RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7385
         (208 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.6 bits (84), Expect = 0.005
 Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 32/98 (32%)

Query: 27   GTLMWCPSQCGISGNEAVDMAAKNPTTPIQPLKLCSASDFKPIVAKIIHNMWQTSW---- 82
            G  M         G     M A NP    +     S    + +V ++     +T W    
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPG---RVAASFSQEALQYVVERVGK---RTGWLVEI 1843

Query: 83   -ND-----QI----------------NGNKLKRIKPDK 98
             N      Q                 N  KL++I   +
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.51
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 65  DFKPIVAKIIHNMWQTSWNDQIN-GNKLKRIKPDKKKKPVVENWASRNRDTRYEEVALAR 123
           DF+ +  KI H+   T+WN   +  N L+++K    K  + +N      D +YE +  A 
Sbjct: 499 DFRFLEQKIRHD--STAWNASGSILNTLQQLK--FYKPYICDN------DPKYERLVNA- 547

Query: 124 MRIGHTRLTHSHLFTRSP 141
             I             S 
Sbjct: 548 --ILDFLPKIEENLICSK 563


>2p7s_A Amphinase-2; cytotoxic RNAse, enzyme efficiency, substrate SPE
           hydrolase; HET: NAG; 1.80A {Rana pipiens} PDB: 2p6z_A*
          Length = 114

 Score = 29.0 bits (65), Expect = 0.53
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 146 RQDIRRGPAGKTCCNTSVKAPNRKKEQHCKPH 177
            + I         CN ++  P    +  CKP 
Sbjct: 13  TKHITSQSVADFNCNRTMNDPAYTPDGQCKPI 44


>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural
           protein; 2.15A {Halothiobacillus neapolitanus} SCOP:
           b.40.15.1
          Length = 91

 Score = 27.4 bits (61), Expect = 1.1
 Identities = 3/36 (8%), Positives = 10/36 (27%)

Query: 69  IVAKIIHNMWQTSWNDQINGNKLKRIKPDKKKKPVV 104
            + ++   +  T+    +    L  +         V
Sbjct: 2   KIMQVEKTLVSTNRIADMGHKPLLVVWEKPGAPRQV 37


>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
           mannosyltransferase...; GT-B fold,
           alpha-mannosyltransferase; HET: GDD; 2.00A
           {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
          Length = 394

 Score = 27.7 bits (62), Expect = 3.0
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 119 VALARMRIGHTRL---THSHLFTRSPQPACRQDIRR 151
           +A    + G +++   TH H    S  P  RQ +R+
Sbjct: 101 MAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRK 136


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 7/22 (31%)

Query: 194 NTLKKVQVVLRL------P-LA 208
             LKK+Q  L+L      P LA
Sbjct: 20  QALKKLQASLKLYADDSAPALA 41



 Score = 26.8 bits (58), Expect = 3.8
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 26/52 (50%)

Query: 5  QKLSDLKNLFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAKNPTTPIQ 56
          +K + LK L   + SLK        ++             D A   P   I+
Sbjct: 18 EKQA-LKKL---QASLK--------LYAD-----------DSA---PALAIK 43


>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
           nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
           diarylpyrimidine, DAPY, DNA recombination; HET: T27;
           1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
           3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
           1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
           2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
          Length = 557

 Score = 27.4 bits (61), Expect = 4.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 29  LMWCPSQCGISGNEAVD 45
           L W P+  GI GNE VD
Sbjct: 535 LAWVPAHKGIGGNEQVD 551


>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
           deoxyguanosinetriphosphate triphsphohydrolase,
           pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
           syringae PV}
          Length = 451

 Score = 26.6 bits (59), Expect = 6.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 128 HTRLTHS 134
           HTRLTHS
Sbjct: 61  HTRLTHS 67


>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
           10395N, triphosphohydro PSI-2, protein structure
           initiative; 1.95A {Leeuwenhoekiella blandensis}
          Length = 444

 Score = 26.6 bits (59), Expect = 7.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 128 HTRLTHS 134
           HTRLTHS
Sbjct: 63  HTRLTHS 69


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.131    0.410 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,058,593
Number of extensions: 166069
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 14
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)