Query psy7387
Match_columns 196
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 16:55:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cqx_C BAG family molecular ch 100.0 3.4E-46 1.2E-50 281.6 8.5 85 107-193 4-88 (88)
2 3m48_A General control protein 81.6 1.6 5.4E-05 27.6 3.4 29 34-62 2-30 (33)
3 1kd8_B GABH BLL, GCN4 acid bas 69.4 11 0.00037 24.2 4.9 31 34-64 3-33 (36)
4 1kd8_A GABH AIV, GCN4 acid bas 64.8 12 0.00042 23.9 4.5 31 34-64 3-33 (36)
5 3c3g_A Alpha/beta peptide with 61.4 14 0.00049 23.2 4.2 30 34-63 2-31 (33)
6 2oxj_A Hybrid alpha/beta pepti 60.8 18 0.0006 22.9 4.6 30 34-63 3-32 (34)
7 3c3f_A Alpha/beta peptide with 58.6 17 0.00058 23.0 4.2 30 34-63 3-32 (34)
8 2hy6_A General control protein 57.9 17 0.00058 23.0 4.1 30 34-63 3-32 (34)
9 3vmx_A Voltage-gated hydrogen 57.2 29 0.00098 23.4 5.5 36 28-63 7-42 (48)
10 2wq1_A General control protein 54.1 27 0.00092 22.0 4.6 29 34-62 2-30 (33)
11 2r2v_A GCN4 leucine zipper; co 53.9 29 0.00098 22.0 4.7 30 34-63 3-32 (34)
12 2jee_A YIIU; FTSZ, septum, coi 49.0 22 0.00075 26.1 4.2 28 31-58 5-32 (81)
13 1uo4_A General control protein 47.4 24 0.00083 22.3 3.6 29 34-62 3-31 (34)
14 1gl2_A Endobrevin; membrane pr 46.6 12 0.00042 25.4 2.4 35 103-137 2-36 (65)
15 2bni_A General control protein 46.3 23 0.0008 22.4 3.4 30 34-63 3-32 (34)
16 3bbz_A P protein, phosphoprote 39.2 17 0.0006 24.5 2.2 40 132-174 2-42 (49)
17 3kyj_A CHEA3, putative histidi 38.9 1.3E+02 0.0044 23.0 10.3 107 34-148 17-139 (144)
18 1deb_A APC protein, adenomatou 33.8 42 0.0015 23.0 3.4 24 33-56 4-27 (54)
19 1yf2_A Type I restriction-modi 33.4 64 0.0022 26.4 5.2 41 22-62 376-416 (425)
20 2a3d_A Protein (de novo three- 32.7 15 0.00052 26.2 1.1 16 40-55 52-67 (73)
21 1ydx_A Type I restriction enzy 31.3 70 0.0024 26.7 5.2 40 23-62 353-392 (406)
22 1yf2_A Type I restriction-modi 31.1 74 0.0025 26.0 5.2 43 22-64 166-208 (425)
23 1dh3_A Transcription factor CR 30.6 64 0.0022 21.4 3.9 27 32-58 22-48 (55)
24 4e61_A Protein BIM1; EB1-like 29.2 87 0.003 23.9 4.9 33 34-66 20-52 (106)
25 3hnw_A Uncharacterized protein 27.5 66 0.0023 25.0 4.1 56 89-144 3-67 (138)
26 1jnm_A Proto-oncogene C-JUN; B 27.4 1.1E+02 0.0039 20.2 4.8 35 32-66 22-56 (62)
27 2zvf_A Alanyl-tRNA synthetase; 26.1 1.6E+02 0.0053 22.2 6.0 68 22-92 29-97 (171)
28 4fye_A SIDF, inhibitor of grow 24.8 56 0.0019 30.9 3.7 56 111-167 571-639 (761)
29 3tq7_B Microtubule-associated 24.6 69 0.0024 23.3 3.5 31 35-65 4-34 (82)
30 3okq_A BUD site selection prot 22.5 67 0.0023 25.8 3.3 27 24-50 20-46 (141)
31 2l5g_A GPS2 protein, G protein 22.3 1.4E+02 0.0049 19.1 4.2 28 33-60 9-36 (38)
32 1gd2_E Transcription factor PA 22.1 1E+02 0.0035 21.7 3.8 36 31-66 28-63 (70)
33 1ydx_A Type I restriction enzy 21.5 1.4E+02 0.0046 24.9 5.2 42 23-64 165-206 (406)
34 4ew8_A Sensor protein DIVL; si 21.0 2.8E+02 0.0094 21.0 6.6 48 20-67 5-53 (268)
35 1m46_B IQ4, IQ4 motif from MYO 20.2 51 0.0017 19.5 1.6 12 167-178 8-19 (26)
No 1
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=100.00 E-value=3.4e-46 Score=281.63 Aligned_cols=85 Identities=34% Similarity=0.575 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHhccchhhhHHHHHHHHHHHHHHHHH
Q psy7387 107 DQVESLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQKRIRQRLNGLLDYMTKE 186 (196)
Q Consensus 107 ~QEeAL~qvn~lID~lv~~~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vIgCtlDDQKrIKkRLe~Ll~yi~k~ 186 (196)
+||+|||+||+|||++|++|++||++||++|++|||||||++|+||+||||||+|||||+|||||||||||+||+|| +
T Consensus 4 ~Qe~aL~~vn~lID~~v~k~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlDDQKkIkkRLe~Ll~~i--d 81 (88)
T 3cqx_C 4 GSEESLKHATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNI--D 81 (88)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHhhHHHHHHHHHHHHHHH--H
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHhhhcC
Q psy7387 187 KWKKAIQ 193 (196)
Q Consensus 187 ~~~k~i~ 193 (196)
+++|+|+
T Consensus 82 ~aek~i~ 88 (88)
T 3cqx_C 82 NSDKAIK 88 (88)
T ss_dssp HHHHTC-
T ss_pred HhhhcCC
Confidence 9999986
No 2
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=81.62 E-value=1.6 Score=27.63 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTI 62 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl 62 (196)
..|||.+||.|...-+.||.|=+.|=..|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 46999999999999999999988775544
No 3
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.39 E-value=11 Score=24.20 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIHT 64 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~ 64 (196)
..|||.+||.|-..-+.||.|=..|=..+..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999888777654
No 4
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.76 E-value=12 Score=23.91 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIHT 64 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~ 64 (196)
..|||.+||.|=..-+.||.|=..|=..+.+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4699999999999999999998888776653
No 5
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=61.43 E-value=14 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
+.|||-+||.|=..-..||.|-..|=..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 469999999999999999999888876653
No 6
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=60.80 E-value=18 Score=22.94 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
+.|||-+||.|=..-..||.|=+.|=..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 579999999999999999999888876653
No 7
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.61 E-value=17 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
+.|||-+||.|=..-..||.|=..|=..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 579999999999999999999888876653
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=57.89 E-value=17 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
..|||-+||.|=..-..||.|=..|-..+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 469999999999999999999988877764
No 9
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=57.20 E-value=29 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=31.5
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 28 DHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 28 ~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
.+|=++.++|-.+|..|-.....+|+|.+.|=..|.
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 467889999999999999999999999998866553
No 10
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=54.07 E-value=27 Score=21.95 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTI 62 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl 62 (196)
+.|||-+||.|=..-..||.|=..|-..+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46999999999999999999988876655
No 11
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=53.89 E-value=29 Score=21.97 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
+.|||-.||.|=..-..|+.|-..|-..|.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 579999999999999999999888877765
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.99 E-value=22 Score=26.12 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhHHHH
Q psy7387 31 LGQLDQVEAHVEELRKMASQLENEKDQI 58 (196)
Q Consensus 31 l~~LDqlE~rVE~LRk~A~~LE~EKe~L 58 (196)
+++||+||.+|..+=+.-..|+.|-+-|
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888877666555544443333
No 13
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=47.39 E-value=24 Score=22.29 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTI 62 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl 62 (196)
+.|||-+||.|=..-..||+|-..|=..|
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46999999999999999999987775544
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=46.61 E-value=12 Score=25.41 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=23.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy7387 103 LRSDDQVESLHQVNCLIDNLIIGMRETPEQTQTKC 137 (196)
Q Consensus 103 ~Rn~~QEeAL~qvn~lID~lv~~~~~D~~~ar~~c 137 (196)
+|||.+.+.|.+++.=+|++..-|+++++..-+|-
T Consensus 2 ~~~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~Rg 36 (65)
T 1gl2_A 2 SHMSAGNDRVRNLQSEVEGVKNIMTQNVERILARG 36 (65)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999998765553
No 15
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=46.32 E-value=23 Score=22.38 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
+.|||-+||.|=..-..|+.|-..|=..|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 469999999999999999999888766553
No 16
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=39.19 E-value=17 Score=24.54 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhhhHHHhccchhhh-HHHHH
Q psy7387 132 QTQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQ-KRIRQ 174 (196)
Q Consensus 132 ~ar~~c~~ylnACss~~~~gp~DqkFqs~vIgCtlDDQ-KrIKk 174 (196)
+.|-.+..+.+-|-|.+ ..=++|+.-|=+|+-+|| |.|||
T Consensus 2 G~Kltl~~l~kdCi~np---~~r~~Fe~ki~~~~tE~q~k~iKr 42 (49)
T 3bbz_A 2 GQKVMITKMITDSVANP---QMKQAFEQRLAKASTEDALNDIKR 42 (49)
T ss_dssp CHHHHHHHHHHHHCCSH---HHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35778889999998775 577899999999999999 44544
No 17
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=38.93 E-value=1.3e+02 Score=23.00 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhh------HHHHHHHHHhhccchhhccCCcchH--HHHHHHHHHHhhccceeEEEEeccCC
Q psy7387 34 LDQVEAHVEELRKMASQLENE------KDQILTTIHTLKNMDSLNDIGDNDK--DDILRYLDRISLRCTTIDVCVHTLRS 105 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~E------Ke~Ll~sl~~i~~s~~l~~l~e~er--Eei~~~a~RL~~R~~TVeV~V~T~Rn 105 (196)
++..+.+++.|...-..||.. -..|+..+||||.+--+.++..=.. -.++.+.+++-....+ -+
T Consensus 17 leEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~--------~~ 88 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVP--------MD 88 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCC--------CC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCC--------CC
Confidence 455555666666666666543 3579999999999999998865332 1233334444332222 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHhccCCCC
Q psy7387 106 DDQVESLHQVNCLIDNLIIGMRE--------TPEQTQTKCLSYVAACSSSS 148 (196)
Q Consensus 106 ~~QEeAL~qvn~lID~lv~~~~~--------D~~~ar~~c~~ylnACss~~ 148 (196)
+.--+.|.++--.|..++..+.. ++..--+++..|.+.||-+-
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 139 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEETAASRADVEGTGSEALMDQLRSKIARCSRSH 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGGHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHhCcCccc
Confidence 56666666666666666665543 23444678899999998653
No 18
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.81 E-value=42 Score=23.04 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhHH
Q psy7387 33 QLDQVEAHVEELRKMASQLENEKD 56 (196)
Q Consensus 33 ~LDqlE~rVE~LRk~A~~LE~EKe 56 (196)
.-|||=.+||.||++-+.|..|-+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 469999999999999999988755
No 19
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=33.38 E-value=64 Score=26.42 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy7387 22 NDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTI 62 (196)
Q Consensus 22 ~~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl 62 (196)
.+..--.++...|+.++..++.+++.-..|++-|.+||..+
T Consensus 376 Ppl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 376 PPLEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999999999999999876
No 20
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=32.72 E-value=15 Score=26.19 Aligned_cols=16 Identities=44% Similarity=0.574 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhHhhH
Q psy7387 40 HVEELRKMASQLENEK 55 (196)
Q Consensus 40 rVE~LRk~A~~LE~EK 55 (196)
.||.|||+|+++.+|-
T Consensus 52 evealrkeaaairdel 67 (73)
T 2a3d_A 52 EVEALRKEAAAIRDEL 67 (73)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999998774
No 21
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=31.31 E-value=70 Score=26.72 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy7387 23 DLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTI 62 (196)
Q Consensus 23 ~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl 62 (196)
+..--.++...|+.++..++.+++....|++-|.+||..+
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444568999999999999999999999999999999876
No 22
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=31.06 E-value=74 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=36.7
Q ss_pred CCCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q psy7387 22 NDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIHT 64 (196)
Q Consensus 22 ~~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~ 64 (196)
.|..--.++...||+++..++.+++.-..|++-|..|+..+=+
T Consensus 166 Ppl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 166 PPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567899999999999999999999999999999887654
No 23
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.63 E-value=64 Score=21.39 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhHHHH
Q psy7387 32 GQLDQVEAHVEELRKMASQLENEKDQI 58 (196)
Q Consensus 32 ~~LDqlE~rVE~LRk~A~~LE~EKe~L 58 (196)
.-++.||.+|+.|.++-..|..+-..|
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888777766666655443
No 24
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.22 E-value=87 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhhc
Q psy7387 34 LDQVEAHVEELRKMASQLENEKDQILTTIHTLK 66 (196)
Q Consensus 34 LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i~ 66 (196)
+..|...+..|+..+..||.|||+-+..|..|-
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788899999999999999999987653
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.47 E-value=66 Score=25.01 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=35.3
Q ss_pred HhhccceeEEEE----eccCChHHHHHHHHHHHHHHHHHHHhhcC---H--HHHHHHHHHHHhcc
Q psy7387 89 ISLRCTTIDVCV----HTLRSDDQVESLHQVNCLIDNLIIGMRET---P--EQTQTKCLSYVAAC 144 (196)
Q Consensus 89 L~~R~~TVeV~V----~T~Rn~~QEeAL~qvn~lID~lv~~~~~D---~--~~ar~~c~~ylnAC 144 (196)
.|+..-+|+|.+ -|+..|.+++.|++|-.++|.=+..++.. | ...+.-.++-+|.|
T Consensus 3 ~Ms~k~~V~V~I~Gk~Y~i~g~e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNia 67 (138)
T 3hnw_A 3 AMSSKNTAEVILGGKVIKLGGYESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIA 67 (138)
T ss_dssp ------CEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEECCEEEEecCCCcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence 444444566654 46777788999999999999999999865 2 22344445555554
No 26
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.36 E-value=1.1e+02 Score=20.21 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhhc
Q psy7387 32 GQLDQVEAHVEELRKMASQLENEKDQILTTIHTLK 66 (196)
Q Consensus 32 ~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i~ 66 (196)
+-.+.||..|+.|-..-..|..+-..|-..+..++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777766666665554
No 27
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.11 E-value=1.6e+02 Score=22.23 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhhccchhhc-cCCcchHHHHHHHHHHHhhc
Q psy7387 22 NDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIHTLKNMDSLN-DIGDNDKDDILRYLDRISLR 92 (196)
Q Consensus 22 ~~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i~~s~~l~-~l~e~erEei~~~a~RL~~R 92 (196)
....+-++|.+-+..++..+++|+...+..+ -..|+.....+..-..+. .+ +.+-+++..+++.|..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~--~~~l~~~~~~i~g~~~~~~~~-~~d~~~lr~~~~~l~~~ 97 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW--ADILMERAEEFDSMKVVAEVV-DADMQALQKLAERLAEK 97 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTTCEESSSCEEEEEEC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcEEeCCEEEEEEEe-CCCHHHHHHHHHHHhcC
Confidence 3344556666677777777777776644432 122333222222222332 34 67889999999999887
No 28
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=24.81 E-value=56 Score=30.95 Aligned_cols=56 Identities=21% Similarity=0.444 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCCC---------CC--CCCcchhhhHH--Hhccchh
Q psy7387 111 SLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSS---------ST--VGNGDKTFEHA--VLGCALD 167 (196)
Q Consensus 111 AL~qvn~lID~lv~~~~~D~~~ar~~c~~ylnACss~---------~~--~gp~DqkFqs~--vIgCtlD 167 (196)
||+....-|--+|..-.-|| .+|.|++-|+|+|.+- .+ .|.-.-|.|+. -++|-+|
T Consensus 571 alqelkeqispviqnketdp-etksrlqhfynscayltqaqelyyentwhhgknnfklqtlmaslsceld 639 (761)
T 4fye_A 571 ALQELKEQISPVIQNKETDP-ETKSRLQHFYNSCAYLTQAQELYYENTWHHGKNNFKLQTLMASLSCELD 639 (761)
T ss_dssp HHHHHHHHHHHHHTCTTSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTCTTSGGGTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcChhhcCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHhhccccc
Confidence 34444444444555545688 6899999999999763 22 44444455553 4678776
No 29
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=24.62 E-value=69 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHhh
Q psy7387 35 DQVEAHVEELRKMASQLENEKDQILTTIHTL 65 (196)
Q Consensus 35 DqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i 65 (196)
+.|-..+..|+..+..||.||++-+..|..|
T Consensus 4 ~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 34 (82)
T 3tq7_B 4 LELNQQLVDLKLTVDGLEKERDFYFSKLRDI 34 (82)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999999998765
No 30
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.54 E-value=67 Score=25.78 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCchhhHhhhHHHHHHHHHHHHHHHHh
Q psy7387 24 LSLKDHLLGQLDQVEAHVEELRKMASQ 50 (196)
Q Consensus 24 ~~~~~rll~~LDqlE~rVE~LRk~A~~ 50 (196)
...|++|+.-.|-|.--||.||++.+.
T Consensus 20 ~~~sd~LvtkVDDLQD~VE~LRkDV~~ 46 (141)
T 3okq_A 20 GDLSDTLLSKVDDLQDVIEIMRKDVAE 46 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356899999999999999999999864
No 31
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.28 E-value=1.4e+02 Score=19.14 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhHHHHHH
Q psy7387 33 QLDQVEAHVEELRKMASQLENEKDQILT 60 (196)
Q Consensus 33 ~LDqlE~rVE~LRk~A~~LE~EKe~Ll~ 60 (196)
+|...--.|.+|++.-..|.+||-+|+-
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788888888899999988874
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.06 E-value=1e+02 Score=21.66 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhhc
Q psy7387 31 LGQLDQVEAHVEELRKMASQLENEKDQILTTIHTLK 66 (196)
Q Consensus 31 l~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i~ 66 (196)
-.-+..||.+|..|.+.-..+..|-+.|-..+..++
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999998888888888877777666654
No 33
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=21.53 E-value=1.4e+02 Score=24.93 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q psy7387 23 DLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIHT 64 (196)
Q Consensus 23 ~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~ 64 (196)
+.+--.++...||.++..++...+.-..|++-|.+|+..+=+
T Consensus 165 ~l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f~ 206 (406)
T 1ydx_A 165 NKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFS 206 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344557899999999999999999999999999999876643
No 34
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=21.00 E-value=2.8e+02 Score=21.04 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=15.2
Q ss_pred cCCCCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHH-Hhhcc
Q psy7387 20 VENDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTI-HTLKN 67 (196)
Q Consensus 20 ~~~~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl-~~i~~ 67 (196)
+..+..+..+.-.....|+..+++.++.....++.+..++..+ |.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~ 53 (268)
T 4ew8_A 5 HHHHHHSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVGNVSYELRT 53 (268)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444445555555555555555566655555443 44443
No 35
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.20 E-value=51 Score=19.46 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHH
Q psy7387 167 DDQKRIRQRLNG 178 (196)
Q Consensus 167 DDQKrIKkRLe~ 178 (196)
.=||+|||-|..
T Consensus 8 nlqkkirkelkq 19 (26)
T 1m46_B 8 NLQKKIRKELKQ 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 459999998753
Done!