RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7387
         (196 letters)



>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
          {Escherichia coli [TaxId: 562]}
          Length = 187

 Score = 27.6 bits (61), Expect = 0.71
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 36 QVEAHVEELRKMASQLENEKDQILTTIHTLKNMDSLNDIGD---NDKDDILRYL 86
          ++    E+L +MA QLE  K Q+ T  +  ++M    ++GD      + +   L
Sbjct: 2  ELIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTSTNTLANNL 55


>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase
          {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
          Length = 197

 Score = 26.0 bits (57), Expect = 2.4
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 36 QVEAHVEELRKMASQLENEKDQILTTIHTLKNMDSLNDIGDNDKDDILRYLDRI 89
          ++EA  E+ R M      +    L  I  ++ +     I  + + +I   LD+I
Sbjct: 22 EIEALKEQTRSMLLATGRKLADTLNLIDIIERL----GISYHFEKEIDEILDQI 71


>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 17/113 (15%)

Query: 44  LRKMASQLENEKDQILTTIHTLKNMDSLNDIGDNDKDDILRYLDRISLRCTTIDVCVHTL 103
           L K+   L+     I        N   L    +    D L  L R+ L            
Sbjct: 31  LYKIHDALKANAHAIEE-----ANKIDLAVAKETGLADSL--LKRLDLFKGD-------- 75

Query: 104 RSDDQVESLHQVNCLIDNL--IIGMRETPEQTQTKCLSYVAACSSSSTVGNGD 154
           + +  ++ +  V  L D +  +   RE  +      ++              +
Sbjct: 76  KFEVMLQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPE 128


>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic
          protein PsbU {Thermosynechococcus elongatus [TaxId:
          146786]}
          Length = 98

 Score = 23.7 bits (51), Expect = 8.3
 Identities = 3/56 (5%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 39 AHVEELRKMASQLENEKDQILTT--IHTLKNMDSLNDIGDNDKDDILRYLDRISLR 92
           ++    +           I+      +++++ ++  + +  K  +   L+  ++ 
Sbjct: 24 TNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVT 79


>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 427

 Score = 24.5 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 35  DQVEAHVEELRKMASQLENEKDQI 58
           D++ A   ELRK+ +++E   D I
Sbjct: 343 DRLFAMATELRKVGAEVEEGHDYI 366


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 685,965
Number of extensions: 29198
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 24
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)