RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7387
(196 letters)
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein
complex, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; 2.30A {Mus musculus} PDB:
3d0t_A
Length = 88
Score = 91.2 bits (226), Expect = 1e-24
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 108 QVESLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALD 167
ESL +ID ++ + ++ +S +ACSS G D+ F+ V+GCAL+
Sbjct: 5 SEESLKHATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALE 64
Query: 168 DQKRIRQRLNGLLDYMTK 185
DQK+I++RL LL +
Sbjct: 65 DQKKIKRRLETLLRNIDN 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 3e-04
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 34/143 (23%)
Query: 48 ASQLENEKDQILTTIHTLKNMDSLNDIGDNDKDDIL----RYLDRIS-----LRCTTIDV 98
ASQL ++Q + + D++ ++L +S + D
Sbjct: 30 ASQL---QEQFNKILPE----PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 99 CVHT---------LRSDDQVESLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSST 149
++ L +D +H L L+ T +T+ +Y+ A +
Sbjct: 83 VLNLCLTEFENCYLEGND----IH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 150 VGNGDKTFEHAVLGCALDDQKRI 172
DK A+ + ++
Sbjct: 136 --PFDKKSNSALFRAVGEGNAQL 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 7e-04
Identities = 25/207 (12%), Positives = 63/207 (30%), Gaps = 49/207 (23%)
Query: 19 DVENDLSLKDHLLGQLDQVEAHVEELRKMASQLENEKDQI---LTTIHTLKNMDSLNDIG 75
+SL H + L E + L + L+ + + T + + L+ I
Sbjct: 284 ATTTHISLDHHSMT-LTPDEV--KSL--LLKYLDCRPQDLPREVLTTNPRR----LSIIA 334
Query: 76 DNDKDDILRY-------LDRISLRCTTIDVCVHTLRSDDQVESLHQVNCLIDNLIIGMRE 128
++ +D + + D+++ T I+ ++ L + + +++ + I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---- 387
Query: 129 TPEQT---------QTKCLSYVAACSSSSTVGNGDKTFEHAVLGCALDDQ---------- 169
P ++ + V S V K ++ L+ +
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 170 KRIRQRLNGLLDYMTKEKWKKAIQPMD 196
+ I N + + +D
Sbjct: 447 RSIVDHYNIPKTF---DSDDLIPPYLD 470
Score = 31.4 bits (70), Expect = 0.21
Identities = 29/222 (13%), Positives = 65/222 (29%), Gaps = 56/222 (25%)
Query: 2 EVEEAASSNDVHIEEPKDVENDLSL--KDHLLGQLDQVEAHVEELRKMASQLENEKD--- 56
E + + ++IE+ + ND + K ++ +LR+ +L K+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLI 155
Query: 57 --------QILTTIHTLKNMDSLN---------DIG-DNDKDDILRYLDRISLRCTTIDV 98
+ + + ++ N + +L L ++ ID
Sbjct: 156 DGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---LYQID- 210
Query: 99 CVHTLRSDDQVESLHQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTFE 158
T RSD +++ + L ++ P + CL + ++ F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAW----NAFN 263
Query: 159 HAVLGC-------------ALDDQKRIRQRLNGLLDYMTKEK 187
L C L L+ +T ++
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.9 bits (68), Expect = 0.53
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 59 LTTIHTLKNMDSLNDIGDNDKDDILRYLDRISLRCTTIDVCVH------TLRSDDQVESL 112
L N+ LN DK+D L + ++ H T D +
Sbjct: 80 LKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEE-FGDVEAIFHEGACSSTTEWDGKY--- 135
Query: 113 HQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTF 157
++DN +E + + ++ A SS++T G F
Sbjct: 136 -----MMDNNYQYSKELLHYCLEREIPFLYA-SSAATYGGRTSDF 174
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.4 bits (66), Expect = 0.97
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 2 EVEEAASSNDVHIEEPKDVENDLS-LKDHLLGQLDQVEAHVE-------ELRKMASQLEN 53
+EE S ++ E ++ +L+ LK+ + ++E ++ EL K+ +LE
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 54 EKDQILTTIHTLKNM 68
E + I L+
Sbjct: 1068 ESSDLHEQIAELQAQ 1082
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 27.9 bits (63), Expect = 1.9
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 59 LTTIHTLKNMDSLNDIGDNDKDDILRYLDRISLRCTTIDVCVH------TLRSDDQVESL 112
L N+ LN DK+D L + ++ H T D + +
Sbjct: 33 LKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEE-FGDVEAIFHEGACSSTTEWDGKY--M 89
Query: 113 HQVNCLIDNLIIGMRETPEQTQTKCLSYVAACSSSSTVGNGDKTF 157
N +E + + ++ A SS++T G F
Sbjct: 90 MDNN------YQYSKELLHYCLEREIPFLYA-SSAATYGGRTSDF 127
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A
{Escherichia coli} SCOP: a.8.7.1
Length = 213
Score = 27.8 bits (61), Expect = 2.0
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 36 QVEAHVEELRKMASQLENEKDQILTTIHTLKNMDSLNDIGD---NDKDDILRYL 86
++ E+L +MA QLE K Q+ T + ++M ++GD + + L
Sbjct: 9 ELIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTSTNTLANNL 62
>1q06_A Transcriptional regulator CUER; MERR family transcriptional
regulator, copper efflux regulator; 2.07A {Escherichia
coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Length = 135
Score = 26.9 bits (60), Expect = 2.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 26 LKDHLLGQLDQVEAHVEELRKMASQLENEKDQ 57
+K L ++ ++E H+EEL+ M QL +
Sbjct: 80 VKRRTLEKVAEIERHIEELQSMRDQLLALANA 111
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 27.0 bits (59), Expect = 4.6
Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 15 EEPKDVENDLSLKDHLLGQLDQVEAHVEELR-KMASQLENEKDQILTTI-----HTLKNM 68
E + ++D +E VE R + ++D + I L
Sbjct: 6 ENENEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQH 65
Query: 69 DSLNDIGDNDKDDILRYLDRISLRCTTIDVCVHTLRS 105
S + + +D+I + ++ ++ R
Sbjct: 66 VSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRD 102
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif,
four-helical bundle, viral protein; 1.30A
{Streptococcus agalactiae serogroup V} PDB: 3gvm_A
3o9o_A
Length = 98
Score = 25.7 bits (56), Expect = 5.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 42 EELRKMASQLENEKDQILTTIHTLKNM 68
EELR A + Q+ ++ L
Sbjct: 11 EELRSSAQKYTAGSQQVTEVLNLLTQE 37
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 26.6 bits (59), Expect = 7.4
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 15 EEPKDVENDLSLKDHLLGQL------DQVEAHVEELRKMASQLENEKD----QILTTIHT 64
E+ + +++S+ +LG+ + + VE +RK++ D ++LTT+
Sbjct: 3 EQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQN 62
Query: 65 LKNMDSL 71
L N + L
Sbjct: 63 LSNDELL 69
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 24.6 bits (54), Expect = 7.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 28 DHLLGQLDQVEAHVEELRKMASQLENE 54
+ L G+ ++E E L++ A L E
Sbjct: 26 EALTGECKELEKKNEALKERADSLAKE 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,837,182
Number of extensions: 155272
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 36
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)