Query psy7387
Match_columns 196
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 16:55:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7387.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7387hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yf2a2 d.287.1.2 (A:221-425) 71.3 3.4 0.00025 28.4 5.2 42 22-63 156-197 (205)
2 d1yf2a1 d.287.1.2 (A:1-220) Bi 61.2 7.4 0.00054 27.8 5.5 43 22-64 166-208 (220)
3 d1ydxa1 d.287.1.2 (A:1-193) Bi 55.6 9.9 0.00072 26.3 5.2 39 27-65 146-184 (193)
4 d1ydxa2 d.287.1.2 (A:194-374) 49.2 14 0.001 25.3 5.1 40 23-62 137-176 (181)
5 d1bg1a1 a.47.1.1 (A:136-321) S 45.1 59 0.0043 24.6 10.0 24 35-58 7-30 (186)
6 d1wu9a1 a.245.1.1 (A:191-249) 28.9 51 0.0037 21.1 4.9 32 35-66 4-35 (59)
7 d1t3ua_ d.244.1.1 (A:) ZapA ho 28.3 19 0.0014 23.5 2.7 43 23-65 16-58 (92)
8 d1cf7b_ a.4.5.17 (B:) Cell cyc 28.3 31 0.0023 23.6 4.0 16 168-183 48-63 (82)
9 d1olma1 a.5.3.1 (A:1-75) Super 27.8 8.3 0.00061 24.8 0.8 40 105-147 9-48 (75)
10 d1avca1 a.65.1.1 (A:10-350) An 23.8 57 0.0041 26.4 5.5 44 133-179 85-128 (341)
11 d1n00a_ a.65.1.1 (A:) Annexin 22.2 64 0.0047 25.6 5.4 51 124-179 80-130 (318)
12 d1axna_ a.65.1.1 (A:) Annexin 21.3 60 0.0044 25.9 5.1 112 41-179 24-135 (323)
13 d1dlwa_ a.1.1.1 (A:) Protozoan 20.5 1.1E+02 0.0078 19.9 7.2 69 115-183 12-113 (116)
No 1
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=71.26 E-value=3.4 Score=28.44 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=36.5
Q ss_pred CCCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q psy7387 22 NDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIH 63 (196)
Q Consensus 22 ~~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~ 63 (196)
.+.+--.++.+.|+.++..++.+++....|++-|..||..+-
T Consensus 156 P~~~eQ~~I~~~l~~id~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 156 PPLEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556789999999999999999999999999999998764
No 2
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=61.24 E-value=7.4 Score=27.77 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q psy7387 22 NDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIHT 64 (196)
Q Consensus 22 ~~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~ 64 (196)
.+.+--.++.+.|+.++..++.+.+....|++-|.+||..+-+
T Consensus 166 Pp~~eQ~~I~~~l~~i~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 166 PPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455567899999999999999999999999999999998864
No 3
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=55.55 E-value=9.9 Score=26.29 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=35.2
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhh
Q psy7387 27 KDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIHTL 65 (196)
Q Consensus 27 ~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i 65 (196)
-.++...|+.++..++.+.+.-..|++-|+.|+..|-+.
T Consensus 146 Q~~I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~lft~ 184 (193)
T d1ydxa1 146 QHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFSL 184 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 468899999999999999999999999999999887653
No 4
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=49.24 E-value=14 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=34.4
Q ss_pred CCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q psy7387 23 DLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTI 62 (196)
Q Consensus 23 ~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl 62 (196)
+..--.++...|+.++..++.+.+.-..|++-|.+||..|
T Consensus 137 ~l~eQ~~I~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll~~l 176 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 176 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999999999999999999998654
No 5
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.14 E-value=59 Score=24.63 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHH
Q psy7387 35 DQVEAHVEELRKMASQLENEKDQI 58 (196)
Q Consensus 35 DqlE~rVE~LRk~A~~LE~EKe~L 58 (196)
.+|+.+|+.||.....+|++.-.|
T Consensus 7 ~ei~~~v~~l~~~~q~~e~~ik~L 30 (186)
T d1bg1a1 7 QMLEQHLQDVRKRVQDLEQKMKVV 30 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888877777665443
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.89 E-value=51 Score=21.08 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHhhc
Q psy7387 35 DQVEAHVEELRKMASQLENEKDQILTTIHTLK 66 (196)
Q Consensus 35 DqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i~ 66 (196)
.+|-..+..|+.....||.||++-+.-|..|-
T Consensus 4 ~~L~~ei~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 4 AELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999888764
No 7
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.31 E-value=19 Score=23.49 Aligned_cols=43 Identities=7% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCchhhHhhhHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhh
Q psy7387 23 DLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQILTTIHTL 65 (196)
Q Consensus 23 ~~~~~~rll~~LDqlE~rVE~LRk~A~~LE~EKe~Ll~sl~~i 65 (196)
+.+.-++|.+.-..|+.++..+|+.+..+-.+|=.+|.+|.--
T Consensus 16 ~~~eee~l~~aA~~ln~k~~~l~~~~~~~~~~~~lvmaaLnla 58 (92)
T d1t3ua_ 16 PDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAALNIT 58 (92)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444568999999999999999999999999998888887643
No 8
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.28 E-value=31 Score=23.59 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHH
Q psy7387 168 DQKRIRQRLNGLLDYM 183 (196)
Q Consensus 168 DQKrIKkRLe~Ll~yi 183 (196)
|||.||||.=--|+=+
T Consensus 48 d~KNIRRRVYDALNVL 63 (82)
T d1cf7b_ 48 DQKNIRRRVYDALNVL 63 (82)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHH
Confidence 9999999988777766
No 9
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.76 E-value=8.3 Score=24.77 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCCC
Q psy7387 105 SDDQVESLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSS 147 (196)
Q Consensus 105 n~~QEeAL~qvn~lID~lv~~~~~D~~~ar~~c~~ylnACss~ 147 (196)
++.|+++|++....|.+.... .+...-..+..|+.||.-.
T Consensus 9 t~~q~~~l~elr~~l~~~~~~---~~~~dd~~LlRFLrAr~fd 48 (75)
T d1olma1 9 SPRQKEALAKFRENVQDVLPA---LPNPDDYFLLRWLRARSFD 48 (75)
T ss_dssp CHHHHHHHHHHHHHHGGGGGG---SSCCCHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHhhccc---CCCCCHHHHHHHHHHCCCC
Confidence 578899999988887764333 1222345688899888654
No 10
>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.81 E-value=57 Score=26.40 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhhhHHHhccchhhhHHHHHHHHHH
Q psy7387 133 TQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQKRIRQRLNGL 179 (196)
Q Consensus 133 ar~~c~~ylnACss~~~~gp~DqkFqs~vIgCtlDDQKrIKkRLe~L 179 (196)
+...++..+.||.+ .|....-.=.||++|+.++=..||+--+.+
T Consensus 85 ~~~dA~~l~~A~kG---~gtde~~LieIL~trs~~ei~~ik~aY~~~ 128 (341)
T d1avca1 85 AYADAKEIKDAISG---IGTDEKCLIEILASRTNEQIHQLVAAYKDA 128 (341)
T ss_dssp HHHHHHHHHHHHSS---SSCCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCcchhhhhhhhhcCCHHHHHHHHHHHHHh
Confidence 44557788889864 356667788899999999999999876543
No 11
>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum) [TaxId: 3635]}
Probab=22.19 E-value=64 Score=25.59 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=36.5
Q ss_pred HHhhcCHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHhccchhhhHHHHHHHHHH
Q psy7387 124 IGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQKRIRQRLNGL 179 (196)
Q Consensus 124 ~~~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vIgCtlDDQKrIKkRLe~L 179 (196)
..+..+| ....+.....||.+- |....-.=.||++||.++=..||+--+..
T Consensus 80 ~~l~~~p--~~~dA~~l~~A~kg~---gtde~~LieIl~~rs~~e~~~ik~aY~~~ 130 (318)
T d1n00a_ 80 LLWALDP--AERDALLANEATKRW---TSSNQVLMEIACTRSANQLLHARQAYHAR 130 (318)
T ss_dssp HHHHSCH--HHHHHHHHHHHHSSS---CSSCHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhcCCH--HHHHHHHHHHHhhCC---CcchhhHhhHhhcCCcHHHHHHHHHHHHH
Confidence 3333455 345677788899643 45667888999999999999998775544
No 12
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.26 E-value=60 Score=25.93 Aligned_cols=112 Identities=10% Similarity=0.143 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHhhccchhhccCCcchHHHHHHHHHHHhhccceeEEEEeccCChHHHHHHHHHHHHHH
Q psy7387 41 VEELRKMASQLENEKDQILTTIHTLKNMDSLNDIGDNDKDDILRYLDRISLRCTTIDVCVHTLRSDDQVESLHQVNCLID 120 (196)
Q Consensus 41 VE~LRk~A~~LE~EKe~Ll~sl~~i~~s~~l~~l~e~erEei~~~a~RL~~R~~TVeV~V~T~Rn~~QEeAL~qvn~lID 120 (196)
+++||++-..+=-+.+.|+. .|...+..+|..|...=..+.++-+.-.+.-.+. +=..
T Consensus 24 a~~L~kA~kg~gtDe~~ii~---------IL~~rs~~qr~~I~~~Y~~~ygkdL~~~lk~els-------------G~f~ 81 (323)
T d1axna_ 24 AEAIQKAIRGIGTDEKMLIS---------ILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLS-------------GHFE 81 (323)
T ss_dssp HHHHHHHHSSSSCCHHHHHH---------HHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCC-------------HHHH
T ss_pred HHHHHHHhhCCCCCHHHHHH---------HHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHhC-------------chHH
Confidence 77777754333222234443 3445566667777766666666665333332221 1122
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHhccchhhhHHHHHHHHHH
Q psy7387 121 NLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQKRIRQRLNGL 179 (196)
Q Consensus 121 ~lv~~~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vIgCtlDDQKrIKkRLe~L 179 (196)
.++..+-.+| +.-.+.....||.+. |....-.=.+|++|+.++=..||+--+.+
T Consensus 82 ~~l~~l~~~p--~~~dA~~l~~A~kg~---gtde~~Lieil~~rs~~e~~~ik~aY~~~ 135 (323)
T d1axna_ 82 HLMVALVTPP--AVFDAKQLKKSMKGA---GTNEDALIEILTTRTSRQMKDISQAYYTV 135 (323)
T ss_dssp HHHHHHHSCH--HHHHHHHHHHHHCSS---SCCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH--HHHHHHHHHHHHhcc---CCchHHhhhhhhcCCHHHHHHHHHHHHhh
Confidence 2233334455 355677788899653 45566677799999999999998866544
No 13
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=20.52 E-value=1.1e+02 Score=19.91 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcCH-----------HHHHHHHHHHHhccCCCCC-------------CCCcchhhhHHH---------
Q psy7387 115 VNCLIDNLIIGMRETP-----------EQTQTKCLSYVAACSSSST-------------VGNGDKTFEHAV--------- 161 (196)
Q Consensus 115 vn~lID~lv~~~~~D~-----------~~ar~~c~~ylnACss~~~-------------~gp~DqkFqs~v--------- 161 (196)
+..++|..-.++..|| ..-+.+...|+..+...++ .+-.+.-|+..+
T Consensus 12 I~~lv~~fY~~i~~d~~l~~~F~~~d~~~~~~~~~~fl~~~~GGp~~Y~g~~m~~~H~~~~I~~~~fd~~~~~l~~al~e 91 (116)
T d1dlwa_ 12 VQAVTAQFYANIQADATVATFFNGIDMPNQTNKTAAFLCAALGGPNAWTGRNLKEVHANMGVSNAQFTTVIGHLRSALTG 91 (116)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGGTTCCHHHHHHHHHHHHHHHTTCSSCCCSCCHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCCCCccHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455566666666555 6777788888887776543 345566666543
Q ss_pred hccchhhhHHHHHHHHHHHHHH
Q psy7387 162 LGCALDDQKRIRQRLNGLLDYM 183 (196)
Q Consensus 162 IgCtlDDQKrIKkRLe~Ll~yi 183 (196)
.|...+.++.+...++++-+.|
T Consensus 92 ~~v~~~~~~e~~~~~~~lr~~I 113 (116)
T d1dlwa_ 92 AGVAAALVEQTVAVAETVRGDV 113 (116)
T ss_dssp TTCCHHHHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcc
Confidence 3455666788888887776665
Done!