Query psy7388
Match_columns 224
No_of_seqs 275 out of 1857
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:56:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 1.1E-45 2.4E-50 349.9 15.3 184 36-220 31-217 (623)
2 PRK02106 choline dehydrogenase 100.0 7.6E-33 1.6E-37 264.3 14.4 153 57-217 3-161 (560)
3 TIGR01810 betA choline dehydro 100.0 9.3E-33 2E-37 262.2 14.4 150 61-218 1-155 (532)
4 COG2303 BetA Choline dehydroge 100.0 3.7E-32 8.1E-37 259.2 12.5 160 57-221 5-167 (542)
5 PF00732 GMC_oxred_N: GMC oxid 100.0 2.1E-32 4.4E-37 240.1 9.6 150 60-217 1-153 (296)
6 PLN02785 Protein HOTHEAD 99.9 1.2E-24 2.5E-29 209.4 9.6 118 57-187 53-170 (587)
7 TIGR02462 pyranose_ox pyranose 99.5 4.3E-14 9.3E-19 135.1 8.2 122 60-188 1-161 (544)
8 COG0644 FixC Dehydrogenases (f 98.5 1.5E-07 3.3E-12 86.5 5.0 37 58-95 2-38 (396)
9 PRK10157 putative oxidoreducta 98.3 6.7E-07 1.5E-11 83.3 5.1 36 58-94 4-39 (428)
10 PRK10015 oxidoreductase; Provi 98.3 7.2E-07 1.6E-11 83.2 5.2 36 58-94 4-39 (429)
11 PF01946 Thi4: Thi4 family; PD 98.2 1.2E-06 2.5E-11 75.1 3.8 36 58-94 16-51 (230)
12 TIGR02032 GG-red-SF geranylger 98.2 2.3E-06 5E-11 73.8 4.7 34 60-94 1-34 (295)
13 PF01494 FAD_binding_3: FAD bi 98.1 2.9E-06 6.4E-11 74.6 5.0 37 59-96 1-37 (356)
14 TIGR02023 BchP-ChlP geranylger 98.1 2.5E-06 5.5E-11 78.0 4.4 32 60-92 1-32 (388)
15 TIGR00292 thiazole biosynthesi 98.1 3.3E-06 7.2E-11 73.8 4.8 36 58-94 20-55 (254)
16 PF03486 HI0933_like: HI0933-l 98.1 2.9E-06 6.2E-11 79.1 4.5 35 60-95 1-35 (409)
17 PLN00093 geranylgeranyl diphos 98.1 3.6E-06 7.8E-11 79.2 4.7 37 57-94 37-73 (450)
18 PRK08274 tricarballylate dehyd 98.1 4.5E-06 9.7E-11 78.2 5.0 35 58-93 3-37 (466)
19 PRK04176 ribulose-1,5-biphosph 98.1 5.2E-06 1.1E-10 72.6 4.9 36 58-94 24-59 (257)
20 PRK11259 solA N-methyltryptoph 98.0 5.9E-06 1.3E-10 74.5 4.9 36 58-94 2-37 (376)
21 PRK07364 2-octaprenyl-6-methox 98.0 8.3E-06 1.8E-10 74.7 5.9 38 57-95 16-53 (415)
22 PRK06116 glutathione reductase 98.0 5.8E-06 1.3E-10 77.2 5.0 34 58-92 3-36 (450)
23 PF13450 NAD_binding_8: NAD(P) 98.0 8.1E-06 1.8E-10 57.2 4.4 31 64-95 1-31 (68)
24 PTZ00363 rab-GDP dissociation 98.0 5.6E-06 1.2E-10 77.9 4.7 38 57-95 2-39 (443)
25 PRK08010 pyridine nucleotide-d 98.0 6.1E-06 1.3E-10 76.8 4.8 35 58-93 2-36 (441)
26 TIGR01421 gluta_reduc_1 glutat 98.0 5.8E-06 1.3E-10 77.5 4.6 34 58-92 1-34 (450)
27 PRK08020 ubiF 2-octaprenyl-3-m 98.0 6.6E-06 1.4E-10 74.8 4.8 35 58-93 4-38 (391)
28 PRK07608 ubiquinone biosynthes 98.0 7.3E-06 1.6E-10 74.3 5.0 37 58-95 4-40 (388)
29 COG1233 Phytoene dehydrogenase 98.0 6.2E-06 1.4E-10 78.2 4.5 35 58-93 2-36 (487)
30 PF01266 DAO: FAD dependent ox 98.0 7.6E-06 1.6E-10 72.0 4.8 32 61-93 1-32 (358)
31 PRK13369 glycerol-3-phosphate 98.0 7.1E-06 1.5E-10 77.9 4.9 36 57-93 4-39 (502)
32 COG1635 THI4 Ribulose 1,5-bisp 98.0 6.2E-06 1.3E-10 70.9 4.0 34 58-92 29-62 (262)
33 PRK12266 glpD glycerol-3-phosp 98.0 7.8E-06 1.7E-10 77.9 5.0 36 57-93 4-39 (508)
34 PRK07121 hypothetical protein; 98.0 1.1E-05 2.3E-10 76.4 5.9 37 57-94 18-54 (492)
35 COG0562 Glf UDP-galactopyranos 98.0 7.7E-06 1.7E-10 73.6 4.6 34 60-94 2-35 (374)
36 PRK09126 hypothetical protein; 98.0 8.7E-06 1.9E-10 74.0 4.8 35 59-94 3-37 (392)
37 PF00890 FAD_binding_2: FAD bi 98.0 8.5E-06 1.8E-10 74.9 4.7 33 61-94 1-33 (417)
38 PRK08773 2-octaprenyl-3-methyl 98.0 1E-05 2.2E-10 73.8 5.1 37 57-94 4-40 (392)
39 PRK06481 fumarate reductase fl 98.0 1.1E-05 2.3E-10 76.9 5.4 38 56-94 58-95 (506)
40 TIGR02028 ChlP geranylgeranyl 97.9 8E-06 1.7E-10 75.4 4.3 33 60-93 1-33 (398)
41 PRK05976 dihydrolipoamide dehy 97.9 9.5E-06 2.1E-10 76.3 4.9 35 58-93 3-37 (472)
42 PRK06370 mercuric reductase; V 97.9 1E-05 2.2E-10 75.9 5.0 36 57-93 3-38 (463)
43 TIGR01377 soxA_mon sarcosine o 97.9 9.4E-06 2E-10 73.3 4.7 34 60-94 1-34 (380)
44 COG2081 Predicted flavoprotein 97.9 1.1E-05 2.3E-10 74.5 4.7 36 58-94 2-37 (408)
45 PRK07251 pyridine nucleotide-d 97.9 1.1E-05 2.4E-10 75.0 4.9 35 58-93 2-36 (438)
46 TIGR01424 gluta_reduc_2 glutat 97.9 1.1E-05 2.3E-10 75.5 4.5 33 59-92 2-34 (446)
47 TIGR03364 HpnW_proposed FAD de 97.9 1.3E-05 2.7E-10 72.4 4.8 33 60-93 1-33 (365)
48 PRK05714 2-octaprenyl-3-methyl 97.9 1.2E-05 2.7E-10 73.6 4.8 34 59-93 2-35 (405)
49 PRK08013 oxidoreductase; Provi 97.9 1.3E-05 2.9E-10 73.5 5.0 35 59-94 3-37 (400)
50 PRK07494 2-octaprenyl-6-methox 97.9 1.4E-05 3E-10 72.7 5.0 36 58-94 6-41 (388)
51 PRK12409 D-amino acid dehydrog 97.9 1.2E-05 2.7E-10 73.7 4.6 33 60-93 2-34 (410)
52 PRK07333 2-octaprenyl-6-methox 97.9 1.4E-05 3E-10 72.9 4.9 35 60-94 2-37 (403)
53 PRK05192 tRNA uridine 5-carbox 97.9 1.3E-05 2.8E-10 78.1 4.7 35 58-93 3-37 (618)
54 PRK06416 dihydrolipoamide dehy 97.9 1.4E-05 3.1E-10 74.7 4.8 35 58-93 3-37 (462)
55 PF05834 Lycopene_cycl: Lycope 97.9 1.5E-05 3.2E-10 73.0 4.7 34 61-95 1-36 (374)
56 TIGR01790 carotene-cycl lycope 97.9 1.6E-05 3.4E-10 72.3 4.7 33 61-94 1-33 (388)
57 PRK05249 soluble pyridine nucl 97.9 1.6E-05 3.5E-10 74.3 4.9 35 58-93 4-38 (461)
58 PF12831 FAD_oxidored: FAD dep 97.9 1.4E-05 3.1E-10 74.5 4.4 34 61-95 1-34 (428)
59 TIGR01350 lipoamide_DH dihydro 97.9 1.6E-05 3.5E-10 74.2 4.8 32 59-91 1-32 (461)
60 PRK07045 putative monooxygenas 97.9 1.7E-05 3.7E-10 72.2 4.9 37 58-95 4-40 (388)
61 PRK06185 hypothetical protein; 97.9 1.7E-05 3.6E-10 72.6 4.8 36 58-94 5-40 (407)
62 PLN02463 lycopene beta cyclase 97.9 1.6E-05 3.4E-10 74.9 4.7 37 57-94 26-62 (447)
63 PRK11728 hydroxyglutarate oxid 97.9 1.6E-05 3.5E-10 72.7 4.6 36 59-94 2-38 (393)
64 TIGR01988 Ubi-OHases Ubiquinon 97.9 1.8E-05 3.9E-10 71.3 4.8 33 61-94 1-33 (385)
65 TIGR00031 UDP-GALP_mutase UDP- 97.8 1.8E-05 3.9E-10 73.0 4.8 33 60-93 2-34 (377)
66 TIGR01292 TRX_reduct thioredox 97.8 1.9E-05 4E-10 68.5 4.6 33 60-93 1-33 (300)
67 PRK06115 dihydrolipoamide dehy 97.8 1.7E-05 3.8E-10 74.6 4.7 32 59-91 3-34 (466)
68 TIGR02730 carot_isom carotene 97.8 1.8E-05 3.8E-10 74.9 4.7 34 60-94 1-34 (493)
69 KOG1298|consensus 97.8 1.8E-05 4E-10 72.8 4.4 38 57-95 43-80 (509)
70 PRK11101 glpA sn-glycerol-3-ph 97.8 2E-05 4.3E-10 75.8 4.9 35 58-93 5-39 (546)
71 TIGR03329 Phn_aa_oxid putative 97.8 2E-05 4.3E-10 74.0 4.8 36 58-93 23-59 (460)
72 PRK06467 dihydrolipoamide dehy 97.8 2.1E-05 4.6E-10 74.1 4.9 35 58-93 3-37 (471)
73 PRK06292 dihydrolipoamide dehy 97.8 2.2E-05 4.7E-10 73.4 4.9 34 58-92 2-35 (460)
74 PRK07818 dihydrolipoamide dehy 97.8 2.2E-05 4.8E-10 73.7 4.9 34 58-92 3-36 (466)
75 PRK13748 putative mercuric red 97.8 2.1E-05 4.6E-10 75.3 4.9 35 58-93 97-131 (561)
76 PLN02464 glycerol-3-phosphate 97.8 2.1E-05 4.5E-10 77.0 4.9 36 57-93 69-104 (627)
77 TIGR02053 MerA mercuric reduct 97.8 2.2E-05 4.7E-10 73.6 4.8 33 60-93 1-33 (463)
78 PRK12834 putative FAD-binding 97.8 2.3E-05 4.9E-10 75.4 5.0 35 58-93 3-37 (549)
79 PRK08849 2-octaprenyl-3-methyl 97.8 2.3E-05 4.9E-10 71.6 4.8 34 59-93 3-36 (384)
80 TIGR01373 soxB sarcosine oxida 97.8 2.4E-05 5.1E-10 71.8 4.9 37 57-93 28-65 (407)
81 TIGR01984 UbiH 2-polyprenyl-6- 97.8 2.5E-05 5.5E-10 70.6 5.0 35 61-95 1-35 (382)
82 PRK12837 3-ketosteroid-delta-1 97.8 2.2E-05 4.8E-10 74.9 4.7 35 58-94 6-40 (513)
83 PLN02661 Putative thiazole syn 97.8 2.4E-05 5.2E-10 71.6 4.5 37 58-94 91-127 (357)
84 PRK05732 2-octaprenyl-6-methox 97.8 2.6E-05 5.5E-10 70.8 4.6 34 58-92 2-38 (395)
85 PLN02985 squalene monooxygenas 97.8 3E-05 6.4E-10 74.2 5.2 37 57-94 41-77 (514)
86 PRK14694 putative mercuric red 97.8 2.6E-05 5.7E-10 73.3 4.8 35 58-93 5-39 (468)
87 TIGR03143 AhpF_homolog putativ 97.8 2.9E-05 6.2E-10 74.8 4.9 35 58-93 3-37 (555)
88 PLN02697 lycopene epsilon cycl 97.8 2.6E-05 5.7E-10 74.9 4.6 35 58-93 107-141 (529)
89 PTZ00058 glutathione reductase 97.8 2.8E-05 6.2E-10 75.2 4.8 35 57-92 46-80 (561)
90 PRK07804 L-aspartate oxidase; 97.8 3.4E-05 7.4E-10 74.1 5.3 37 57-94 14-50 (541)
91 TIGR01789 lycopene_cycl lycope 97.7 3E-05 6.6E-10 71.0 4.6 33 61-93 1-34 (370)
92 PRK06996 hypothetical protein; 97.7 3.4E-05 7.5E-10 70.8 5.0 37 57-93 9-48 (398)
93 PRK06327 dihydrolipoamide dehy 97.7 3.2E-05 6.9E-10 72.9 4.7 33 58-91 3-35 (475)
94 PRK08244 hypothetical protein; 97.7 3.6E-05 7.9E-10 72.6 5.0 36 59-95 2-37 (493)
95 PTZ00052 thioredoxin reductase 97.7 3.5E-05 7.5E-10 73.4 4.8 33 58-91 4-36 (499)
96 TIGR01989 COQ6 Ubiquinone bios 97.7 3.4E-05 7.3E-10 71.9 4.5 33 60-93 1-37 (437)
97 PRK05257 malate:quinone oxidor 97.7 3.5E-05 7.6E-10 73.4 4.6 37 58-94 4-41 (494)
98 KOG0029|consensus 97.7 3.6E-05 7.8E-10 73.5 4.5 37 57-94 13-49 (501)
99 PRK08850 2-octaprenyl-6-methox 97.7 4E-05 8.7E-10 70.3 4.7 33 59-92 4-36 (405)
100 PRK06617 2-octaprenyl-6-methox 97.7 4.2E-05 9E-10 69.7 4.6 33 60-93 2-34 (374)
101 PRK11445 putative oxidoreducta 97.7 4E-05 8.8E-10 69.3 4.5 32 60-93 2-33 (351)
102 PLN02507 glutathione reductase 97.7 4.1E-05 8.8E-10 72.9 4.6 33 58-91 24-56 (499)
103 TIGR01320 mal_quin_oxido malat 97.7 4.2E-05 9.1E-10 72.6 4.7 34 60-93 1-35 (483)
104 COG0654 UbiH 2-polyprenyl-6-me 97.7 4.2E-05 9.2E-10 70.1 4.5 33 59-92 2-34 (387)
105 COG0665 DadA Glycine/D-amino a 97.7 4.9E-05 1.1E-09 68.6 4.9 36 58-94 3-38 (387)
106 PRK07208 hypothetical protein; 97.7 5.1E-05 1.1E-09 71.1 5.0 36 58-94 3-38 (479)
107 PTZ00383 malate:quinone oxidor 97.7 4.9E-05 1.1E-09 72.6 4.9 36 58-93 44-80 (497)
108 PRK06184 hypothetical protein; 97.7 5.1E-05 1.1E-09 71.8 5.0 37 58-95 2-38 (502)
109 PRK12835 3-ketosteroid-delta-1 97.7 4.7E-05 1E-09 73.9 4.8 36 58-94 10-45 (584)
110 PRK06847 hypothetical protein; 97.7 5.5E-05 1.2E-09 68.2 4.9 36 58-94 3-38 (375)
111 PRK08243 4-hydroxybenzoate 3-m 97.7 5.1E-05 1.1E-09 69.5 4.7 35 59-94 2-36 (392)
112 PRK07190 hypothetical protein; 97.7 5.2E-05 1.1E-09 72.0 4.9 37 58-95 4-40 (487)
113 PRK12842 putative succinate de 97.7 5.2E-05 1.1E-09 73.3 4.9 36 58-94 8-43 (574)
114 COG1249 Lpd Pyruvate/2-oxoglut 97.7 5E-05 1.1E-09 71.7 4.6 35 58-93 3-37 (454)
115 TIGR01423 trypano_reduc trypan 97.7 4.6E-05 1E-09 72.4 4.4 35 58-92 2-36 (486)
116 PTZ00367 squalene epoxidase; P 97.6 5.3E-05 1.1E-09 73.4 4.8 35 58-93 32-66 (567)
117 TIGR02733 desat_CrtD C-3',4' d 97.6 5.6E-05 1.2E-09 71.3 4.8 34 60-94 2-35 (492)
118 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 5.3E-05 1.2E-09 69.6 4.5 35 59-94 2-36 (390)
119 PLN02546 glutathione reductase 97.6 5.5E-05 1.2E-09 73.1 4.5 33 58-91 78-110 (558)
120 PRK01747 mnmC bifunctional tRN 97.6 5.7E-05 1.2E-09 74.1 4.7 34 59-93 260-293 (662)
121 PRK06175 L-aspartate oxidase; 97.6 5.8E-05 1.3E-09 70.6 4.6 35 58-94 3-37 (433)
122 PRK08275 putative oxidoreducta 97.6 5.9E-05 1.3E-09 72.6 4.7 37 58-94 8-45 (554)
123 PLN02576 protoporphyrinogen ox 97.6 6.6E-05 1.4E-09 70.7 4.9 36 58-94 11-47 (496)
124 PRK06834 hypothetical protein; 97.6 6.4E-05 1.4E-09 71.4 4.8 36 58-94 2-37 (488)
125 TIGR01813 flavo_cyto_c flavocy 97.6 6.6E-05 1.4E-09 69.7 4.7 34 61-94 1-34 (439)
126 PTZ00139 Succinate dehydrogena 97.6 6.3E-05 1.4E-09 73.5 4.7 36 58-94 28-63 (617)
127 PRK12844 3-ketosteroid-delta-1 97.6 6.9E-05 1.5E-09 72.3 4.9 35 58-93 5-39 (557)
128 PRK05945 sdhA succinate dehydr 97.6 6.2E-05 1.3E-09 72.8 4.5 36 59-94 3-39 (575)
129 PRK00711 D-amino acid dehydrog 97.6 7.2E-05 1.6E-09 68.5 4.7 32 61-93 2-33 (416)
130 PRK06854 adenylylsulfate reduc 97.6 6.5E-05 1.4E-09 73.2 4.6 36 58-94 10-47 (608)
131 PRK07588 hypothetical protein; 97.6 7.1E-05 1.5E-09 68.2 4.6 33 61-94 2-34 (391)
132 PRK08958 sdhA succinate dehydr 97.6 7.1E-05 1.5E-09 72.7 4.8 36 58-94 6-41 (588)
133 PLN02268 probable polyamine ox 97.6 8.1E-05 1.8E-09 68.9 4.9 33 61-94 2-34 (435)
134 PRK09078 sdhA succinate dehydr 97.6 7.1E-05 1.5E-09 72.8 4.6 36 58-94 11-46 (598)
135 PRK06452 sdhA succinate dehydr 97.6 7.1E-05 1.5E-09 72.3 4.6 36 58-94 4-39 (566)
136 PTZ00153 lipoamide dehydrogena 97.6 7.6E-05 1.7E-09 73.5 4.7 34 58-92 115-148 (659)
137 PRK07057 sdhA succinate dehydr 97.6 7.8E-05 1.7E-09 72.4 4.7 35 58-93 11-45 (591)
138 PRK07803 sdhA succinate dehydr 97.6 7.4E-05 1.6E-09 73.1 4.5 36 58-94 7-42 (626)
139 PRK06183 mhpA 3-(3-hydroxyphen 97.6 9.2E-05 2E-09 70.8 5.1 37 58-95 9-45 (538)
140 PRK08163 salicylate hydroxylas 97.6 9.1E-05 2E-09 67.4 4.8 36 58-94 3-38 (396)
141 PRK06753 hypothetical protein; 97.6 8.6E-05 1.9E-09 67.0 4.6 34 61-95 2-35 (373)
142 PRK13339 malate:quinone oxidor 97.6 8.2E-05 1.8E-09 71.0 4.6 34 58-91 5-39 (497)
143 PRK05329 anaerobic glycerol-3- 97.5 0.0001 2.3E-09 69.0 4.8 34 59-93 2-35 (422)
144 TIGR00562 proto_IX_ox protopor 97.5 9.8E-05 2.1E-09 68.6 4.6 35 60-94 3-40 (462)
145 PRK08401 L-aspartate oxidase; 97.5 9.7E-05 2.1E-09 69.6 4.6 34 60-94 2-35 (466)
146 PRK07236 hypothetical protein; 97.5 0.00011 2.4E-09 67.1 4.8 36 58-94 5-40 (386)
147 PRK06126 hypothetical protein; 97.5 0.00011 2.4E-09 70.3 4.9 36 58-94 6-41 (545)
148 PRK07843 3-ketosteroid-delta-1 97.5 0.00011 2.3E-09 70.9 4.9 36 58-94 6-41 (557)
149 PLN00128 Succinate dehydrogena 97.5 9.9E-05 2.1E-09 72.4 4.6 36 58-94 49-84 (635)
150 PF13738 Pyr_redox_3: Pyridine 97.5 0.00011 2.4E-09 60.4 4.3 31 63-94 1-32 (203)
151 TIGR02734 crtI_fam phytoene de 97.5 8.3E-05 1.8E-09 70.2 3.9 32 62-94 1-32 (502)
152 PRK08132 FAD-dependent oxidore 97.5 0.00016 3.4E-09 69.3 5.7 37 57-94 21-57 (547)
153 PRK14727 putative mercuric red 97.5 0.00012 2.7E-09 69.1 4.9 34 58-92 15-48 (479)
154 PRK06069 sdhA succinate dehydr 97.5 0.00011 2.3E-09 71.2 4.5 37 58-94 4-42 (577)
155 COG0579 Predicted dehydrogenas 97.5 0.00013 2.7E-09 68.5 4.7 37 58-94 2-39 (429)
156 TIGR01812 sdhA_frdA_Gneg succi 97.5 0.00011 2.5E-09 70.7 4.5 33 61-94 1-33 (566)
157 PRK11883 protoporphyrinogen ox 97.5 0.00013 2.8E-09 67.3 4.7 34 61-94 2-36 (451)
158 PRK10262 thioredoxin reductase 97.5 0.00013 2.9E-09 64.8 4.6 34 58-92 5-38 (321)
159 PRK07573 sdhA succinate dehydr 97.5 0.00013 2.8E-09 71.6 4.8 35 58-93 34-68 (640)
160 PRK08626 fumarate reductase fl 97.5 0.00012 2.6E-09 72.1 4.5 36 58-94 4-39 (657)
161 TIGR01438 TGR thioredoxin and 97.5 0.00013 2.8E-09 69.2 4.6 32 59-91 2-33 (484)
162 COG0492 TrxB Thioredoxin reduc 97.5 0.00014 3.1E-09 65.3 4.6 35 58-93 2-37 (305)
163 PRK06263 sdhA succinate dehydr 97.5 0.00012 2.6E-09 70.3 4.4 35 58-94 6-40 (543)
164 PRK12845 3-ketosteroid-delta-1 97.5 0.00014 3E-09 70.5 4.7 35 57-93 14-48 (564)
165 PF07992 Pyr_redox_2: Pyridine 97.5 0.00017 3.7E-09 59.0 4.6 32 61-93 1-32 (201)
166 COG3573 Predicted oxidoreducta 97.4 0.00016 3.4E-09 66.0 4.7 38 58-96 4-41 (552)
167 PRK08641 sdhA succinate dehydr 97.4 0.00014 2.9E-09 70.8 4.6 34 59-93 3-36 (589)
168 PRK07395 L-aspartate oxidase; 97.4 0.00014 3E-09 70.3 4.5 36 57-94 7-42 (553)
169 PRK08205 sdhA succinate dehydr 97.4 0.00014 3E-09 70.6 4.6 35 58-94 4-38 (583)
170 PRK09231 fumarate reductase fl 97.4 0.00014 3E-09 70.7 4.4 37 58-94 3-40 (582)
171 PRK07233 hypothetical protein; 97.4 0.00017 3.6E-09 66.0 4.7 34 61-95 1-34 (434)
172 PRK12839 hypothetical protein; 97.4 0.00017 3.7E-09 69.9 4.9 35 58-93 7-41 (572)
173 PRK07538 hypothetical protein; 97.4 0.00018 3.8E-09 66.4 4.6 33 61-94 2-34 (413)
174 PLN02815 L-aspartate oxidase 97.4 0.00018 3.9E-09 70.1 4.7 35 58-94 28-62 (594)
175 PRK08294 phenol 2-monooxygenas 97.4 0.00022 4.9E-09 69.9 5.3 38 56-94 29-67 (634)
176 TIGR00551 nadB L-aspartate oxi 97.4 0.0002 4.2E-09 67.9 4.7 34 59-94 2-35 (488)
177 TIGR01176 fum_red_Fp fumarate 97.4 0.00017 3.7E-09 70.0 4.3 37 58-94 2-39 (580)
178 PRK09077 L-aspartate oxidase; 97.4 0.0002 4.2E-09 68.8 4.5 35 58-94 7-41 (536)
179 PLN02172 flavin-containing mon 97.3 0.00028 6.2E-09 66.7 5.1 36 58-94 9-44 (461)
180 PRK12843 putative FAD-binding 97.3 0.00032 7E-09 67.9 5.6 36 57-93 14-49 (578)
181 PRK08071 L-aspartate oxidase; 97.3 0.00023 4.9E-09 68.0 4.4 34 59-94 3-36 (510)
182 PLN02568 polyamine oxidase 97.3 0.00031 6.7E-09 67.7 5.2 37 58-94 4-44 (539)
183 PLN02676 polyamine oxidase 97.3 0.00028 6.1E-09 67.1 4.9 37 58-94 25-61 (487)
184 PRK06134 putative FAD-binding 97.3 0.00029 6.3E-09 68.3 5.0 36 57-93 10-45 (581)
185 PRK13800 putative oxidoreducta 97.3 0.00028 6E-09 71.8 4.6 36 58-94 12-47 (897)
186 COG1231 Monoamine oxidase [Ami 97.3 0.00035 7.5E-09 65.5 4.9 36 58-94 6-41 (450)
187 PRK15317 alkyl hydroperoxide r 97.3 0.00032 7E-09 66.9 4.8 34 57-91 209-242 (517)
188 PRK12416 protoporphyrinogen ox 97.3 0.0003 6.4E-09 65.7 4.4 34 61-94 3-41 (463)
189 PRK05868 hypothetical protein; 97.2 0.00035 7.7E-09 63.8 4.6 33 61-94 3-35 (372)
190 TIGR02061 aprA adenosine phosp 97.2 0.00034 7.4E-09 68.4 4.7 33 61-94 1-37 (614)
191 PTZ00306 NADH-dependent fumara 97.2 0.00034 7.3E-09 73.0 4.9 36 58-94 408-443 (1167)
192 KOG2415|consensus 97.2 0.00033 7.1E-09 65.4 4.2 38 57-94 74-116 (621)
193 PRK07846 mycothione reductase; 97.2 0.00037 8E-09 65.5 4.6 32 59-93 1-32 (451)
194 COG0578 GlpA Glycerol-3-phosph 97.2 0.00037 8E-09 66.9 4.6 37 58-95 11-47 (532)
195 PRK05335 tRNA (uracil-5-)-meth 97.2 0.0004 8.7E-09 65.2 4.6 34 60-94 3-36 (436)
196 TIGR03140 AhpF alkyl hydropero 97.2 0.0004 8.8E-09 66.3 4.6 33 58-91 211-243 (515)
197 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00043 9.4E-09 64.8 4.5 34 60-94 1-34 (419)
198 TIGR03452 mycothione_red mycot 97.2 0.00045 9.8E-09 64.8 4.7 32 59-93 2-33 (452)
199 COG3380 Predicted NAD/FAD-depe 97.2 0.00049 1.1E-08 61.0 4.5 33 60-93 2-34 (331)
200 KOG3855|consensus 97.1 0.00045 9.8E-09 64.2 4.1 36 58-93 35-73 (481)
201 TIGR02731 phytoene_desat phyto 97.1 0.00053 1.1E-08 63.9 4.7 33 61-94 1-33 (453)
202 COG1053 SdhA Succinate dehydro 97.1 0.00051 1.1E-08 66.6 4.5 37 58-95 5-41 (562)
203 PRK06912 acoL dihydrolipoamide 97.1 0.00055 1.2E-08 64.2 4.6 32 61-93 2-33 (458)
204 COG2072 TrkA Predicted flavopr 97.1 0.00061 1.3E-08 64.1 4.9 36 57-93 6-42 (443)
205 TIGR01372 soxA sarcosine oxida 97.1 0.00069 1.5E-08 69.6 5.5 36 58-94 162-197 (985)
206 PF01134 GIDA: Glucose inhibit 97.1 0.00052 1.1E-08 63.7 4.1 28 61-89 1-28 (392)
207 TIGR03219 salicylate_mono sali 97.1 0.00069 1.5E-08 62.4 4.8 34 61-94 2-35 (414)
208 PRK07512 L-aspartate oxidase; 97.1 0.00059 1.3E-08 65.2 4.3 34 58-94 8-41 (513)
209 TIGR00136 gidA glucose-inhibit 97.0 0.00065 1.4E-08 66.3 4.5 33 60-93 1-33 (617)
210 PRK06475 salicylate hydroxylas 97.0 0.0008 1.7E-08 61.7 4.7 34 60-94 3-36 (400)
211 PLN02927 antheraxanthin epoxid 97.0 0.00084 1.8E-08 66.3 4.9 36 57-93 79-114 (668)
212 TIGR00275 flavoprotein, HI0933 97.0 0.00053 1.2E-08 63.4 3.0 31 63-94 1-31 (400)
213 KOG0685|consensus 96.9 0.001 2.2E-08 62.7 4.5 38 58-95 20-57 (498)
214 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0011 2.5E-08 62.2 4.6 33 61-94 2-34 (433)
215 KOG2665|consensus 96.9 0.00076 1.6E-08 61.1 3.2 38 57-94 46-84 (453)
216 TIGR03315 Se_ygfK putative sel 96.9 0.0012 2.6E-08 67.9 4.9 35 58-93 536-570 (1012)
217 PRK12831 putative oxidoreducta 96.9 0.0013 2.8E-08 62.2 4.8 35 58-93 139-173 (464)
218 PF00996 GDI: GDP dissociation 96.8 0.0015 3.2E-08 61.6 4.9 39 57-96 2-40 (438)
219 PRK12810 gltD glutamate syntha 96.8 0.0015 3.3E-08 61.6 4.9 36 58-94 142-177 (471)
220 KOG2820|consensus 96.8 0.0011 2.5E-08 60.2 3.7 37 57-94 5-41 (399)
221 PF00070 Pyr_redox: Pyridine n 96.8 0.0028 6.1E-08 45.1 5.0 34 62-96 2-35 (80)
222 TIGR01316 gltA glutamate synth 96.8 0.0017 3.6E-08 61.0 4.8 35 58-93 132-166 (449)
223 TIGR01811 sdhA_Bsu succinate d 96.7 0.0013 2.8E-08 64.2 3.9 31 62-93 1-31 (603)
224 PF04820 Trp_halogenase: Trypt 96.7 0.0013 2.9E-08 62.0 3.7 35 61-95 1-37 (454)
225 PLN02612 phytoene desaturase 96.7 0.0023 4.9E-08 62.0 5.1 35 58-93 92-126 (567)
226 PRK07845 flavoprotein disulfid 96.7 0.0021 4.5E-08 60.6 4.7 32 61-93 3-34 (466)
227 COG3349 Uncharacterized conser 96.7 0.0018 4E-08 61.4 4.3 32 62-94 3-34 (485)
228 PRK11749 dihydropyrimidine deh 96.7 0.0024 5.3E-08 59.9 4.9 36 58-94 139-174 (457)
229 KOG0405|consensus 96.7 0.002 4.3E-08 59.1 4.1 35 57-92 18-52 (478)
230 COG3075 GlpB Anaerobic glycero 96.6 0.0024 5.1E-08 58.2 4.4 35 59-94 2-36 (421)
231 TIGR02732 zeta_caro_desat caro 96.6 0.0025 5.4E-08 60.4 4.6 33 61-94 1-33 (474)
232 PLN02529 lysine-specific histo 96.6 0.0025 5.4E-08 63.6 4.8 36 58-94 159-194 (738)
233 KOG2614|consensus 96.6 0.0025 5.5E-08 59.2 4.5 34 59-93 2-35 (420)
234 PF06039 Mqo: Malate:quinone o 96.6 0.0029 6.3E-08 59.8 4.6 37 58-94 2-39 (488)
235 PLN02328 lysine-specific histo 96.5 0.0029 6.4E-08 63.7 4.6 36 58-94 237-272 (808)
236 PRK12769 putative oxidoreducta 96.5 0.0036 7.8E-08 61.5 4.9 36 58-94 326-361 (654)
237 KOG1399|consensus 96.5 0.003 6.4E-08 59.7 4.1 36 59-95 6-41 (448)
238 PRK12778 putative bifunctional 96.5 0.0035 7.7E-08 62.6 4.9 35 58-93 430-464 (752)
239 PRK12775 putative trifunctiona 96.4 0.0034 7.3E-08 64.8 4.7 36 58-94 429-464 (1006)
240 KOG4716|consensus 96.4 0.003 6.6E-08 57.8 3.6 35 58-93 18-52 (503)
241 COG1232 HemY Protoporphyrinoge 96.4 0.0044 9.6E-08 58.5 4.6 33 62-94 3-36 (444)
242 TIGR02485 CobZ_N-term precorri 96.4 0.0026 5.6E-08 59.1 3.1 30 64-94 1-30 (432)
243 PRK08255 salicylyl-CoA 5-hydro 96.3 0.0041 8.8E-08 62.3 4.4 34 61-94 2-36 (765)
244 PRK09853 putative selenate red 96.3 0.0045 9.8E-08 63.7 4.8 35 58-93 538-572 (1019)
245 PRK12779 putative bifunctional 96.3 0.0049 1.1E-07 63.2 4.7 35 58-93 305-339 (944)
246 PRK12770 putative glutamate sy 96.2 0.0067 1.5E-07 54.9 5.0 37 58-95 17-53 (352)
247 KOG2960|consensus 96.2 0.0015 3.2E-08 56.4 0.5 35 58-92 75-110 (328)
248 PRK12814 putative NADPH-depend 96.2 0.0061 1.3E-07 60.0 4.9 36 58-94 192-227 (652)
249 PLN02487 zeta-carotene desatur 96.2 0.0061 1.3E-07 59.2 4.8 35 59-94 75-109 (569)
250 COG0445 GidA Flavin-dependent 96.1 0.0058 1.2E-07 58.8 3.7 36 58-94 3-38 (621)
251 PLN03000 amine oxidase 96.0 0.0083 1.8E-07 60.9 4.8 36 58-94 183-218 (881)
252 PLN02852 ferredoxin-NADP+ redu 96.0 0.01 2.2E-07 56.7 5.2 38 58-95 25-63 (491)
253 PRK13977 myosin-cross-reactive 96.0 0.0087 1.9E-07 58.2 4.7 36 59-94 22-60 (576)
254 TIGR01318 gltD_gamma_fam gluta 96.0 0.0099 2.1E-07 56.2 4.9 36 58-94 140-175 (467)
255 PF00743 FMO-like: Flavin-bind 95.9 0.0095 2.1E-07 57.4 4.7 33 61-94 3-35 (531)
256 TIGR01317 GOGAT_sm_gam glutama 95.9 0.01 2.2E-07 56.3 4.8 35 59-94 143-177 (485)
257 PLN02976 amine oxidase 95.9 0.0096 2.1E-07 63.2 4.8 35 58-93 692-726 (1713)
258 COG1148 HdrA Heterodisulfide r 95.9 0.01 2.2E-07 56.5 4.5 35 59-94 124-158 (622)
259 KOG1335|consensus 95.8 0.01 2.2E-07 55.2 3.8 33 58-91 38-70 (506)
260 KOG0042|consensus 95.7 0.0046 1E-07 59.4 1.5 38 57-95 65-102 (680)
261 PRK12809 putative oxidoreducta 95.7 0.013 2.8E-07 57.6 4.6 36 58-94 309-344 (639)
262 PRK09564 coenzyme A disulfide 95.7 0.013 2.8E-07 54.4 4.4 34 61-94 2-36 (444)
263 COG0029 NadB Aspartate oxidase 95.7 0.011 2.4E-07 56.3 3.9 33 61-95 9-41 (518)
264 TIGR03169 Nterm_to_SelD pyridi 95.5 0.02 4.2E-07 51.7 4.9 35 61-95 1-37 (364)
265 PRK09754 phenylpropionate diox 95.5 0.018 3.9E-07 52.9 4.8 37 59-95 3-40 (396)
266 KOG4254|consensus 95.5 0.012 2.6E-07 55.6 3.4 37 57-94 12-48 (561)
267 PRK13984 putative oxidoreducta 95.4 0.02 4.4E-07 55.6 4.9 36 58-94 282-317 (604)
268 PRK13512 coenzyme A disulfide 95.4 0.021 4.5E-07 53.4 4.7 35 61-95 3-38 (438)
269 PRK06567 putative bifunctional 95.4 0.016 3.6E-07 59.4 4.3 34 58-92 382-415 (1028)
270 PF13434 K_oxygenase: L-lysine 95.4 0.011 2.4E-07 53.8 2.8 36 59-94 2-37 (341)
271 PTZ00188 adrenodoxin reductase 95.3 0.023 4.9E-07 54.5 4.7 37 59-95 39-75 (506)
272 COG2509 Uncharacterized FAD-de 95.3 0.021 4.5E-07 53.9 4.1 41 56-96 15-59 (486)
273 PRK12771 putative glutamate sy 95.3 0.023 5.1E-07 54.8 4.7 35 58-93 136-170 (564)
274 PTZ00318 NADH dehydrogenase-li 95.2 0.028 6E-07 52.3 4.8 37 58-95 9-45 (424)
275 KOG2853|consensus 95.2 0.021 4.5E-07 52.5 3.7 41 55-95 82-125 (509)
276 PRK09897 hypothetical protein; 95.1 0.027 5.9E-07 54.4 4.6 34 60-93 2-36 (534)
277 PRK04965 NADH:flavorubredoxin 94.9 0.042 9.1E-07 50.0 5.1 35 60-94 3-38 (377)
278 KOG2311|consensus 94.4 0.037 8E-07 52.8 3.5 34 57-91 26-59 (679)
279 KOG3851|consensus 94.4 0.037 8E-07 50.5 3.3 38 57-94 37-75 (446)
280 PF13454 NAD_binding_9: FAD-NA 94.3 0.054 1.2E-06 43.5 3.7 31 63-93 1-35 (156)
281 COG1252 Ndh NADH dehydrogenase 93.9 0.072 1.6E-06 49.8 4.2 37 59-95 155-203 (405)
282 COG0569 TrkA K+ transport syst 93.8 0.083 1.8E-06 45.3 4.2 33 61-94 2-34 (225)
283 PF02558 ApbA: Ketopantoate re 93.6 0.1 2.2E-06 41.0 4.2 31 62-93 1-31 (151)
284 KOG1276|consensus 93.6 0.1 2.2E-06 49.1 4.7 37 58-94 10-47 (491)
285 COG0446 HcaD Uncharacterized N 93.5 0.1 2.3E-06 46.8 4.5 35 60-95 137-171 (415)
286 KOG4405|consensus 93.4 0.084 1.8E-06 49.5 3.7 39 56-95 5-43 (547)
287 KOG1439|consensus 93.3 0.051 1.1E-06 50.6 2.2 38 57-95 2-39 (440)
288 COG3634 AhpF Alkyl hydroperoxi 93.2 0.05 1.1E-06 50.2 1.9 35 57-91 209-243 (520)
289 COG1252 Ndh NADH dehydrogenase 93.0 0.12 2.7E-06 48.2 4.3 37 60-96 4-41 (405)
290 KOG1800|consensus 92.8 0.16 3.5E-06 47.3 4.6 38 59-96 20-58 (468)
291 KOG2755|consensus 92.5 0.1 2.2E-06 46.4 2.8 34 61-94 1-35 (334)
292 COG1206 Gid NAD(FAD)-utilizing 92.4 0.12 2.6E-06 47.4 3.2 34 60-94 4-37 (439)
293 PRK09754 phenylpropionate diox 92.4 0.19 4.1E-06 46.1 4.7 35 60-95 145-179 (396)
294 COG0493 GltD NADPH-dependent g 92.4 0.14 2.9E-06 48.7 3.7 35 59-94 123-157 (457)
295 COG5044 MRS6 RAB proteins gera 92.3 0.2 4.4E-06 46.3 4.6 37 58-95 5-41 (434)
296 COG2907 Predicted NAD/FAD-bind 92.2 0.13 2.9E-06 47.3 3.3 34 59-94 8-41 (447)
297 PRK05976 dihydrolipoamide dehy 92.0 0.21 4.6E-06 46.9 4.6 34 60-94 181-214 (472)
298 PF01210 NAD_Gly3P_dh_N: NAD-d 92.0 0.23 5E-06 39.9 4.1 31 62-93 2-32 (157)
299 TIGR01350 lipoamide_DH dihydro 91.8 0.23 5E-06 46.3 4.6 34 60-94 171-204 (461)
300 PRK04965 NADH:flavorubredoxin 91.8 0.26 5.6E-06 44.8 4.7 34 60-94 142-175 (377)
301 PRK06912 acoL dihydrolipoamide 91.6 0.27 5.8E-06 46.1 4.8 34 61-95 172-205 (458)
302 PRK07251 pyridine nucleotide-d 91.6 0.27 5.8E-06 45.7 4.7 34 61-95 159-192 (438)
303 KOG2844|consensus 91.5 0.22 4.8E-06 49.3 4.1 37 56-93 36-73 (856)
304 KOG2404|consensus 91.5 0.2 4.3E-06 45.9 3.5 32 61-93 11-42 (477)
305 PF02254 TrkA_N: TrkA-N domain 91.2 0.4 8.6E-06 35.9 4.5 32 62-94 1-32 (116)
306 PRK06467 dihydrolipoamide dehy 91.0 0.32 6.9E-06 45.9 4.6 34 61-95 176-209 (471)
307 KOG2495|consensus 91.0 0.11 2.4E-06 48.9 1.4 37 58-94 217-266 (491)
308 PRK05708 2-dehydropantoate 2-r 90.9 0.32 6.9E-06 43.4 4.3 32 61-93 4-35 (305)
309 PF13738 Pyr_redox_3: Pyridine 90.9 0.4 8.6E-06 39.1 4.6 34 59-93 167-200 (203)
310 TIGR01421 gluta_reduc_1 glutat 90.9 0.34 7.3E-06 45.5 4.6 33 61-94 168-200 (450)
311 PRK14989 nitrite reductase sub 90.8 0.36 7.7E-06 49.3 5.0 35 61-95 5-42 (847)
312 PRK07846 mycothione reductase; 90.8 0.36 7.8E-06 45.3 4.7 35 60-95 167-201 (451)
313 TIGR02053 MerA mercuric reduct 90.7 0.35 7.7E-06 45.3 4.6 34 60-94 167-200 (463)
314 TIGR02374 nitri_red_nirB nitri 90.5 0.34 7.4E-06 48.9 4.6 34 62-95 1-36 (785)
315 PF02737 3HCDH_N: 3-hydroxyacy 90.3 0.45 9.7E-06 39.3 4.4 32 62-94 2-33 (180)
316 COG4529 Uncharacterized protei 90.3 0.35 7.6E-06 46.0 4.1 35 60-94 2-38 (474)
317 PRK06249 2-dehydropantoate 2-r 90.2 0.44 9.6E-06 42.5 4.6 32 61-93 7-38 (313)
318 PRK06115 dihydrolipoamide dehy 90.1 0.46 9.9E-06 44.8 4.8 35 60-95 175-209 (466)
319 PRK06416 dihydrolipoamide dehy 90.0 0.46 9.9E-06 44.4 4.7 34 61-95 174-207 (462)
320 TIGR03385 CoA_CoA_reduc CoA-di 89.9 0.47 1E-05 43.9 4.6 34 60-94 138-171 (427)
321 PRK05249 soluble pyridine nucl 89.9 0.47 1E-05 44.3 4.7 34 60-94 176-209 (461)
322 PRK13512 coenzyme A disulfide 89.8 0.45 9.7E-06 44.4 4.5 33 61-94 150-182 (438)
323 PRK06370 mercuric reductase; V 89.8 0.47 1E-05 44.5 4.6 35 60-95 172-206 (463)
324 PRK07818 dihydrolipoamide dehy 89.8 0.47 1E-05 44.6 4.6 33 61-94 174-206 (466)
325 COG3486 IucD Lysine/ornithine 89.7 0.46 9.9E-06 44.5 4.3 39 57-95 3-41 (436)
326 PRK06522 2-dehydropantoate 2-r 89.6 0.52 1.1E-05 41.2 4.4 29 62-91 3-31 (304)
327 PRK12921 2-dehydropantoate 2-r 89.3 0.51 1.1E-05 41.4 4.2 29 62-91 3-31 (305)
328 COG1249 Lpd Pyruvate/2-oxoglut 89.2 0.64 1.4E-05 44.2 5.0 35 61-96 175-209 (454)
329 PRK06292 dihydrolipoamide dehy 89.2 0.57 1.2E-05 43.7 4.7 34 60-94 170-203 (460)
330 TIGR01424 gluta_reduc_2 glutat 88.8 0.62 1.3E-05 43.5 4.6 33 61-94 168-200 (446)
331 TIGR03452 mycothione_red mycot 88.5 0.66 1.4E-05 43.6 4.6 34 60-94 170-203 (452)
332 PRK06327 dihydrolipoamide dehy 88.2 0.73 1.6E-05 43.5 4.7 34 61-95 185-218 (475)
333 PRK09564 coenzyme A disulfide 88.2 0.72 1.6E-05 42.7 4.6 34 60-94 150-183 (444)
334 PRK06116 glutathione reductase 88.1 0.76 1.6E-05 42.9 4.7 34 60-94 168-201 (450)
335 TIGR03140 AhpF alkyl hydropero 88.0 0.7 1.5E-05 44.2 4.5 33 61-94 354-386 (515)
336 TIGR01292 TRX_reduct thioredox 87.8 0.77 1.7E-05 39.5 4.3 34 60-94 142-175 (300)
337 PRK06129 3-hydroxyacyl-CoA deh 87.8 0.72 1.6E-05 41.1 4.2 32 61-93 4-35 (308)
338 PRK07845 flavoprotein disulfid 87.8 0.82 1.8E-05 43.1 4.8 33 61-94 179-211 (466)
339 PTZ00318 NADH dehydrogenase-li 87.6 0.81 1.7E-05 42.5 4.6 34 61-94 175-221 (424)
340 TIGR03143 AhpF_homolog putativ 87.5 0.78 1.7E-05 44.4 4.5 33 61-94 145-177 (555)
341 PTZ00153 lipoamide dehydrogena 87.4 0.83 1.8E-05 45.4 4.7 33 61-94 314-346 (659)
342 PLN02507 glutathione reductase 87.4 0.84 1.8E-05 43.6 4.6 33 61-94 205-237 (499)
343 PRK13748 putative mercuric red 87.3 0.84 1.8E-05 43.8 4.6 32 61-93 272-303 (561)
344 COG1748 LYS9 Saccharopine dehy 87.3 0.86 1.9E-05 42.5 4.5 33 61-93 3-35 (389)
345 PRK15317 alkyl hydroperoxide r 87.1 0.85 1.8E-05 43.6 4.5 34 61-95 353-386 (517)
346 PRK14620 NAD(P)H-dependent gly 87.0 0.91 2E-05 40.5 4.4 30 62-92 3-32 (326)
347 PRK08010 pyridine nucleotide-d 86.9 1 2.2E-05 41.9 4.8 34 61-95 160-193 (441)
348 PRK10262 thioredoxin reductase 86.9 0.96 2.1E-05 40.1 4.5 33 61-94 148-180 (321)
349 PF01593 Amino_oxidase: Flavin 86.7 0.72 1.6E-05 40.9 3.6 26 69-95 1-26 (450)
350 PRK08293 3-hydroxybutyryl-CoA 86.6 1 2.2E-05 39.6 4.5 32 61-93 5-36 (287)
351 PLN02546 glutathione reductase 86.2 1 2.2E-05 43.8 4.6 34 60-94 253-286 (558)
352 PRK14694 putative mercuric red 86.2 1.1 2.4E-05 42.1 4.7 32 61-93 180-211 (468)
353 PRK09260 3-hydroxybutyryl-CoA 86.2 1 2.3E-05 39.5 4.3 31 62-93 4-34 (288)
354 TIGR02374 nitri_red_nirB nitri 85.9 1 2.3E-05 45.4 4.6 33 61-94 142-174 (785)
355 PRK01438 murD UDP-N-acetylmura 85.7 1.2 2.6E-05 41.9 4.7 33 60-93 17-49 (480)
356 PRK14727 putative mercuric red 85.5 1.2 2.6E-05 42.1 4.6 32 61-93 190-221 (479)
357 PF00899 ThiF: ThiF family; I 85.5 1.3 2.7E-05 34.5 4.0 36 60-95 3-38 (135)
358 PTZ00058 glutathione reductase 85.5 1.1 2.4E-05 43.6 4.4 34 60-94 238-271 (561)
359 PRK06719 precorrin-2 dehydroge 85.4 1.4 3E-05 35.7 4.3 30 59-89 13-42 (157)
360 PRK08229 2-dehydropantoate 2-r 85.3 1.2 2.6E-05 39.8 4.3 32 61-93 4-35 (341)
361 PRK14106 murD UDP-N-acetylmura 84.9 1.3 2.8E-05 41.2 4.4 33 60-93 6-38 (450)
362 cd01483 E1_enzyme_family Super 84.7 1.7 3.6E-05 34.0 4.4 33 62-94 2-34 (143)
363 TIGR01423 trypano_reduc trypan 84.6 1.4 3E-05 42.1 4.5 33 61-94 189-224 (486)
364 PRK14989 nitrite reductase sub 84.5 1.3 2.8E-05 45.2 4.6 33 61-94 147-179 (847)
365 PRK14618 NAD(P)H-dependent gly 84.5 1.4 3.1E-05 39.4 4.4 32 61-93 6-37 (328)
366 PRK07530 3-hydroxybutyryl-CoA 84.4 1.5 3.2E-05 38.6 4.4 32 61-93 6-37 (292)
367 PRK06718 precorrin-2 dehydroge 84.3 1.5 3.4E-05 36.8 4.3 32 59-91 10-41 (202)
368 PRK07819 3-hydroxybutyryl-CoA 84.0 1.6 3.4E-05 38.7 4.4 33 61-94 7-39 (286)
369 PRK12770 putative glutamate sy 84.0 1.6 3.5E-05 39.3 4.6 33 61-93 174-206 (352)
370 PF03721 UDPG_MGDP_dh_N: UDP-g 83.8 1.4 3.1E-05 36.6 3.8 32 62-94 3-34 (185)
371 PF01488 Shikimate_DH: Shikima 83.8 2.3 4.9E-05 33.3 4.8 35 58-92 11-45 (135)
372 COG1893 ApbA Ketopantoate redu 83.6 1.5 3.3E-05 39.4 4.2 32 62-94 3-34 (307)
373 KOG0404|consensus 83.6 1.2 2.6E-05 39.0 3.3 32 60-92 9-40 (322)
374 PRK06035 3-hydroxyacyl-CoA deh 83.4 1.7 3.8E-05 38.2 4.4 31 62-93 6-36 (291)
375 PRK07066 3-hydroxybutyryl-CoA 83.4 1.7 3.7E-05 39.4 4.4 31 62-93 10-40 (321)
376 cd05191 NAD_bind_amino_acid_DH 83.0 2.6 5.6E-05 30.2 4.5 33 59-91 23-55 (86)
377 PF13241 NAD_binding_7: Putati 83.0 1.6 3.4E-05 32.6 3.4 33 59-92 7-39 (103)
378 PRK12475 thiamine/molybdopteri 82.8 1.9 4.1E-05 39.3 4.5 36 58-93 23-58 (338)
379 PRK00094 gpsA NAD(P)H-dependen 82.7 2 4.3E-05 38.0 4.5 32 61-93 3-34 (325)
380 PTZ00052 thioredoxin reductase 82.7 1.7 3.6E-05 41.5 4.3 31 61-92 184-214 (499)
381 cd05311 NAD_bind_2_malic_enz N 82.2 2.1 4.5E-05 36.7 4.3 34 60-93 26-61 (226)
382 cd01075 NAD_bind_Leu_Phe_Val_D 82.2 2.2 4.8E-05 35.8 4.4 33 60-93 29-61 (200)
383 COG2072 TrkA Predicted flavopr 82.1 1.7 3.7E-05 40.9 4.0 36 60-96 176-211 (443)
384 TIGR01316 gltA glutamate synth 82.0 2 4.4E-05 40.3 4.5 33 61-94 274-306 (449)
385 PRK05808 3-hydroxybutyryl-CoA 82.0 2 4.4E-05 37.5 4.2 32 61-93 5-36 (282)
386 TIGR01438 TGR thioredoxin and 81.9 1.8 3.9E-05 41.2 4.2 31 61-92 182-212 (484)
387 PRK06130 3-hydroxybutyryl-CoA 81.9 2.2 4.7E-05 37.8 4.5 32 61-93 6-37 (311)
388 PF01118 Semialdhyde_dh: Semia 81.4 2.6 5.6E-05 32.1 4.2 33 62-94 2-35 (121)
389 PRK04148 hypothetical protein; 81.3 1.6 3.4E-05 34.8 3.0 33 60-94 18-50 (134)
390 PRK02705 murD UDP-N-acetylmura 81.0 2.3 4.9E-05 39.7 4.5 32 62-94 3-34 (459)
391 PRK07688 thiamine/molybdopteri 80.3 2.8 6.1E-05 38.2 4.7 36 58-93 23-58 (339)
392 cd01487 E1_ThiF_like E1_ThiF_l 80.3 3.2 7E-05 34.0 4.6 33 62-94 2-34 (174)
393 KOG0399|consensus 80.0 2.2 4.7E-05 45.1 4.1 36 58-94 1784-1819(2142)
394 TIGR02354 thiF_fam2 thiamine b 80.0 2.9 6.4E-05 35.1 4.4 36 58-93 20-55 (200)
395 PLN02545 3-hydroxybutyryl-CoA 79.9 2.8 6E-05 36.9 4.4 31 62-93 7-37 (295)
396 PRK09496 trkA potassium transp 79.9 2.5 5.5E-05 39.1 4.4 32 61-93 2-33 (453)
397 PRK14619 NAD(P)H-dependent gly 79.4 2.8 6E-05 37.3 4.3 32 61-93 6-37 (308)
398 PRK10669 putative cation:proto 79.4 2.6 5.6E-05 40.7 4.4 35 59-94 417-451 (558)
399 PRK11749 dihydropyrimidine deh 79.3 3 6.4E-05 39.1 4.6 35 60-94 274-308 (457)
400 TIGR02356 adenyl_thiF thiazole 78.8 3.2 7E-05 34.8 4.3 38 57-94 19-56 (202)
401 PLN02172 flavin-containing mon 78.8 2.2 4.8E-05 40.4 3.6 33 61-94 206-238 (461)
402 PRK15116 sulfur acceptor prote 78.6 3.3 7.1E-05 36.7 4.4 37 58-94 29-65 (268)
403 PRK09496 trkA potassium transp 78.1 3.3 7.1E-05 38.4 4.5 34 60-94 232-265 (453)
404 TIGR01763 MalateDH_bact malate 78.1 3.5 7.5E-05 36.9 4.5 30 62-91 4-33 (305)
405 cd00757 ThiF_MoeB_HesA_family 78.0 3.6 7.7E-05 35.1 4.4 36 58-93 20-55 (228)
406 TIGR01470 cysG_Nterm siroheme 77.6 3.6 7.9E-05 34.7 4.3 31 60-91 10-40 (205)
407 TIGR01915 npdG NADPH-dependent 77.2 3.9 8.6E-05 34.4 4.4 31 62-93 3-34 (219)
408 PRK08328 hypothetical protein; 76.9 4 8.7E-05 35.0 4.4 36 58-93 26-61 (231)
409 cd05291 HicDH_like L-2-hydroxy 76.5 4.2 9.2E-05 36.2 4.6 32 62-93 3-35 (306)
410 PRK12831 putative oxidoreducta 76.3 3.8 8.3E-05 38.7 4.5 33 61-94 283-315 (464)
411 TIGR02279 PaaC-3OHAcCoADH 3-hy 76.3 3.7 8E-05 39.5 4.4 31 62-93 8-38 (503)
412 TIGR02355 moeB molybdopterin s 76.3 4.3 9.3E-05 35.1 4.4 37 58-94 23-59 (240)
413 PRK08644 thiamine biosynthesis 76.2 4.4 9.6E-05 34.3 4.4 36 58-93 27-62 (212)
414 cd01080 NAD_bind_m-THF_DH_Cycl 75.9 5.1 0.00011 32.9 4.6 34 58-92 43-77 (168)
415 PRK12549 shikimate 5-dehydroge 75.9 4.3 9.3E-05 36.0 4.4 34 60-93 128-161 (284)
416 TIGR00518 alaDH alanine dehydr 75.7 4.2 9E-05 37.5 4.4 34 59-93 167-200 (370)
417 TIGR03026 NDP-sugDHase nucleot 75.5 3.8 8.2E-05 38.0 4.2 31 62-93 3-33 (411)
418 PLN02353 probable UDP-glucose 75.3 4.3 9.3E-05 38.8 4.5 33 61-93 3-36 (473)
419 PRK06223 malate dehydrogenase; 74.5 5 0.00011 35.5 4.5 32 61-92 4-35 (307)
420 PRK08017 oxidoreductase; Provi 74.4 5.2 0.00011 33.5 4.5 31 62-93 5-36 (256)
421 TIGR02853 spore_dpaA dipicolin 74.3 4.8 0.0001 35.8 4.3 33 60-93 152-184 (287)
422 COG0281 SfcA Malic enzyme [Ene 74.2 7.2 0.00016 36.8 5.6 38 57-94 197-236 (432)
423 PF03435 Saccharop_dh: Sacchar 74.1 4.7 0.0001 36.8 4.4 33 62-94 1-34 (386)
424 PRK05690 molybdopterin biosynt 73.9 5.4 0.00012 34.6 4.5 38 57-94 30-67 (245)
425 COG0451 WcaG Nucleoside-diphos 73.7 5.6 0.00012 34.2 4.6 32 62-94 3-35 (314)
426 PRK11730 fadB multifunctional 73.4 4.4 9.6E-05 40.6 4.3 33 61-94 315-347 (715)
427 PRK07326 short chain dehydroge 73.3 5.4 0.00012 33.0 4.2 32 61-93 8-40 (237)
428 TIGR01381 E1_like_apg7 E1-like 73.3 4.9 0.00011 40.0 4.4 37 58-94 337-373 (664)
429 PRK07531 bifunctional 3-hydrox 73.2 5 0.00011 38.4 4.4 31 62-93 7-37 (495)
430 cd01486 Apg7 Apg7 is an E1-lik 73.1 5.6 0.00012 36.0 4.4 33 62-94 2-34 (307)
431 PRK11064 wecC UDP-N-acetyl-D-m 73.1 4.9 0.00011 37.5 4.3 31 62-93 6-36 (415)
432 PTZ00082 L-lactate dehydrogena 73.0 5.7 0.00012 35.9 4.5 35 60-94 7-41 (321)
433 PF08659 KR: KR domain; Inter 72.9 6.9 0.00015 31.8 4.7 32 62-93 3-35 (181)
434 PRK08268 3-hydroxy-acyl-CoA de 72.9 5.1 0.00011 38.5 4.4 31 62-93 10-40 (507)
435 PRK02472 murD UDP-N-acetylmura 72.8 5.1 0.00011 37.2 4.3 31 62-93 8-38 (447)
436 KOG2403|consensus 72.8 3.4 7.4E-05 40.3 3.2 32 58-90 54-85 (642)
437 TIGR02437 FadB fatty oxidation 72.7 4.7 0.0001 40.4 4.3 32 61-93 315-346 (714)
438 PF13460 NAD_binding_10: NADH( 72.7 6.5 0.00014 31.3 4.4 32 62-94 1-33 (183)
439 cd01339 LDH-like_MDH L-lactate 72.7 4.8 0.0001 35.7 4.0 32 62-94 1-33 (300)
440 PRK08762 molybdopterin biosynt 72.5 5.8 0.00013 36.5 4.6 36 58-93 134-169 (376)
441 cd01484 E1-2_like Ubiquitin ac 72.3 6.1 0.00013 34.2 4.4 33 62-94 2-34 (234)
442 PRK12548 shikimate 5-dehydroge 72.1 6.3 0.00014 34.9 4.6 33 61-93 128-160 (289)
443 cd01492 Aos1_SUMO Ubiquitin ac 72.1 6.6 0.00014 32.8 4.5 37 58-94 20-56 (197)
444 PRK08177 short chain dehydroge 71.9 7.3 0.00016 32.2 4.7 32 62-94 4-36 (225)
445 PF06100 Strep_67kDa_ant: Stre 71.6 5.3 0.00011 38.4 4.1 34 60-93 3-39 (500)
446 PRK03562 glutathione-regulated 71.3 5.1 0.00011 39.5 4.1 35 59-94 400-434 (621)
447 PRK07417 arogenate dehydrogena 71.3 5.7 0.00012 34.7 4.1 31 62-93 3-33 (279)
448 cd01485 E1-1_like Ubiquitin ac 71.1 7.2 0.00016 32.6 4.5 37 58-94 18-54 (198)
449 PRK12778 putative bifunctional 71.1 6 0.00013 39.7 4.6 34 61-94 572-605 (752)
450 KOG2018|consensus 71.1 5 0.00011 36.7 3.6 33 61-93 76-108 (430)
451 KOG3923|consensus 71.0 6.5 0.00014 35.7 4.3 37 59-95 3-45 (342)
452 PF03446 NAD_binding_2: NAD bi 71.0 6.2 0.00013 31.6 3.9 31 62-93 4-34 (163)
453 PRK12814 putative NADPH-depend 71.0 6.1 0.00013 39.1 4.6 35 60-94 324-358 (652)
454 cd01065 NAD_bind_Shikimate_DH 70.8 7.9 0.00017 30.1 4.4 34 60-93 20-53 (155)
455 cd05292 LDH_2 A subgroup of L- 70.7 7.1 0.00015 34.9 4.6 33 61-93 2-35 (308)
456 TIGR03736 PRTRC_ThiF PRTRC sys 70.1 6.8 0.00015 34.2 4.2 37 57-93 9-55 (244)
457 COG0446 HcaD Uncharacterized N 70.1 7 0.00015 34.9 4.5 34 62-95 1-35 (415)
458 PF01262 AlaDh_PNT_C: Alanine 70.0 8.1 0.00018 31.2 4.4 34 59-93 20-53 (168)
459 PRK00066 ldh L-lactate dehydro 69.9 7.2 0.00016 35.1 4.5 34 59-92 6-40 (315)
460 cd00401 AdoHcyase S-adenosyl-L 69.7 7.1 0.00015 36.7 4.5 35 59-94 202-236 (413)
461 TIGR01317 GOGAT_sm_gam glutama 69.2 7.4 0.00016 37.0 4.6 34 61-94 285-318 (485)
462 PRK06057 short chain dehydroge 69.2 7.9 0.00017 32.6 4.4 32 61-93 9-41 (255)
463 PF03807 F420_oxidored: NADP o 69.2 9.8 0.00021 27.2 4.3 32 62-93 2-36 (96)
464 PLN02520 bifunctional 3-dehydr 69.1 6.7 0.00015 37.9 4.3 31 61-92 381-411 (529)
465 PF00056 Ldh_1_N: lactate/mala 69.0 9.8 0.00021 30.0 4.6 33 62-94 3-37 (141)
466 cd01078 NAD_bind_H4MPT_DH NADP 68.8 8.4 0.00018 31.6 4.4 32 60-92 29-61 (194)
467 TIGR01809 Shik-DH-AROM shikima 68.5 8.1 0.00018 34.1 4.4 33 60-92 126-158 (282)
468 PRK12439 NAD(P)H-dependent gly 68.5 6.7 0.00015 35.5 4.0 28 60-89 8-35 (341)
469 TIGR00507 aroE shikimate 5-deh 68.4 8.1 0.00017 33.7 4.4 33 60-93 118-150 (270)
470 cd05213 NAD_bind_Glutamyl_tRNA 68.3 7.7 0.00017 34.7 4.3 35 59-93 178-212 (311)
471 PRK07523 gluconate 5-dehydroge 68.0 8.6 0.00019 32.3 4.4 32 61-93 12-44 (255)
472 TIGR02441 fa_ox_alpha_mit fatt 67.9 6.6 0.00014 39.6 4.1 33 61-94 337-369 (737)
473 TIGR01505 tartro_sem_red 2-hyd 67.9 6.8 0.00015 34.3 3.8 31 62-93 2-32 (291)
474 PRK07774 short chain dehydroge 67.9 9 0.00019 31.9 4.4 33 60-93 7-40 (250)
475 cd01488 Uba3_RUB Ubiquitin act 67.3 8.5 0.00018 34.5 4.3 32 62-93 2-33 (291)
476 PF13434 K_oxygenase: L-lysine 67.2 7.1 0.00015 35.5 3.9 41 56-96 187-228 (341)
477 PRK05600 thiamine biosynthesis 67.2 8.4 0.00018 35.6 4.4 36 58-93 40-75 (370)
478 KOG2852|consensus 66.9 2.8 6.1E-05 38.0 1.2 34 59-92 10-48 (380)
479 PRK07067 sorbitol dehydrogenas 66.9 8.9 0.00019 32.3 4.3 32 61-93 8-40 (257)
480 PRK06841 short chain dehydroge 66.8 9.5 0.00021 32.0 4.4 32 61-93 17-49 (255)
481 cd00755 YgdL_like Family of ac 66.4 9.4 0.0002 32.9 4.3 36 58-93 10-45 (231)
482 PRK08217 fabG 3-ketoacyl-(acyl 66.4 10 0.00022 31.5 4.4 32 61-93 7-39 (253)
483 PRK10538 malonic semialdehyde 66.1 10 0.00022 31.9 4.4 31 62-93 3-34 (248)
484 PRK12828 short chain dehydroge 66.1 9.5 0.00021 31.3 4.2 31 62-93 10-41 (239)
485 PF00106 adh_short: short chai 65.9 12 0.00025 29.1 4.5 31 62-92 3-34 (167)
486 PRK07831 short chain dehydroge 65.9 9.3 0.0002 32.3 4.2 34 59-93 17-52 (262)
487 PRK07231 fabG 3-ketoacyl-(acyl 65.8 10 0.00022 31.5 4.4 32 61-93 7-39 (251)
488 PRK07060 short chain dehydroge 65.8 10 0.00022 31.4 4.3 32 61-93 11-43 (245)
489 PRK12429 3-hydroxybutyrate deh 65.6 10 0.00022 31.6 4.4 31 62-93 7-38 (258)
490 cd01489 Uba2_SUMO Ubiquitin ac 65.4 8.7 0.00019 34.7 4.1 33 62-94 2-34 (312)
491 TIGR01318 gltD_gamma_fam gluta 65.3 9.8 0.00021 36.0 4.6 35 60-94 283-317 (467)
492 PF03949 Malic_M: Malic enzyme 65.2 7.2 0.00016 34.3 3.4 37 58-94 24-70 (255)
493 cd05312 NAD_bind_1_malic_enz N 65.2 14 0.0003 33.0 5.2 36 59-94 25-70 (279)
494 PRK14027 quinate/shikimate deh 65.2 10 0.00023 33.6 4.5 32 61-92 129-160 (283)
495 PRK03659 glutathione-regulated 65.0 8.9 0.00019 37.6 4.3 35 59-94 400-434 (601)
496 TIGR00936 ahcY adenosylhomocys 64.8 11 0.00023 35.5 4.6 35 59-94 195-229 (406)
497 TIGR01832 kduD 2-deoxy-D-gluco 64.7 11 0.00023 31.5 4.3 31 61-92 7-38 (248)
498 PRK00258 aroE shikimate 5-dehy 64.6 11 0.00024 33.1 4.5 34 60-93 124-157 (278)
499 PRK05597 molybdopterin biosynt 64.4 11 0.00023 34.6 4.5 36 58-93 27-62 (355)
500 PRK11154 fadJ multifunctional 64.3 8.7 0.00019 38.5 4.2 32 61-93 311-343 (708)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1.1e-45 Score=349.87 Aligned_cols=184 Identities=54% Similarity=0.964 Sum_probs=162.0
Q ss_pred HHHhccc-CCCCCccccch--hhcCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchhhhhccCCC
Q psy7388 36 LLYFRYD-LYDPETQIFDQ--KKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSR 112 (224)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~--~~~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~~~~~~~~~ 112 (224)
+..+++. ..++.+++.+. .+...+|||||||||+|||++|+||||++++||||||||+.++...++|.+..+++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~ 110 (623)
T KOG1238|consen 31 LILYRRPELVDPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSL 110 (623)
T ss_pred HHhhhcccccCcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhcccc
Confidence 3334443 33555554433 23567899999999999999999999999999999999999877788997777888999
Q ss_pred CCCccccCCCccccccccCCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcCCCCC
Q psy7388 113 FDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYL 192 (224)
Q Consensus 113 ~~w~~~t~p~~~~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~~p~~ 192 (224)
+||.|.++|++.+|+.+.+++|.|+|||+|||||++|+|+|.|++++|||+|++.||+||+|++++|||+|+|+...|..
T Consensus 111 ~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~ 190 (623)
T KOG1238|consen 111 YDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDP 190 (623)
T ss_pred ccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCCCCCCCCcceEEeeCCCCChhhhhc
Q psy7388 193 AKIDRYHATGGYLTVQDSPWNTPLGFRC 220 (224)
Q Consensus 193 ~~~~~~hg~~Gpl~v~~~~~~~~~~~~~ 220 (224)
..++ |||..||+.|+...+.+++..+.
T Consensus 191 ~~~~-y~~~~g~~~ve~~~~~~~~~~~~ 217 (623)
T KOG1238|consen 191 ELTP-YHGAGGPLLVEAGVYPNNLFTAF 217 (623)
T ss_pred ccCc-ccccCCcceeccccccCchhhHh
Confidence 5544 99999999999999998877654
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=7.6e-33 Score=264.32 Aligned_cols=153 Identities=48% Similarity=0.876 Sum_probs=123.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC---Ccccccchhhhh-ccCCCCCCccccCCCccccccccCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE---TEITDVPVLSLY-LHKSRFDWKYRTQPGTTACQAMKDK 132 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~ 132 (224)
.++|||||||||++|+++|.||||+++++|||||+|+.. ....+.|..... .....++|.|.+.||+. ..++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence 357999999999999999999999666999999999753 122334443222 22356789999988863 4566
Q ss_pred ceeeccceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeC-
Q psy7388 133 RCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS- 210 (224)
Q Consensus 133 ~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~- 210 (224)
.+.+++||+|||||+||+|+|.|+++.|||.|+.. |+++|+|++|+|||+|+|++..+ ..++||..||++++.+
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~----~~~~~g~~gp~~~~~~~ 154 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG----EDDYRGGDGPLSVTRGK 154 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC----CccccCCCCCEEEeCCC
Confidence 78999999999999999999999999999999986 88999999999999999997632 1347999999999876
Q ss_pred CCCChhh
Q psy7388 211 PWNTPLG 217 (224)
Q Consensus 211 ~~~~~~~ 217 (224)
.+.+++.
T Consensus 155 ~~~~~~~ 161 (560)
T PRK02106 155 PGTNPLF 161 (560)
T ss_pred CCCCHHH
Confidence 4444433
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=9.3e-33 Score=262.15 Aligned_cols=150 Identities=41% Similarity=0.789 Sum_probs=124.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC---cccccchhhhh-ccCCCCCCccccCCCccccccccCCceee
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET---EITDVPVLSLY-LHKSRFDWKYRTQPGTTACQAMKDKRCVW 136 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~~~~~ 136 (224)
||||||||+||+++|.||||+++.||||||+|+... .....|..... ...+.++|.|.+.||+. +.++.+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999999878999999998532 22334432222 22445789999988874 45778999
Q ss_pred ccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeCCCCCh
Q psy7388 137 TRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTP 215 (224)
Q Consensus 137 ~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~~~~~~ 215 (224)
++||+|||||+||+|+|.|+++.|||.|+. .|+++|+|++|+|||+|+|+...+. .++||++||+.|..++...+
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~~~ 152 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPADNP 152 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCCCH
Confidence 999999999999999999999999999998 7899999999999999999876432 25899999999998777666
Q ss_pred hhh
Q psy7388 216 LGF 218 (224)
Q Consensus 216 ~~~ 218 (224)
..+
T Consensus 153 ~~~ 155 (532)
T TIGR01810 153 LFQ 155 (532)
T ss_pred HHH
Confidence 443
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.97 E-value=3.7e-32 Score=259.17 Aligned_cols=160 Identities=42% Similarity=0.829 Sum_probs=130.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc-ccccchhhhhccCC-CCCCccccCCCccccccccCCce
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE-ITDVPVLSLYLHKS-RFDWKYRTQPGTTACQAMKDKRC 134 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~t~p~~~~~~~~~~~~~ 134 (224)
..+|||||||+|.+||++|+||+ +++.+|||||+|+.... ...+|.....+... .++|.|.++++. .+.++.+
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~~ 79 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGREL 79 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCccc
Confidence 46899999999999999999999 55699999999986443 33445433333333 789999999987 4678889
Q ss_pred eeccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeCCCC
Q psy7388 135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWN 213 (224)
Q Consensus 135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~~~~ 213 (224)
.|+|||+|||||+||+|+|+|+++.||+.|.. .|+++|+|+||+|||+|+|++...........||..||+.++.+...
T Consensus 80 ~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~ 159 (542)
T COG2303 80 AWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSP 159 (542)
T ss_pred cccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCc
Confidence 99999999999999999999999999999987 57899999999999999999654321110347999999999988666
Q ss_pred Chhhhhcc
Q psy7388 214 TPLGFRCG 221 (224)
Q Consensus 214 ~~~~~~~~ 221 (224)
+|+.+++.
T Consensus 160 ~~~~~a~~ 167 (542)
T COG2303 160 NPIARAFI 167 (542)
T ss_pred hHHHHHHH
Confidence 67776653
No 5
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.97 E-value=2.1e-32 Score=240.15 Aligned_cols=150 Identities=39% Similarity=0.746 Sum_probs=113.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchh-hhhccCCCCCCccccCCCccccccccCCceeecc
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVL-SLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTR 138 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~-~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~r 138 (224)
|||||||||++|+++|.||||+++.+|||||+|+........+.. ........++|.+.+.++. ..+++.+.+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence 899999999999999999999988899999999976543322211 1112345678888777665 35677788999
Q ss_pred ceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEE-eeCCCCChh
Q psy7388 139 GKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV-QDSPWNTPL 216 (224)
Q Consensus 139 g~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v-~~~~~~~~~ 216 (224)
|++|||||+||+|+++|+++.||+.|+.. |.++|+|++++|||+|+|+...+. .+.||.+|++++ ..+....|.
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~~~~ 152 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYPSPM 152 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCHCTH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCCCHH
Confidence 99999999999999999999999999984 788899999999999999987764 458999999999 444444444
Q ss_pred h
Q psy7388 217 G 217 (224)
Q Consensus 217 ~ 217 (224)
.
T Consensus 153 ~ 153 (296)
T PF00732_consen 153 N 153 (296)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>PLN02785 Protein HOTHEAD
Probab=99.91 E-value=1.2e-24 Score=209.44 Aligned_cols=118 Identities=31% Similarity=0.481 Sum_probs=95.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchhhhhccCCCCCCccccCCCccccccccCCceee
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVW 136 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~ 136 (224)
..+|||||||+|+|||++|.||+| +.+|||||+|+.+.....+.... .+....++|.|.+.+|.. ..++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccccc----cCCCceec
Confidence 457999999999999999999999 38999999998532212222211 122345789999888852 35677899
Q ss_pred ccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhc
Q psy7388 137 TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQ 187 (224)
Q Consensus 137 ~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~ 187 (224)
+|||+|||||+||+|+|.|+++.||+. .+|+|++++|||++.|+.
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~ 170 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQ 170 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcc
Confidence 999999999999999999999999963 689999999999999974
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.50 E-value=4.3e-14 Score=135.13 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=78.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcc-------c------ccchhhh----hccC------------
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI-------T------DVPVLSL----YLHK------------ 110 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~-------~------~~p~~~~----~~~~------------ 110 (224)
||+||||+|++|+++|..|++++ .+|||||+|...... . +...+.. .++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g-~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG-LKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC-CeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 79999999999999999999987 999999999754310 0 0000000 0000
Q ss_pred -CCCCCccccCCCccccc-cc-----cCCce-eeccceEecCCccccceeeecCChhhhHHHhhCCCCCC--ChhchHHH
Q psy7388 111 -SRFDWKYRTQPGTTACQ-AM-----KDKRC-VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGW--SYEEVLPY 180 (224)
Q Consensus 111 -~~~~w~~~t~p~~~~~~-~~-----~~~~~-~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gW--sy~~l~py 180 (224)
....|+-. |...... +. ....+ ...|-|+|||+|++|++.+.|.++++- ...+ .+| +|+||+||
T Consensus 80 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r---~g~~-~dWPI~y~eL~Py 153 (544)
T TIGR02462 80 LDPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER---PKLS-DDAAEDDAEWDRL 153 (544)
T ss_pred CCccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc---cCCC-CCCCCCHHHHHHH
Confidence 01112211 0000000 00 00111 134679999999999999999999652 2233 699 99999999
Q ss_pred HHHHHhcC
Q psy7388 181 FKKSMDQR 188 (224)
Q Consensus 181 f~k~E~~~ 188 (224)
|.++|+..
T Consensus 154 Y~~Ae~~~ 161 (544)
T TIGR02462 154 YTKAESLI 161 (544)
T ss_pred HHHHHHHh
Confidence 99999964
No 8
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.47 E-value=1.5e-07 Score=86.54 Aligned_cols=37 Identities=46% Similarity=0.794 Sum_probs=34.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
++||+||||+|+||+++|.+|++++ .+|||||++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC-CeEEEEecCCCC
Confidence 4799999999999999999999998 999999999764
No 9
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.31 E-value=6.7e-07 Score=83.28 Aligned_cols=36 Identities=39% Similarity=0.549 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.||+||||+|+||+++|..|++++ .+|+|||++..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G-~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREG-AQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCC-CeEEEEEcCCC
Confidence 4699999999999999999999997 89999999864
No 10
>PRK10015 oxidoreductase; Provisional
Probab=98.31 E-value=7.2e-07 Score=83.22 Aligned_cols=36 Identities=39% Similarity=0.590 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++||+||||+|+||+++|..|++.+ .+|+|||+++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G-~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAG-LDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCC-CeEEEEecCCC
Confidence 4699999999999999999999987 99999999875
No 11
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.21 E-value=1.2e-06 Score=75.09 Aligned_cols=36 Identities=36% Similarity=0.511 Sum_probs=30.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+||++|||+|++|+++|..|++++ +||+++|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g-~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAG-LKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHT-S-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCC-CeEEEEecCCC
Confidence 5799999999999999999999996 99999998653
No 12
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.15 E-value=2.3e-06 Score=73.79 Aligned_cols=34 Identities=47% Similarity=0.754 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
||+||||+|++|+++|.+|++.+ .+|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g-~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG-LRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence 79999999999999999999986 89999999975
No 13
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.13 E-value=2.9e-06 Score=74.57 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~ 96 (224)
+||+||||+|++|+++|..|++++ .+|+|+|+-+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G-~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAG-IDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTT-CEEEEEESSSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhcc-cccccchhccccc
Confidence 589999999999999999999997 9999999987643
No 14
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.12 E-value=2.5e-06 Score=78.03 Aligned_cols=32 Identities=38% Similarity=0.692 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
||+||||+|+||+++|..|++.+ .+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G-~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG-IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-CcEEEEECC
Confidence 79999999999999999999987 999999997
No 15
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.11 E-value=3.3e-06 Score=73.80 Aligned_cols=36 Identities=39% Similarity=0.476 Sum_probs=33.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+||+||||+|++|+++|.+|++.+ .+|+|||++..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G-~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNG-LKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence 4799999999999999999999987 89999999864
No 16
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.10 E-value=2.9e-06 Score=79.05 Aligned_cols=35 Identities=40% Similarity=0.637 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
||+||||+|+||+++|.+|++.+ .+|+|||++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g-~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG-ARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCccc
Confidence 89999999999999999999987 999999999764
No 17
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.08 E-value=3.6e-06 Score=79.20 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...||+||||+|+||+++|..|++.| .+|+|||+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G-~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGG-IETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence 35799999999999999999999987 99999999753
No 18
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.06 E-value=4.5e-06 Score=78.17 Aligned_cols=35 Identities=40% Similarity=0.441 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+||||+|.+|+.+|.++++.+ .+|+|||+++
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G-~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAG-ASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 5799999999999999999999997 8999999875
No 19
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.05 E-value=5.2e-06 Score=72.59 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+||+||||+|+||+++|.+|++.+ .+|+|||+...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G-~~V~liEk~~~ 59 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAG-LKVAVFERKLS 59 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCC-CeEEEEecCCC
Confidence 4699999999999999999999976 99999998754
No 20
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.03 E-value=5.9e-06 Score=74.50 Aligned_cols=36 Identities=36% Similarity=0.451 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+||+||||+|..|+.+|..|++.+ .+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g-~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRG-LRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC-CeEEEEecccC
Confidence 3699999999999999999999987 89999999853
No 21
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=8.3e-06 Score=74.68 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
..+||+||||+|++|+++|..|++.+ ++|+|||+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG-LRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC-CEEEEEecCCcc
Confidence 35799999999999999999999987 999999998753
No 22
>PRK06116 glutathione reductase; Validated
Probab=98.02 E-value=5.8e-06 Score=77.15 Aligned_cols=34 Identities=50% Similarity=0.696 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G-~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYG-AKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CeEEEEecc
Confidence 4699999999999999999999987 899999986
No 23
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.02 E-value=8.1e-06 Score=57.24 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=27.7
Q ss_pred EECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 64 VVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 64 VVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
|||+|.+|+.+|.+|++.+ ++|+|+|+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g-~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG-YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT-SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCC-CcEEEEecCccc
Confidence 8999999999999999986 899999998764
No 24
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.02 E-value=5.6e-06 Score=77.86 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++||+||||+|.+||++|.-|+.+| +|||+||+....
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~G-kkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNG-KKVLHMDRNPYY 39 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCC-CEEEEecCCCCc
Confidence 46899999999999999999999997 899999997643
No 25
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=6.1e-06 Score=76.79 Aligned_cols=35 Identities=31% Similarity=0.657 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++||+||||+|+||..+|.+|++.+ .+|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g-~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAG-WRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCC-CeEEEEcCCC
Confidence 3699999999999999999999987 8999999874
No 26
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.01 E-value=5.8e-06 Score=77.53 Aligned_cols=34 Identities=47% Similarity=0.747 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
++||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G-~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHG-AKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC-CcEEEeccc
Confidence 3699999999999999999999987 899999985
No 27
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.00 E-value=6.6e-06 Score=74.83 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++||+||||+|++|+.+|..|++.+ ++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHG-FSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCC-CEEEEEcCCC
Confidence 5799999999999999999999986 9999999975
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.00 E-value=7.3e-06 Score=74.29 Aligned_cols=37 Identities=35% Similarity=0.591 Sum_probs=33.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
..+|+||||+|++|+++|..|++.+ .+|+|||+++..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G-~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSG-LRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCC-CeEEEEecCCCc
Confidence 4699999999999999999999986 899999999763
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.99 E-value=6.2e-06 Score=78.22 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..+|+||||+|.+|+++|.+|+++| ++|+|||+-.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G-~~V~VlE~~~ 36 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG-LKVTVLEKND 36 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC-CEEEEEEecC
Confidence 3699999999999999999999998 9999999754
No 30
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.99 E-value=7.6e-06 Score=72.01 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
|+||||+|.+|+++|..|++.+ .+|+|||++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G-~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG-HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT-SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-CeEEEEeecc
Confidence 8999999999999999999986 8999999994
No 31
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.99 E-value=7.1e-06 Score=77.94 Aligned_cols=36 Identities=36% Similarity=0.532 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++||+||||||..|+.+|..|+..+ .+|+|||++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG-~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRG-LKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCC-CcEEEEECCC
Confidence 46799999999999999999999997 9999999995
No 32
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.99 E-value=6.2e-06 Score=70.86 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.+-|+||||+|++|+++|+.|++++ .||+++|+-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g-~kV~i~E~~ 62 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG-LKVAIFERK 62 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC-ceEEEEEee
Confidence 4689999999999999999999996 999999984
No 33
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.98 E-value=7.8e-06 Score=77.92 Aligned_cols=36 Identities=33% Similarity=0.569 Sum_probs=33.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++||+||||+|..|+.+|..|+..+ .||+|||++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG-l~V~LvEk~d 39 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRG-LSVLLCEQDD 39 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 45799999999999999999999987 9999999974
No 34
>PRK07121 hypothetical protein; Validated
Probab=97.98 E-value=1.1e-05 Score=76.42 Aligned_cols=37 Identities=35% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..++|+||||+|.||+.+|.+++|++ .+|+|||+...
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G-~~VillEK~~~ 54 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAG-ARVLVLERAAG 54 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence 35799999999999999999999987 89999999764
No 35
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=7.7e-06 Score=73.62 Aligned_cols=34 Identities=32% Similarity=0.665 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
||+||||||.+|+|+|..|++.+ .+||+||+-..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~g-k~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcC-CEEEEEecccc
Confidence 89999999999999999888876 89999999764
No 36
>PRK09126 hypothetical protein; Provisional
Probab=97.96 E-value=8.7e-06 Score=74.01 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+||+||||+|++|+++|..|++.+ ++|+|+|+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G-~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG-LKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC-CcEEEEeCCCc
Confidence 699999999999999999999987 99999999875
No 37
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.96 E-value=8.5e-06 Score=74.85 Aligned_cols=33 Identities=45% Similarity=0.622 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|.||+++|.+++|++ .+|+|||+++.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G-~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG-AKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT-T-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhc-CeEEEEEeecc
Confidence 8999999999999999999998 79999999986
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.95 E-value=1e-05 Score=73.85 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+|+||||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G-~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG-LSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC-CEEEEEeCCCC
Confidence 35799999999999999999999987 89999999763
No 39
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.95 E-value=1.1e-05 Score=76.92 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=34.3
Q ss_pred cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...++|+||||+|.+|+.+|.++++.+ .+|+|||+.+.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~G-a~VivlEK~~~ 95 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAG-MNPVILEKMPV 95 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence 346899999999999999999999987 89999998764
No 40
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.95 E-value=8e-06 Score=75.35 Aligned_cols=33 Identities=36% Similarity=0.509 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+|+||||+|+||+++|..|++.+ .+|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G-~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG-IQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CcEEEEecCC
Confidence 69999999999999999999987 9999999864
No 41
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.95 E-value=9.5e-06 Score=76.29 Aligned_cols=35 Identities=40% Similarity=0.684 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G-~~v~lie~~~ 37 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLG-LKTALVEKGK 37 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC-CeEEEEEccC
Confidence 5799999999999999999999987 8999999863
No 42
>PRK06370 mercuric reductase; Validated
Probab=97.95 E-value=1e-05 Score=75.90 Aligned_cols=36 Identities=42% Similarity=0.543 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G-~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLG-MKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCC-CeEEEEecCc
Confidence 35799999999999999999999987 8999999863
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.95 E-value=9.4e-06 Score=73.29 Aligned_cols=34 Identities=41% Similarity=0.516 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
||+||||+|.+|+.+|..|++.+ .+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g-~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHG-KKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence 79999999999999999999987 89999999753
No 44
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=74.50 Aligned_cols=36 Identities=33% Similarity=0.632 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.+|+||||+|+||.++|..+++.+ .+|+|||+++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G-~~V~lid~~~k 37 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG-RRVLLIDKGPK 37 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC-CEEEEEecCcc
Confidence 4699999999999999999999987 89999999974
No 45
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.93 E-value=1.1e-05 Score=74.98 Aligned_cols=35 Identities=40% Similarity=0.631 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g-~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAG-KKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCC-CEEEEEecCC
Confidence 3699999999999999999999987 8999999874
No 46
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.91 E-value=1.1e-05 Score=75.52 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
+||+||||+|+||..+|.++++.+ .+|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G-~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG-AKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecC
Confidence 699999999999999999999987 899999984
No 47
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.91 E-value=1.3e-05 Score=72.36 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
||+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G-~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG-LSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 69999999999999999999986 8999999975
No 48
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.91 E-value=1.2e-05 Score=73.56 Aligned_cols=34 Identities=35% Similarity=0.604 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+||++|||+|++|+++|..|++.+ ++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G-~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSG-LEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCC-CEEEEEcCCC
Confidence 589999999999999999999986 9999999976
No 49
>PRK08013 oxidoreductase; Provisional
Probab=97.90 E-value=1.3e-05 Score=73.53 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+||+||||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G-~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG-LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC-CEEEEEeCCCC
Confidence 599999999999999999999987 99999999875
No 50
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.90 E-value=1.4e-05 Score=72.70 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.||+||||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G-~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAG-ASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCC-CeEEEEeCCCC
Confidence 4699999999999999999999986 99999999764
No 51
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.90 E-value=1.2e-05 Score=73.71 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+|+||||+|..|+.+|.+|++.+ .+|+|||++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g-~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG-YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 69999999999999999999986 8999999986
No 52
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.89 E-value=1.4e-05 Score=72.86 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
||+||||+|++|+++|..|++.+ +++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 89999999999999999999974 599999999864
No 53
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.88 E-value=1.3e-05 Score=78.06 Aligned_cols=35 Identities=46% Similarity=0.496 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|+||+.+|..+++.| .+|+|||...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G-~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMG-AKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcC-CcEEEEeccc
Confidence 4699999999999999999999987 9999999974
No 54
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=1.4e-05 Score=74.69 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G-~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLG-LKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCC-CcEEEEeccc
Confidence 4799999999999999999999987 8999999864
No 55
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.87 E-value=1.5e-05 Score=73.01 Aligned_cols=34 Identities=38% Similarity=0.614 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHH--hcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRL--SENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rL--ae~~~~~VLlLEaG~~~ 95 (224)
|+||||+|+||+.+|.+| +.. +.+|+|||..+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence 899999999999999999 665 4999999998754
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.87 E-value=1.6e-05 Score=72.31 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|+||+.+|.+|++.+ .+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCC
Confidence 8999999999999999999876 89999998764
No 57
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.86 E-value=1.6e-05 Score=74.26 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..||+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G-~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLG-KRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC-CEEEEEeccc
Confidence 4699999999999999999999987 8999999863
No 58
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.86 E-value=1.4e-05 Score=74.50 Aligned_cols=34 Identities=47% Similarity=0.653 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
|+||||+|+||+.+|..+++.| .||||||+++..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G-~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG-AKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-S-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCC-CEEEEEECCccC
Confidence 8999999999999999999997 899999998753
No 59
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.86 E-value=1.6e-05 Score=74.17 Aligned_cols=32 Identities=44% Similarity=0.694 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
+||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G-~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLG-LKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence 499999999999999999999987 89999998
No 60
>PRK07045 putative monooxygenase; Reviewed
Probab=97.86 E-value=1.7e-05 Score=72.25 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|++|||+|++|+++|.-|++.+ ++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G-~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG-HSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC-CcEEEEeCCCcc
Confidence 4699999999999999999999986 999999998754
No 61
>PRK06185 hypothetical protein; Provisional
Probab=97.86 E-value=1.7e-05 Score=72.60 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G-~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAG-VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCc
Confidence 5799999999999999999999986 99999999864
No 62
>PLN02463 lycopene beta cyclase
Probab=97.86 E-value=1.6e-05 Score=74.89 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=33.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...||+||||+|+||+.+|..|++.+ .+|+|||..+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~G-l~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAG-LSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCC-CeEEEeccCcc
Confidence 35699999999999999999999986 99999999763
No 63
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.85 E-value=1.6e-05 Score=72.74 Aligned_cols=36 Identities=36% Similarity=0.681 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
.||+||||+|.+|+.+|..|++. ++.+|+|||++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 48999999999999999999986 2389999999853
No 64
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.85 E-value=1.8e-05 Score=71.28 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|++|+++|..|++.+ .+|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G-~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG-LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC-CEEEEEeCCCc
Confidence 8999999999999999999987 99999999975
No 65
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.85 E-value=1.8e-05 Score=73.03 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
||++|||+|.+|+++|.+|++.+ .+|+|||++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G-~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN-KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCC
Confidence 79999999999999999999876 8999999854
No 66
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.84 E-value=1.9e-05 Score=68.54 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
||+||||+|+||+.+|..|++.+ .+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN-LKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC-CCEEEEeccC
Confidence 79999999999999999999986 8999999875
No 67
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.84 E-value=1.7e-05 Score=74.58 Aligned_cols=32 Identities=34% Similarity=0.580 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
+||+||||+|+||..+|.++++.+ .+|+|+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G-~~V~liE~ 34 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLG-LKVACVEG 34 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence 599999999999999999999987 89999996
No 68
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.84 E-value=1.8e-05 Score=74.90 Aligned_cols=34 Identities=44% Similarity=0.511 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
||+||||+|.+|+++|..|++++ .+|+|||+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G-~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG-AKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC-CcEEEEECCCC
Confidence 79999999999999999999997 99999999754
No 69
>KOG1298|consensus
Probab=97.83 E-value=1.8e-05 Score=72.81 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=34.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
...+|+||||+|.+|+.+|..|+++| +||+|||+--.+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdG-RrVhVIERDl~E 80 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSE 80 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCC-cEEEEEeccccc
Confidence 35799999999999999999999998 899999997544
No 70
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.83 E-value=2e-05 Score=75.80 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|..|+.+|..|++.+ .+|+|||++.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG-~~V~LlEk~d 39 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRG-LRCILVERHD 39 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC-CeEEEEECCC
Confidence 3699999999999999999999987 8999999974
No 71
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.83 E-value=2e-05 Score=73.99 Aligned_cols=36 Identities=36% Similarity=0.491 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~ 93 (224)
.++|+||||+|..|+.+|.+|++. ++.+|+|||++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 469999999999999999999996 348999999975
No 72
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=2.1e-05 Score=74.13 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G-~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLG-LETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence 4699999999999999999999987 8999999853
No 73
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=2.2e-05 Score=73.38 Aligned_cols=34 Identities=47% Similarity=0.686 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLG-KKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 3699999999999999999999987 899999984
No 74
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=2.2e-05 Score=73.73 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
++||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G-~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLG-LKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC-CeEEEEecC
Confidence 3699999999999999999999986 899999986
No 75
>PRK13748 putative mercuric reductase; Provisional
Probab=97.82 E-value=2.1e-05 Score=75.30 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G-~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG-ARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC-CeEEEEecCc
Confidence 4699999999999999999999987 8999999863
No 76
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.81 E-value=2.1e-05 Score=76.97 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=33.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++||+||||+|..|+.+|..|+..+ .+|+|||++.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rG-l~V~LvE~~d 104 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRG-LRVGLVERED 104 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCC-CEEEEEeccc
Confidence 35699999999999999999999997 9999999984
No 77
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.81 E-value=2.2e-05 Score=73.60 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g-~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG-ASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCc
Confidence 79999999999999999999987 8999999853
No 78
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.81 E-value=2.3e-05 Score=75.35 Aligned_cols=35 Identities=46% Similarity=0.635 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+||||+|.||+.+|.++++++ .+|+|||+++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G-~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAG-KRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 5799999999999999999999997 8999999987
No 79
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.81 E-value=2.3e-05 Score=71.56 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+||++|||+|++|+++|..|++.+ .+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G-~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG-RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC-CcEEEEcCCC
Confidence 589999999999999999999987 9999999875
No 80
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.81 E-value=2.4e-05 Score=71.78 Aligned_cols=37 Identities=38% Similarity=0.494 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~ 93 (224)
..+||+||||+|..|+.+|..|++. +..+|+|||++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 3579999999999999999999985 534899999974
No 81
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.81 E-value=2.5e-05 Score=70.61 Aligned_cols=35 Identities=40% Similarity=0.526 Sum_probs=32.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
|+||||+|++|+++|..|++.++++|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999865899999998753
No 82
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.80 E-value=2.2e-05 Score=74.87 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+| +|+.+|.+++|.+ .+|+|||+.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G-~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREG-LSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCC-CcEEEEecCCC
Confidence 58999999999 9999999999987 89999997754
No 83
>PLN02661 Putative thiazole synthesis
Probab=97.79 E-value=2.4e-05 Score=71.60 Aligned_cols=37 Identities=43% Similarity=0.614 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|++|+++|..|+++++.+|+|||++..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 4699999999999999999999875699999999754
No 84
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.78 E-value=2.6e-05 Score=70.82 Aligned_cols=34 Identities=44% Similarity=0.514 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcC---CCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG 92 (224)
+.+|+||||+|++|+++|..|++. + .+|+|||+-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G-~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG-LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC-CEEEEEeCC
Confidence 469999999999999999999987 6 999999994
No 85
>PLN02985 squalene monooxygenase
Probab=97.78 E-value=3e-05 Score=74.23 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...||+||||+|.+|+++|..|++++ ++|+|||+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G-~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG-RRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC-CeEEEEECcCC
Confidence 35799999999999999999999987 99999999753
No 86
>PRK14694 putative mercuric reductase; Provisional
Probab=97.78 E-value=2.6e-05 Score=73.30 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g-~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERG-ARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC-CcEEEEEccc
Confidence 5799999999999999999999987 8999999874
No 87
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.77 E-value=2.9e-05 Score=74.84 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..||+||||||+||+.+|.+|++.+ .+|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g-~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAK-LDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Confidence 4699999999999999999999986 8999999875
No 88
>PLN02697 lycopene epsilon cyclase
Probab=97.76 E-value=2.6e-05 Score=74.93 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..||+||||+|+||+.+|.+|++.+ .+|+|||.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G-l~V~LIe~~~ 141 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 141 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC-CcEEEecCcc
Confidence 4699999999999999999999986 9999999863
No 89
>PTZ00058 glutathione reductase; Provisional
Probab=97.76 E-value=2.8e-05 Score=75.16 Aligned_cols=35 Identities=49% Similarity=0.706 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
..+||+||||+|+||..+|.++++.+ .+|+|||++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G-~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNK-AKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcC-CeEEEEecc
Confidence 36799999999999999999999987 899999985
No 90
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.76 E-value=3.4e-05 Score=74.13 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=33.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..++|+||||+|.||+.+|.+++|.+ .+|+|||++..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G-~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAG-RRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcC-CeEEEEEccCC
Confidence 35799999999999999999999986 89999999874
No 91
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.75 E-value=3e-05 Score=71.05 Aligned_cols=33 Identities=45% Similarity=0.888 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~ 93 (224)
|+||||+|+||+.+|.+|++. ++.+|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999985 359999999987
No 92
>PRK06996 hypothetical protein; Provisional
Probab=97.75 E-value=3.4e-05 Score=70.79 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=33.1
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~ 93 (224)
.++||++|||+|++|+++|..|++.+ +++|+|||+..
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 46799999999999999999999976 26899999975
No 93
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=3.2e-05 Score=72.94 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
.+||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g-~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLG-LKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence 4799999999999999999999987 89999998
No 94
>PRK08244 hypothetical protein; Provisional
Probab=97.74 E-value=3.6e-05 Score=72.62 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
++|++|||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G-~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAG-VKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCC
Confidence 589999999999999999999987 999999998653
No 95
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.73 E-value=3.5e-05 Score=73.35 Aligned_cols=33 Identities=36% Similarity=0.630 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
..||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G-~~V~lie~ 36 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHG-KKVALFDY 36 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence 4699999999999999999999987 89999996
No 96
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.72 E-value=3.4e-05 Score=71.88 Aligned_cols=33 Identities=42% Similarity=0.727 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHhc----CCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSE----NPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae----~~~~~VLlLEaG~ 93 (224)
||+||||+|++|+++|..|++ .+ .+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G-~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKD-LKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCC-CeEEEEeCCC
Confidence 799999999999999999998 55 9999999953
No 97
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.71 E-value=3.5e-05 Score=73.42 Aligned_cols=37 Identities=24% Similarity=0.542 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
..+|+||||||..|+++|..|++. ++++|+|||+...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 469999999999999999999985 4589999998753
No 98
>KOG0029|consensus
Probab=97.71 E-value=3.6e-05 Score=73.50 Aligned_cols=37 Identities=35% Similarity=0.456 Sum_probs=33.7
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+..++||||||.||+.+|..|.+.+ .+|+||||-.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G-~~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFG-FDVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcC-CceEEEeccCC
Confidence 35799999999999999999999998 89999999654
No 99
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.70 E-value=4e-05 Score=70.35 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.+|++|||+|++|+++|..|++.+ ++|+|||+-
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G-~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD-LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC-CEEEEEcCC
Confidence 589999999999999999999986 999999996
No 100
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.69 E-value=4.2e-05 Score=69.67 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+|+||||+|++|+++|..|++.+ ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G-~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG-IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC-CeEEEecCCC
Confidence 79999999999999999999987 9999999874
No 101
>PRK11445 putative oxidoreductase; Provisional
Probab=97.69 E-value=4e-05 Score=69.31 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
||++|||+|+||+++|..|++. .+|+|||+-+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence 8999999999999999999986 7999999876
No 102
>PLN02507 glutathione reductase
Probab=97.69 E-value=4.1e-05 Score=72.91 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
.+||+||||+|+||..+|.++++.+ .+|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G-~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFG-AKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence 4799999999999999999999997 89999995
No 103
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.69 E-value=4.2e-05 Score=72.65 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~ 93 (224)
+|+||||+|.+|+.+|.+|++. ++++|+|||++.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 6999999999999999999995 459999999975
No 104
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.69 E-value=4.2e-05 Score=70.08 Aligned_cols=33 Identities=36% Similarity=0.469 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.+|++|||+|++|+++|..|++.| ++|.|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-CcEEEEccC
Confidence 589999999999999999999998 999999998
No 105
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.68 E-value=4.9e-05 Score=68.58 Aligned_cols=36 Identities=39% Similarity=0.580 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.+|+.+|..|++.+ .+|+|+|++.-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G-~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CEEEEEecCcc
Confidence 5799999999999999999999998 69999999874
No 106
>PRK07208 hypothetical protein; Provisional
Probab=97.68 E-value=5.1e-05 Score=71.10 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+..|+||||+|.+|+++|.+|++++ .+|+|||+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g-~~v~v~E~~~~ 38 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG-YPVTVLEADPV 38 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence 5689999999999999999999986 89999999543
No 107
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.67 E-value=4.9e-05 Score=72.55 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~ 93 (224)
.+||+||||||..|+.+|..|++. +.++|+|||+..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 569999999999999999999995 557999999985
No 108
>PRK06184 hypothetical protein; Provisional
Probab=97.67 E-value=5.1e-05 Score=71.84 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
+++|++|||+|++|+++|..|++.+ ++|+|||+-+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~G-i~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRG-VSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCCC
Confidence 3699999999999999999999997 999999997643
No 109
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.67 E-value=4.7e-05 Score=73.89 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++++ .+|+|||++..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G-~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARG-LDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCC-CcEEEEEcCCC
Confidence 5799999999999999999999987 89999998764
No 110
>PRK06847 hypothetical protein; Provisional
Probab=97.67 E-value=5.5e-05 Score=68.24 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+..|++|||+|++|+++|..|++.+ .+|+|+|+-+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g-~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG-IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence 4689999999999999999999986 99999998764
No 111
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.66 E-value=5.1e-05 Score=69.45 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+|++|||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G-~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG-IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC-CCEEEEEcCCc
Confidence 589999999999999999999987 99999999874
No 112
>PRK07190 hypothetical protein; Provisional
Probab=97.66 E-value=5.2e-05 Score=72.01 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
..+|+||||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~G-i~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCG-LNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcC-CCEEEEeCCCcc
Confidence 4699999999999999999999987 999999998753
No 113
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.66 E-value=5.2e-05 Score=73.30 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.+|+.+|.++++++ .+|+|||+...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G-~~v~llEk~~~ 43 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLG-LDVVVLEKEPV 43 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence 4799999999999999999999987 79999999764
No 114
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.66 E-value=5e-05 Score=71.74 Aligned_cols=35 Identities=46% Similarity=0.671 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|+||-++|.|+++.+ .||+|+|+++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G-~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC-CCEEEEeecC
Confidence 5799999999999999999999998 5599999995
No 115
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.65 E-value=4.6e-05 Score=72.38 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.+||+||||+|+||..+|.++++..+.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999623899999973
No 116
>PTZ00367 squalene epoxidase; Provisional
Probab=97.65 E-value=5.3e-05 Score=73.40 Aligned_cols=35 Identities=49% Similarity=0.708 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||+||||+|++|+++|..|++.+ .+|+|||+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G-~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQG-RKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcC-CEEEEEcccc
Confidence 5799999999999999999999987 8999999976
No 117
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.64 E-value=5.6e-05 Score=71.27 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-|+||||||.+|+++|.+|++++ ++|+|||+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G-~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG-YRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 58999999999999999999987 99999998754
No 118
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.64 E-value=5.3e-05 Score=69.55 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+|++|||+|++|+++|..|++.+ ++|+|||+-+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G-~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG-IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence 589999999999999999999987 99999999874
No 119
>PLN02546 glutathione reductase
Probab=97.62 E-value=5.5e-05 Score=73.11 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
.+||+||||+|+||..+|.++++.+ .+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G-~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFG-ASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence 4699999999999999999999987 89999995
No 120
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.62 E-value=5.7e-05 Score=74.15 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|+||||+|.+|+.+|..|++.+ ++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G-~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRG-WQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 589999999999999999999987 8999999985
No 121
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.62 E-value=5.8e-05 Score=70.57 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++. .+ .+|+|||+++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G-~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KD-LKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cC-CCEEEEecCCC
Confidence 4799999999999999999975 45 89999999865
No 122
>PRK08275 putative oxidoreductase; Provisional
Probab=97.62 E-value=5.9e-05 Score=72.61 Aligned_cols=37 Identities=41% Similarity=0.656 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ +.+|+|||+++.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4699999999999999999999863 489999999875
No 123
>PLN02576 protoporphyrinogen oxidase
Probab=97.62 E-value=6.6e-05 Score=70.67 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.+|+++|.+|+++ + .+|+|||+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g-~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHG-VNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcC-CCEEEEecCCC
Confidence 468999999999999999999998 6 89999999754
No 124
>PRK06834 hypothetical protein; Provisional
Probab=97.61 E-value=6.4e-05 Score=71.38 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|++|+++|..|++.+ ++|+|||+-+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G-~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAG-VDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence 3599999999999999999999987 99999998764
No 125
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.61 E-value=6.6e-05 Score=69.73 Aligned_cols=34 Identities=35% Similarity=0.337 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|.+|+.+|.+++|++..+|+|||+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 8999999999999999999985369999998764
No 126
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.60 E-value=6.3e-05 Score=73.49 Aligned_cols=36 Identities=33% Similarity=0.314 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G-~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELG-YKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC-CcEEEEeccCC
Confidence 5799999999999999999999986 89999999864
No 127
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.60 E-value=6.9e-05 Score=72.29 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+||||+|.+|+.+|.+|++.+ .+|+|||+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G-~~v~liEk~~ 39 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSG-LEPLIVEKQD 39 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence 4799999999999999999999987 8999999864
No 128
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=6.2e-05 Score=72.84 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
++|+||||+|.||+.+|.++++.+ +.+|+|||++..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 689999999999999999999864 379999999864
No 129
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.59 E-value=7.2e-05 Score=68.53 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
|+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g-~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAG-HEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCC
Confidence 7999999999999999999986 8999999985
No 130
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.59 E-value=6.5e-05 Score=73.24 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcC--CCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++. + .+|+|||++..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G-~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPD-LKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCC-CeEEEEECCCc
Confidence 469999999999999999999997 5 89999999763
No 131
>PRK07588 hypothetical protein; Provisional
Probab=97.59 E-value=7.1e-05 Score=68.25 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|++|+++|..|++.+ .+|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G-~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYG-HEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCC-CceEEEeCCCC
Confidence 7999999999999999999987 89999999865
No 132
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.59 E-value=7.1e-05 Score=72.73 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||.+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G-~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSG-QSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC-CcEEEEEccCC
Confidence 4799999999999999999999986 89999999853
No 133
>PLN02268 probable polyamine oxidase
Probab=97.58 E-value=8.1e-05 Score=68.91 Aligned_cols=33 Identities=42% Similarity=0.662 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++||||+|.+|+.+|.+|.+.+ .+|+||||..+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g-~~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDAS-FKVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCCC
Confidence 7899999999999999999976 89999999765
No 134
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.58 E-value=7.1e-05 Score=72.85 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G-~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAG-LKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC-CcEEEEEccCC
Confidence 4799999999999999999999987 89999999753
No 135
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.58 E-value=7.1e-05 Score=72.34 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G-~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAG-FKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCC-CcEEEEEccCC
Confidence 4699999999999999999999986 89999998753
No 136
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.57 E-value=7.6e-05 Score=73.49 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
++||+||||+|+||..+|.++++.+ .||+|+|.+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G-~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERG-LKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCC
Confidence 3799999999999999999999987 899999965
No 137
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.57 E-value=7.8e-05 Score=72.44 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||++.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G-~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAG-LSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCC-CcEEEEeccC
Confidence 4699999999999999999999986 8999999974
No 138
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=7.4e-05 Score=73.10 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G-~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERG-LRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCC-CCEEEEeccCC
Confidence 4699999999999999999999987 89999999753
No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.56 E-value=9.2e-05 Score=70.83 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=33.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|+||||+|++|+++|..|++.+ ++|+|||+.+..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G-~~v~v~Er~~~~ 45 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYG-VRVLVLERWPTL 45 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCC
Confidence 5799999999999999999999986 999999998753
No 140
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.56 E-value=9.1e-05 Score=67.39 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...|+||||+|++|+++|..|++.+ ++|+|+|+.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g-~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG-IKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC-CcEEEEeeCcc
Confidence 4589999999999999999999987 99999999864
No 141
>PRK06753 hypothetical protein; Provisional
Probab=97.56 E-value=8.6e-05 Score=67.02 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
|+||||+|++|+++|..|++.+ ++|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQG-HEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcc
Confidence 7999999999999999999987 999999998753
No 142
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.56 E-value=8.2e-05 Score=71.02 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=31.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEa 91 (224)
+++|+||||||.+|+++|..|++. +.++|+|||+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 579999999999999999999985 4599999999
No 143
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.53 E-value=0.0001 Score=68.96 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+||+||||+|.+|+.+|.+|++.+ .+|+|||+|.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g-~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAG-KRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC-CcEEEEECCC
Confidence 599999999999999999999987 8999999985
No 144
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.53 E-value=9.8e-05 Score=68.64 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~~ 94 (224)
.|+||||+|.+|+++|.+|+++. +.+|+|+|+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 69999999999999999999972 389999999754
No 145
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.52 E-value=9.7e-05 Score=69.63 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+|+||||+|.||+.+|.+++|.+ .+|+|||++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G-~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKG-FDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence 79999999999999999999987 89999999753
No 146
>PRK07236 hypothetical protein; Provisional
Probab=97.52 E-value=0.00011 Score=67.07 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+..|+||||+|++|+++|.-|++.+ ++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG-WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence 4589999999999999999999987 99999999863
No 147
>PRK06126 hypothetical protein; Provisional
Probab=97.52 E-value=0.00011 Score=70.26 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|++|||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G-~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRG-VDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence 5799999999999999999999987 99999998764
No 148
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.51 E-value=0.00011 Score=70.93 Aligned_cols=36 Identities=36% Similarity=0.567 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+++|+||||+|.+|+++|.++++.+ .+|+|||+.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G-~~v~llEk~~~ 41 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRG-LSTVVVEKAPH 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence 5799999999999999999999987 89999999653
No 149
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.51 E-value=9.9e-05 Score=72.41 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||.+..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G-~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHG-FNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcC-CcEEEEEcCCC
Confidence 4799999999999999999999987 89999999863
No 150
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.51 E-value=0.00011 Score=60.37 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=25.2
Q ss_pred EEECCChHHHHHHHHHhcCCCCe-EEEeecCCC
Q psy7388 63 IVVGGGSAGNVVANRLSENPNWK-VLLLEAGGH 94 (224)
Q Consensus 63 IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~~ 94 (224)
||||+|++|+.+|.+|.+.+ .+ |+|||++..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g-~~~v~v~e~~~~ 32 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG-IDPVVVLERNDR 32 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT----EEEEESSSS
T ss_pred CEECcCHHHHHHHHHHHhCC-CCcEEEEeCCCC
Confidence 79999999999999999997 67 999999865
No 151
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.50 E-value=8.3e-05 Score=70.21 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+||||||.+|+++|.+|+++| ++|+|||+-..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G-~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG-IPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC-CcEEEEECCCC
Confidence 589999999999999999987 99999999765
No 152
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.50 E-value=0.00016 Score=69.33 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..++|++|||+|++|+++|..|++.+ .+|+|||+-+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQG-VPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC-CcEEEEeCCCC
Confidence 36799999999999999999999987 99999999864
No 153
>PRK14727 putative mercuric reductase; Provisional
Probab=97.49 E-value=0.00012 Score=69.09 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
..||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g-~~v~~ie~~ 48 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHG-ARVTIIEGA 48 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEEcc
Confidence 4699999999999999999999987 899999987
No 154
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.49 E-value=0.00011 Score=71.22 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCC--CeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPN--WKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~--~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+. .+|+|||++..
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 46999999999999999999999863 79999998764
No 155
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.48 E-value=0.00013 Score=68.46 Aligned_cols=37 Identities=43% Similarity=0.747 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
.+||++|||+|..|+++|..|++- |+++|+|||+=..
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~ 39 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDG 39 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 479999999999999999999995 4599999999754
No 156
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.48 E-value=0.00011 Score=70.66 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G-~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG-LNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC-CcEEEEeccCC
Confidence 8999999999999999999987 89999999753
No 157
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.47 E-value=0.00013 Score=67.29 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
++||||||.||+++|.+|++.+ +.+|+|||+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~ 36 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR 36 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 5899999999999999999974 379999999653
No 158
>PRK10262 thioredoxin reductase; Provisional
Probab=97.47 E-value=0.00013 Score=64.84 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
..+|++|||+|+||+.+|..|++.+ .+|+++|..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g-~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARAN-LQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC-CCeEEEEee
Confidence 5799999999999999999999986 789999864
No 159
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.46 E-value=0.00013 Score=71.60 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G-~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELG-YNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC-CcEEEEecCC
Confidence 4699999999999999999999986 8999999743
No 160
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.46 E-value=0.00012 Score=72.09 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||..+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G-~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRG-LDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcC-CCEEEEeCCCC
Confidence 4699999999999999999999987 89999998764
No 161
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.46 E-value=0.00013 Score=69.23 Aligned_cols=32 Identities=44% Similarity=0.744 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
+||+||||+|+||..+|.++++.+ .+|+|||+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G-~~v~lie~ 33 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYG-AKVMLLDF 33 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence 599999999999999999999987 89999996
No 162
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00014 Score=65.27 Aligned_cols=35 Identities=43% Similarity=0.646 Sum_probs=30.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~ 93 (224)
+.||+||||||+||+.+|-.+++.+ ++ ++++|.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~-l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG-LKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC-CCcEEEEecCC
Confidence 4699999999999999999999986 77 88888753
No 163
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.00012 Score=70.26 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++ +.+ .+|+|||++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G-~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERG-KNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcC-CCEEEEEccCC
Confidence 468999999999999999999 876 89999999753
No 164
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.45 E-value=0.00014 Score=70.47 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++||+||||+| +|..+|.+.++.+ .+|+|||+.+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G-~~v~v~Ek~~ 48 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELG-LSVLIVEKSS 48 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCC-CcEEEEecCC
Confidence 358999999999 8999999999987 8999999874
No 165
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.45 E-value=0.00017 Score=58.99 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
|+||||+|+||..+|.+|++.+ .+|+++|..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~-~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG-AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCC-CeEEEEeccc
Confidence 7999999999999999999765 9999998765
No 166
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.45 E-value=0.00016 Score=65.98 Aligned_cols=38 Identities=39% Similarity=0.614 Sum_probs=34.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~ 96 (224)
.++|+||||+|.||+|+|.+|++.+ ++|++||.-+..+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG-~~V~ildQEgeqn 41 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAG-KRVLILDQEGEQN 41 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcC-ceEEEEccccccc
Confidence 5799999999999999999999997 8999999876543
No 167
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.00014 Score=70.76 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..|+||||+|.||+.+|.++++.+ .+|+|||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G-~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAG-VHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcC-CcEEEEEccC
Confidence 469999999999999999999987 8999999764
No 168
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.44 E-value=0.00014 Score=70.28 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=31.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..++|+||||+|.||+.+|.++++ + .+|+|||+++.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G-~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-H-LRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-C-CCEEEEEccCC
Confidence 467999999999999999999865 5 89999999864
No 169
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.00014 Score=70.56 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++. .+|+|||++..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~--~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR--ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC--CCEEEEeCCCC
Confidence 479999999999999999999974 79999999753
No 170
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.43 E-value=0.00014 Score=70.66 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++++ +.+|+|||++..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 4699999999999999999999864 479999999853
No 171
>PRK07233 hypothetical protein; Provisional
Probab=97.43 E-value=0.00017 Score=66.03 Aligned_cols=34 Identities=35% Similarity=0.520 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
++||||+|.+|+++|..|++.+ .+|+|||+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G-~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG-HEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CcEEEEEeCCCC
Confidence 5899999999999999999987 899999998653
No 172
>PRK12839 hypothetical protein; Provisional
Probab=97.42 E-value=0.00017 Score=69.86 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+||||+|.+|+.+|..|++.+ .+|+|||++.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g-~~v~~iek~~ 41 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGG-AKVLVVEKAS 41 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence 5799999999999999999999987 8999999874
No 173
>PRK07538 hypothetical protein; Provisional
Probab=97.40 E-value=0.00018 Score=66.35 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|+||||+|++|+++|..|++.+ .+|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G-~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG-IEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC-CcEEEEEcCCc
Confidence 8999999999999999999986 89999999764
No 174
>PLN02815 L-aspartate oxidase
Probab=97.38 E-value=0.00018 Score=70.06 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ +|+|||.+..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G--~VvlleK~~~ 62 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG--TVAIITKDEP 62 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC--CEEEEECCCC
Confidence 4699999999999999999999986 7999999874
No 175
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.38 E-value=0.00022 Score=69.88 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=34.0
Q ss_pred cCCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 56 LLMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 56 ~~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
+.+++|++|||+|++|+++|..|++. + ++|+|||+-+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~G-i~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPD-ITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCC-CcEEEEEcCCC
Confidence 45689999999999999999999994 5 99999998764
No 176
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.37 E-value=0.0002 Score=67.92 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|+||||+|.||+.+|.++++.+ . |+|||++..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G-~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG-R-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC-C-EEEEEccCC
Confidence 589999999999999999999987 5 999999853
No 177
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.37 E-value=0.00017 Score=70.01 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++++ +.+|+|||++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 3689999999999999999999863 479999999753
No 178
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.36 E-value=0.0002 Score=68.81 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++. .+|+|||++..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCC
Confidence 469999999999999999999985 79999999864
No 179
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.33 E-value=0.00028 Score=66.67 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|++|+++|..|.+.+ .+|+|+|++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREG-HTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC
Confidence 4689999999999999999999987 89999999753
No 180
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.32 E-value=0.00032 Score=67.95 Aligned_cols=36 Identities=39% Similarity=0.448 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..++|+||||+|.+|+.+|.++++.+ .+|+|||+..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g-~~v~l~ek~~ 49 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAG-LKVLLVERTE 49 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence 35799999999999999999999987 8999999854
No 181
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.32 E-value=0.00023 Score=68.02 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|+||||+|.||+.+|.++++ + .+|+|||+++.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g-~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-E-YNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-C-CCEEEEeccCC
Confidence 7899999999999999999987 5 89999999864
No 182
>PLN02568 polyamine oxidase
Probab=97.31 E-value=0.00031 Score=67.70 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC----CCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENP----NWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~----~~~VLlLEaG~~ 94 (224)
+..|+||||+|.+|+++|.+|++.+ ..+|+|||+...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 4589999999999999999999865 379999999764
No 183
>PLN02676 polyamine oxidase
Probab=97.31 E-value=0.00028 Score=67.06 Aligned_cols=37 Identities=35% Similarity=0.415 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+|+||||+|.+|+.+|.+|++.+..+|+|||+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 3689999999999999999999987336999999764
No 184
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.30 E-value=0.00029 Score=68.30 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..++|+||||+|.+|+.+|.++++++ .+|+|||+.+
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g-~~v~~iek~~ 45 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHG-LKVIVVEKDP 45 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 35799999999999999999999987 8999999864
No 185
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.27 E-value=0.00028 Score=71.80 Aligned_cols=36 Identities=39% Similarity=0.619 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G-~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHG-ANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCC-CeEEEEecccc
Confidence 4799999999999999999999986 89999999864
No 186
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00035 Score=65.48 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+..|+||||+|.+|+++|+.|...+ ++|++||+-+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG-~~v~ilEar~r 41 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAG-YQVQILEARDR 41 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcC-cEEEEEeccCC
Confidence 5799999999999999999999997 99999999654
No 187
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.26 E-value=0.00032 Score=66.92 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
...||++|||||+||+.+|.+|++.+ .+|+|+|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G-~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG-IRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEec
Confidence 34699999999999999999999987 89999986
No 188
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.26 E-value=0.0003 Score=65.74 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhcCC-----CCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENP-----NWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~-----~~~VLlLEaG~~ 94 (224)
++||||+|.+|+++|++|++.+ +.+|+|||+...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence 5899999999999999999853 379999999654
No 189
>PRK05868 hypothetical protein; Validated
Probab=97.24 E-value=0.00035 Score=63.78 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|++|||+|++|+++|..|++.+ ++|+|+|+-+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G-~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHG-YSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Confidence 8999999999999999999987 99999999765
No 190
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.24 E-value=0.00034 Score=68.44 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHh----cCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLS----ENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLa----e~~~~~VLlLEaG~~ 94 (224)
|+||||||.||+.+|.+++ +.+ .+|+|||++..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G-~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKG-LKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCC-CeEEEEEccCC
Confidence 8999999999999999998 555 89999999764
No 191
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.23 E-value=0.00034 Score=73.04 Aligned_cols=36 Identities=36% Similarity=0.436 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.+.+|.+ .+|+|||+++.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~G-a~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG-AQVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEEccCC
Confidence 4699999999999999999999987 89999999754
No 192
>KOG2415|consensus
Probab=97.23 E-value=0.00033 Score=65.41 Aligned_cols=38 Identities=34% Similarity=0.524 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSE-----NPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae-----~~~~~VLlLEaG~~ 94 (224)
.+++|+||||+|+||+.+|.||-+ +.+.+|.|+|.+..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~ 116 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE 116 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence 468999999999999999999865 34689999999764
No 193
>PRK07846 mycothione reductase; Reviewed
Probab=97.22 E-value=0.00037 Score=65.47 Aligned_cols=32 Identities=28% Similarity=0.696 Sum_probs=27.7
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+||+||||+|++|..+|.++ .+ .||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G-~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--AD-KRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CC-CeEEEEeCCC
Confidence 49999999999999998875 35 8999999864
No 194
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.22 E-value=0.00037 Score=66.88 Aligned_cols=37 Identities=38% Similarity=0.590 Sum_probs=34.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|+||||||..|+-+|..++..| ++|+|+|++..-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RG-l~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRG-LKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCC-CeEEEEecCccc
Confidence 6899999999999999999999997 999999999753
No 195
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.20 E-value=0.0004 Score=65.18 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-|++|||+|.+|+.+|..|++.+ .+|.|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~G-l~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRG-VPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-CcEEEEEccCc
Confidence 48999999999999999999987 99999998654
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.19 E-value=0.0004 Score=66.26 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=30.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
..||++|||+|+||..+|.+|++.+ .+|+|+|.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G-~~v~li~~ 243 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKG-LRTAMVAE 243 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEec
Confidence 4699999999999999999999986 89999975
No 197
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.18 E-value=0.00043 Score=64.75 Aligned_cols=34 Identities=41% Similarity=0.644 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
||++|||+|.+|+.+|.+|++.+ ++|+|||+|..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g-~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG-KKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC-CCEEEEeCCCc
Confidence 79999999999999999999986 89999999963
No 198
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.17 E-value=0.00045 Score=64.85 Aligned_cols=32 Identities=28% Similarity=0.640 Sum_probs=27.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+||+||||+|++|..+|.++ .+ .||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g-~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--AD-KRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CC-CeEEEEeCCC
Confidence 59999999999999987765 34 8999999853
No 199
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.17 E-value=0.00049 Score=61.04 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+++|||+|.+|+++|+.|.+.+ .+|+|+|+|.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG-~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG-REVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC-cEEEEEEcCC
Confidence 36899999999999999999997 9999999986
No 200
>KOG3855|consensus
Probab=97.13 E-value=0.00045 Score=64.18 Aligned_cols=36 Identities=50% Similarity=0.880 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~ 93 (224)
+.||+||||||+.|..+|..|..++ .+||+|||+|.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 5799999999999999999999865 48999999994
No 201
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.13 E-value=0.00053 Score=63.89 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+++|||+|.+|+++|.+|++.+ .+|+|||+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G-~~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG-HTPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence 4899999999999999999987 89999999753
No 202
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.12 E-value=0.00051 Score=66.57 Aligned_cols=37 Identities=38% Similarity=0.534 Sum_probs=34.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.+||+||||+|.||+.+|.++++.+ .+|+|||.....
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g-~~V~l~~K~~~~ 41 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAG-LKVALLSKAPPK 41 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcC-CcEEEEEccccC
Confidence 5799999999999999999999998 999999998643
No 203
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.11 E-value=0.00055 Score=64.22 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++||||+|+||..+|.+|++.+ .+|+|||++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g-~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNG-KNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCC-CcEEEEECCc
Confidence 6899999999999999999986 8999999964
No 204
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00061 Score=64.08 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~ 93 (224)
.+.+|++|||+|.+|..+|.+|.+.+ .. ++++|+..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g-~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAG-VPDFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcC-CCcEEEEEccC
Confidence 46799999999999999999999987 55 99999985
No 205
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.10 E-value=0.00069 Score=69.60 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+|++|||+|+||+.+|..|++.+ .+|+|+|+++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G-~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAG-ARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence 4699999999999999999999986 99999998753
No 206
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.09 E-value=0.00052 Score=63.70 Aligned_cols=28 Identities=50% Similarity=0.592 Sum_probs=25.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLL 89 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlL 89 (224)
|+||||+|.|||.+|..+|+.+ .+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G-~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG-AKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEE
Confidence 8999999999999999999997 899999
No 207
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.07 E-value=0.00069 Score=62.35 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|.+|+++|..|++.+..+|.|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 5899999999999999999987679999999765
No 208
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.06 E-value=0.00059 Score=65.24 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=30.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|+||||+|.||+.+|.++++ .+|+|||++..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~---~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAP---RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCc---CCEEEEECCCC
Confidence 57999999999999999999973 59999999875
No 209
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.05 E-value=0.00065 Score=66.30 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
||+||||+|.||+.+|..+++.+ .+|+|||..+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G-~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMG-AKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCC-CCEEEEeccc
Confidence 79999999999999999999987 8999999864
No 210
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.02 E-value=0.0008 Score=61.72 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
=+++|||+|++|+++|.-|++.+ ++|.|+|+-+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G-~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG-WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCc
Confidence 46899999999999999999986 99999998764
No 211
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.00 E-value=0.00084 Score=66.27 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+..+++|||+|++|+++|..|++.+ ++|.|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G-i~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG-FDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC-CeEEEEeccc
Confidence 46799999999999999999999987 9999999975
No 212
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.97 E-value=0.00053 Score=63.42 Aligned_cols=31 Identities=39% Similarity=0.599 Sum_probs=28.6
Q ss_pred EEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 63 IVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 63 IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
||||+|++|+++|.+|++.+ .+|+|||+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G-~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG-LSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC-CcEEEEecCcc
Confidence 69999999999999999987 89999999764
No 213
>KOG0685|consensus
Probab=96.92 E-value=0.001 Score=62.72 Aligned_cols=38 Identities=37% Similarity=0.471 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
...-+||||+|.||..+|.||-|++...|+++|+..+-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 45689999999999999999999888899999998653
No 214
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.89 E-value=0.0011 Score=62.23 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|++|||+|.+|+.+|..|++.+ .+|+|+|..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G-~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG-VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC-CcEEEEecccc
Confidence 7999999999999999999987 99999997554
No 215
>KOG2665|consensus
Probab=96.89 E-value=0.00076 Score=61.08 Aligned_cols=38 Identities=42% Similarity=0.636 Sum_probs=33.8
Q ss_pred CCcccEEEECCChHHHHHHHHHh-cCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLS-ENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLa-e~~~~~VLlLEaG~~ 94 (224)
.+.||.||||+|.-|+..|.+|+ ++|.++|+|||+-..
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 46799999999999999999998 467899999999754
No 216
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.88 E-value=0.0012 Score=67.89 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..+|++|||||+||..+|..|++.+ .+|+|+|+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G-~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG-HPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeccc
Confidence 4589999999999999999999987 8999999864
No 217
>PRK12831 putative oxidoreductase; Provisional
Probab=96.88 E-value=0.0013 Score=62.16 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...|++|||+|+||+.+|.+|++.+ .+|+|+|+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G-~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMG-YDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC-CeEEEEecCC
Confidence 5689999999999999999999987 8999999854
No 218
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.84 E-value=0.0015 Score=61.60 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=30.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~ 96 (224)
.++||+||+|.|..-|++|..||..| +|||.|++.....
T Consensus 2 ~~~yDviI~GTGl~esila~als~~G-kkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSG-KKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhcC-CEEEecCCCCCcC
Confidence 47899999999999999999999997 8999999987653
No 219
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.83 E-value=0.0015 Score=61.64 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+|++|||+|++|..+|..|++.+ .+|+|+|+.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G-~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG-HKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence 4689999999999999999999987 89999998754
No 220
>KOG2820|consensus
Probab=96.81 E-value=0.0011 Score=60.24 Aligned_cols=37 Identities=35% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+..|+||||+|.-|+.+|..|+.++ .++|+||+=+.
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g-~killLeqf~~ 41 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRG-DKILLLEQFPL 41 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcC-CeEEEEeccCC
Confidence 36799999999999999999999998 89999999764
No 221
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.80 E-value=0.0028 Score=45.08 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=31.2
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~ 96 (224)
++|||+|..|+-+|..|++.+ .+|.|||+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~g-~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELG-KEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTT-SEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhC-cEEEEEeccchhh
Confidence 689999999999999999987 8999999998754
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.78 E-value=0.0017 Score=61.03 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..+|++|||+|++|+.+|..|++.+ .+|+|+|+.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G-~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAG-HSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence 4689999999999999999999986 8999999864
No 223
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.74 E-value=0.0013 Score=64.19 Aligned_cols=31 Identities=39% Similarity=0.514 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+||||+|.||+.+|.++++.+ .+|+|||++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G-~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG-YHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC-CCEEEEEecC
Confidence 589999999999999999987 8999999987
No 224
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.73 E-value=0.0013 Score=62.00 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHhcCC--CCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENP--NWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~--~~~VLlLEaG~~~ 95 (224)
|+||||+|+||.++|..|+... .++|+|||.....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 7999999999999999999853 3799999998654
No 225
>PLN02612 phytoene desaturase
Probab=96.69 E-value=0.0023 Score=62.05 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...+++|||+|.+|+++|.+|++.+ .+|+|+|+..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g-~~~~~~e~~~ 126 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAG-HKPILLEARD 126 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC-CeEEEEecCC
Confidence 4589999999999999999999987 8999999964
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.69 E-value=0.0021 Score=60.59 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
|+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g-~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLG-ADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEEccC
Confidence 7999999999999999999986 8999999865
No 227
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0018 Score=61.45 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=30.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|+|+|.||+.+|..|++.| .+|.|+|++..
T Consensus 3 Vai~GaG~AgL~~a~~La~~g-~~vt~~ea~~~ 34 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAG-YDVTLYEARDR 34 (485)
T ss_pred EEEEcccHHHHHHHHHHHhCC-CceEEEeccCc
Confidence 789999999999999999998 99999999865
No 228
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.66 E-value=0.0024 Score=59.85 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|++|+.+|..|++.+ .+|+|+|+.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g-~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKG-YDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCC
Confidence 4589999999999999999999987 89999998754
No 229
>KOG0405|consensus
Probab=96.65 E-value=0.002 Score=59.08 Aligned_cols=35 Identities=37% Similarity=0.624 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.++|||.|||+|++|...|+|-++.+ .||.|+|+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~G-Akv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHG-AKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcC-ceEEEEecC
Confidence 35899999999999999999999987 899999998
No 230
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0024 Score=58.16 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+||++|||+|.||.+.|.+|.+.| +++.+|-.|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G-k~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG-KRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC-CcEEEEeCChh
Confidence 699999999999999999999998 89999999975
No 231
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.61 E-value=0.0025 Score=60.35 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+++|||+|.+|+.+|.+|++.+ .+|+|+|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G-~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG-HEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CcEEEEEecCC
Confidence 4799999999999999999987 89999999654
No 232
>PLN02529 lysine-specific histone demethylase 1
Probab=96.60 E-value=0.0025 Score=63.65 Aligned_cols=36 Identities=36% Similarity=0.477 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...|+||||+|.+|+.+|..|++.+ .+|+|||+...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g-~~v~v~E~~~~ 194 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFG-FKVVVLEGRNR 194 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC-CcEEEEecCcc
Confidence 5689999999999999999999987 89999999643
No 233
>KOG2614|consensus
Probab=96.60 E-value=0.0025 Score=59.17 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-++||||||.+|++.|.-|++.+ ++|+|+|.-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G-~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG-IDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC-CeEEEEeecc
Confidence 468999999999999999999987 9999999944
No 234
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.56 E-value=0.0029 Score=59.80 Aligned_cols=37 Identities=30% Similarity=0.692 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~ 94 (224)
++||+|+||+|..|++++.-|.+ .|.++|.|+|+-..
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~ 39 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDS 39 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCc
Confidence 57999999999999999999998 67899999999764
No 235
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.51 E-value=0.0029 Score=63.68 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...++||||+|.+|+.+|.+|++.+ .+|+|+|+...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g-~~v~v~E~~~r 272 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG-FKVVVLEGRAR 272 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecccc
Confidence 5689999999999999999999986 89999999653
No 236
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.47 E-value=0.0036 Score=61.54 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|+||+.+|..|++.+ .+|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G-~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG-VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 4579999999999999999999987 89999998753
No 237
>KOG1399|consensus
Probab=96.47 E-value=0.003 Score=59.72 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.-+++|||+|+||+++|..|.+.+ ..|.++|+..+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g-~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG-HEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC-CCceEEEecCCc
Confidence 578999999999999999999986 999999998753
No 238
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.46 E-value=0.0035 Score=62.56 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...|++|||||+||+.+|..|++.+ .+|+|+|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G-~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRG-YDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 4679999999999999999999987 8999999843
No 239
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.44 E-value=0.0034 Score=64.78 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||||+||+.+|..|++.+ .+|+|+|++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Confidence 3579999999999999999999987 89999999753
No 240
>KOG4716|consensus
Probab=96.40 E-value=0.003 Score=57.76 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+||.||||+|++|+..|.+.+..+ .+|++|+.=.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G-~kV~~lDfV~ 52 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLG-AKVACLDFVK 52 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcC-CcEEEEeecc
Confidence 4799999999999999999999987 8999999753
No 241
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.36 E-value=0.0044 Score=58.47 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=29.7
Q ss_pred EEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
++|||+|.+|+.+|.+|.+. |+..|.|+|++.+
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r 36 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 79999999999999999985 4689999999854
No 242
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.36 E-value=0.0026 Score=59.13 Aligned_cols=30 Identities=43% Similarity=0.499 Sum_probs=27.9
Q ss_pred EECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 64 VVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 64 VVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|||+|.+|+.+|.+++|.+ .+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~G-a~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAG-ASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCC-CcEEEEeCCCC
Confidence 7999999999999999997 89999999763
No 243
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.32 E-value=0.0041 Score=62.35 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
+++|||+|+||+++|..|++.+ +++|+|||+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 6899999999999999999872 599999998764
No 244
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.32 E-value=0.0045 Score=63.67 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...+++|||+|+||..+|..|++.+ .+|+|+|+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G-~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAG-HPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CeEEEEeccc
Confidence 4579999999999999999999987 8999999865
No 245
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.26 E-value=0.0049 Score=63.23 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...+++|||||+||+.+|..|++.+ .+|+|+|+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G-~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEG-FPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCC
Confidence 3578999999999999999999987 8999999864
No 246
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.23 E-value=0.0067 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
...+++|||+|++|+.+|.+|++.+ .+|.|+|+.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG-YEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCCC
Confidence 3469999999999999999999986 899999998653
No 247
>KOG2960|consensus
Probab=96.21 E-value=0.0015 Score=56.39 Aligned_cols=35 Identities=37% Similarity=0.626 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHh-cCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLS-ENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLa-e~~~~~VLlLEaG 92 (224)
.+-|+||||+|.+|+.+|+..+ .+|+++|.+||+.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 4679999999999999999999 5789999999984
No 248
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.21 E-value=0.0061 Score=60.01 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|++|+.+|..|++.+ .+|+|+|+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G-~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG-HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence 4579999999999999999999987 89999998754
No 249
>PLN02487 zeta-carotene desaturase
Probab=96.21 E-value=0.0061 Score=59.25 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+++|||+|.+|+.+|.+|++.+ .+|+|+|+.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g-~~v~i~E~~~~ 109 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRPF 109 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CeeEEEecCCC
Confidence 469999999999999999999987 89999999664
No 250
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.0058 Score=58.83 Aligned_cols=36 Identities=42% Similarity=0.481 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.||+||||+|-||+-+|...|+-+ .++|||--..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG-~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMG-AKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccC-CeEEEEEcCCC
Confidence 4699999999999999999999987 89999876543
No 251
>PLN03000 amine oxidase
Probab=96.02 E-value=0.0083 Score=60.88 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...|+||||+|.+|+.+|.+|.+.+ .+|+|||+..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G-~~V~VlE~~~r 218 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFG-FKVTVLEGRKR 218 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCC-CcEEEEEccCc
Confidence 4689999999999999999999986 89999999765
No 252
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.01 E-value=0.01 Score=56.74 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~~ 95 (224)
....++|||||+||+.+|..|++ ..+.+|.|+|+-+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 45789999999999999999986 234899999998753
No 253
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.99 E-value=0.0087 Score=58.16 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~~ 94 (224)
.-+++|||||.||+++|.+|++++ +.+|.|||+...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 468999999999999999999963 479999999653
No 254
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.97 E-value=0.0099 Score=56.18 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|++|+.+|..|++.+ .+|+++|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G-~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG-VQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence 4589999999999999999999986 89999998753
No 255
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.93 E-value=0.0095 Score=57.44 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-++|||+|++|+++|..|.|.+ ..|.++|+..+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g-~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEG-LEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHCC-CCCeEEecCCC
Confidence 3799999999999999999987 99999999764
No 256
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.91 E-value=0.01 Score=56.35 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+++|||+|++|+.+|..|++.+ .+|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAG-HTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence 479999999999999999999986 89999998764
No 257
>PLN02976 amine oxidase
Probab=95.90 E-value=0.0096 Score=63.21 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..+|++|||+|++|+.+|.+|++.+ .+|+|||+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G-~~V~VlEa~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQG-FSVTVLEARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCC-CcEEEEeecc
Confidence 4589999999999999999999986 8999999853
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.88 E-value=0.01 Score=56.53 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.=+++|||+|.||..+|..|++.| .+|.|+|.-+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G-~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMG-FKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcC-CeEEEEecCCc
Confidence 457999999999999999999998 99999999764
No 259
>KOG1335|consensus
Probab=95.77 E-value=0.01 Score=55.17 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=31.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
.+||+||||+|++|-++|.+-++.+ ++...+|.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG-lkTacvEk 70 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG-LKTACVEK 70 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc-ceeEEEec
Confidence 4799999999999999999999997 99999998
No 260
>KOG0042|consensus
Probab=95.72 E-value=0.0046 Score=59.39 Aligned_cols=38 Identities=32% Similarity=0.542 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
..+||++|||||+.|+-+|.--+-.| +||.|+|+|..-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRG-LktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRG-LKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhccc-ceeEEEeccccc
Confidence 35699999999999999999888877 999999999753
No 261
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.70 E-value=0.013 Score=57.59 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|++|+.+|..|++.+ .+|+++|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G-~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG-VQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 3688999999999999999999987 79999999874
No 262
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.69 E-value=0.013 Score=54.37 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~ 94 (224)
.+||||+|+||..+|.+|.+.+ +.+|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 4899999999999999998853 469999999875
No 263
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.68 E-value=0.011 Score=56.25 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
|++|||||.||+++|..|++. .+|+||-+++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCC
Confidence 999999999999999999985 899999998754
No 264
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.55 E-value=0.02 Score=51.70 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHhcC--CCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~~ 95 (224)
.+||||+|+||..+|.+|.++ ++.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 379999999999999999643 45899999988653
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.54 E-value=0.018 Score=52.87 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGHE 95 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~~ 95 (224)
..++||||+|+||..+|.+|.+.+ +.+|+|+++....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 357999999999999999999864 3589999988653
No 266
>KOG4254|consensus
Probab=95.51 E-value=0.012 Score=55.58 Aligned_cols=37 Identities=35% Similarity=0.440 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+||.||||+|..|+++|..|++-+ .+|.|+|+-..
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g-~~V~vlerrhv 48 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYG-QSVAVLERRHV 48 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcC-cceEEEEEeee
Confidence 46899999999999999999999986 89999999743
No 267
>PRK13984 putative oxidoreductase; Provisional
Probab=95.43 E-value=0.02 Score=55.63 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...+++|||+|++|..+|..|.+.+ .+|.|+|+.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G-~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMG-YEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 4678999999999999999999987 89999998763
No 268
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.43 E-value=0.021 Score=53.38 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~ 95 (224)
.+||||+|+||..+|.+|.+. ++.+|+|+|+....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 589999999999999999874 45799999999753
No 269
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.42 E-value=0.016 Score=59.41 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
....++|||+|+||..+|..|+..| .+|.|+|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~G-h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSG-HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC-CeEEEEccc
Confidence 4578999999999999999999987 899999984
No 270
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.40 E-value=0.011 Score=53.77 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=27.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.||+|+||.|++++.+|..|.|.+..+++.||+-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 599999999999999999999987799999998764
No 271
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.32 E-value=0.023 Score=54.46 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
..-+.|||||+||+.+|.+|....+.+|.|+|+-+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4569999999999999999875435899999998754
No 272
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.25 E-value=0.021 Score=53.89 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=36.0
Q ss_pred cCCcccEEEECCChHHHHHHHHHhcC----CCCeEEEeecCCCCC
Q psy7388 56 LLMEYDFIVVGGGSAGNVVANRLSEN----PNWKVLLLEAGGHET 96 (224)
Q Consensus 56 ~~~~yD~IVVGsG~aG~v~A~rLae~----~~~~VLlLEaG~~~~ 96 (224)
+...||+||||+|++|...|.+|+.+ +..+|++||.|.+..
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~ 59 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE 59 (486)
T ss_pred hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence 45689999999999999999999975 468999999998743
No 273
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.25 E-value=0.023 Score=54.80 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..-+++|||+|++|+.+|..|++.+ .+|+|+|+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G-~~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMG-HAVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 4568999999999999999999987 7999999754
No 274
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.19 E-value=0.028 Score=52.31 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
+..++||||+|.||..+|.+|... +.+|+|||.-+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 467999999999999999999754 4899999987653
No 275
>KOG2853|consensus
Probab=95.19 E-value=0.021 Score=52.53 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=34.1
Q ss_pred hcCCcccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCCC
Q psy7388 55 KLLMEYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGHE 95 (224)
Q Consensus 55 ~~~~~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~~ 95 (224)
....+.|++|||+|-.|+.+|.-|-| +.+.+|+|+|+-.-.
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 34568999999999999999988766 445999999998644
No 276
>PRK09897 hypothetical protein; Provisional
Probab=95.13 E-value=0.027 Score=54.41 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~ 93 (224)
.+++|||+|++|..+|.+|.+.. ..+|.|+|.+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 47999999999999999998743 37999999854
No 277
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.93 E-value=0.042 Score=50.03 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~ 94 (224)
.|+||||+|+||..+|.+|.+ .++.+|.||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 489999999999999999987 34578999987653
No 278
>KOG2311|consensus
Probab=94.44 E-value=0.037 Score=52.83 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=27.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
...||+||||+|-|||-+|..-|+-| -+.|||--
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~G-a~TlLlT~ 59 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLG-ARTLLLTH 59 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcC-CceEEeec
Confidence 46899999999999999999888877 56666543
No 279
>KOG3851|consensus
Probab=94.41 E-value=0.037 Score=50.46 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
..+|.++|||+|++|+.+|+++.++ +.-+|.+||--.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4689999999999999999999984 4468999997664
No 280
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.27 E-value=0.054 Score=43.47 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=26.9
Q ss_pred EEECCChHHHHHHHHHhcCC----CCeEEEeecCC
Q psy7388 63 IVVGGGSAGNVVANRLSENP----NWKVLLLEAGG 93 (224)
Q Consensus 63 IVVGsG~aG~v~A~rLae~~----~~~VLlLEaG~ 93 (224)
.|||+|++|..++.+|.+.. ..+|.|+|..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 49999999999999999873 58899999843
No 281
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.85 E-value=0.072 Score=49.81 Aligned_cols=37 Identities=35% Similarity=0.601 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCC------------CCeEEEeecCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENP------------NWKVLLLEAGGHE 95 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~------------~~~VLlLEaG~~~ 95 (224)
.-+++|||+|+.|.-+|..|++.- +.+|.|+|+|+.-
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 468999999999999999998821 2499999999863
No 282
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.79 E-value=0.083 Score=45.31 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+||||+|.-|..+|..|++.+ ..|+++|.-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC-CceEEEEcCHH
Confidence 5899999999999999999997 79999998764
No 283
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.64 E-value=0.1 Score=41.05 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|+|+|..|+.+|.+|++.+ .+|.++-+++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCC-CceEEEEccc
Confidence 479999999999999999976 8999998887
No 284
>KOG1276|consensus
Probab=93.62 E-value=0.1 Score=49.13 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~ 94 (224)
..-+++|||+|.+|+.+|..|+.. ++..|.|.|++++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 457899999999999999999985 4567888999875
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.50 E-value=0.1 Score=46.78 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=32.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
-+++|||+|..|+.+|..|.+.+ .+|.++|+.+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G-~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRG-KKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC-CeEEEEEccccc
Confidence 69999999999999999999998 999999999864
No 286
>KOG4405|consensus
Probab=93.41 E-value=0.084 Score=49.50 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=34.9
Q ss_pred cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
+.++||+||||.|.-=+++|..-++.| .+||-|+.-+.+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG-~sVLHlDsn~yY 43 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSG-SSVLHLDSNEYY 43 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcC-CceEeccCcccc
Confidence 457899999999999999999999987 899999987643
No 287
>KOG1439|consensus
Probab=93.31 E-value=0.051 Score=50.57 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++||+||+|.|--=|+++.+|+-++ .+||.+++-+..
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~g-kkVLhiDrN~yY 39 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDG-KKVLHIDRNDYY 39 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecC-cEEEEEeCCCCC
Confidence 35799999999999999999999987 889999997654
No 288
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.05 Score=50.16 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=28.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
++.||++|||+|+||..+|-.-++++-+.=++-|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer 243 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER 243 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh
Confidence 46799999999999999999999987333455565
No 289
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.02 E-value=0.12 Score=48.25 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGHET 96 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~~~ 96 (224)
--+||||||.+|..+|.+|..+. +.+|.|||+-....
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 35899999999999999999974 58899999987643
No 290
>KOG1800|consensus
Probab=92.78 E-value=0.16 Score=47.27 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHET 96 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~~ 96 (224)
..-++|||||+||.-.|.+|-.+ ++.+|-+.|.-+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 45899999999999999999884 679999999987643
No 291
>KOG2755|consensus
Probab=92.49 E-value=0.1 Score=46.41 Aligned_cols=34 Identities=44% Similarity=0.761 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~ 94 (224)
.|||||+|.||...|..|+. .|+-.||||-+.+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 38999999999999999997 45678999998763
No 292
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.12 Score=47.38 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
--+.|||+|-||+-+|+++++.| .+|.|-|.-+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~G-v~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRG-VPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcC-CcEEEEEcccc
Confidence 35789999999999999999997 99999998764
No 293
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.44 E-value=0.19 Score=46.13 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
-.++|||+|..|+-+|..|++.+ .+|.|||+++..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRR-CKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCcc
Confidence 36999999999999999999886 899999998753
No 294
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.40 E-value=0.14 Score=48.72 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.-.+-|||||+||+.+|..|+..+ .+|++.|+=+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G-~~Vtv~e~~~~ 157 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG-HDVTVFERVAL 157 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC-CeEEEeCCcCC
Confidence 378999999999999999999997 89999988653
No 295
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.2 Score=46.34 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
..||+||+|.|.-=|+++.+|+-++ .+||+|++-...
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~-k~VlhiD~Nd~Y 41 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDG-KNVLHIDKNDYY 41 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcC-ceEEEEeCCCcc
Confidence 3699999999999999999999986 899999997654
No 296
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.24 E-value=0.13 Score=47.34 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.-++-|||+|.+|+.+|.-|+.. -+|.|.||+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~r 41 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRR 41 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEecccc
Confidence 46889999999999999999985 58999999875
No 297
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.01 E-value=0.21 Score=46.94 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|.+|+-+|..|++.+ .+|.|||+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g-~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFG-VEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEEecCc
Confidence 36899999999999999999986 89999999875
No 298
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.96 E-value=0.23 Score=39.92 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|+|+|..|..+|.-|++++ .+|.|..+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 579999999999999999998 8999987643
No 299
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.80 E-value=0.23 Score=46.29 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-+++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLG-SKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCC
Confidence 47999999999999999999986 89999999875
No 300
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=91.76 E-value=0.26 Score=44.84 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g-~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAG-KAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CeEEEEecCCc
Confidence 46899999999999999999886 89999999875
No 301
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=91.61 E-value=0.27 Score=46.13 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~~~~~l 205 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLG-TKVTIVEMAPQL 205 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCc
Confidence 6999999999999999999876 899999998753
No 302
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.58 E-value=0.27 Score=45.73 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g-~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLG-SKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCcc
Confidence 5999999999999999999976 899999998743
No 303
>KOG2844|consensus
Probab=91.49 E-value=0.22 Score=49.33 Aligned_cols=37 Identities=38% Similarity=0.524 Sum_probs=30.7
Q ss_pred cCCcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCC
Q psy7388 56 LLMEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGG 93 (224)
Q Consensus 56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~ 93 (224)
+....|++|||+|.+||.+|..|+..+ .| ++++|+-.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g-~k~avlle~~~ 73 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRG-MKGAVLLERSR 73 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHcc-ccceEEEeeee
Confidence 346799999999999999999999987 56 66666643
No 304
>KOG2404|consensus
Probab=91.48 E-value=0.2 Score=45.91 Aligned_cols=32 Identities=38% Similarity=0.583 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-+||||+|.||+.++++|-..+ -.|+|||.-.
T Consensus 11 pvvVIGgGLAGLsasn~iin~g-g~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKG-GIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcC-CeEEEEeccC
Confidence 6999999999999999999987 4599999754
No 305
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.24 E-value=0.4 Score=35.85 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
|||+|.|..|-.+|..|.+. +.+|+++|.-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcH
Confidence 69999999999999999995 479999998864
No 306
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.98 E-value=0.32 Score=45.94 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|||+|..|+-+|..|++.+ .+|.|||+++..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G-~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLG-SEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCC
Confidence 6899999999999999999987 899999998753
No 307
>KOG2495|consensus
Probab=90.97 E-value=0.11 Score=48.89 Aligned_cols=37 Identities=41% Similarity=0.647 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhc-------------CCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSE-------------NPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae-------------~~~~~VLlLEaG~~ 94 (224)
.---++|||||+.|.-.|.+|+. ....+|.||||.+.
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 34679999999999999999987 23479999999984
No 308
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.94 E-value=0.32 Score=43.41 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|.-|+.+|.+|++.+ .+|.++.++.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAG-LPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCC-CCeEEEEech
Confidence 5899999999999999999987 7899999975
No 309
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.87 E-value=0.4 Score=39.08 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=27.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.-.++|||+|.++.-+|..|++.+ .+|.++=+.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTC-SEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhC-CEEEEEecCC
Confidence 357999999999999999999997 8999987765
No 310
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=90.85 E-value=0.34 Score=45.51 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLG-SETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Confidence 6899999999999999999986 89999999875
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.79 E-value=0.36 Score=49.27 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcC---CCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG~~~ 95 (224)
.+||||+|+||..+|.+|.+. .+.+|.|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 699999999999999999763 34799999998764
No 312
>PRK07846 mycothione reductase; Reviewed
Probab=90.75 E-value=0.36 Score=45.34 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
-.++|||+|..|+-+|..|++.+ .+|.|||+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G-~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALG-VRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCcc
Confidence 47899999999999999999986 899999998753
No 313
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=90.68 E-value=0.35 Score=45.26 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g-~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLG-SEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCc
Confidence 46899999999999999999986 79999999864
No 314
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.51 E-value=0.34 Score=48.88 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHhcC--CCCeEEEeecCCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGHE 95 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~~ 95 (224)
+||||+|+||..+|.+|.+. .+.+|.|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999998764 34799999998764
No 315
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.30 E-value=0.45 Score=39.29 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+-|||+|..|.-+|..++..| .+|.|++.-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence 579999999999999999997 99999998653
No 316
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.26 E-value=0.35 Score=46.02 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCC--CCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENP--NWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~--~~~VLlLEaG~~ 94 (224)
++++|||+|++|..+|..|...+ ..+|-|+|.-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 78999999999999999999853 234899987653
No 317
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.17 E-value=0.44 Score=42.46 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|.-|+.+|.+|++.+ ..|.++-++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 5899999999999999999987 7999998875
No 318
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.06 E-value=0.46 Score=44.78 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
=.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G-~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLG-AQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 35899999999999999999987 899999998753
No 319
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.97 E-value=0.46 Score=44.44 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g-~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLG-AEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCCc
Confidence 5899999999999999999886 899999998753
No 320
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.88 E-value=0.47 Score=43.86 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERG-KNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-CcEEEEECCcc
Confidence 47899999999999999999876 79999999875
No 321
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=89.86 E-value=0.47 Score=44.28 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.|||+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g-~~Vtli~~~~~ 209 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALG-VKVTLINTRDR 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence 35899999999999999999987 89999999875
No 322
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=89.83 E-value=0.45 Score=44.42 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g-~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERG-LHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CcEEEEecccc
Confidence 6899999999999999999986 89999999864
No 323
>PRK06370 mercuric reductase; Validated
Probab=89.82 E-value=0.47 Score=44.47 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
-.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G-~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFG-SEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCCC
Confidence 36799999999999999999986 799999998753
No 324
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.82 E-value=0.47 Score=44.56 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G-~~Vtlv~~~~~ 206 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYG-VDVTIVEFLDR 206 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence 6899999999999999999986 79999999864
No 325
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.75 E-value=0.46 Score=44.52 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.+.+|+|.||-|++-+.+|.-|.|....++|.||+-+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 357999999999999999999999887899999998854
No 326
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.56 E-value=0.52 Score=41.21 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
+.|||+|..|+.+|.+|++.+ .+|.++.+
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 789999999999999999987 78999987
No 327
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.32 E-value=0.51 Score=41.38 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
+.|||+|..|+.+|..|++++ .+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g-~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAG-RDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCC-CceEEEec
Confidence 689999999999999999986 78999888
No 328
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=89.22 E-value=0.64 Score=44.15 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~ 96 (224)
-.+|||+|..|+-+|.-++.-| .+|.|||+++...
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG-~~VTiie~~~~iL 209 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALG-SKVTVVERGDRIL 209 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCCC
Confidence 3899999999999999999987 8999999998643
No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=89.22 E-value=0.57 Score=43.74 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g-~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLG-VKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Confidence 36899999999999999999986 89999999875
No 330
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.80 E-value=0.62 Score=43.54 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G-~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLG-VQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-CeEEEEEeCCC
Confidence 4899999999999999999886 89999999975
No 331
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=88.55 E-value=0.66 Score=43.56 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.|||.++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G-~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALG-TRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-CcEEEEEccCc
Confidence 47899999999999999999986 89999999875
No 332
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=88.20 E-value=0.73 Score=43.46 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g-~~Vtli~~~~~~ 218 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLG-AEVTILEALPAF 218 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCCcc
Confidence 6899999999999999999886 899999998753
No 333
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=88.16 E-value=0.72 Score=42.74 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|.+.+ .+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g-~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLG-KNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CcEEEEeCCcc
Confidence 46899999999999999999876 79999999874
No 334
>PRK06116 glutathione reductase; Validated
Probab=88.09 E-value=0.76 Score=42.86 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLG-SETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence 36899999999999999999986 89999999875
No 335
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.04 E-value=0.7 Score=44.19 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g-~~Vtli~~~~~ 386 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIV-RHVTVLEFADE 386 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcC-cEEEEEEeCCc
Confidence 7999999999999999999876 79999998764
No 336
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=87.81 E-value=0.77 Score=39.46 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|.-+|..|++.+ .+|.++++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~-~~V~~v~~~~~ 175 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIA-KKVTLVHRRDK 175 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhc-CEEEEEEeCcc
Confidence 37899999999999999999875 89999999874
No 337
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.79 E-value=0.72 Score=41.06 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|.-|+.+|..|++++ .+|.+.++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G-~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAG-HEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCC-CeeEEEeCCH
Confidence 4789999999999999999987 7999998865
No 338
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.77 E-value=0.82 Score=43.06 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g-~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELG-VKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCc
Confidence 5899999999999999999986 89999999875
No 339
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.64 E-value=0.81 Score=42.53 Aligned_cols=34 Identities=44% Similarity=0.704 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcC-------------CCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSEN-------------PNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~-------------~~~~VLlLEaG~~ 94 (224)
.++|||+|..|.-+|..|++. .+.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 789999999999999999861 2479999999975
No 340
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.49 E-value=0.78 Score=44.35 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g-~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYA-SKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccC-CEEEEEEeCCc
Confidence 6899999999999999999876 89999999875
No 341
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=87.38 E-value=0.83 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|||+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G-~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALG-SEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCC-CeEEEEeccCc
Confidence 6899999999999999999987 79999999875
No 342
>PLN02507 glutathione reductase
Probab=87.37 E-value=0.84 Score=43.57 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G-~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMG-ATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-CeEEEEEecCC
Confidence 6899999999999999999986 89999999874
No 343
>PRK13748 putative mercuric reductase; Provisional
Probab=87.31 E-value=0.84 Score=43.76 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|||+|..|+-+|..|++.+ .+|.|||++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g-~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLG-SKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CEEEEEecCc
Confidence 5899999999999999999986 8999999864
No 344
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.28 E-value=0.86 Score=42.49 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+++|||+|.-|.++|..|++++..+|++..+-.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 589999999999999999999878899988874
No 345
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.09 E-value=0.85 Score=43.58 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
+++|||+|..|.-+|..|+..+ .+|.|+++++..
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~-~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIV-KHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CEEEEEEECccc
Confidence 7999999999999999999876 899999998753
No 346
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.96 E-value=0.91 Score=40.55 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
+.|||+|.-|+.+|..|++++ .+|.++.+-
T Consensus 3 I~IiGaGa~G~ala~~L~~~g-~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKK-ISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence 689999999999999999987 789999874
No 347
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=86.91 E-value=1 Score=41.92 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g-~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFG-SKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCCC
Confidence 6899999999999999999986 899999998753
No 348
>PRK10262 thioredoxin reductase; Provisional
Probab=86.88 E-value=0.96 Score=40.06 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~-~~Vtlv~~~~~ 180 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIA-SEVHLIHRRDG 180 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhC-CEEEEEEECCc
Confidence 6899999999999999999986 79999999864
No 349
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.73 E-value=0.72 Score=40.87 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 69 SAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 69 ~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.||+++|.+|++.+ .+|+|||+..+.
T Consensus 1 iaGL~aA~~L~~~G-~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAKAG-YDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHHTT-TEEEEEESSSSS
T ss_pred ChHHHHHHHHHhCC-CCEEEEEcCCCC
Confidence 38999999999997 899999998653
No 350
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.64 E-value=1 Score=39.62 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-+.|||+|..|..+|..|++++ .+|.+++.-+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 3789999999999999999987 7999998754
No 351
>PLN02546 glutathione reductase
Probab=86.23 E-value=1 Score=43.77 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
=.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g-~~Vtlv~~~~~ 286 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLK-SDVHVFIRQKK 286 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CeEEEEEeccc
Confidence 36899999999999999999876 79999999874
No 352
>PRK14694 putative mercuric reductase; Provisional
Probab=86.22 E-value=1.1 Score=42.15 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|||+|..|+-+|..|++.+ .+|.|++.+.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g-~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLG-SRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CeEEEEECCC
Confidence 5899999999999999999986 8999999764
No 353
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.22 E-value=1 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|||+|.-|..+|..|++++ .+|.+.+.-+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCC-CcEEEEeCCH
Confidence 689999999999999999987 8999998764
No 354
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=85.89 E-value=1 Score=45.44 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|.++.
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G-~~Vtvv~~~~~ 174 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLG-MDVSVIHHAPG 174 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CeEEEEccCCc
Confidence 5899999999999999999987 89999999875
No 355
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.66 E-value=1.2 Score=41.91 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-.++|||+|.+|..+|.-|.+.+ .+|.++|...
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 36899999999999999999887 8999999764
No 356
>PRK14727 putative mercuric reductase; Provisional
Probab=85.49 E-value=1.2 Score=42.11 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|||+|..|+-+|..|++.+ .+|.|+++..
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G-~~Vtlv~~~~ 221 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLG-SRVTILARST 221 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CEEEEEEcCC
Confidence 5899999999999999999886 8999999863
No 357
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.48 E-value=1.3 Score=34.46 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~ 95 (224)
.-++|||.|.-|+.+|..|+..|-.++.+++-..-.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 347999999999999999999886689999877643
No 358
>PTZ00058 glutathione reductase; Provisional
Probab=85.47 E-value=1.1 Score=43.62 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
=.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G-~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLG-AESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CcEEEEEeccc
Confidence 36899999999999999999987 89999999874
No 359
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.44 E-value=1.4 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL 89 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlL 89 (224)
.--++|||+|..|.-.|..|.+.+ .+|.||
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g-a~V~VI 42 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG-AFVTVV 42 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 456899999999999999999986 799998
No 360
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=85.26 E-value=1.2 Score=39.80 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|.-|+.+|.+|++++ .+|.++.+.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEecHH
Confidence 3789999999999999999987 7999998864
No 361
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.91 E-value=1.3 Score=41.24 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-.++|||+|..|..+|.+|++.| .+|.+.+...
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG-AKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 45899999999999999999998 8999999864
No 362
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.74 E-value=1.7 Score=34.01 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|||.|.-|+.+|..|+..|-.++.+++...-
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 689999999999999999998567999987754
No 363
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=84.55 E-value=1.4 Score=42.08 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHh---cCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLS---ENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLa---e~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|+ +.+ .+|.|||+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G-~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRG-GKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCC-CeEEEEecCCc
Confidence 5899999999999997554 334 79999999975
No 364
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=84.55 E-value=1.3 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|+-+|..|++.+ .+|.|+|.++.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G-~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLG-VETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 5799999999999999999987 89999999875
No 365
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.51 E-value=1.4 Score=39.36 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-+.|||+|.-|..+|.+|++++ .+|.+..+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKG-VPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence 4899999999999999999987 7899998854
No 366
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.43 E-value=1.5 Score=38.57 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-+.|||+|.-|..+|..|+.++ .+|.+.++-+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence 3789999999999999999987 8999998753
No 367
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.33 E-value=1.5 Score=36.85 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=28.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
.--++|||+|..|.-.|..|.+.+ .+|.|++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 457899999999999999999987 79999964
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.05 E-value=1.6 Score=38.69 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-+-|||+|.-|+-+|..|+.++ .+|.+++.-+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG-VDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEEEECCHH
Confidence 4779999999999999999987 89999988764
No 369
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=83.96 E-value=1.6 Score=39.32 Aligned_cols=33 Identities=24% Similarity=0.081 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|||+|..|+-+|..|.+.+..+|.|+|+..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 589999999999999999887633499999865
No 370
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.83 E-value=1.4 Score=36.56 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=25.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.|||.|.-|+++|..||+.| .+|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKG-HQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTT-SEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhCC-CEEEEEeCChH
Confidence 579999999999999999998 89999988753
No 371
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.76 E-value=2.3 Score=33.25 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=29.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
+.--++|||+|-+|..++..|.+.+-.+|.|+-|-
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35679999999999999999999875559988764
No 372
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.65 E-value=1.5 Score=39.36 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.|+|+|.-|+..|.+|++.+ -.|+++=+.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH
Confidence 689999999999999999998 78888887763
No 373
>KOG0404|consensus
Probab=83.56 E-value=1.2 Score=39.01 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-.++|||||+|+-.+|..+++.. +|=||.|-+
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae-lkPllfEG~ 40 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAE-LKPLLFEGM 40 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcc-cCceEEeee
Confidence 36899999999999999999975 899999965
No 374
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.44 E-value=1.7 Score=38.19 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|||+|.-|+.+|..|+..+ .+|.+.+.-+
T Consensus 6 I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTG-YDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 789999999999999999987 7999998754
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.38 E-value=1.7 Score=39.36 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-|||+|..|+-+|..++..| .+|.+.+.-+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHG-LDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 779999999999999999987 9999998764
No 376
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.02 E-value=2.6 Score=30.20 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=28.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
.-.++|+|+|..|..+|..|.+.+..+|.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346999999999999999999985578888877
No 377
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.01 E-value=1.6 Score=32.58 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=27.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.--++|||+|..|..-+..|.+.+ -+|.|+-.-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence 467899999999999999999987 899987544
No 378
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.78 E-value=1.9 Score=39.33 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|.-|+.+|..|+..|--++.|++...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 456799999999999999999999855899998875
No 379
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.73 E-value=2 Score=37.96 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|.-|+.+|.+|++++ ..|.++.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g-~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNG-HDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CEEEEEECCH
Confidence 3789999999999999999987 7899998864
No 380
>PTZ00052 thioredoxin reductase; Provisional
Probab=82.71 E-value=1.7 Score=41.48 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.++|||+|..|+-+|..|++.+ .+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G-~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELG-FDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CcEEEEEcC
Confidence 6899999999999999999987 899999974
No 381
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.21 E-value=2.1 Score=36.73 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC--eEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNW--KVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~ 93 (224)
--++|+|+|.+|..+|..|.+.+-. +|.++++-+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4689999999999999999998744 699999874
No 382
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.17 E-value=2.2 Score=35.80 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
--++|+|.|..|..+|.+|.+.+ .+|++.+.-.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCH
Confidence 35899999999999999999987 7999887643
No 383
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=82.06 E-value=1.7 Score=40.94 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~ 96 (224)
-.++|||+|.+|.-+|..|++.+ .+|.|+=+.+...
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~g-a~vt~~qRs~~~~ 211 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVG-ASVTLSQRSPPHI 211 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcC-CeeEEEecCCCce
Confidence 57899999999999999999998 8999999987543
No 384
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=81.99 E-value=2 Score=40.26 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|.-+|..|.+.+ .+|.|++++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G-~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLG-AEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcC-CEEEEEeecCc
Confidence 6999999999999999999987 68999998864
No 385
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.96 E-value=2 Score=37.54 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|..|+.+|..|+..+ .+|.+++.-+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCH
Confidence 4789999999999999999987 7999998543
No 386
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=81.93 E-value=1.8 Score=41.16 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
.++|||+|..|+-+|..|++.+ .+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G-~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIG-LDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhC-CcEEEEEec
Confidence 5899999999999999999986 799999974
No 387
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.92 E-value=2.2 Score=37.83 Aligned_cols=32 Identities=19% Similarity=0.473 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|..|+.+|..|+..+ .+|.+++.-.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKG-LQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 3789999999999999999986 7999998643
No 388
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=81.37 E-value=2.6 Score=32.13 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=27.3
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.||| +|..|..+...|.+++..+++.|-....
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 56999 9999999999999999888666655443
No 389
>PRK04148 hypothetical protein; Provisional
Probab=81.25 E-value=1.6 Score=34.78 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
--+++||.| .|..+|..|++.+ ..|+.+|.-+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G-~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESG-FDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCC-CEEEEEECCHH
Confidence 358999999 7877899999987 89999987764
No 390
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.02 E-value=2.3 Score=39.73 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+.|||.|.+|..+|.-|.+.| .+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G-~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG-WEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC-CEEEEECCCCc
Confidence 689999999999999999987 89999998754
No 391
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.27 E-value=2.8 Score=38.22 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||+|.-|+.+|..|+..|--++.+++...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467899999999999999999999855899999875
No 392
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.26 E-value=3.2 Score=33.99 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|||.|.-|+.+|..|+..|-.++.+++...-
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 689999999999999999988556999988763
No 393
>KOG0399|consensus
Probab=79.98 E-value=2.2 Score=45.14 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.-.-+-|||||+||+.+|..|-..+ ..|.|-|+-.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~g-h~v~vyer~dr 1819 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAG-HTVTVYERSDR 1819 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcC-cEEEEEEecCC
Confidence 4578999999999999999999998 79999999754
No 394
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.97 E-value=2.9 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-+.|||+|.-|+.+|..|+..|-.+|.|++...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 457899999999999999999999844799887763
No 395
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.94 E-value=2.8 Score=36.93 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|||+|.-|+.+|..|+..+ .+|.+.+.-+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 789999999999999999986 8999998754
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.93 E-value=2.5 Score=39.12 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.++|+|+|.-|..+|.+|.+.+ ..|.++|+-+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g-~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN-NDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CcEEEEECCH
Confidence 4899999999999999999976 8999998854
No 397
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.39 E-value=2.8 Score=37.28 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.+.|||+|..|..+|.+|++++ .+|.+..+-.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANG-HRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCC-CEEEEEeCCC
Confidence 4889999999999999999987 7999988754
No 398
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.38 E-value=2.6 Score=40.74 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+-.+||+|.|.-|..+|.+|.+++ .+|+++|.-++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHH
Confidence 467899999999999999999986 89999997654
No 399
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=79.28 E-value=3 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
=.++|||+|..|.-+|..|.+.+..+|.++++...
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 36899999999999999999887458999998643
No 400
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=78.83 E-value=3.2 Score=34.77 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
..+.-++|||.|.-|+.+|..|+..|-.++.+++...-
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 35688999999999999999999998558999887753
No 401
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=78.75 E-value=2.2 Score=40.42 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|.+|+=+|..|++.. .+|.++.+++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a-~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVA-KEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhC-CeEEEEEeecc
Confidence 6999999999999999999976 79999998753
No 402
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.62 E-value=3.3 Score=36.68 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...-++|||.|..|+.+|.-|++.|-.++.|+|.-..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4678999999999999999999987568999997653
No 403
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.12 E-value=3.3 Score=38.39 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.+||+|.|.-|..+|..|.+.+ ..|+++|.-+.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~-~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEG-YSVKLIERDPE 265 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHH
Confidence 45999999999999999999976 89999987653
No 404
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=78.09 E-value=3.5 Score=36.93 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=26.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
+.|||+|.-|+.+|..|+..+..+|.|++.
T Consensus 4 V~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 689999999999999999976337999998
No 405
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=77.98 E-value=3.6 Score=35.06 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=31.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|.-|+.+|..|+..|-.++.+++...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457899999999999999999999866788887665
No 406
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.60 E-value=3.6 Score=34.69 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa 91 (224)
--++|||+|..|.--|..|.+.+ .+|.|+.-
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvsp 40 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIAE 40 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEcC
Confidence 36899999999999999999987 78998854
No 407
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=77.25 E-value=3.9 Score=34.44 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.9
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.||| +|.-|..+|.+|++++ .+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH
Confidence 67997 7999999999999987 7898887654
No 408
>PRK08328 hypothetical protein; Provisional
Probab=76.93 E-value=4 Score=35.01 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=30.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|..|+.+|..|+..|-.++.+++...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999866788886554
No 409
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=76.45 E-value=4.2 Score=36.18 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNW-KVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~ 93 (224)
+.|||+|..|..+|..|++.+-. .|.|+++-.
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 68999999999999999997633 699998754
No 410
>PRK12831 putative oxidoreductase; Provisional
Probab=76.31 E-value=3.8 Score=38.71 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|.-+|..|.+.+ .+|.|+++...
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~G-a~Vtlv~r~~~ 315 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLG-AEVHIVYRRSE 315 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-CEEEEEeecCc
Confidence 7999999999999999999987 67999998754
No 411
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=76.26 E-value=3.7 Score=39.47 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-|||+|+-|.-+|..|+.++ .+|.|.|+-+
T Consensus 8 V~VIGaG~MG~gIA~~la~aG-~~V~l~d~~~ 38 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASAG-HQVLLYDIRA 38 (503)
T ss_pred EEEECcCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 789999999999999999987 8999988764
No 412
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=76.26 E-value=4.3 Score=35.12 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...-++|||.|..|+.+|..|+..|-.++.+++....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4588999999999999999999988667888887764
No 413
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.20 E-value=4.4 Score=34.32 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|..|+.+|..|+..+-.++.+++...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467899999999999999999998855699988874
No 414
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=75.93 E-value=5.1 Score=32.88 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.0
Q ss_pred CcccEEEECCCh-HHHHHHHHHhcCCCCeEEEeecC
Q psy7388 58 MEYDFIVVGGGS-AGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 58 ~~yD~IVVGsG~-aG~v~A~rLae~~~~~VLlLEaG 92 (224)
+...++|||+|- .|..+|..|.+.+ .+|.++.+-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECC
Confidence 468899999996 6999999999987 689888864
No 415
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=75.87 E-value=4.3 Score=35.96 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-.++|||+|-+|..+|..|++.+-.+|.|+.+-.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3689999999999999999998745799987753
No 416
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.69 E-value=4.2 Score=37.47 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.-+++|||+|..|..+|..|...+ .+|.++++-.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCH
Confidence 456999999999999999999887 6899998753
No 417
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=75.52 E-value=3.8 Score=38.00 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|||.|..|+.+|..|++.+ .+|.+.+.-+
T Consensus 3 I~vIGlG~~G~~lA~~La~~G-~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLG-HEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcC-CeEEEEECCH
Confidence 679999999999999999987 7899998754
No 418
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=75.33 E-value=4.3 Score=38.79 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~ 93 (224)
.+.|||.|..|+++|..|++.+ +.+|+.+|..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 3789999999999999999975 47899998764
No 419
>PRK06223 malate dehydrogenase; Reviewed
Probab=74.51 E-value=5 Score=35.52 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-+.|||+|.-|..+|..|+..+...|.|++.-
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 47899999999999999998751289999973
No 420
>PRK08017 oxidoreductase; Provisional
Probab=74.39 E-value=5.2 Score=33.50 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=26.9
Q ss_pred EEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|+|+ |.-|..+|.+|.+.+ .+|.++.+-.
T Consensus 5 vlVtGasg~IG~~la~~l~~~g-~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRG-YRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 899998 999999999999987 7898887643
No 421
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=74.25 E-value=4.8 Score=35.77 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
--++|||.|..|..+|.+|...+ .+|.+.++-+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 46899999999999999999987 7999998764
No 422
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=74.15 E-value=7.2 Score=36.76 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=32.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCC--eEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNW--KVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~~ 94 (224)
.++--++|.|+|+||+.+|..|.+.+-. +|.++++-+.
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred ccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 3578899999999999999999986633 7999998764
No 423
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=74.13 E-value=4.7 Score=36.80 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=26.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNW-KVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~~ 94 (224)
++|+|+|..|..+|..|++.... +|+|..+-..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~ 34 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE 34 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH
Confidence 58999999999999999998766 8888877653
No 424
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=73.88 E-value=5.4 Score=34.55 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
....-++|||.|.-|+.+|..|+..|-.++.+++...-
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35689999999999999999999988567888877653
No 425
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=73.71 E-value=5.6 Score=34.22 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.6
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|.| +|..|..++.+|.+++ .+|..+.+...
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~ 35 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRD 35 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCc
Confidence 78999 5999999999999986 89999998764
No 426
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.42 E-value=4.4 Score=40.60 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-+.|||+|+.|.-+|..++..+ .+|.|+|.-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKG-VPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCC-CeEEEEeCCHH
Confidence 3789999999999999999987 99999987653
No 427
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.33 E-value=5.4 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.3
Q ss_pred cEEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
=++|+| +|.-|..+|.+|++.+ .+|+++-+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g-~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEG-YKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC-CEEEEeeCCH
Confidence 467887 4899999999999986 7899987643
No 428
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=73.31 E-value=4.9 Score=39.95 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...-++|||+|.-||.+|..|+..|=.++.+++.+.-
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence 4577999999999999999999998667999998864
No 429
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=73.16 E-value=5 Score=38.36 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-|||+|.-|..+|.+|+.++ .+|.+.++-+
T Consensus 7 IavIG~G~MG~~iA~~la~~G-~~V~v~D~~~ 37 (495)
T PRK07531 7 AACIGGGVIGGGWAARFLLAG-IDVAVFDPHP 37 (495)
T ss_pred EEEECcCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 779999999999999999987 8999998754
No 430
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=73.08 E-value=5.6 Score=35.98 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|||+|.-|+.+|..|+..|=.++.+++.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 689999999999999999988668999988864
No 431
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=73.06 E-value=4.9 Score=37.54 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|||.|..|+.+|..|++.+ .+|.+++.-+
T Consensus 6 I~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~ 36 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQ 36 (415)
T ss_pred EEEECcchhhHHHHHHHHhCC-CEEEEEeCCH
Confidence 789999999999999999987 8999998754
No 432
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=73.05 E-value=5.7 Score=35.89 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.-+.|||+|..|..+|..|+..+-.+|.|++.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45899999999999999999876347999987554
No 433
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=72.92 E-value=6.9 Score=31.83 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=27.5
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
|+|+| .|.-|..+|..|++++..+|+|+-+-+
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~ 35 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSG 35 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 78887 788999999999999888999998873
No 434
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=72.88 E-value=5.1 Score=38.53 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-|||+|.-|.-+|..|+.++ +.|.|.|+-+
T Consensus 10 V~VIGaG~MG~gIA~~la~aG-~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAG-HTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 789999999999999999987 8999987654
No 435
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.81 E-value=5.1 Score=37.20 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|+|+|..|..+|..|.+.| .+|.+.+...
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G-~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLG-ANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCC-CEEEEEcCCC
Confidence 799999999999999999987 8999998754
No 436
>KOG2403|consensus
Probab=72.77 E-value=3.4 Score=40.29 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=27.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEee
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLE 90 (224)
..||.+|||+|-||+-.|.-|+|.+ .++.++-
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g-~~~a~it 85 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELG-EKTAVIT 85 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcC-ceEEEEe
Confidence 4699999999999999999999987 6776663
No 437
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=72.73 E-value=4.7 Score=40.44 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-+.|||+|+.|+-+|..++..+ ..|.|+|.-+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKG-TPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 4899999999999999999987 9999999754
No 438
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.71 E-value=6.5 Score=31.27 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.3
Q ss_pred EEEECC-ChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGG-GSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|+|+ |..|..++..|.+.+ .+|.++=+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch
Confidence 579996 999999999999987 89999888765
No 439
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=72.70 E-value=4.8 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNW-KVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~~ 94 (224)
+.|||+|..|..+|..|+..+ . .|.|++.-+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~-l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE-LGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC-CcEEEEEeCCCc
Confidence 369999999999999999875 4 9999998753
No 440
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.45 E-value=5.8 Score=36.45 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|..|+.+|..|+..|-.++.+++...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 456899999999999999999999856799998874
No 441
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=72.26 E-value=6.1 Score=34.16 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|||+|.-|+.++..|+..|-.++.+++...-
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 689999999999999999988667888877653
No 442
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=72.14 E-value=6.3 Score=34.89 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|+|+|-+|..+|..|++.+-.+|.++.+-.
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 579999999999999999998744599987754
No 443
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=72.11 E-value=6.6 Score=32.83 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
...-++|||.|.-|+.+|..|+..|=.++.+++-..-
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4678999999999999999999998567888887753
No 444
>PRK08177 short chain dehydrogenase; Provisional
Probab=71.91 E-value=7.3 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.0
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|+| +|.-|..+|.+|++.+ .+|+++.+.+.
T Consensus 4 vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCC-CEEEEEeCCCc
Confidence 57777 6788999999999987 89999988764
No 445
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=71.58 E-value=5.3 Score=38.44 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~ 93 (224)
-++-|||||.|++++|.-|-+++ ..+|-+||.-.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~ 39 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD 39 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC
Confidence 46789999999999999999864 46899999743
No 446
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.31 E-value=5.1 Score=39.47 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+-.+||+|.|.-|..+|..|.+++ .+|.+||.-++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHH
Confidence 467999999999999999999986 89999998764
No 447
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=71.28 E-value=5.7 Score=34.75 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+.|||.|.-|..+|..|.+.+ .+|.+.++-+
T Consensus 3 I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCC-CEEEEEECCH
Confidence 679999999999999999986 7899998753
No 448
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=71.11 E-value=7.2 Score=32.61 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.+.-++|||.|.-|+.+|.-|+..|=.++.+++-..-
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4688999999999999999999988556888877653
No 449
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=71.05 E-value=6 Score=39.69 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.++|||+|..|.-+|..|.+.+..+|.|+++...
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 6899999999999999999887445999998754
No 450
>KOG2018|consensus
Probab=71.05 E-value=5 Score=36.69 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
=+||||+|--|+-+++-|.+.|-.|+.+++--.
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 378999999999999999999877899887654
No 451
>KOG3923|consensus
Probab=70.99 E-value=6.5 Score=35.71 Aligned_cols=37 Identities=27% Similarity=0.228 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHHhc------CCCCeEEEeecCCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSE------NPNWKVLLLEAGGHE 95 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae------~~~~~VLlLEaG~~~ 95 (224)
..++.|||+|..|+..|..+.+ .|..+|.+++--..+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 5689999999999999966665 355788888765543
No 452
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=70.98 E-value=6.2 Score=31.62 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=25.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-+||-|..|..+|.+|.+++ .+|.+-++-+
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d~~~ 34 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAG-YEVTVYDRSP 34 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTT-TEEEEEESSH
T ss_pred EEEEchHHHHHHHHHHHHhcC-CeEEeeccch
Confidence 568999999999999999987 8999988664
No 453
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=70.95 E-value=6.1 Score=39.06 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
=.++|||+|..|.-+|..|.+.+..+|.|+++...
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 36899999999999999999887567999988753
No 454
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=70.78 E-value=7.9 Score=30.10 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-.++|||+|..|..+|..|.+.+..+|.+..+-.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3589999999999999999987546788887653
No 455
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.69 E-value=7.1 Score=34.89 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCC-CeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~ 93 (224)
.+.|||+|..|+.+|..|++.+- ..|.|++...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37899999999999999999763 3699999754
No 456
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=70.09 E-value=6.8 Score=34.20 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCC----------CCeEEEeecCC
Q psy7388 57 LMEYDFIVVGGGSAGNVVANRLSENP----------NWKVLLLEAGG 93 (224)
Q Consensus 57 ~~~yD~IVVGsG~aG~v~A~rLae~~----------~~~VLlLEaG~ 93 (224)
.....++|||+|.-||-++..|++.+ +.++.|++...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35789999999999999999999853 13677776554
No 457
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=70.08 E-value=7 Score=34.88 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.0
Q ss_pred EEEECCChHHHHHHHHHhc-CCCCeEEEeecCCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGHE 95 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~~ 95 (224)
++|||+|.+|..+|.+|.+ .++..|.+++.....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 4899999999999998776 345678777777643
No 458
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=69.96 E-value=8.1 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=28.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
..-++|+|+|.+|.-+|.-|..-| .+|.++|.-.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCH
Confidence 478999999999999999999987 8899888654
No 459
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=69.91 E-value=7.2 Score=35.07 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=28.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCC-eEEEeecC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAG 92 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG 92 (224)
..-+.|||+|..|+.+|..|+..+-. .++|++.-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 35789999999999999999987633 68999873
No 460
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.66 E-value=7.1 Score=36.71 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.-.++|+|.|+.|..+|.+|...+ .+|.++|.-+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChh
Confidence 347899999999999999999887 69999987653
No 461
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=69.23 E-value=7.4 Score=36.99 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-++|||+|..|.-+|..+.+.+..+|.++|..+.
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 5899999999999988877776578999998764
No 462
>PRK06057 short chain dehydrogenase; Provisional
Probab=69.20 E-value=7.9 Score=32.63 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.4
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|+|+ |.-|..+|.+|++.+ .+|.++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G-~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEG-ATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 4789998 889999999999987 8999987654
No 463
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=69.16 E-value=9.8 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.3
Q ss_pred EEEECCChHHHHHHHHHhcCC--CCeEEEe-ecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENP--NWKVLLL-EAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~--~~~VLlL-EaG~ 93 (224)
+.|||+|.-|..++..|.+.+ ..+|+++ ++-+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 468899999999999999975 2577755 6554
No 464
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.06 E-value=6.7 Score=37.93 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-++|+|+|-+|..+|..|++.+ .+|.++.+-
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G-~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKG-ARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CEEEEEcCC
Confidence 4799999999999999999987 599998653
No 465
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=68.97 E-value=9.8 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=27.3
Q ss_pred EEEECC-ChHHHHHHHHHhcCCCC-eEEEeecCCC
Q psy7388 62 FIVVGG-GSAGNVVANRLSENPNW-KVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGs-G~aG~v~A~rLae~~~~-~VLlLEaG~~ 94 (224)
+.|||+ |.-|..+|..|...+-. .+.|++.-..
T Consensus 3 V~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 3 VAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 689999 99999999999987643 4888887643
No 466
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=68.75 E-value=8.4 Score=31.58 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=27.3
Q ss_pred ccEEEECC-ChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 60 YDFIVVGG-GSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 60 yD~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-.++|+|+ |..|..+|..|++.+ .+|.++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC
Confidence 46899996 999999999999987 799888654
No 467
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=68.53 E-value=8.1 Score=34.10 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=28.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-.++|||+|-++..+|..|.+.+-.+|.|+.|-
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999875578888664
No 468
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.46 E-value=6.7 Score=35.49 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLL 89 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlL 89 (224)
-.+.|||+|.-|+++|..|++++ .|.++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~ 35 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQW 35 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEE
Confidence 45899999999999999999987 34444
No 469
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=68.42 E-value=8.1 Score=33.67 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-.++|+|+|.+|..+|..|++.+ .+|.++.+-.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 35899999999999999999987 6899887653
No 470
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=68.26 E-value=7.7 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=29.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.-.++|||+|..|..+|..|.+.+..+|.++++-+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 45699999999999999999986656898888754
No 471
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.99 E-value=8.6 Score=32.33 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=26.8
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|.|+ |.-|..+|.+|++++ .+|.++.+..
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~ 44 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAG-AEVILNGRDP 44 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 4888885 899999999999987 8999886643
No 472
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.94 E-value=6.6 Score=39.60 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-+-|||+|+.|+-+|..++..| ..|.|+|.-+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G-~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKG-LKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCC-CcEEEecCCHH
Confidence 3889999999999999999986 99999987653
No 473
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=67.93 E-value=6.8 Score=34.31 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
+-|||.|..|..+|.+|++.+ .+|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G-~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAG-YQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCC-CeEEEEcCCH
Confidence 568999999999999999987 7999988764
No 474
>PRK07774 short chain dehydrogenase; Provisional
Probab=67.88 E-value=9 Score=31.93 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred ccEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
--++|.|+ |..|..+|..|++.+ .+|.++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~~ 40 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREG-ASVVVADINA 40 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 34899997 899999999999987 8999997653
No 475
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.28 E-value=8.5 Score=34.48 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|||+|.-|+-++..|+..|-.++.|++-..
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999998866788888765
No 476
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=67.21 E-value=7.1 Score=35.49 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=29.8
Q ss_pred cCCcccEEEECCChHHHHHHHHHhcCCC-CeEEEeecCCCCC
Q psy7388 56 LLMEYDFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGGHET 96 (224)
Q Consensus 56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~~~~ 96 (224)
......++|||||-+++-++..|.+.+. .+|.+|=+++...
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~ 228 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF 228 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 3467899999999999999999998653 6899998887543
No 477
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=67.20 E-value=8.4 Score=35.56 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|..|+.+|..|+..|-.++.+++...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 457899999999999999999998866899998875
No 478
>KOG2852|consensus
Probab=66.95 E-value=2.8 Score=38.03 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=29.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCC-----CCeEEEeecC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENP-----NWKVLLLEAG 92 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~-----~~~VLlLEaG 92 (224)
.--++|||+|..|+-.|.-|++.+ ...|.++|.-
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 467899999999999999999976 3579999964
No 479
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=66.94 E-value=8.9 Score=32.28 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=26.5
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|.|+ |.-|..+|.+|++++ .+|.++.+..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~ 40 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEG-ARVVIADIKP 40 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCH
Confidence 3788875 788999999999987 8999887654
No 480
>PRK06841 short chain dehydrogenase; Provisional
Probab=66.83 E-value=9.5 Score=31.95 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=26.9
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
=++|+|+ |.-|..+|.+|++.+ .+|.++.+..
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G-~~Vi~~~r~~ 49 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKG-ARVALLDRSE 49 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 3788884 889999999999987 7999887754
No 481
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.43 E-value=9.4 Score=32.93 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|.-|+.+|..|+..|--++.|++...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 356799999999999999999998856888888765
No 482
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.41 E-value=10 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.2
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|+|+ |.-|..+|.+|.+++ .+|.++.+..
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~ 39 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQ 39 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 4789997 999999999999987 7898887653
No 483
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=66.15 E-value=10 Score=31.87 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.6
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|+| +|.-|..+|.+|.+.+ .+|.++.+-+
T Consensus 3 vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~ 34 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQG-HKVIATGRRQ 34 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCC-CEEEEEECCH
Confidence 57777 4889999999999987 8999987653
No 484
>PRK12828 short chain dehydrogenase; Provisional
Probab=66.08 E-value=9.5 Score=31.28 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=26.3
Q ss_pred EEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|.|+ |.-|..+|.+|++++ .+|+++.+-+
T Consensus 10 vlItGatg~iG~~la~~l~~~G-~~v~~~~r~~ 41 (239)
T PRK12828 10 VAITGGFGGLGRATAAWLAARG-ARVALIGRGA 41 (239)
T ss_pred EEEECCCCcHhHHHHHHHHHCC-CeEEEEeCCh
Confidence 788875 899999999999986 8999997743
No 485
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.91 E-value=12 Score=29.10 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=25.7
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
+||+| ++.-|..+|.+|++++..+|+++-+.
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 57888 67789999999999976788887776
No 486
>PRK07831 short chain dehydrogenase; Provisional
Probab=65.89 E-value=9.3 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=27.8
Q ss_pred cccEEEECC-C-hHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 59 EYDFIVVGG-G-SAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 59 ~yD~IVVGs-G-~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
.--++|.|+ | --|..+|.+|++.+ .+|+++.+..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 345899997 5 58999999999987 7899887654
No 487
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.83 E-value=10 Score=31.49 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.4
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|+|+ |.-|..+|.+|.+.+ .+|.++.+.+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 5788885 889999999999987 7899998765
No 488
>PRK07060 short chain dehydrogenase; Provisional
Probab=65.76 E-value=10 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.3
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-++|.|+ |..|..+|.+|++++ .+|.++.+..
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~r~~ 43 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRG-ARVVAAARNA 43 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 4788887 799999999999987 7999987753
No 489
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.58 E-value=10 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=26.6
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
++|.| +|..|..+|.+|.+++ .+|.++.+.+
T Consensus 7 vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~ 38 (258)
T PRK12429 7 ALVTGAASGIGLEIALALAKEG-AKVVIADLND 38 (258)
T ss_pred EEEECCCchHHHHHHHHHHHCC-CeEEEEeCCH
Confidence 78888 6999999999999987 8999987654
No 490
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.39 E-value=8.7 Score=34.74 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
++|||+|.-|+-+|..|+..|-.++.+++...-
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence 689999999999999999988667888887753
No 491
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=65.26 E-value=9.8 Score=35.96 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
-.++|||+|..|.-+|..+.+.+..+|.|+++...
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 36899999999999999988876457999998764
No 492
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=65.22 E-value=7.2 Score=34.34 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=29.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcC----CC------CeEEEeecCCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSEN----PN------WKVLLLEAGGH 94 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~----~~------~~VLlLEaG~~ 94 (224)
++--++|+|+|+||.-+|..|.+. |- .++.|+++-+.
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl 70 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL 70 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence 467799999999999999999885 53 57899988763
No 493
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=65.19 E-value=14 Score=33.05 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHhcC----CC------CeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSEN----PN------WKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~----~~------~~VLlLEaG~~ 94 (224)
+--++|+|+|+||.-+|..|.+. |- .++.++++-+.
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 46689999999999999998764 31 47888888763
No 494
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=65.17 E-value=10 Score=33.61 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-++|+|+|-++..+|..|++.+-.+|.++.+-
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47999999999999999999875678888764
No 495
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=64.99 E-value=8.9 Score=37.61 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
+-.+||+|.|.-|..+|..|.+.+ .+|++||.-++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~ 434 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK-MRITVLERDIS 434 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC-CCEEEEECCHH
Confidence 457999999999999999999876 89999998754
No 496
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.83 E-value=11 Score=35.51 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94 (224)
Q Consensus 59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~ 94 (224)
.--++|||.|..|..+|.+|...+ .+|.++|.-+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChh
Confidence 347899999999999999999886 79999987653
No 497
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=64.72 E-value=11 Score=31.49 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=25.9
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388 61 DFIVVGG-GSAGNVVANRLSENPNWKVLLLEAG 92 (224)
Q Consensus 61 D~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG 92 (224)
-++|+|+ |.-|..+|.+|++.+ .+|+++.+.
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~ 38 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAG-ADIVGAGRS 38 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCC-CEEEEEcCc
Confidence 4788886 678999999999987 799988654
No 498
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=64.59 E-value=11 Score=33.06 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
-.++|+|+|-+|..+|..|.+.+-.+|.|+.+-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 3589999999999999999987746899987754
No 499
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.35 E-value=11 Score=34.62 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93 (224)
Q Consensus 58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~ 93 (224)
...-++|||.|..|+.+|..|+..|=.++.+++...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467899999999999999999998866788888875
No 500
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=64.30 E-value=8.7 Score=38.46 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHh-cCCCCeEEEeecCC
Q psy7388 61 DFIVVGGGSAGNVVANRLS-ENPNWKVLLLEAGG 93 (224)
Q Consensus 61 D~IVVGsG~aG~v~A~rLa-e~~~~~VLlLEaG~ 93 (224)
-+.|||+|..|+-+|..++ ..+ ..|.|.|.-+
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcC-CeEEEEeCCH
Confidence 3789999999999999999 655 9999998754
Done!