RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7388
(224 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 167 bits (426), Expect = 6e-49
Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 24/170 (14%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPV---------LSLYL 108
MEYD+I++G GSAG V+ANRLSE+P+ VLLLEAGG D L+ L
Sbjct: 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG-----PDYRWDFFIQMPAALAFPL 58
Query: 109 HKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD- 167
R++W Y T+P M ++R RGKV+GGSS +N M+Y+RGN D+D WA
Sbjct: 59 QGKRYNWAYETEPE----PHMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELP 114
Query: 168 GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
G EGWSY + LPYFKK+ + D Y G L+V P PL
Sbjct: 115 GLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGKPGTNPL 160
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 142 bits (360), Expect = 1e-39
Identities = 67/166 (40%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH-ETEITDVPVLSLYLHKS-RFDW 115
MEYD+++VG GSAG+V+A RLS+ VL+LEAGG + +P +L R+DW
Sbjct: 6 MEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDW 64
Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSY 174
+RT+P ++ + W RGKV+GGSS +N M+YVRG+ DFD WA G GW Y
Sbjct: 65 GFRTEPEP----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPY 120
Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRC 220
++VLPYFK++ D + +H GG L V P+
Sbjct: 121 DDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAF 166
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 131 bits (331), Expect = 1e-35
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVP-VLSLYLHKSRFDWK 116
D+I++GGGSAG+V+A RLSE+ + VL+LEAGG + + +P L+ R++W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
Y T+P M ++R RGKV+GGSS +N M+Y RGN D+++WA G E W Y
Sbjct: 61 YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
+ LPY+K+ ++ + + Y G + V+ P + PL
Sbjct: 117 DCLPYYKR-LETT--FGGEKP-YRGHDGPIKVRRGPADNPL 153
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 94.9 bits (236), Expect = 1e-22
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 22/134 (16%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVP-VLSLYLH-----KSRFD 114
D +VVGGGSAG VVA RLSE+P+ V +LEAG + + +P L+ L S
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 115 WKYRTQ----PGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNE 170
W+Y + P + RG+V+GGS +N + R DFD W
Sbjct: 62 WRYGVELTDGPRRASAIV---------RGRVLGGSGAVNGGYFCRALPADFDAWPI---P 109
Query: 171 GWSYEEVLPYFKKS 184
GWS+++VLP+F+
Sbjct: 110 GWSWDDVLPHFRAI 123
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 70.4 bits (173), Expect = 6e-15
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 132 KRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKS 184
+R + G +GG S +N +R D+WA++ G EGW Y++ LPY K
Sbjct: 17 RRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV 70
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 51.0 bits (122), Expect = 1e-07
Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRT 119
YD+IVVGGG+AG +A LS+ N+ VLLLE GG +V L + H D T
Sbjct: 56 YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLENF-HIGLAD----T 108
Query: 120 QPGTTACQAMKDKRCVW-TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYE--- 175
P T+A QA V R +V+GG + +N Y R + R F Q A GW +
Sbjct: 109 SP-TSASQAFISTDGVINARARVLGGGTCINAGFYSRASTR-FIQKA-----GWDAKLVN 161
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHAT--GGYLTVQDSPWN 213
E P+ ++ + K+ + A L V SP+N
Sbjct: 162 ESYPWVERQIVHW----PKVAPWQAALRDSLLEVGVSPFN 197
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 43.0 bits (102), Expect = 5e-05
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
EYD +V+G G AG V A R ++ KV L+E G
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGER 38
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 41.0 bits (97), Expect = 2e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEA---GGHETEITDVPVLSL 106
D ++VGGG G +A L+ + KV L+EA D V +L
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSAL 49
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
+YD IV+G G AG V A R + KV L+E G
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAA-KLGKKVALIEKG 35
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 39.4 bits (92), Expect = 8e-04
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
MEYD ++VG G AG+ A RL++ VL+LE G
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGS 36
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 39.2 bits (91), Expect = 0.001
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 53 QKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
+KK M YD IV+GGGS G A R + N KV L+E
Sbjct: 42 KKKPRMVYDLIVIGGGSGGMAAARRAARNK-AKVALVE 78
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 37.1 bits (86), Expect = 0.004
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
+ D ++VG GSAG A LS+NPN KV ++E
Sbjct: 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 37.3 bits (87), Expect = 0.005
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLE 90
E D +V+GGG+AG + A + E NP +VLLLE
Sbjct: 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 36.9 bits (86), Expect = 0.006
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLE 90
M+YD +++GGG G A LSE P+ V LLE
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 60 YDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAG 92
+D ++VGGG G +A L NP + KVLLL+A
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 36.4 bits (84), Expect = 0.010
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
+YD I+VGG AG V+A LS+ KVL+LE
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLE 63
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 35.4 bits (82), Expect = 0.014
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG--GHET 96
D +V+GGG G A L+ V LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGDLASGA 37
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 35.4 bits (82), Expect = 0.014
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
D +++GGG AG A RL+ KV L+E G
Sbjct: 1 DVVIIGGGPAGLAAAIRLA-RLGLKVALIEREGG 33
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 35.5 bits (82), Expect = 0.017
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+D+I+VG G +G V+AN L+ N +VL++E H
Sbjct: 2 FDYIIVGAGLSGIVLANILA-QLNKRVLVVEKRNH 35
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 35.2 bits (82), Expect = 0.022
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
YD IV+G G AG +A R + KV L+E
Sbjct: 6 YDAIVIGAGQAGPPLAARAAG-LGMKVALIE 35
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of animals, yeast, and a number of animal-resident
bacteria [Energy metabolism, Electron transport].
Length = 450
Score = 34.8 bits (80), Expect = 0.029
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
YD++V+GGGS G A R +E+ K LL+EA
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEA 33
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 34.8 bits (81), Expect = 0.030
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLE 90
YDF+++GGG G A +L E P ++ +LE
Sbjct: 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 34.5 bits (79), Expect = 0.031
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95
M+ D +++GGG G A L+E V +LEAG
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 32.1 bits (74), Expect = 0.033
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 64 VVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+VG G +G V A L++ VL+LE
Sbjct: 1 IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDR 30
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 33.3 bits (76), Expect = 0.071
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 61 DFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAG 92
D I+VGGG AG ++A RL P++++ ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 33.5 bits (77), Expect = 0.074
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+D+++VG G +G V+A ++ +VL++E H
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNH 35
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAG 92
D ++VG G AG ++A RL + P +VLL++AG
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAG 33
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 32.7 bits (75), Expect = 0.14
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
D I+VGGG G +A LS K+ L+EA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 32.4 bits (74), Expect = 0.17
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEA----------GGHETEITDVPVLSLYLH 109
D V+GGG AG +A L+ P +V L+E G + +++D+ + H
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEH 58
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 32.0 bits (73), Expect = 0.18
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
E D ++VG G +G A L++ KV ++E
Sbjct: 16 AESDVVIVGAGPSGLTAAYYLAKK-GLKVAIIER 48
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 32.0 bits (74), Expect = 0.23
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
EYD IV+G G G V A R ++ KV ++E
Sbjct: 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKE 36
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 31.5 bits (72), Expect = 0.24
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+E D I+VG G +G A L++ KV + E
Sbjct: 29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFER 61
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 31.5 bits (72), Expect = 0.35
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRLSE----NPNWKVLLLEAGGHETEITDVPVLSLY 107
+ + D ++VG G AG A LS P K+ +++ G + E P
Sbjct: 11 QEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVD-VGLDIEQRLCPKDEKK 69
Query: 108 LHK 110
L K
Sbjct: 70 LEK 72
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 31.6 bits (72), Expect = 0.35
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
YD +V+G G G A L+ KV +LE
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEK 34
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 31.0 bits (71), Expect = 0.40
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
+D I++GGG AG + A ++ +VLL++ G
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKG 35
>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional.
Length = 394
Score = 31.2 bits (71), Expect = 0.42
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 82 PNWKVLLLEAGGHET-EITDVPVLSLYLHK 110
PN KVL LE+ G T E+ DVP LS H+
Sbjct: 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHE 174
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 31.2 bits (72), Expect = 0.43
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 58 MEYDFIVVGGGSAG 71
EYD IVVGGG AG
Sbjct: 3 EEYDVIVVGGGHAG 16
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 31.0 bits (71), Expect = 0.49
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
M+ D IVVG G AG V A L++ +VLLL+
Sbjct: 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLD 34
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 31.0 bits (71), Expect = 0.52
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
D ++GGG AG +A L+ W+V L EA
Sbjct: 262 DAAIIGGGIAGAALALALARR-GWQVTLYEA 291
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 31.0 bits (71), Expect = 0.53
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL 89
EYD IV+GGG AG V A + K LLL
Sbjct: 4 EYDVIVIGGGHAG-VEAALAAARMGAKTLLL 33
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 30.5 bits (70), Expect = 0.56
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 55 KLLMEY---DFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
+ L++Y D +VG G +G A L++ KV + E
Sbjct: 18 EKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFE 55
>gnl|CDD|176677 cd07254, Glo_EDI_BRP_like_20, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and types I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping. The proteins of this family share three
conserved metal binding amino acids with the type I
extradiol dioxygenases, which shows no domain swapping.
Length = 120
Score = 29.6 bits (67), Expect = 0.58
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 75 ANRLSENPNWKVLLLEAGGHETEITD---VPVLS---LYLHKSRF---DWKYRTQPGTTA 125
A L E+P +L E G + V V S + K+R + TT
Sbjct: 35 AKFLLEDPRLNFVLNERPGAPGGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTC 94
Query: 126 CQAMKDKRCVWTR 138
C A++DK VW
Sbjct: 95 CYAVQDK--VWVT 105
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 30.6 bits (70), Expect = 0.60
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 61 DFIVVGGGSAG---NVVANRLSENPNWKVLLLEAGGH 94
D +VVGGG AG + A RL KVLL+E G
Sbjct: 1 DVVVVGGGPAGVAAAIAAARL----GAKVLLVERRGW 33
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 30.7 bits (70), Expect = 0.60
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA---GG 93
YD IV+GGG G V A R ++ KV L+E GG
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQL-GLKVALVEKEYLGG 37
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 30.6 bits (70), Expect = 0.66
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
YD IV+GGG+AG + A ++ +VLL++ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK-RGRRVLLIDKGK 33
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 30.4 bits (69), Expect = 0.66
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
YD +VVG G AG A RL++ +VLLLE
Sbjct: 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLE 30
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 30.5 bits (69), Expect = 0.67
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLLLEA----GG--HETEITDVPV 103
I+VG G +G A LSE +L+LEA GG + V V
Sbjct: 30 IIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSV 76
>gnl|CDD|217133 pfam02598, Methyltrn_RNA_3, Putative RNA methyltransferase. This
family has a TIM barrel-like fold with a deep C-terminal
trefoil knot. The arrangement of its hydrophilic and
hydrophobic surfaces are opposite to that of the classic
TIM barrel proteins. It is likely to bind RNA, and may
function as a methyltransferase.
Length = 283
Score = 30.4 bits (69), Expect = 0.68
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 48 TQIFDQKKLLMEYDFIVV--GGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLS 105
+ +F + YD + G + + N+K +LL GG E +L
Sbjct: 187 SDVFKKSPFPEGYDVTIGTSRRGKDISEAELEIKLMENFKHILLVFGGWEPLKGSDEILK 246
Query: 106 LYLHKSRFDWKYRTQPGTT 124
K FD T P
Sbjct: 247 DQGPKELFDGYLNTPPNQG 265
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 30.4 bits (69), Expect = 0.73
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE----AGGH 94
E+D +V+GGG AG A +E KV LL GH
Sbjct: 5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGH 44
>gnl|CDD|218897 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa
myosin-cross-reactive antigen like family. Members of
this family are thought to have structural features in
common with the beta chain of the class II antigens, as
well as myosin, and may play an important role in the
pathogenesis.
Length = 500
Score = 30.1 bits (68), Expect = 0.88
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 164 WAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPW 212
W +++ Y +K + +R+PY K TGG +TV+DS W
Sbjct: 324 WFVSATVTCHDDKIPKYIEK-ITKRDPYSGKT----VTGGIITVKDSNW 367
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 30.3 bits (69), Expect = 0.89
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
E+D IV+GGG G +A + KV L+E G
Sbjct: 11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKG 44
>gnl|CDD|217896 pfam04104, DNA_primase_lrg, Eukaryotic and archaeal DNA primase,
large subunit. DNA primase is the polymerase that
synthesises small RNA primers for the Okazaki fragments
made during discontinuous DNA replication. DNA primase
is a heterodimer of two subunits, the small subunit Pri1
(48 kDa in yeast), and the large subunit Pri2 (58 kDa in
the yeast S. cerevisiae). The large subunit of DNA
primase forms interactions with the small subunit and
the structure implicates that it is not directly
involved in catalysis, but plays roles in correctly
positioning the primase/DNA complex, and in the transfer
of RNA to DNA polymerase.
Length = 217
Score = 29.7 bits (67), Expect = 1.00
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 171 GWSYEEVLPYFKKSMDQRNPYLAKIDRY---HATG--GYLTVQDSPWN-------TPLGF 218
G S +E+L +++++ + +P K RY H G G T +P + P
Sbjct: 133 GLSLDEILEFWREAFTRTSPDFDKEYRYNIRHNYGLEGKRTNY-TPPSCEKIINKPPPKG 191
Query: 219 RC-GCMF 224
GC F
Sbjct: 192 DAHGCPF 198
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
D VVG G +G A L+ VL+ EA
Sbjct: 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine. This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
E D I+VG G +G A L++N KV +LE
Sbjct: 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLE 51
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 29.7 bits (68), Expect = 1.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 59 EYDFIVVGGGSAGNVVANR 77
+YD IV+GGGS G ANR
Sbjct: 4 DYDLIVIGGGSGGIASANR 22
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 60 YDFIVVGGGSAGNVVANRLSE 80
D +VVGGG AG VA ++SE
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSE 49
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 29.7 bits (67), Expect = 1.4
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA-----GGHETEITDVPVLSLYLHKSRFD 114
YD IV+G G AG +A +L+ KV L+E GG I +P +L L + +
Sbjct: 4 YDLIVIGFGKAGKTLAAKLASAGK-KVALVEESKAMYGGTCINIGCIPTKTL-LVAAEKN 61
Query: 115 WKYRTQPGTTACQAMKDKRCVWTR 138
+ Q M K V +R
Sbjct: 62 LSFE--------QVMATKNTVTSR 77
>gnl|CDD|225561 COG3016, PhuW, Uncharacterized iron-regulated protein [Function
unknown].
Length = 295
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 74 VANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHK-----------------SRFDWK 116
+A L +P+ KVLL+ H + VP L+ +
Sbjct: 219 MAKTLILHPDRKVLLIAGSFHTYKGLGVPYHLKDLYPGVKVVVLYPEGEIEKFYFDYSLD 278
Query: 117 YRTQPGTTACQAMKDKR 133
+ +P +T + ++
Sbjct: 279 FSKEPSSTNSIRLPNEA 295
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 29.4 bits (67), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 60 YDFIVVGGGSAGNVVA---NRLSENPNWKVLLLEA 91
D I+VGGG AG +A +RLS V L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSH-GGLPVALIEA 37
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 29.2 bits (66), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
YD +VGGG G +A L ++ ++ L+EA
Sbjct: 18 TYDVAIVGGGIVGLTLAAAL-KDSGLRIALIEA 49
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 27.9 bits (63), Expect = 2.0
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 62 FIVVGGGSAGNVVANRLSENPNWKVLLLE 90
I++G G G +A L E V++++
Sbjct: 1 IIIIGYGRVGRSLAEELREG-GPDVVVID 28
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 29.1 bits (65), Expect = 2.1
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 62 FIVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
++VGGG+AG A L ++ L+
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPK 34
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 28.9 bits (65), Expect = 2.1
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNW---KVLLLEAGGHETEITDVPVLSLYLHKSR 112
++D +VG G G +A L+ + L++A D ++L H SR
Sbjct: 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALS-HGSR 66
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 28.9 bits (65), Expect = 2.1
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95
D +VG G AG +A L+ V LLE E
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAG-LDVTLLERAPRE 37
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 28.9 bits (65), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
D I+VG G AG + A + ++V +LEA
Sbjct: 9 DVIIVGAGLAG-LSAAYELKKAGYQVQILEA 38
>gnl|CDD|226174 COG3648, COG3648, Uricase (urate oxidase) [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 299
Score = 28.7 bits (64), Expect = 2.3
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 25/107 (23%)
Query: 122 GTTACQAMKDKRCVWTRGKVIGGSSVL---------------NTMLYVRGNRRDFDQWAA 166
G MK KR +R + V NT++ ++ A
Sbjct: 16 GKALVPLMKIKRIPESRTHTVREMDVRVALYGAFLASFTDGDNTLVVATDTMKNTIYRLA 75
Query: 167 DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRY-HATGGYLTVQDSPW 212
G + EE L K +D Y H TGG+L + PW
Sbjct: 76 KEGFGSTIEEFLKELAKHF---------VDTYSHITGGFLEGTEHPW 113
>gnl|CDD|153240 cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E. Type 1
glutamine amidotransferase (GATase1)-like domain found
in peptidase E. This group contains proteins similar to
the aspartyl dipeptidases Salmonella typhimurium
peptidase E and Xenopus laevis peptidase E. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Peptidase E is believed to be a serine peptidase having
a Ser-His-Glu catalytic triad which differs from the
Cys-His-Glu catalytic triad typical of GATase1 domains
by having a Ser in place of the reactive Cys at the
nucleophile elbow. Xenopus PepE is developmentally
regulated in response to thyroid hormone and, it is
thought to play a role in apoptosis during tail
reabsorption.
Length = 212
Score = 28.4 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 16 VASSFLIGTKALFIPTFM------AALLYFRYD-LYDPETQIF------DQKKLLMEYDF 62
+ S K LF+PT A Y ++ L E D L+E D
Sbjct: 24 LLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADV 83
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLLLEA 91
I VGGG+ N L++ W+ L+A
Sbjct: 84 IYVGGGN----TFNLLAQ---WREHGLDA 105
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 28.8 bits (65), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
D +VGGG G +A L+++ + V +LE
Sbjct: 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLE 35
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of plants and some bacteria, including cyanobacteria
[Energy metabolism, Electron transport].
Length = 446
Score = 28.6 bits (64), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
+YD V+G GS G V A RL+ KV + E
Sbjct: 2 DYDLFVIGAGSGG-VRAARLAAALGAKVAIAE 32
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 28.7 bits (65), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
I++GGG+AG + A + VLLLE
Sbjct: 1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNK 30
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 28.6 bits (64), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
D IVVG G AG V A L++ +VL+L+ G
Sbjct: 5 TADVIVVGAGLAGLVAAAELADA-GKRVLILDQEG 38
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 28.2 bits (63), Expect = 3.6
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 24/75 (32%)
Query: 32 FMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSE---------NP 82
A L P T + ++K+LL F+VVGGG G A L++ NP
Sbjct: 157 IERASL--------PTTSVEERKRLL---HFVVVGGGPTGVEFAAELADFFRDDVRNLNP 205
Query: 83 NW----KVLLLEAGG 93
KV +LEAG
Sbjct: 206 ELVEECKVTVLEAGS 220
>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase. Crotonyl-CoA
reductase, a member of the medium chain
dehydrogenase/reductase family, catalyzes the
NADPH-dependent conversion of crotonyl-CoA to
butyryl-CoA, a step in (2S)-methylmalonyl-CoA
production for straight-chain fatty acid biosynthesis.
Like enoyl reductase, another enzyme in fatty acid
synthesis, crotonyl-CoA reductase is a member of the
zinc-dependent alcohol dehydrogenase-like medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 393
Score = 28.2 bits (63), Expect = 3.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 122 GTTACQAMKDKRCVWTRGKVIGGSSVLN 149
GTT D R +W R K I GS N
Sbjct: 316 GTTGYNHTYDNRYLWMRQKRIQGSHFAN 343
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 28.2 bits (63), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLE---AGGHETEITDV 101
YD I++GGG AG + A + L++E GG T ++V
Sbjct: 5 YDLIIIGGGPAG-LSAGIYAGRAKLDTLIIEKDDFGGQITITSEV 48
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 28.1 bits (63), Expect = 4.4
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLLLEA 91
IV+GGG AG + A R + ++KV LLE+
Sbjct: 4 IVIGGGIAG-IAAARALHDASFKVTLLES 31
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 26.8 bits (59), Expect = 4.5
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 26 ALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWK 85
L P D+ P+ + L +YD +++ GG + L+ +
Sbjct: 13 ELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPG---TPDDLARDEALL 69
Query: 86 VLLLEAGGHETEITDVPVLSLYL 108
LL EA P+L + L
Sbjct: 70 ALLREAAAA-----GKPILGICL 87
>gnl|CDD|221277 pfam11863, DUF3383, Protein of unknown function (DUF3383). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and viruses. Proteins
in this family are typically between 356 to 501 amino
acids in length.
Length = 478
Score = 27.8 bits (62), Expect = 4.5
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 28/102 (27%)
Query: 68 GSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFD-------WKYRTQ 120
+ +A++L + ++L E +L + F K++
Sbjct: 257 ANNTTDIASKLKAAGYSRTIVLY--STTGEYAAAALLG-RAASTNFGGNNGTITLKFKQL 313
Query: 121 PGTTA-------CQAMKDKRC-----------VWTRGKVIGG 144
PG TA A+ K + GK GG
Sbjct: 314 PGVTADVLTTSQANALDAKNGNYYGQYDNSTAITQEGKTSGG 355
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT
repeat-containing protein; Provisional.
Length = 897
Score = 27.9 bits (62), Expect = 5.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
D +V+GGG+AG + A +E+ VLLLE
Sbjct: 15 DVLVIGGGTAGTMAALTAAEH-GANVLLLE 43
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 27.5 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+YD IV+GGGS G A + KV+LL+
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAY-GAKVMLLDF 33
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 27.7 bits (62), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 59 EYDFIVVGGGSAGNVVA 75
EYD +VVG G+AG V A
Sbjct: 7 EYDVVVVGSGAAGMVAA 23
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 27.4 bits (61), Expect = 6.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 59 EYDFIVVGGGSAGNVVA 75
+YD VVGGG G A
Sbjct: 3 KYDIAVVGGGMVGAATA 19
>gnl|CDD|227060 COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].
Length = 587
Score = 27.5 bits (61), Expect = 6.6
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 164 WAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPW 212
W +++LPY ++ + R+ K+ TGG +T++DS W
Sbjct: 342 WFVSATVTCKNDKILPYIER-LTHRDLIPGKVV----TGGIITIKDSNW 385
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 27.1 bits (61), Expect = 7.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95
D +V+GGG+A A E VLLLEA E
Sbjct: 3 SMVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPRE 39
>gnl|CDD|226385 COG3867, COG3867, Arabinogalactan endo-1,4-beta-galactosidase
[Carbohydrate transport and metabolism].
Length = 403
Score = 27.1 bits (60), Expect = 7.8
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 144 GSSVLNTMLYVRGNRRDFDQWAADGNEGWS-YEEVLPYFKKSMDQRNPYLAKIDRYH 199
G+ L+ G R+FD+ AA N G EV P K ++ Y
Sbjct: 178 GNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEG--ENNSLYR 232
>gnl|CDD|179117 PRK00770, PRK00770, deoxyhypusine synthase-like protein;
Provisional.
Length = 384
Score = 27.1 bits (60), Expect = 8.0
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 7 PGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVG 66
PG + + VA+ L G++ + P D+ + ++ K+ + +++G
Sbjct: 196 PGDSSIGMNVAALALEGSELVLDPAI---------DVNETAAIAYNAKESEGKSGAVILG 246
Query: 67 GGSAGNVVANRLSENPN-WKVLLLEAGGHE--TEITD 100
GGS N + L P +VL LE GH+ +ITD
Sbjct: 247 GGSPKNFL---LQTQPQIHEVLGLEERGHDYFIQITD 280
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The sequence from
Burkholderia cepacia was identified as part of a gene
cluster involved in the degradation of
2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g.
Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 25.4 bits (56), Expect = 8.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
L + Y+ I GG G L+ NPN +V +LE G
Sbjct: 22 LGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGD 59
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family
consists of cell division protein FtsZ, a GTPase found
in bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 26.9 bits (60), Expect = 8.5
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 45 DPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSEN 81
+ ET+ + + + V+G G GN NR+ E
Sbjct: 3 EIETEFRELIQPSNKAKIKVIGVGGGGNNTVNRMLEE 39
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 26.9 bits (60), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
D +V+G G AG A +E KV ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGL-KVAVVEKGQ 32
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 27.1 bits (61), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE 80
M++D +V+GGG AG A +E
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAE 23
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 27.0 bits (60), Expect = 9.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE 80
M +D ++GGG AG L +
Sbjct: 1 MNFDVAIIGGGLAGLTCGLALQQ 23
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to be
a serine peptidase having a Ser-His-Glu catalytic triad
which differs from the Cys-His-Glu catalytic triad of
typical GATase1 domains, by having a Ser in place of the
reactive Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 25.6 bits (56), Expect = 9.6
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 26 ALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWK 85
L P D+ P+ + L +YD +++ GG + L+ +
Sbjct: 13 ELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPG---TPDDLAWDEALL 69
Query: 86 VLLLEAGGHETEITDVPVLSLYL 108
LL EA PVL + L
Sbjct: 70 ALLREAAAA-----GKPVLGICL 87
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 26.8 bits (60), Expect = 9.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLE---AGGHETEITDV 101
D I++G G AG + A + N K LL+E GG T T+V
Sbjct: 1 DVIIIGAGPAG-LTAAIYAARANLKPLLIEGGEPGGQLTTTTEV 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,655,550
Number of extensions: 1085055
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 112
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)