BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7387
         (196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CQX|C Chain C, Chaperone Complex
 pdb|3CQX|D Chain D, Chaperone Complex
 pdb|3D0T|A Chain A, Structure Of The Bnb Domain Of The Hsp70 Cochaperone Bag2
 pdb|3D0T|B Chain B, Structure Of The Bnb Domain Of The Hsp70 Cochaperone Bag2
 pdb|3D0T|C Chain C, Structure Of The Bnb Domain Of The Hsp70 Cochaperone Bag2
 pdb|3D0T|D Chain D, Structure Of The Bnb Domain Of The Hsp70 Cochaperone Bag2
          Length = 88

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%)

Query: 110 ESLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQ 169
           ESL     +ID ++    +     ++  +S  +ACSS    G  D+ F+  V+GCAL+DQ
Sbjct: 7   ESLKHATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALEDQ 66

Query: 170 KRIRQRLNGLL 180
           K+I++RL  LL
Sbjct: 67  KKIKRRLETLL 77


>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
           Oxidoreductase From Staphylococcus Aureus
          Length = 419

 Score = 30.0 bits (66), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 120 DNLIIGMRETPEQTQTKCLSY 140
           DN I+G R TPE+T+   L Y
Sbjct: 241 DNFILGFRATPEETRGSDLGY 261


>pdb|1NF1|A Chain A, The Gap Related Domain Of Neurofibromin
          Length = 333

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 32  GQLDQVEAHVEE--LRKMASQLENEKDQILTTIHTLKNMDSLNDIGDNDKDDILRYLDRI 89
           G LD+    + E  L+ M+  L++  + +L T    ++M   ND   ++ D   R+   I
Sbjct: 207 GILDKKPPPIIERGLKLMSKILQSIANHVLFTKE--EHMRPFNDFVKSNFDAARRFFLDI 264

Query: 90  SLRCTTIDVCVHTLR--SDDQVESLHQV 115
           +  C T D   H+L   SD  V +LH++
Sbjct: 265 ASDCPTSDAVNHSLSFISDGNVLALHRL 292


>pdb|2I1S|A Chain A, Crystal Structure Of Protein Of Unknown Function Mm3350
           From Methanosarcina Mazei Go1
 pdb|2I1S|B Chain B, Crystal Structure Of Protein Of Unknown Function Mm3350
           From Methanosarcina Mazei Go1
          Length = 188

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 32  GQLDQVEAHVEELRKMASQLENEKDQILTTIHTLKNMDSL--NDIGDN 77
           G LD++ A  ++       L +EK   L+   TL+N ++L   D GDN
Sbjct: 63  GMLDKIGAEGDDFDAFGGPLVSEKKAKLSDYFTLENKEALYTYDFGDN 110


>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
 pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
          Length = 832

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 79  KDDILRYLDRISLRCTTIDVC 99
           K D+L YL RI+L C  +++C
Sbjct: 692 KQDLLAYLQRIALYCHQLNIC 712


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,612,637
Number of Sequences: 62578
Number of extensions: 211522
Number of successful extensions: 649
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 23
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)