BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7388
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 114/161 (70%), Gaps = 3/161 (1%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
EYDFIV+GGGSAG+VVA+RLSE P WKVLL+EAGG E +P + L S D++Y
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123
Query: 119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL 178
T+P AC + ++RC W RGKV+GG+SVLN M+YVRGNR D+D WAADGN GW+Y +VL
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVL 183
Query: 179 PYFKKSMDQRNPYLAKI-DRYHATGGYLTVQDSPWNTPLGF 218
P+FKKS D N L ++ YHA GG L V P+N PL +
Sbjct: 184 PFFKKSED--NLDLDEVGTEYHAKGGLLPVGKFPYNPPLSY 222
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 113/161 (70%), Gaps = 3/161 (1%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
EYDFIV+GGGSAG+VVA+RLSE P WKVLL+EAGG E +P + L S D++Y
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123
Query: 119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL 178
T+P AC + ++RC W RGKV+GG+SV+N M+Y+RGNR D+D WAA GN GWSY++VL
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVL 183
Query: 179 PYFKKSMDQRNPYLAKI-DRYHATGGYLTVQDSPWNTPLGF 218
P+FKKS D N L + YHA GG L V P+N PL +
Sbjct: 184 PFFKKSED--NLELDAVGTEYHAKGGLLPVGKFPYNPPLSY 222
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+P VLLLEAGG + + T +P L+ L R++
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRVDFRTQMPAALAFPLQGRRYN 63
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T+P M ++R RGK +GGSS++N M Y+RGN DFD WA G E WS
Sbjct: 64 WAYETEPEPY----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWS 119
Query: 174 YEEVLPYFKKS 184
Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+P VLLLEAGG + + T +P L+ L R++
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T+P M ++R RGK +GGSS++N M Y+RGN DFD WA G E WS
Sbjct: 64 WAYETEPEPY----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWS 119
Query: 174 YEEVLPYFKKS 184
Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 120 bits (300), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 13/155 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M D+R RGK +GGSS++N M Y+RGN DFD WA G E W
Sbjct: 61 NWAYETDPEPH----MNDRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWATMSGLEDW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV 207
SY + LPYF+K+ + R+ + YH G ++V
Sbjct: 117 SYLDCLPYFRKA-ETRD---VGANDYHGASGPVSV 147
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+P VLLLEAGG + + T +P L+ L R++
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T+P M ++R RGK +GGSS++N M Y+RGN DFD WA G E W
Sbjct: 64 WAYETEPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWG 119
Query: 174 YEEVLPYFKKS 184
Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+P VLLLEAGG + + T +P L+ L R++
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T+P M ++R RGK +GGSS++N M Y+RGN DFD WA G E W
Sbjct: 64 WAYETEPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWG 119
Query: 174 YEEVLPYFKKS 184
Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+P VLLLEAGG + + T +P L+ L R++
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T+P M ++R RGK +GGSS++N M Y+RGN DFD WA G E W
Sbjct: 64 WAYETEPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWG 119
Query: 174 YEEVLPYFKKS 184
Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRMDFRTQMPAALAFPLQGRRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA A G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWAKAPGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 14/164 (8%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I+VG GSAGNV+A+RL+E+ + VLLLEAGG + T +P L+ L R++
Sbjct: 5 EYDYIIVGAGSAGNVLASRLTEDADVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYN 64
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWS 173
W Y T P M ++R RGK +GGSS++N M Y+RGN D+D WAA G E W+
Sbjct: 65 WAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWT 120
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
Y + LPYF+K+ + R+ A + YH G + V S P N PL
Sbjct: 121 YLDCLPYFRKA-ETRD---AGANAYHGGDGPVHVTTSKPGNNPL 160
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA+ G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPY----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV-QDSPWNTPL 216
SY + LPY++K+ + R+ + YH G ++V P N PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---IGPNDYHGGDGPVSVTTPKPGNNPL 157
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + + D YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD--MGEND-YHGGDGPVSVTTSKPGVNPL 157
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + + D YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD--MGEND-YHGGDGPVSVTTSKPGVNPL 157
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + + D YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD--MGEND-YHGGDGPVSVTTSKPGVNPL 157
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 99/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M +R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPY----MNHRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV-QDSPWNTPL 216
SY + LPY++K+ + R+ + YH G ++V P N PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---IGPNDYHGGDGPVSVTTPKPGNNPL 157
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 12/164 (7%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
SY + LPY++K+ + R+ + + D + G + P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD--VGENDYHGGDGPVSVITSKPGVNPL 157
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 12/164 (7%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + G E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
SY + LPY++K+ + R+ + + D + G + P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD--VGENDYHGGDGPVSVITSKPGVNPL 157
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
MEYD+I++G GSAGNV+A RL+E + VLLLEAGG + + T +P L+ L R+
Sbjct: 1 MEYDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA G E W
Sbjct: 61 NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLEDW 116
Query: 173 SYEEVLPYFKKS 184
SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
E+D+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R++
Sbjct: 4 EFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGWS 173
W Y T P M ++R RGK +GGSS++N M Y+RGN DFD WA A G E W+
Sbjct: 64 WAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWT 119
Query: 174 YEEVLPYFKKS 184
Y + LPYF+K+
Sbjct: 120 YHDCLPYFRKA 130
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
M++D+I++G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R+
Sbjct: 1 MQFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGN-EGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN D D WA + + E W
Sbjct: 61 NWAYETEPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPSLENW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
SY + LPY++K+ + R+ + YH G ++V S P PL
Sbjct: 117 SYLDCLPYYRKA-ETRD---VGENDYHGGDGPVSVTTSKPGVNPL 157
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 14/164 (8%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I+ G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R++
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T P M ++R RGK +GGSS++N M Y+RGN D+D WA G E W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHQGLENWT 120
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
Y + LPYFKK+ + R+ + YH G ++V S P PL
Sbjct: 121 YLDCLPYFKKA-ETRD---IGPNDYHGGDGPVSVTTSKPGVNPL 160
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 14/164 (8%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I+ G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R++
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T P M ++R RGK +GGSS++N M Y+RGN D+D W+ G E W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
Y + LPYFKK+ + R+ + YH G ++V S P PL
Sbjct: 121 YLDCLPYFKKA-ETRD---VGPNDYHGGNGPVSVTTSKPGANPL 160
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 98/164 (59%), Gaps = 14/164 (8%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVPVLSLY-LHKSRFD 114
EYD+I+VG GSAGNV+A+RL+E+ + VLLLEAGG + T +P Y L R++
Sbjct: 5 EYDYIIVGAGSAGNVLASRLAEDADVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWS 173
W Y T P M ++R RGK +GGSS++N M Y+RGN D+D WAA G E W+
Sbjct: 65 WAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWT 120
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
Y + LPYF+K+ + R+ + YH G + V S P N PL
Sbjct: 121 YLDCLPYFRKA-ETRD---IGANAYHGGDGPVHVTTSKPGNNPL 160
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 13/155 (8%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVPVLSLY-LHKSRF 113
M YD+I++G GSAGNV+A RL+E+P+ VLLLEAGG + T +P Y L R+
Sbjct: 1 MVYDYIIIGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
+W Y T+P M ++R RGK +GGSS++N M Y+RGN DFD+WA G E W
Sbjct: 61 NWAYETEPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDEWAKLPGLEDW 116
Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV 207
+Y LPYF+K+ + R+ + YH G ++V
Sbjct: 117 NYLNCLPYFRKA-ETRD---IGANDYHGDSGPVSV 147
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 14/164 (8%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I+ G GSAGNV+A RL+E+PN VLLLEAGG + T +P L+ L R++
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y T P M ++R RGK +GGSS++N M Y+RGN D+D W+ G E W+
Sbjct: 65 WAYETDPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLENWT 120
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
Y + LPYFKK+ + R+ + YH G ++V S P PL
Sbjct: 121 YLDCLPYFKKA-ETRD---VGPNDYHGGDGPVSVTTSKPGVNPL 160
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 12/163 (7%)
Query: 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET-EITDVP-VLSLYLHKSRFD 114
++E DF+++G GSAG+ +A RLSE+ V+++E GG + + +P LS+ L+ S +D
Sbjct: 1 MLEADFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYD 60
Query: 115 WKYRTQPGTTACQAMKDKRCVWT-RGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWS 173
W + ++P + R + T RGKVIGGSS +N M+YVRG+ RDFD WA +G GW
Sbjct: 61 WGFASEP-----EPHLGGRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWG 115
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
+ +VLPYFK+ D D + GG L VQ PL
Sbjct: 116 FADVLPYFKRMEDND----GGEDGWRGHGGPLHVQRGSRKNPL 154
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 6/131 (4%)
Query: 56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI-TDVPV-LSLYLHKSRF 113
+ YD+I+VG GSAG V+A+RLSE+ +VLLLEAGG + I +P LS ++ ++
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYPMNTEKY 60
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWS 173
W++ T A + + ++ RGKV+GGSS +N M+YVRG+ DFD+W A+G +GW+
Sbjct: 61 AWQFET----VAEEGLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWN 116
Query: 174 YEEVLPYFKKS 184
Y+ LPYF+K+
Sbjct: 117 YQACLPYFRKA 127
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R++
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 65
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y+T P M ++R RGK +GGSS++N M Y+RGN D+D WA+ G E W+
Sbjct: 66 WAYKTDPEPF----MNNRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWT 121
Query: 174 YEEVLPYFKKS 184
Y + LPYF+K+
Sbjct: 122 YLDCLPYFRKA 132
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 9/131 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
EYD+I++G GSAGNV+A RL+E+ + VLLLEAGG + + T +P L+ L R++
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYN 65
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
W Y+T P M ++R RGK +GGSS++N M Y+RGN D+D WA+ G E W+
Sbjct: 66 WAYKTDPEPF----MNNRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLEDWT 121
Query: 174 YEEVLPYFKKS 184
Y + LPYF+K+
Sbjct: 122 YLDCLPYFRKA 132
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 19/168 (11%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET---------EITDVPVLSLYLH 109
EY F+VVG GSAG V+A+RL+E+PN +VLLLEAG + +I L L
Sbjct: 42 EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLC 101
Query: 110 KSRFDWKYRTQPGTTACQAMKDKRCV-WTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADG 168
+++W Y T+P Q D R + W RG+V GGSS LN M+Y+RG+ D+++W +G
Sbjct: 102 DDKYNWYYHTEP-----QPGMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREG 156
Query: 169 NEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
EGW Y LPYF+K+ QR+ A + Y G L V N PL
Sbjct: 157 AEGWDYAHCLPYFRKA--QRHELGANM--YRGGDGPLHVSRGKTNHPL 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,466,341
Number of Sequences: 539616
Number of extensions: 3655020
Number of successful extensions: 9538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 9054
Number of HSP's gapped (non-prelim): 202
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)