RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7388
(224 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 255 bits (654), Expect = 2e-82
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 38 YFRYDLYDPETQIFDQKKLLM--EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95
Y D ++ + + YD+I+ GGG G VA +L+ENP KVL++E G +E
Sbjct: 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 96 TE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTML 152
+ I + P + + D Y T P + ++ GK +GGS+++N
Sbjct: 61 SNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDS 114
Query: 153 YVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKI-------DRYHATGGY 204
+ R ++ D W G EGW+++ + Y KK+ R P A++ H T G
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT 174
Query: 205 LTVQDSPW---NTPL 216
+ +P+
Sbjct: 175 VQSGARDNGQPWSPI 189
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 251 bits (644), Expect = 4e-81
Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 14/168 (8%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI--TDVPVLSLYL-HKSRFDW 115
++D++VVG G+AGNVVA RL+E+P+ VL+LEAG + + + P+L+ L S FDW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSY 174
Y T + + RG+++GGSS ++ M+ +RG+ DFD++AA G+EGW++
Sbjct: 62 NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 175 EEVLPYFKKS------MDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
+ + + +K+ D N I H T G +++ + TPL
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPL 165
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 247 bits (633), Expect = 2e-79
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVPVLSLYLHKSRFDW 115
+DF++VGGG+AGN VA RL+ENPN VL++EAG E P ++ L S++DW
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 116 KYRTQPGTTACQAMKDKRCVW--TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWS 173
Y+T + +R TRGK +GGSS LN +V G++ FDQW G + W+
Sbjct: 66 AYKTTM----VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 174 YEEVLPYFKKSMDQRNPYLA--KIDRYHATGGYLTVQDSPW 212
++ ++PY +KS + GG + + +
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAEL 162
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 243 bits (622), Expect = 1e-77
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVPVLSLYLHKSRFDW 115
D+I+ GGG G A RL+ENPN VL++E+G +E++ I + + S D
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78
Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSY 174
Y T A ++ + G +GGS+++N + R ++ D W GNEGW++
Sbjct: 79 AYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNW 133
Query: 175 EEVLPYFKKSMDQRNPYLAKI-------DRYHATGGYLTVQD---SPWNTPL 216
+ V Y ++ R P +I H G + +P+
Sbjct: 134 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPI 185
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 214 bits (548), Expect = 4e-67
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITD-VPVLSLY-LHKSRFDW 115
E+D+IVVGGGSAG VA RLSE+P V L+EAG + + + + + L +S +DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSY 174
Y +P Q + R KV+GG S N+ + R D D+W A G GW+
Sbjct: 72 DYPIEP-----QENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
E P +K+ + N +H G + + + P P
Sbjct: 127 EAAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 204 bits (522), Expect = 2e-63
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEIT-DVPVLSLYLHKSRFDWKY 117
D ++VGGGSAG+++A RLSE+P+ +VLL+EAG T+ P L +DW Y
Sbjct: 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDY 76
Query: 118 RTQPGTTACQA-MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGWSYE 175
RT+ QA + W RG++IGGSS L+ M Y+RG+ DF W A G+ W ++
Sbjct: 77 RTEA-----QAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWD 131
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQD--SPWNTPL 216
E+LP F+ + +P D H GG L + + PL
Sbjct: 132 ELLPVFQAI--EDHPLGG--DGIHGKGGPLPIHLPADEVS-PL 169
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 203 bits (519), Expect = 6e-63
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 39 FRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI 98
F YD D E L YD+++VGGG++G +A LSE +KVL+LE G T
Sbjct: 14 FAYDATDLE--------LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAY 63
Query: 99 TDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNR 158
+V +++ + + +T + + + RG+V+GG+S++N +Y R N
Sbjct: 64 PNVLTADGFVYNLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 159 RDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
+ W + V ++ D Y W +
Sbjct: 120 SIYSAS----GVDWDMDLVNQTYEWVEDT--------IVYK-------PNSQSWQSVT 158
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 167 bits (426), Expect = 3e-49
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 25/163 (15%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG----HETEITDVPVLSLYL----HK 110
YD+I+VG G G + A+RLSE KVLLLE GG P +
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 111 SRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNE 170
T K G ++GG + +N LY N DF +
Sbjct: 66 PGLFESLFTDSN----PFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDF-----SSSV 116
Query: 171 GW--SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSP 211
GW S+ PY K + + +T G ++ S
Sbjct: 117 GWPSSWTNHAPYTSKLSSRLPS-----TDHPSTDGQRYLEQSF 154
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 74.7 bits (183), Expect = 7e-16
Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 24/152 (15%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG---------GHETEITDVPVLSLYLH 109
+V+G G V A RL E + L+LE G G+ P
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 110 KSRFDWKYR-----------TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNR 158
K+R + P + + G+ +GG S++N + V R
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 159 RDFDQWAADGNEGWSYEEVLPYFKKSMDQRNP 190
F++ S E YF ++
Sbjct: 124 SYFEEIL---PRVDSSEMYDRYFPRANSMLRV 152
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 66.3 bits (161), Expect = 6e-13
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 23/144 (15%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVP---------------- 102
+V+G G G V A RL++ ++E G
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 103 ---VLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRR 159
+ F + + +G+ +GG S++N + V R
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 160 DFDQWAADGNEGWSYEEVLPYFKK 183
F++ S E YF +
Sbjct: 130 YFEEIL---PSVDSNEMYNKYFPR 150
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 56.0 bits (134), Expect = 2e-09
Identities = 32/190 (16%), Positives = 52/190 (27%), Gaps = 45/190 (23%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
+YD ++VG G G A L +KV + + G ++ + + + K+
Sbjct: 46 KYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 104
Query: 119 TQP---------------------------------GTTACQAMKDKRCVWTRGKVIGGS 145
G+ Q +V+GG
Sbjct: 105 NVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGM 164
Query: 146 SVLNTMLYVRGNRRDF-----DQWAADGNEGW-SYEEVLPYFKKSMDQ-----RNPYLAK 194
S T R +R D AD E Y + YF+ DQ R+ +
Sbjct: 165 STAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLN 224
Query: 195 IDRYHATGGY 204
G
Sbjct: 225 KLTEEYKGQR 234
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 44.8 bits (105), Expect = 8e-06
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 54 KKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+ + +D VVG G G +A R++ + +VL+LE H
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPH 42
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione
reductase type II family, thiazole synthase,
mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces
cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 43.6 bits (102), Expect = 2e-05
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAG 92
D I+VG GS+G A +++N P+ KV ++E+
Sbjct: 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 99
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 42.8 bits (100), Expect = 4e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
E D +VVG GSAG A +S+NPN +V ++E
Sbjct: 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 42.8 bits (100), Expect = 4e-05
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+D+++VG G AG+V+A RL+ + +VL+++ H
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPH 63
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 42.5 bits (100), Expect = 5e-05
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 40 RYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
+ + + + + + +D++VVG G G A L VL+++AG
Sbjct: 4 SHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 42.8 bits (99), Expect = 5e-05
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGHETE 97
+D +V+G G G A L + P +LL+E GG E
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE 75
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 42.5 bits (100), Expect = 5e-05
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
++YD +++GGG AG+ A +LS K+LL+++
Sbjct: 5 LKYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSK 38
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 41.9 bits (99), Expect = 7e-05
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 58 ME-YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
ME YD +VVGGG G+ A ++ K L++E
Sbjct: 2 METYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPE 38
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 42.2 bits (98), Expect = 7e-05
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+ D +V+G G G A RL++ +++++
Sbjct: 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 41.6 bits (97), Expect = 9e-05
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
YD+I+VG G G V AN L + N KVL++E H
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 41.6 bits (97), Expect = 1e-04
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
++VG G +G V+ +L+E +V +++ H
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 41.4 bits (97), Expect = 1e-04
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGH 94
+ ++G G AG L + +LE GG
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGK 45
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 40.9 bits (95), Expect = 2e-04
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEA----GGH 94
E D ++VG GS G A LS P+ ++ ++EA GG
Sbjct: 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG 119
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 38.5 bits (90), Expect = 0.001
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG--GHET 96
M+YD I++G GS G + VL+ +A H+
Sbjct: 1 MKYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPPHQH 40
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
+D I +GGGS G VA + + +V L+E+
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA 37
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLE----AGGH 94
D +VVG G AG A +++ KV+L+E GG+
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGN 164
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 37.6 bits (88), Expect = 0.002
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
M YD IV+GGGS G A R + + N KV L+E
Sbjct: 1 MVYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR 35
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 37.4 bits (87), Expect = 0.003
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE----AGGH 94
+ D +++G G AG A + KV+LLE GG+
Sbjct: 119 IAAGVKETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGN 164
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 37.1 bits (87), Expect = 0.003
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
+YD V+GGGS G + KV + E
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEFR 38
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 37.0 bits (86), Expect = 0.004
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GG 93
++ D +VG G +G A L + V ++EA GG
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGG 42
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 37.0 bits (86), Expect = 0.004
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE----AGGH 94
+VVG GSAG + + V+L++ +GG+
Sbjct: 120 ETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGN 159
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 36.7 bits (86), Expect = 0.004
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 45 DPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
D T+ + M YD IV+GGG +G + A +E VLLL+ G
Sbjct: 12 DLGTENLYFQSNAMHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKG 58
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 36.4 bits (84), Expect = 0.005
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+ D +VVGGG +G A L ++ V++LEA
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEA 35
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 36.3 bits (84), Expect = 0.005
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GG 93
YD IVVGGG +G A L+ KVLLLE GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGG 38
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 36.3 bits (84), Expect = 0.005
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+ D +V+G G AG V A+ ++++ +KV ++E
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKF 39
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 36.3 bits (85), Expect = 0.005
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
YD++V+GGGS G A R + K LL+EA
Sbjct: 11 HYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA 44
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 36.0 bits (82), Expect = 0.007
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
L+ +++G G G A RL+E L E
Sbjct: 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT 44
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.9 bits (82), Expect = 0.007
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GG---HETEITDVPV 103
+ I++G G AG A+ L +N L+LEA GG T
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY 59
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 35.9 bits (84), Expect = 0.008
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
YD++V+GGGS G A R +E + ++E+
Sbjct: 20 SYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK 53
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 35.5 bits (82), Expect = 0.009
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 45 DPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRL-----SENPNWKVLLLEAGG 93
D + + ++ E D ++VG G AG A RL + +V L+E
Sbjct: 21 DKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 74
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 35.7 bits (82), Expect = 0.009
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+D IV+GGG G+ +A+ ++ +VLLLE
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAF 41
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 35.6 bits (83), Expect = 0.009
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
++D V+G GS G A +V + E
Sbjct: 26 DFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEYR 59
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 35.6 bits (83), Expect = 0.010
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
YD +V+G GS G + +V +++
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL 35
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 35.6 bits (83), Expect = 0.010
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
YD+I +GGGS G NR + K L+EA
Sbjct: 4 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE 37
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 35.2 bits (82), Expect = 0.013
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+D +V+G GS G + +V +++
Sbjct: 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 34.4 bits (80), Expect = 0.019
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+ D IV+G G G +A L+ +VL+ EA
Sbjct: 4 DIDCIVIGAGVVGLAIARALAA-GGHEVLVAEA 35
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 34.4 bits (80), Expect = 0.021
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
D K +++++GG +AG A ++ + N V+ LE G
Sbjct: 29 DDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.4 bits (80), Expect = 0.023
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
+D +V+GGGS G A ++ KV + +
Sbjct: 6 SFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYV 38
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 34.6 bits (79), Expect = 0.024
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
++GGG AG+V L + V + E
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSAF 57
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 34.2 bits (79), Expect = 0.026
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+YD IV+GGGS G ++ K +L+
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDY 138
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 34.1 bits (79), Expect = 0.026
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+E D++V+G G AG LS + +V++LE
Sbjct: 8 IEADYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQ 42
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 34.5 bits (78), Expect = 0.026
Identities = 24/175 (13%), Positives = 40/175 (22%), Gaps = 24/175 (13%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGHETEITDVPVLSLYLHKSRF 113
I++G G +G A +L V LLEA GG V +
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR--------VATFRKGNYVA 156
Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVL----NTMLYVRGNRRDFDQWAADGN 169
D G + K + + G ++
Sbjct: 157 DLGAMVVTGLGG-------NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQ 209
Query: 170 EGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF 224
E E Y +D + A + +Q+ +
Sbjct: 210 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIV 264
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 34.1 bits (79), Expect = 0.027
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+YD I++GGGS G A ++ KV++L+
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDF 63
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 34.1 bits (79), Expect = 0.028
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+YD IV+GGGSAG A N +V L+
Sbjct: 9 DYDLIVIGGGSAGLACAKEAVLN-GARVACLDF 40
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 33.8 bits (78), Expect = 0.033
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAG 92
YD I+VGGG G A L++N V +LE G
Sbjct: 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.2 bits (77), Expect = 0.035
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGH 94
I++G G +G A +L V LLEA GG
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR 316
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 33.7 bits (78), Expect = 0.040
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
D K +VVGG + G VA RL + +++++E G +
Sbjct: 29 DDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 33.3 bits (76), Expect = 0.047
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GG--HETEITDVPV 103
IVVG G +G A RLSE +L+LEA GG H+T + V
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINV 54
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 33.4 bits (77), Expect = 0.047
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
+D IVVG GS G +L++ K LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFD 36
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 33.5 bits (76), Expect = 0.049
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEA----GGH 94
M +V+GGG +G + LS KV+L+E+ GG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGW 42
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 33.1 bits (74), Expect = 0.051
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
M ++G G AG A L+ +V L +
Sbjct: 1 MTVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRG 36
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 33.2 bits (76), Expect = 0.057
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
YD +VVGGG G A +++E +VL+LE
Sbjct: 5 YDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT 37
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 33.2 bits (76), Expect = 0.061
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 63 IVVGGGSAGNVVANRLSE-NPNWKVLLLEA 91
+VVGGG+ G A + +P+ +V L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 32.6 bits (73), Expect = 0.085
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGHETEITDVPVLSLYLHKSRFD 114
YD I++G G +++ LS K+L+L+ GG + + + + K
Sbjct: 20 HYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 115 WKYR 118
KY
Sbjct: 79 SKYG 82
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 32.2 bits (74), Expect = 0.10
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
Y+ +V+GGG G+ +A L++ N L E+G
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESG 49
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 32.5 bits (75), Expect = 0.10
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 45 DPETQIFDQKKLLME-YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
D T+ + ++ E D +++G G+AG + A + +VL+++
Sbjct: 12 DLGTENLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHA 59
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 32.0 bits (72), Expect = 0.13
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
V+G G +G A +L V + EA G
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGK 47
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 32.2 bits (73), Expect = 0.13
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GG 93
+ +V+GGG AG A L + +KV +LEA GG
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGG 48
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 31.7 bits (73), Expect = 0.13
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 58 MEYDFIVVGGGSAGN---VVANRLSENPNWKVLLLEAGG 93
M++D I++GG AG + R +LL++AG
Sbjct: 1 MKFDVIIIGGSYAGLSAALQLGRA----RKNILLVDAGE 35
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 31.9 bits (73), Expect = 0.14
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+ E D +V G G AG + + VL+LE
Sbjct: 34 TVTEWDYEADVVVAGYGIAGVAASIEAARA-GADVLVLERTSG 75
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 31.9 bits (73), Expect = 0.14
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL 89
D +++G G+AG +A RL+ +V++L
Sbjct: 8 SCDVLIIGSGAAGLSLALRLA--DQHQVIVL 36
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 32.1 bits (73), Expect = 0.16
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 58 MEYDFIVVGGGSAG---NVVANRLSENPNWKVLLLE 90
+E D +++GGG +G A ++ KV L+E
Sbjct: 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 31.7 bits (73), Expect = 0.17
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
+ I++G G+AG A +L++ V + +
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFD 34
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 31.8 bits (73), Expect = 0.17
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
+ + +V+GGG G +A+ L++ +V ++E
Sbjct: 5 KSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKR 37
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 31.7 bits (73), Expect = 0.20
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
M +++G AG A + P ++ L++
Sbjct: 1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 31.4 bits (72), Expect = 0.23
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 63 IVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
+++GG + G A R + ++++ E G +
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 31.3 bits (72), Expect = 0.23
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 63 IVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
IV+G G L + +P+ ++ E G
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 31.3 bits (72), Expect = 0.24
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 63 IVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
+VVG + G A+++ + +++ E
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 31.3 bits (72), Expect = 0.24
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 63 IVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
+V+G + G A R +P V +++
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 31.3 bits (72), Expect = 0.25
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 63 IVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
+++GGG+AG A+R+ P W V + EA
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 31.3 bits (72), Expect = 0.26
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 63 IVVGGGSAGNVVANRL-SENPNWKVLLLEAGGH 94
IVVG AG + +++P+ V E +
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 30.2 bits (69), Expect = 0.27
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 13/51 (25%)
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLLLEAGG--------HETEITDVPVLS 105
++ G GSAG +AN L + + + H+T + + +
Sbjct: 8 LIYGAGSAGLQLANMLRQGKEFHPI-----AFIDDDRKKHKTTMQGITIYR 53
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 31.0 bits (70), Expect = 0.27
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
++VG G+ G A L+ V +L+
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 31.1 bits (70), Expect = 0.31
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH 94
++VGGG G A P+ + LLEAG
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER 40
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 31.0 bits (71), Expect = 0.33
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
V+G G A A + E +V L+E G
Sbjct: 4 PVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 31.1 bits (70), Expect = 0.33
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 59 EYDFIVVGGGSAGNVVANRLSE-----NPNWKVLLLE 90
D ++VGGG A P K+LL++
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 30.7 bits (69), Expect = 0.43
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
+D IV+GGG G L+ +K LLLEA
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVA-GFKTLLLEA 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.43
Identities = 30/217 (13%), Positives = 55/217 (25%), Gaps = 59/217 (27%)
Query: 27 LFIPTFMAALLYFRYDLYDPET-QIFDQK-KLLMEYDFIVVGGGSAGNVVANRLSENPNW 84
L + LL ++ + + F+ K+L+ + V + LS
Sbjct: 238 LKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLT---------TRFKQVTDFLSAATTT 287
Query: 85 KVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQ-----------AMKDKR 133
+ L T +L YL D +++D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTTNPRRLSIIAESIRDGL 341
Query: 134 CVWTRGKVIGGSSVLNTM------LYVRGNRRDFDQ------------------WAADGN 169
W K + + + L R+ FD+ W
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 170 EGWSYEEVLPYF-KKSMDQRNPYLAKIDRYHATGGYL 205
V+ K S+ ++ P + I YL
Sbjct: 402 S--DVMVVVNKLHKYSLVEKQPKESTI-SIP--SIYL 433
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 30.3 bits (68), Expect = 0.43
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
+ VVGGG +G VA+ L +LLE+
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSAR 50
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 30.3 bits (68), Expect = 0.46
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 59 EYDFIVVGGGSAGNVVANRLS-----ENPNWKVLLLEAGGH 94
+ +++GGG G A + +N ++ L+EA
Sbjct: 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPR 45
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.7 bits (67), Expect = 0.47
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
DQ +++G G G + L L +E
Sbjct: 32 DQLINPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEI 71
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 30.2 bits (68), Expect = 0.49
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GG 93
++VG G AG A L+ +V +LEA GG
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG 70
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 30.2 bits (67), Expect = 0.51
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGHETEITDVPVLSLYLHKSRFD 114
EYD IV+G G +++ +S N KVL ++ GG + IT + L
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64
Query: 115 WKYRTQPG 122
+ +
Sbjct: 65 PETMGRGR 72
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.0 bits (65), Expect = 0.52
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLL 89
M ++ VVG G G ++A L + N+ V +
Sbjct: 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVTVA 35
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 30.2 bits (67), Expect = 0.61
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 52 DQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGHETEITDVPVLSLY 107
DQ+ + +YD IV+G G +++ LS + KVL ++ GG +T L
Sbjct: 4 DQETIDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEAASVT------LS 56
Query: 108 LHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTML 152
+F ++ + V K + + L +L
Sbjct: 57 QLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNIL 101
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.8 bits (68), Expect = 0.66
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
D +V+G G G ++L + +
Sbjct: 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD 42
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 29.8 bits (68), Expect = 0.67
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 58 MEYDFIVVGGGSAGNVVANR 77
M +++GGG AG A
Sbjct: 1 MVTRIVILGGGPAGYEAALV 20
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 29.5 bits (67), Expect = 0.76
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 59 EYDFIVVGGGSAG 71
Y ++VG G +G
Sbjct: 3 AYQVLIVGAGFSG 15
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 29.6 bits (67), Expect = 0.88
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 59 EYDFIVVGGGSAGNVVANRLS 79
EYD I +GGG+AG + L
Sbjct: 43 EYDAIFIGGGAAGRFGSAYLR 63
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 29.3 bits (66), Expect = 0.97
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 63 IVVGGGSAGNVVANRLSE--NPNWKVLLLE 90
+++G G+ G A + E +V L+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 29.3 bits (67), Expect = 0.97
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 59 EYDFIVVGGGSAG 71
+D I++GGG AG
Sbjct: 28 PFDVIIIGGGHAG 40
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 29.3 bits (66), Expect = 0.97
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLE 90
M +V+GGG G A L P+ K+ L+
Sbjct: 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 29.4 bits (67), Expect = 1.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 59 EYDFIVVGGGSAG 71
E+D +V+GGG AG
Sbjct: 27 EFDVVVIGGGHAG 39
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 59 EYDFIVVGGGSAG 71
YD IVVG G AG
Sbjct: 21 MYDVIVVGAGHAG 33
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
Y++IV+G +AG + L+ KVL ++
Sbjct: 5 GRYEYIVIGSEAAGVGLVRELTAA-GKKVLAVD 36
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 29.1 bits (66), Expect = 1.1
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA 91
D ++ G G G ++A L +V+++E
Sbjct: 5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQ 37
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.1 bits (66), Expect = 1.2
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 47 ETQIFDQKKLLMEYDFIVVGGGSAG-NVVANRLSENP-NWKVLLLEAGGH 94
T D K +VVG AG + L+ ++++ + +
Sbjct: 23 RTLYDDDDKDRWGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN 72
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLLLEA----GG 93
+VVG G G + L+ N ++++LE GG
Sbjct: 4 VVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGG 37
>3seb_A SEB, staphylococcal enterotoxin B; superantigen; 1.48A
{Staphylococcus aureus} SCOP: b.40.2.2 d.15.6.1 PDB:
1se4_A* 1d5x_C* 1d5z_C* 1d6e_C* 1sbb_B 1se3_A* 1d5m_C*
2seb_D* 3r8b_A 1goz_A 3gp7_A 1seb_D
Length = 238
Score = 28.2 bits (62), Expect = 1.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 39 FRYDLYDPETQIFDQKKLLMEYD 61
F YD+ FDQ K LM Y+
Sbjct: 196 FWYDMMPAPGDKFDQSKYLMMYN 218
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 28.3 bits (64), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
E D +VVG G +G RL E V ++E G
Sbjct: 16 EVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAG 49
>3p1v_A Metallo-endopeptidase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.93A {Bacteroides ovatus atcc
8483} PDB: 4df9_A*
Length = 407
Score = 28.5 bits (63), Expect = 2.2
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 40 RYDLYDPETQIFDQKKLLMEYDFIVV-------GGGSAGNVVANRLSENPNWKVLLLEAG 92
RY + + + Y+ I++ GGG N + +P +K +++
Sbjct: 237 RYLTTSRVKSVHN-ALAGIPYEHIIILANTDVYGGGGIYNSYTLTTAHHPMFKPVVVHEF 295
Query: 93 GH 94
GH
Sbjct: 296 GH 297
>1bxt_A Protein (streptococcal superantigen); bacterial superantigen, MHC
class II interaction, T cell activation, toxic
shock-like syndrome; 1.85A {Streptococcus pyogenes}
SCOP: b.40.2.2 d.15.6.1
Length = 234
Score = 27.9 bits (61), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 39 FRYDLYDPETQIFDQKKLLMEY 60
F YD+ IFDQ K LM Y
Sbjct: 193 FWYDMMPAPGAIFDQSKYLMLY 214
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.3 bits (64), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
D +V+G G G A +++ KVL +EAG
Sbjct: 9 ALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGE 42
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 28.3 bits (64), Expect = 2.2
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
YD +VVG G AG +R V EA
Sbjct: 21 SYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAAS 54
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: MSE; 2.05A {Thermoplasma acidophilum}
Length = 166
Score = 27.8 bits (61), Expect = 2.2
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 34 AALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
+ +LY + K+ YD+I +G G +A LS +
Sbjct: 44 SKVLYRAKKGTPFDAVSEGILKIAGNYDYIAIGSTEVGREIAGYLSFKTGFYTA------ 97
Query: 94 HETEITDVPV 103
TEI +
Sbjct: 98 --TEIFSLEF 105
>2bc3_A Streptavidin; T7 TAG, biotin binding protein; 1.54A {Streptomyces
avidinii} SCOP: b.61.1.1 PDB: 2wpu_A* 3pk2_A* 2qcb_A*
1stp_A*
Length = 159
Score = 27.5 bits (60), Expect = 2.4
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 134 CVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD--GNEGW-----SYEEVLPYFKKSMD 186
W+ V G + +NT + + + W + G++ + S + K ++
Sbjct: 90 TTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVN 149
Query: 187 QRNP 190
NP
Sbjct: 150 NGNP 153
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 59 EYDFIVVGGGSAGNVVA----NRLSENPNWKVLLLEAG 92
+ D +V+GGG G +A R + L+E
Sbjct: 18 QLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMN 50
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 27.9 bits (63), Expect = 2.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 58 MEYDFIVVGGGSAGNVVANR 77
+ D ++G G+AG
Sbjct: 7 INVDVAIIGTGTAGMGAYRA 26
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 28.1 bits (61), Expect = 2.7
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 63 IVVGGGSAGNVVANRLSE--NPNWKVLLLEAGGHETEITD---VPVLSLYLHKSRFDWK 116
++VGGG+AG + A+ L + V L+E+G + + D +
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDER 64
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 63 IVVGGGSAGNVVANRLSE--NPNWKVLLLE 90
++VGGG+AG + A+ L + L+E
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIE 38
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 27.8 bits (60), Expect = 2.8
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 61 DFIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGG 93
++VG G G++ A L + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 27.7 bits (61), Expect = 2.9
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 11/98 (11%)
Query: 62 FIVVGGGSAGNV------VANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDW 115
+++ GN+ N + N LL E + V +L L + W
Sbjct: 22 TVLI----EGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPK-KW 76
Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLY 153
Q T + K++ S +
Sbjct: 77 AMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCF 114
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 9/38 (23%)
Query: 59 EYDFIVVGGGSAGNVVA----NRLSENPNWKVLLLEAG 92
E D +++GGG G VA K L+E
Sbjct: 32 ELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIEMQ 64
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 27.8 bits (60), Expect = 3.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 63 IVVGGGSAGNVVANRLSE--NPNWKVLLLEAG 92
++VGGG+AG + A+ L + + LL+A
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAP 60
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 27.5 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 58 ME-YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
M+ + ++G G+AG +A L + V++LE G
Sbjct: 2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG 37
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 27.5 bits (60), Expect = 4.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 64 VVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE 97
V GGG+ + ++ + +V +L E E
Sbjct: 7 VCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAE 40
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 27.3 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL 89
E+D +VVG G AG A LSE + +
Sbjct: 18 EFDAVVVGAGGAGLRAAFGLSE-AGFNTACV 47
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 26.8 bits (60), Expect = 4.2
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 49 QIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPN 83
+K+ ++ G G G+++AN S + +
Sbjct: 11 HHMSKKQKSKY--IVIFGCGRLGSLIANLASSSGH 43
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.0 bits (60), Expect = 5.0
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 63 IVVGGGSAGNVVANRLSE--NPNWKVLLLE 90
+V+GG A L V ++
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVIN 34
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 27.1 bits (61), Expect = 5.1
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 46 PETQIFDQKKLLMEYDFIVVGGGSAG---NVVANRLSENPNWKVLLLE--AGGHETEITD 100
P T + ++D I+VG G A + + R K L++ GG TE
Sbjct: 5 PRTTSVKPGE---KFDVIIVGLGPAAYGAALYSAR----YMLKTLVIGETPGGQLTEAGI 57
Query: 101 V 101
V
Sbjct: 58 V 58
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.1 bits (59), Expect = 5.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 63 IVVGGGSAGNVVANRLSENPNWKVLL 88
+++G G V + L+ N + V +
Sbjct: 27 LLLGSGFVAQPVIDTLAANDDINVTV 52
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 27.3 bits (61), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSE-NPNWKVLLL 89
+ D +VG G AG A ++ NPN K+ L+
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALI 36
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 27.2 bits (61), Expect = 5.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 58 ME-YDFIVVGGGSAGNVVA----NRLSENPNWKVLLLEAG 92
ME D IV+GGG G +A R VL+LEA
Sbjct: 1 METKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 26.7 bits (60), Expect = 6.0
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 59 EYDFIVVGGGSAGN---VVANRLSENPNWKVLLLEAG 92
D V+G G AG +V R ++ L +
Sbjct: 6 YIDCAVIGAGPAGLNASLVLGRA----RKQIALFDNN 38
>2aq2_B SEC3, enterotoxin type C-3; T-cell receptor V beta domain,
staphlococcal enterotoxin C3, complex structure, immune
system; 1.80A {Staphylococcus aureus} SCOP: b.40.2.2
d.15.6.1 PDB: 3byy_B 3bvm_A 2aq1_B 3bzd_B 3bvz_A 3bvg_A
3byt_B 2aq3_B 1jwm_D 1i4p_A 1cqv_A 1i4q_A 1i4r_A 1i4x_A
1se2_A 1ste_A 1uns_A 2ipk_D* 1klu_D 1klg_D ...
Length = 237
Score = 26.7 bits (58), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 39 FRYDLYDPETQIFDQKKLLMEYD 61
F YD+ FDQ K LM Y+
Sbjct: 194 FWYDMMPAPGDKFDQSKYLMMYN 216
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 26.7 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 58 MEYDFIVVGGGSAGNVVANRLS 79
M YD IV+G G G V A + +
Sbjct: 24 MAYDLIVIGSGPGGYVCAIKAA 45
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 26.9 bits (60), Expect = 7.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL 89
D +V+GGG AG A + ++L
Sbjct: 5 YCDSLVIGGGLAGLRAAVATQQ-KGLSTIVL 34
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 26.4 bits (59), Expect = 8.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 58 MEYDFIVVGGGSAGNVVANRLS 79
++YD +V+G G AG A RL+
Sbjct: 3 LKYDVVVIGAGGAGYHGAFRLA 24
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 26.0 bits (58), Expect = 8.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 60 YDFIVVGGGSAG---NVVANRLSENPNWKVLLLEAGG 93
+D IVVGGG +G + R KVL+L+ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLAR----AGLKVLVLDGGR 34
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 26.3 bits (59), Expect = 8.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 58 MEYDFIVVGGGSAGNVVANR 77
++ D V+G G G V A +
Sbjct: 5 IDADVTVIGSGPGGYVAAIK 24
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 26.5 bits (59), Expect = 8.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 59 EYDFIVVGGGSAGNVVANRLSEN 81
E+D +V+G G AG A ++S++
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQS 29
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 26.3 bits (59), Expect = 9.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 59 EYDFIVVGGGSAGNVVANRLS 79
E D +++GGG G V A + +
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAA 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,625,249
Number of extensions: 212908
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 153
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)