BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7388
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 59 EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEI--TDVPVLSLYL-HKSRFDW 115
++D++ RL+E+P+ VL+LEAG + + + P+L+ L S FDW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 116 KYRTQPGTTACQAMKDKRCV-WTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
Y TT QA + R + + RG+++GGSS ++ M+ +RG+ DFD++AA G+EGW+
Sbjct: 62 NY-----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116
Query: 174 YEEVLPYFKKS------MDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRC 220
++ + + +K+ D N I H T G +++ + TPL R
Sbjct: 117 WDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRV 169
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 60 YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAG-GHETEITDV--PVLSLYLHKSRFDWK 116
+DF+ RL+ENPN VL++EAG G+ +I ++ P ++ L S++DW
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 117 YRTQPGTTACQAMKDKRCVW--TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSY 174
Y+T T + +R TRGK +GGSS LN +V G++ FDQW G + W++
Sbjct: 67 YKT----TMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 175 EEVLPYFKKSM----DQR--NPYLAKI 195
+ ++PY +KS D R +P L KI
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKI 149
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 10/115 (8%)
Query: 77 RLSENPNWKVLLLEAGGHETEITDV--PVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC 134
RLSE+P+ +VLL+EAG T+ D+ P L +DW YRT+ QA R
Sbjct: 35 RLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYRTE-----AQAGTAGRA 88
Query: 135 V-WTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGWSYEEVLPYFKKSMDQ 187
W RG++IGGSS L+ M Y+RG+ DF W A G+ W ++E+LP F+ D
Sbjct: 89 HHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH 143
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 59 EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLS--LYLHKSRFDWK 116
E+D+I RLSE+P V L+EAG + + +V L + L +S +DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
Y +P M+ R KV+GG S N+ + R D D+W A G GW+ E
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGF 218
P +K+ + N +H G + + + P P G
Sbjct: 128 AAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 59 EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLS--LYLHKSRFDWK 116
E+D+I RLSE+P V L+EAG + + +V L + L +S +DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
Y +P M+ R KV+GG S N+ + R D D+W A G GW+ E
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGF 218
P +K+ + N +H G + + + P P G
Sbjct: 128 AAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 59 EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLS--LYLHKSRFDWK 116
E+D+I RLSE+P V L+EAG + + +V L + L +S +DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
Y +P M+ R KV+GG S N + R D D+W A G GW+ E
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGF 218
P +K+ + N +H G + + + P P G
Sbjct: 128 AAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 44 YDPETQIFDQKKLLME--------YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHE 95
Y P QI Q LL + YD+I +L+ENP KVL++E G +E
Sbjct: 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 96 TE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTML 152
+ I + P + + D Y T P + ++ GK +GGS+++N
Sbjct: 61 SNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDS 114
Query: 153 YVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHA 200
+ R ++ D W G EGW+++ + Y KK+ R P A++ H+
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHS 163
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 61 DFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETE----ITDVPVLSLY--LHKSRFD 114
D+I RL+ENPN VL++E+G +E++ I D L+ Y + S D
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIED---LNAYGDIFGSSVD 77
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWS 173
Y T A ++ + G +GGS+++N + R ++ D W GNEGW+
Sbjct: 78 HAYE-----TVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYH 199
++ V Y ++ R P +I H
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGH 158
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 37 LYFRYDLYDPETQIFDQKKLLMEYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHET 96
L F YD D E L YD++ LSE +KVL+LE G T
Sbjct: 12 LSFAYDATDLE--------LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPT 61
Query: 97 EITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRG 156
+V ++ ++ + T + + + RG+V+GG+S++N +Y R
Sbjct: 62 AYPNVLTADGFV----YNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARA 117
Query: 157 NRRDFDQWAAD 167
N + D
Sbjct: 118 NTSIYSASGVD 128
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 37 LYFRYDLYDPETQIFDQKKLLMEYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHET 96
L F YD D E L YD++ LSE +KVL+LE G T
Sbjct: 12 LSFAYDATDLE--------LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPT 61
Query: 97 EITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRG 156
+V ++ ++ + T + + + RG+V+GG+S++N +Y R
Sbjct: 62 AYPNVLTADGFV----YNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARA 117
Query: 157 NRRDFDQWAAD 167
N + D
Sbjct: 118 NTSIYSASGVD 128
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 37 LYFRYDLYDPETQIFDQKKLLMEYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHET 96
L F YD D E L YD++ LSE +KVL+LE G T
Sbjct: 12 LSFAYDATDLE--------LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG---T 58
Query: 97 EITDVPVLSLYLHKSRFDWKYRTQP-GTTACQAMKDKRCVW-TRGKVIGGSSVLNTMLYV 154
T P L L F + + + G T + + RG+V+GG+S++N +Y
Sbjct: 59 LPTAYPNL---LTSDGFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYA 115
Query: 155 RGNRRDF 161
R N + F
Sbjct: 116 RANTKIF 122
>pdb|2VT2|A Chain A, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT2|B Chain B, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT3|A Chain A, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT3|B Chain B, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
Length = 215
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 158 RRDFDQWAADGNEGWSY--EEVLPYFKKSMDQ 187
RRDF + A G +G+ Y + +L +F+K++DQ
Sbjct: 51 RRDFSYFGALGKKGYGYNVDYLLSFFRKTLDQ 82
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 42/145 (28%)
Query: 60 YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEIT-----------------DVP 102
YD+I RLSE KVLLLE GG T+ T D+P
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 61
Query: 103 VL--SLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRD 160
L SL+ + F W C K G ++GG + +N LY N D
Sbjct: 62 GLFESLFTDSNPFWW----------C-----KDITVFAGCLVGGGTSVNGALYWYPNDGD 106
Query: 161 FDQWAADGNEGW--SYEEVLPYFKK 183
F + GW S+ PY K
Sbjct: 107 FSS-----SVGWPSSWTNHAPYTSK 126
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 42/145 (28%)
Query: 60 YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEIT-----------------DVP 102
YD+I RLSE KVLLLE GG T+ T D+P
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 66
Query: 103 VL--SLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRD 160
L SL+ + F W C K G ++GG + +N LY N D
Sbjct: 67 GLFESLFTDSNPFWW----------C-----KDITVFAGCLVGGGTSVNGALYWYPNDGD 111
Query: 161 FDQWAADGNEGW--SYEEVLPYFKK 183
F + GW S+ PY K
Sbjct: 112 FSS-----SVGWPSSWTNHAPYTSK 131
>pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Burkholderia Fungorum
Length = 432
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 97 EITDVPVLSLYL---HKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLY 153
E+T V +LSL L +++RF+ GT A +KD+ + T K G S T
Sbjct: 123 EVTGVRLLSLRLPASYRARFELPRHGVAGTRALTDVKDRPMIGTIIKPNVGLSAAETAAL 182
Query: 154 VR 155
VR
Sbjct: 183 VR 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,804,612
Number of Sequences: 62578
Number of extensions: 262751
Number of successful extensions: 456
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 16
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)