RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7385
         (208 letters)



>d2rcfa1 b.40.15.1 (A:1-82) Carboxysome shell protein {Thiobacillus
           neapolitanus [TaxId: 927]}
          Length = 82

 Score = 27.3 bits (61), Expect = 0.44
 Identities = 3/36 (8%), Positives = 10/36 (27%)

Query: 69  IVAKIIHNMWQTSWNDQINGNKLKRIKPDKKKKPVV 104
            + ++   +  T+    +    L  +         V
Sbjct: 2   KIMQVEKTLVSTNRIADMGHKPLLVVWEKPGAPRQV 37


>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 26.8 bits (58), Expect = 1.1
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 11  KNLFCLERSLKSCGKEGTLMWCPSQCGISGNEAVDMAAK 49
             +           +   + W P+  GI GN+ VD    
Sbjct: 85  SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVS 123


>d2qw7a1 b.40.15.1 (A:1-96) Carbon dioxide concentrating mechanism
           protein CcmL {Synechocystis sp. (strain PCC 6803)
           [TaxId: 1148]}
          Length = 96

 Score = 25.0 bits (55), Expect = 3.6
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 69  IVAKIIHNMWQTSWNDQINGNKLKRIKP-DKKKKP 102
            +AK++  +  TS    + G KL  ++  D K +P
Sbjct: 2   QLAKVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQP 36


>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain
           {Serratia marcescens [TaxId: 615]}
          Length = 358

 Score = 25.5 bits (55), Expect = 5.4
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 32  CPSQCGISGNEAVDMAAKNPTTPIQPLKLCSASDFKPIVAKIIHNMWQTSWNDQINGNKL 91
           C         + ++ + +      Q  +    S   P  A        T+W+D   GN  
Sbjct: 63  CGGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGN-F 121

Query: 92  KRIKPDKKKKPVVENWAS 109
            ++   K+  P ++   S
Sbjct: 122 GQLMALKQAHPDLKILPS 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.410 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 776,993
Number of extensions: 34853
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 10
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)