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.24 E-value=8.4e-05 Score=57.33 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCCCCCC
Q psy7385 14 FCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTP 54 (208)
Q Consensus 14 ~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~A~~~ 54 (208)
++.+..+.+.- .|.|.|||+ ++||.||++|++|+..
T Consensus 99 ~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 99 YEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 33333333332 499999999 6999999999988754
No 13
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=51.76 E-value=9.7 Score=29.72 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHHhCCCceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+.|.+|.+.||||=-.||. .|+++|+.
T Consensus 34 A~~~l~~~G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 34 AKAALDEAGATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHHHTTCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHcCCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 4578888998999999999887775 56666653
No 14
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=41.22 E-value=17 Score=28.42 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHhCCC-ceEEEEeccCCCCCcchHHhHhhC
Q psy7385 16 LERSLKSCGK-EGTLMWCPSQCGISGNEAVDMAAK 49 (208)
Q Consensus 16 ~~~~L~~~g~-~I~l~WVPgH~gi~GNE~AD~~Ak 49 (208)
+.+.|.+.|. .|.+.||||=-.||. .|+++|+
T Consensus 39 A~~~l~~~G~~~i~v~~VPGafEiP~--aak~la~ 71 (160)
T 2c92_A 39 ARKVAAGCGLDDPTVVRVLGAIEIPV--VAQELAR 71 (160)
T ss_dssp HHHHHHHTTCSCCEEEEESSGGGHHH--HHHHHHT
T ss_pred HHHHHHHcCCCceEEEECCcHHHHHH--HHHHHHh
Confidence 4477888887 899999999988886 6788886
No 15
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=34.85 E-value=24 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=25.3
Q ss_pred HHHHHHhCC--CceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKSCG--KEGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~~g--~~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+.| ..|.+.||||=-.||. .|+++|+.
T Consensus 35 a~~~l~~~Gv~~~i~v~~VPGafEiP~--aa~~la~~ 69 (156)
T 1c2y_A 35 ALDTFKKYSVNEDIDVVWVPGAYELGV--TAQALGKS 69 (156)
T ss_dssp HHHHHHHTTCCSCCEEEEESSHHHHHH--HHHHHHHT
T ss_pred HHHHHHHcCCCCceEEEECCcHHHHHH--HHHHHHhc
Confidence 447788888 4799999999877774 56777764
No 16
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=34.31 E-value=27 Score=27.19 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.6
Q ss_pred HHHHHHhCC----CceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKSCG----KEGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~~g----~~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+.| ..|.+.||||=-.|| =.|+++|+.
T Consensus 34 A~~~l~~~G~v~~~~i~v~~VPGafEiP--~aa~~la~~ 70 (156)
T 3nq4_A 34 AVDALTRIGQVKDDNITVVWVPGAYELP--LATEALAKS 70 (156)
T ss_dssp HHHHHHHTTCCCTTSEEEEEESSTTTHH--HHHHHHHHH
T ss_pred HHHHHHHcCCCcccceEEEEcCcHHHHH--HHHHHHHhc
Confidence 556778888 379999999998888 467777754
No 17
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=33.24 E-value=43 Score=31.04 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccCCCCCcchHHh
Q psy7385 10 LKNLFCLERSLKSCGKEGTLMWCPSQCGISGNEAVD 45 (208)
Q Consensus 10 i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~AD 45 (208)
+.++-+.++++.+.|..|-+-+|+.|++..+|....
T Consensus 192 ~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~ 227 (602)
T 2bhu_A 192 PEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSS 227 (602)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccccCCccccc
Confidence 345667778999999999999999999988875543
No 18
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=32.90 E-value=26 Score=27.13 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.3
Q ss_pred HHHHHHhCCC---ceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKSCGK---EGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~~g~---~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+.|. +|.+.||||=-.||. .|+++|+.
T Consensus 34 a~~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1rvv_A 34 AEDALLRHGVDTNDIDVAWVPGAFEIPF--AAKKMAET 69 (154)
T ss_dssp HHHHHHHTTCCGGGEEEEEESSGGGHHH--HHHHHHHT
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 4477888884 589999999888874 56777764
No 19
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=32.83 E-value=26 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHHhCCC---ceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKSCGK---EGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~~g~---~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+.|. +|.+.||||=-.||. .|+++|+.
T Consensus 34 a~~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1hqk_A 34 AIDCIVRHGGREEDITLVRVPGSWEIPV--AAGELARK 69 (154)
T ss_dssp HHHHHHHTTCCGGGEEEEEESSGGGHHH--HHHHHHTC
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 4477888884 689999999888884 56777764
No 20
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=29.14 E-value=31 Score=27.14 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=24.5
Q ss_pred HHHHHHhCCC---ceEEEEeccCCCCCcchHHhHhhC
Q psy7385 16 LERSLKSCGK---EGTLMWCPSQCGISGNEAVDMAAK 49 (208)
Q Consensus 16 ~~~~L~~~g~---~I~l~WVPgH~gi~GNE~AD~~Ak 49 (208)
+++.|.+.|. .|.+.||||=-.||. .|.++|+
T Consensus 38 A~~~L~~~Gv~~~~i~v~~VPGafEiP~--aak~la~ 72 (168)
T 1ejb_A 38 AIERMASLGVEENNIIIETVPGSYELPW--GTKRFVD 72 (168)
T ss_dssp HHHHHHHTTCCGGGEEEEECSSGGGHHH--HHHHHHH
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHh
Confidence 4577888884 689999999888875 5666665
No 21
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=27.80 E-value=56 Score=29.91 Aligned_cols=31 Identities=13% Similarity=-0.137 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-+.++++.++|..|-+-|||.|++...-
T Consensus 220 ~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~ 250 (585)
T 1wzl_A 220 PTFRRLVDEAHRRGIKIILDAVFNHAGDQFF 250 (585)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCSBCCTTSH
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCCcCCCccH
Confidence 4566778899999999999999999997543
No 22
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=27.01 E-value=54 Score=30.07 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-+.++++.++|..|-+-|||.|++....
T Consensus 223 ~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~ 253 (588)
T 1j0h_A 223 ETLKTLIDRCHEKGIRVMLDAVFNHCGYEFA 253 (588)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCTTCH
T ss_pred HHHHHHHHHHHHCCCEEEEEECcCcCcccch
Confidence 4566778899999999999999999987654
No 23
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=26.59 E-value=61 Score=30.74 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 9 DLKNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 9 ~i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
-|.+.-+.++++.++|..|-+-+||.|++-.+.
T Consensus 377 ~~~efk~LV~~aH~~GIkVIlDvV~NHts~~h~ 409 (884)
T 4aio_A 377 RIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGP 409 (884)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCSBCSCCSS
T ss_pred hHHHHHHHHHHHHhcCCceeeeeccccccCCCc
Confidence 366788889999999999999999999987653
No 24
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=26.04 E-value=59 Score=28.29 Aligned_cols=31 Identities=3% Similarity=-0.103 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-+.++++.++|..|-+-|||.|++-...
T Consensus 75 ~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~ 105 (422)
T 1ua7_A 75 QEFKEMCAAAEEYGIKVIVDAVINHTTFDYA 105 (422)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCSBCCSCTT
T ss_pred HHHHHHHHHHHHCCCEEEEEeccCcccCCcc
Confidence 4566778899999999999999999976543
No 25
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=25.44 E-value=52 Score=30.16 Aligned_cols=31 Identities=16% Similarity=-0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-+.++++.++|..|-+-|||.|++....
T Consensus 219 ~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~ 249 (583)
T 1ea9_C 219 DTLKKLVDLCHERGIRVLLDAVFNHSGRTFP 249 (583)
T ss_dssp HHHHHHHHHHTTTTCEEEEECCCSBCCTTTH
T ss_pred HHHHHHHHHHHHCCCEEEEEEccccCCCccH
Confidence 4566778899999999999999999996543
No 26
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=25.24 E-value=71 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcchHH
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGNEAV 44 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~A 44 (208)
.++-+.++++.+.|..|-+-+|+.|+|-.++-..
T Consensus 203 ~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~ 236 (618)
T 3m07_A 203 DDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLP 236 (618)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHH
T ss_pred HHHHHHHHHHHHCCCEEEEeecCccCCCCccccc
Confidence 4566778899999999999999999998887654
No 27
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=23.92 E-value=71 Score=29.57 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-++++++.++|..|-+-||+.|+|....
T Consensus 286 ~df~~LV~~aH~~GI~VIlD~V~NHts~~h~ 316 (645)
T 4aef_A 286 RAFVDLLSELKRFDIKVILDGVFHHTSFFHP 316 (645)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCTTSH
T ss_pred HHHHHHHHHhhhcCCEEEEEecccccccCCc
Confidence 4556677899999999999999999987543
No 28
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=23.81 E-value=80 Score=28.77 Aligned_cols=35 Identities=20% Similarity=0.058 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccCCCCCcchHH
Q psy7385 10 LKNLFCLERSLKSCGKEGTLMWCPSQCGISGNEAV 44 (208)
Q Consensus 10 i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GNE~A 44 (208)
..++-+.++++.+.|..|-+-||+.|++-.++-..
T Consensus 167 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~~ 201 (558)
T 3vgf_A 167 PEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMV 201 (558)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCGG
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccCCCCccc
Confidence 45666778899999999999999999998776543
No 29
>3cbw_A YDHT protein; structural genomics, unknown function, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: CIT; 1.27A {Bacillus subtilis} PDB: 2whk_A 2qha_A
Probab=23.30 E-value=78 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEeccCCC
Q psy7385 5 QKLSDLKNLFCLERSLKSCGKEGTLMWCPSQCG 37 (208)
Q Consensus 5 ~~~~~i~~I~~~~~~L~~~g~~I~l~WVPgH~g 37 (208)
.+..+|++|-+.+++|+..| |-+.|-|+|.-
T Consensus 147 ~~~~~ld~iA~~l~~l~~~g--vPV~~Rp~HE~ 177 (353)
T 3cbw_A 147 RLNAMLSKIADGLQELENQG--VPVLFRPLHEM 177 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--CCEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHhccCC--CcEEEEeCccc
Confidence 46788999999999999988 55688889974
No 30
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=23.21 E-value=81 Score=27.89 Aligned_cols=31 Identities=6% Similarity=-0.131 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-++++++.++|..|-+-+|+.|+|....
T Consensus 80 ~dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~ 110 (549)
T 4aie_A 80 ADMDELISKAKEHHIKIVMDLVVNHTSDQHK 110 (549)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCTTSH
T ss_pred HHHHHHHHHHHHCCCEEEEEECccCCcCCcc
Confidence 4556677899999999999999999987543
No 31
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=23.16 E-value=72 Score=28.08 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-+.++++.++|..|-+-+|+.|++-.+.
T Consensus 98 ~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~ 128 (478)
T 2guy_A 98 DDLKALSSALHERGMYLMVDVVANHMGYDGA 128 (478)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCCEEBC
T ss_pred HHHHHHHHHHHHCCCEEEEEECcccCCCCCC
Confidence 4566778899999999999999999987543
No 32
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=23.02 E-value=35 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=24.3
Q ss_pred HHHHHHhCCC---ceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKSCGK---EGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~~g~---~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+.|. +|.+.||||=-.||. .|+++|+.
T Consensus 32 A~~~l~~~gv~~~~i~v~~VPGafEiP~--aa~~la~~ 67 (158)
T 1di0_A 32 FVAELAAKTGGSVEVEIFDVPGAYEIPL--HAKTLART 67 (158)
T ss_dssp HHHHHHHHHTTSEEEEEEEESSGGGHHH--HHHHHHHT
T ss_pred HHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 3466777664 589999999888874 56777764
No 33
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=22.11 E-value=43 Score=26.09 Aligned_cols=33 Identities=3% Similarity=0.024 Sum_probs=24.3
Q ss_pred HHHHHHh-CCC---ceEEEEeccCCCCCcchHHhHhhCC
Q psy7385 16 LERSLKS-CGK---EGTLMWCPSQCGISGNEAVDMAAKN 50 (208)
Q Consensus 16 ~~~~L~~-~g~---~I~l~WVPgH~gi~GNE~AD~~Ak~ 50 (208)
+.+.|.+ .|. +|.+.||||=-.||. .|+++|+.
T Consensus 39 a~~~l~~~~Gv~~~~i~v~~VPGafEiP~--aa~~la~~ 75 (159)
T 1kz1_A 39 AVETMIEKHDVKLENIDIESVPGSWELPQ--GIRASIAR 75 (159)
T ss_dssp HHHHHHHHHCCCGGGEEEEECSSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 3467777 674 599999999888874 56777753
No 34
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=22.04 E-value=85 Score=27.10 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccCCCCCc
Q psy7385 10 LKNLFCLERSLKSCGKEGTLMWCPSQCGISG 40 (208)
Q Consensus 10 i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~G 40 (208)
..++-+.++++.++|..|-+-+|+.|++..+
T Consensus 68 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 98 (405)
T 1ht6_A 68 AAELKSLIGALHGKGVQAIADIVINHRCADY 98 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCCSE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcccCCC
Confidence 3456677789999999999999999998754
No 35
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=20.56 E-value=89 Score=27.36 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccCCCCCc
Q psy7385 10 LKNLFCLERSLKSCGKEGTLMWCPSQCGISG 40 (208)
Q Consensus 10 i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~G 40 (208)
..++-+.++++.++|..|-+-+|+-|++-.+
T Consensus 86 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~ 116 (435)
T 1mxg_A 86 KEELVRLIQTAHAYGIKVIADVVINHRAGGD 116 (435)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCCCE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccCCC
Confidence 4566777889999999999999999998654
No 36
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=20.42 E-value=98 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 10 LKNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 10 i~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
..++-..++++.+.|..|-+-|||.|++-.+.
T Consensus 312 ~~dfk~lV~~~H~~GI~VilD~V~NH~~~~~~ 343 (722)
T 3k1d_A 312 PDDFRALVDALHQAGIGVIVDWVPAHFPKDAW 343 (722)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCCCCTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEeeccCCccc
Confidence 35666778899999999999999999976643
No 37
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=20.02 E-value=1e+02 Score=26.75 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEeccCCCCCcc
Q psy7385 11 KNLFCLERSLKSCGKEGTLMWCPSQCGISGN 41 (208)
Q Consensus 11 ~~I~~~~~~L~~~g~~I~l~WVPgH~gi~GN 41 (208)
.++-+.++++.++|..|-+-+|+-|++..+.
T Consensus 70 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~ 100 (441)
T 1lwj_A 70 REFKEMIEAFHDSGIKVVLDLPIHHTGFLHT 100 (441)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTBCCTTCH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCcccCchH
Confidence 4556677799999999999999999997653
Done!