BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7389
(731 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 179/633 (28%), Positives = 267/633 (42%), Gaps = 131/633 (20%)
Query: 111 EQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS--R 168
E D FD+I++G GSAG +A RLSE V L+EAG ++ +V L +
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE 66
Query: 169 SNIDWNYMTMPDPHACKARPNGRCYW--ARGKVMGGSSTINYMIYARGNAEDYDEWEA-M 225
S DW+Y P + NG + AR KVMGG S+ N I ED DEWEA
Sbjct: 67 SGYDWDYPIEP-------QENGNSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKY 119
Query: 226 GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKE 285
G GW + +K+ E NED + +HG G + +P D L+ A ++
Sbjct: 120 GATGWNAEAAWPLYKRLETNEDA---GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQ 176
Query: 286 KGYPERDLNAENQV---GGFI--------CGDSTNGAFIRPIRKKRKNLTILTEAHVTRI 334
G P N V F S++ ++I PI ++ +N T+LT ++
Sbjct: 177 AGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQ-ENFTLLTGLRARQL 235
Query: 335 IFDKTPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTS 394
+FD ++ + EV+ S GAI++PK+LMLSGIGP HL
Sbjct: 236 VFDAD----RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAE 291
Query: 395 LNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 453
I+ LVD VG +LQDH +G+V FE K+ ST
Sbjct: 292 HGIEVLVDSPGVGEHLQDH--PEGVV------------------QFEAKQPMVA--ESTQ 329
Query: 454 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 513
+ G+F T+ D LD PD+ H+ + P + ++ +G ++ P +
Sbjct: 330 WWEIGIFTPTE--DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNV 379
Query: 514 LKPKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVADDLKPWIKAIVKKDIVDMW 571
+SRG ++L + D P++ P++FT + D+ V VA K + I + + W
Sbjct: 380 THARSRGTVRLRSRD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRK--AREIAAQPAMAEW 436
Query: 572 NSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCG 631
+ + P V++ T + + R THN
Sbjct: 437 TG-------RELSPGVEAQTDEELQD-------------YIRKTHN-------------- 462
Query: 632 SVLTDLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQN 691
T+ HPVGT +MG +D S +D LRV GV
Sbjct: 463 ----------------------------TVYHPVGTVRMGAVEDEMSPLDPELRVKGVTG 494
Query: 692 LRVVDASIMPKIVRGNTNAPTIMIAEKAADMIK 724
LRV DAS+MP+ V N N +MI E+ AD+I+
Sbjct: 495 LRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 179/633 (28%), Positives = 267/633 (42%), Gaps = 131/633 (20%)
Query: 111 EQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS--R 168
E D FD+I++G GSAG +A RLSE V L+EAG ++ +V L +
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE 66
Query: 169 SNIDWNYMTMPDPHACKARPNGRCYW--ARGKVMGGSSTINYMIYARGNAEDYDEWEA-M 225
S DW+Y P + NG + AR KVMGG S+ N I ED DEWEA
Sbjct: 67 SGYDWDYPIEP-------QENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKY 119
Query: 226 GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKE 285
G GW + +K+ E NED + +HG G + +P D L+ A ++
Sbjct: 120 GATGWNAEAAWPLYKRLETNEDA---GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQ 176
Query: 286 KGYPERDLNAENQV---GGFI--------CGDSTNGAFIRPIRKKRKNLTILTEAHVTRI 334
G P N V F S++ ++I PI ++ +N T+LT ++
Sbjct: 177 AGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQ-ENFTLLTGLRARQL 235
Query: 335 IFDKTPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTS 394
+FD ++ + EV+ S GAI++PK+LMLSGIGP HL
Sbjct: 236 VFDAD----RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAE 291
Query: 395 LNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 453
I+ LVD VG +LQDH +G+V FE K+ ST
Sbjct: 292 HGIEVLVDSPGVGEHLQDH--PEGVV------------------QFEAKQPMVA--ESTQ 329
Query: 454 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 513
+ G+F T+ D LD PD+ H+ + P + ++ +G ++ P +
Sbjct: 330 WWEIGIFTPTE--DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNV 379
Query: 514 LKPKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVADDLKPWIKAIVKKDIVDMW 571
+SRG ++L + D P++ P++FT + D+ V VA K + I + + W
Sbjct: 380 THARSRGTVRLRSRD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRK--AREIAAQPAMAEW 436
Query: 572 NSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCG 631
+ + P V++ T + + R THN
Sbjct: 437 TG-------RELSPGVEAQTDEELQD-------------YIRKTHN-------------- 462
Query: 632 SVLTDLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQN 691
T+ HPVGT +MG +D S +D LRV GV
Sbjct: 463 ----------------------------TVYHPVGTVRMGAVEDEMSPLDPELRVKGVTG 494
Query: 692 LRVVDASIMPKIVRGNTNAPTIMIAEKAADMIK 724
LRV DAS+MP+ V N N +MI E+ AD+I+
Sbjct: 495 LRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 179/633 (28%), Positives = 266/633 (42%), Gaps = 131/633 (20%)
Query: 111 EQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLIS--R 168
E D FD+I++G GSAG +A RLSE V L+EAG ++ +V L +
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE 66
Query: 169 SNIDWNYMTMPDPHACKARPNGRCYW--ARGKVMGGSSTINYMIYARGNAEDYDEWEA-M 225
S DW+Y P + NG + AR KVMGG S+ N I ED DEWEA
Sbjct: 67 SGYDWDYPIEP-------QENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKY 119
Query: 226 GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKE 285
G GW + +K+ E NED + +HG G + +P D L+ A ++
Sbjct: 120 GATGWNAEAAWPLYKRLETNEDA---GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQ 176
Query: 286 KGYPERDLNAENQV---GGFI--------CGDSTNGAFIRPIRKKRKNLTILTEAHVTRI 334
G P N V F S++ ++I PI ++ +N T+LT ++
Sbjct: 177 AGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQ-ENFTLLTGLRARQL 235
Query: 335 IFDKTPNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTS 394
+FD ++ + EV+ S GAI++PK+LMLSGIGP HL
Sbjct: 236 VFDAD----RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAE 291
Query: 395 LNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG 453
I+ LVD VG +LQDH +G+V FE K+ ST
Sbjct: 292 HGIEVLVDSPGVGEHLQDH--PEGVV------------------QFEAKQPMVA--ESTQ 329
Query: 454 PLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL 513
+ G+F T+ D LD PD+ H+ + P + ++ +G ++ P +
Sbjct: 330 WWEIGIFTPTE--DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNV 379
Query: 514 LKPKSRGYIQLNATDPLWGPPLIFPKFFT--KKPDLDVFVADDLKPWIKAIVKKDIVDMW 571
+SRG ++L + D P++ P++FT + D+ V VA K + I + + W
Sbjct: 380 THARSRGTVRLRSRD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRK--AREIAAQPAMAEW 436
Query: 572 NSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCG 631
+ + P V++ T + + R THN
Sbjct: 437 TG-------RELSPGVEAQTDEELQD-------------YIRKTHN-------------- 462
Query: 632 SVLTDLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQN 691
T HPVGT +MG +D S +D LRV GV
Sbjct: 463 ----------------------------TAYHPVGTVRMGAVEDEMSPLDPELRVKGVTG 494
Query: 692 LRVVDASIMPKIVRGNTNAPTIMIAEKAADMIK 724
LRV DAS+MP+ V N N +MI E+ AD+I+
Sbjct: 495 LRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 177/655 (27%), Positives = 276/655 (42%), Gaps = 135/655 (20%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGL-----APLISRSNID 172
FDF+I+G G+AG +A RL+E VL++EAGI P D+P + A + S D
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRNSKYD 64
Query: 173 WNY---MTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEG 229
W Y M D + +PN RGK +GGSS++NY + G+ +D+WE G +
Sbjct: 65 WAYKTTMVRRDDYERIEKPN-----TRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKE 119
Query: 230 WGYDEVLEYFKKSED-NEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIKAWKE 285
W +D ++ Y +KS ++D +Y E G GG + D+ P L KAWK
Sbjct: 120 WTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKS 179
Query: 286 KGYPERDLNAENQVGGFI-CGDST-----NGAFIRPIRKKRKNLTILTEAHVTRIIFDKT 339
G P + + ++ G C D+ +G+F+ K + N+TI+ E H R+I ++
Sbjct: 180 MGQPLIENIYDGEMDGLTHCCDTIYRGQRSGSFL--FVKNKPNITIVPEVHSKRLIINEA 237
Query: 340 PNKHKKLV-----AKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTS 394
K + + FF EVI S G +PK+LMLSGIGP L+
Sbjct: 238 DRTCKGVTVVTAAGNELNFF---------ADREVILSQGVFETPKLLMLSGIGPTRELSR 288
Query: 395 LNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATD----RMYKKKVSDAFEYKESRCGPL 449
I T+VD + VG NL DH ++ D R K+ + Y ++R GP+
Sbjct: 289 HGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPV 348
Query: 450 ASTGPLQCGVFAKT-----KLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYY 504
S G L+ F + K A+ DP S ++ + F ++
Sbjct: 349 GS-GLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWH 407
Query: 505 -------DGITVRPILLKPKSR-GYIQLNATDPLWGPPLIFPKFFTKKPDLDV-FVADDL 555
D +TV L++P S G + LN+ DP ++P++++ F A+DL
Sbjct: 408 FPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPF------------QQPNINLNFFANDL 455
Query: 556 KPWIKAIVKKDIVDMWNSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLT----RLRIGH 611
DI+ M I S L F+ ++++V + + +
Sbjct: 456 ----------DIIAMREGIRFSYDL------------LFKGEGFKDLVESEYPWEMPLDS 493
Query: 612 TRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMG 671
+ H + + CQ A TGT ++
Sbjct: 494 DKEMHRAVLDR-----CQT-----------------------AFHPTGT-------ARLS 518
Query: 672 PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED 726
D G V D +L+VHG++ LRV DAS++P I + EK ADMIK +
Sbjct: 519 KNIDQGVV-DPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 224/468 (47%), Gaps = 59/468 (12%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI--EEPFFADVPGLAP-LISRSNIDWN 174
FD++++GAG+AG V+A RL+E VL+LEAG+ E A+ P LAP L+ S DWN
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 175 YMTMPDPHACKARPNGRCY-WARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGY 232
Y T +A NGR + RG+++GGSS+++YM+ RG+ ED+D + A+ G+EGW +
Sbjct: 63 YTT-----TAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 233 DEVLEYFKKSEDNEDKEIYHKN-----PEYHGKGGYQTVEW----LPYADKNLPVLIKAW 283
D + ++ +K+E H P HG G ++ P D+ L +
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVL-ATTQEQ 176
Query: 284 KEKGYPERDLNAENQVG--------GFICGDSTNGAFIRPIRKKRKNLTILTEAHVTRII 335
E+ + D+ + +G G S++ A++RP + R NL++L A VT+++
Sbjct: 177 SEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKLV 235
Query: 336 FDKTPNKHKKLVAKSVEFFYXXXXXXXX--XXXEVISSAGAINSPKILMLSGIGPKDHLT 393
T N + VE+ EV+ SAG++ +P +L LSGIG ++ L+
Sbjct: 236 NSGTTNGLPAF--RCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 394 SLNIKTLV-DLKVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVS---DAFEYKESRCGPL 449
S+ I T+V + VG NL DHL D +++ D ++ +R GPL
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPL 353
Query: 450 ASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITV 509
+ L A +L + + Q DP + P +A + ++
Sbjct: 354 TA---LIANHLAWLRLPSNSSI--FQTFPDPAA------GPNSAHWETIFSNQWFHPAIP 402
Query: 510 RP----------ILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDL 547
RP L+ P +RG I+L ++P + PLI P++ + + D+
Sbjct: 403 RPDTGSFMSVTNALISPVARGDIKLATSNP-FDKPLINPQYLSTEFDI 449
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 660 TIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKA 719
TI HPVGT M P+ VVD L+V GV LR+VD SI+P +T P ++ ++
Sbjct: 499 TIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQG 558
Query: 720 ADMIKED 726
AD+IK D
Sbjct: 559 ADLIKAD 565
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 192/417 (46%), Gaps = 49/417 (11%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADV--PGLAPLISRSNIDWNYM 176
D +I+G GSAG +LA RLSE +VLL+EAG EEP D+ P P + + DW+Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 177 TMPDPHACKARPNGRC-YWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGYDE 234
T +A GR +WARG+++GGSS ++ M Y RG+ D+ W +A G+ WG+DE
Sbjct: 78 T-----EAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 235 VLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLN 294
+L F+ ED H G + AD+ P L +A+ E G
Sbjct: 133 LLPVFQAIED-------HPLGGDGIHGKGGPLPIHLPADEVSP-LARAFIEAGASLGLPR 184
Query: 295 AENQVGGFICGDSTNGAFIRPIR-------------KKRKNLTILTEAHVTRIIFDKTPN 341
E G + G + N IR R + RKNLTILT + V R+ +
Sbjct: 185 LEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQV 244
Query: 342 KHKKLVAK--SVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKT 399
+ ++V + S E F +++ AGA+ SP +LM SGIGP D L + +
Sbjct: 245 RSLEVVGRQGSAEVF----------ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGC 294
Query: 400 LVDL-KVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQCG 458
L+D+ +G NLQDHL G + A K + S A+ +S + CG
Sbjct: 295 LIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGCG 354
Query: 459 VFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLK 515
V +++S P + S+ IT+P + S +S D + + P L+
Sbjct: 355 V--APIVSESFPAPAAGSAY---SLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQ 406
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 660 TIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKA 719
T HP GTC+MG DP +VVDA LR+ + NL VVDASIMP + G +A + IAE
Sbjct: 459 THHHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETF 516
Query: 720 A 720
A
Sbjct: 517 A 517
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 136/487 (27%), Positives = 197/487 (40%), Gaps = 100/487 (20%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE----PFFADVPGLAPLISRSNID 172
T D+II G G G A RL+E VL++E+G E P D+ + S++D
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFG-SSVD 77
Query: 173 WNYMTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
Y T+ A N G +GGS+ +N + R + D WE + GNEGW
Sbjct: 78 HAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 232 YDEVLEYFKKSEDNED---KEI---YHKNPEYHGKGGYQTVEWLP--YADKNLPV---LI 280
+D V Y ++E K+I ++ N HG G TV P D P+ L+
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNG--TVHAGPRDTGDDYSPIVKALM 190
Query: 281 KAWKEKGYPERDLNAENQVGGFICGDSTNGAFIRP-------IRK-----------KRKN 322
A +++G P + F CGD +G + P +R +R N
Sbjct: 191 SAVEDRGVPTKK--------DFGCGDP-HGVSMFPNTLHEDQVRSDAAREWLLPNYQRPN 241
Query: 323 LTILTEAHVTRIIFDKTPNKHKKLVAKSVEF-FYXXXXXXXXXXXEVISSAGAINSPKIL 381
L +LT +V +++ + + A VEF + EV+ +AG+ SP IL
Sbjct: 242 LQVLTGQYVGKVLLSQNGTTPR---AVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298
Query: 382 MLSGIGPKDHLTSLNIKTLVDLKVGHNLQDH--------LTSDGI-------VIAFPKTA 426
SGIG K L L I T+VDL VG NLQD +TS G F +T
Sbjct: 299 EYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETF 358
Query: 427 TDRMYKKKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDW 486
D Y +K A E ++ A + G T L IQ+ + RDW
Sbjct: 359 GD--YSEK---AHELLNTKLEQWAEEAVARGGFHNTTALL-------IQYE----NYRDW 402
Query: 487 ITNPVNASS------TNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKF 540
I N A S ++ F +D L P +RGY+ + DP P++
Sbjct: 403 IVNHNVAYSELFLDTAGVASFDVWD--------LLPFTRGYVHILDKDPYLHHFAYDPQY 454
Query: 541 FTKKPDL 547
F + DL
Sbjct: 455 FLNELDL 461
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 663 HPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 722
H VGTC M PK+ G VVD RV+GVQ LRV+D SI P + + +A K +D
Sbjct: 516 HGVGTCSMMPKE-MGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDA 574
Query: 723 IKEDW 727
I ED+
Sbjct: 575 ILEDY 579
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 142/340 (41%), Gaps = 68/340 (20%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVPGLAPLISRSNIDW 173
T+D+II G G G +A +L+E K KVL++E G E + P I + +D
Sbjct: 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83
Query: 174 NYMTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWE-AMGNEGWGY 232
NY+T+P R N GK +GGS+ IN + R + D WE G EGW +
Sbjct: 84 NYLTVP---LINNRTNNI---KAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 233 DEVLEYFKKSEDNEDKEI------YHKNPEYHGKGGYQTVE---------WLPYADKNLP 277
D + EY KK+E + N HG G TV+ W P +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNG--TVQSGARDNGQPWSPI----MK 191
Query: 278 VLIKAWKEKGYPERDLNAENQVGGFICGDSTNGAFI------RPIR-----------KKR 320
L+ G P + F+CG + I +R +R
Sbjct: 192 ALMNTVSALGVPVQQ--------DFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQR 243
Query: 321 KNLTILTEAHVTRIIFDKTPNKHKKL-----VAKSVEFFYXXXXXXXXXXXEVISSAGAI 375
NL ILT V +++F +T + + + K+V F EV+ +AG+
Sbjct: 244 SNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNF-------DVFAKHEVLLAAGSA 296
Query: 376 NSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHLTS 415
SP IL SGIG K L N+ L+DL VG N+QD T+
Sbjct: 297 ISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTT 336
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 663 HPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 722
H V +C M ++ G VVDA +V+G Q LRV+D SI P V + +A K AD
Sbjct: 520 HAVSSCSMMSRE-LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADA 578
Query: 723 IKEDW 727
I +D+
Sbjct: 579 ILDDY 583
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 51/310 (16%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAP-LISRSNIDWNY 175
++D++I+G G++GC LA LSE K+KVL+LE G +P P +++ +N
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG-------SLPTAYPNVLTADGFVYNL 76
Query: 176 MTMPDPHACKAR--PNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
D R RG+V+GG+S IN +YAR N Y A G + W D
Sbjct: 77 QQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIY---SASGVD-WDMD 132
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG-YPERD 292
V + ++ ED T+ + P + V A+ E G +P
Sbjct: 133 LVNQTYEWVED--------------------TIVYKPNSQSWQSVTKTAFLEAGVHPNHG 172
Query: 293 LNAENQVGGFICGDSTNGAFIRPI------RKKRKNLTILTEAHVTRIIFDKTPNKHKKL 346
+ +++ G I G + + R + NL + A V +IIF P L
Sbjct: 173 FSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPG----L 228
Query: 347 VAKSVEFFYXXXX---XXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 403
A V + EVI SAG I +P++L+LSG+GP+ +L+SLNI ++
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSH 288
Query: 404 K-VGHNLQDH 412
VG L D+
Sbjct: 289 PYVGQFLHDN 298
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 51/310 (16%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAP-LISRSNIDWNY 175
++D++I+G G++GC LA LSE K+KVL+LE G +P P +++ +N
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG-------SLPTAYPNVLTADGFVYNL 76
Query: 176 MTMPDPHACKAR--PNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
D R RG+V+GG+S IN +YAR N Y A G + W D
Sbjct: 77 QQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIY---SASGVD-WDMD 132
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG-YPERD 292
V + ++ ED T+ + P + V A+ E G +P
Sbjct: 133 LVNQTYEWVED--------------------TIVYKPNSQSWQSVTKTAFLEAGVHPNHG 172
Query: 293 LNAENQVGGFICGDSTNGAFIRPI------RKKRKNLTILTEAHVTRIIFDKTPNKHKKL 346
+ +++ G I G + + R + NL + A V +IIF P L
Sbjct: 173 FSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPG----L 228
Query: 347 VAKSVEFFYXXXX---XXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDL 403
A V + EVI SAG I +P++L+LSG+GP+ +L+SLNI ++
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSH 288
Query: 404 K-VGHNLQDH 412
VG L D+
Sbjct: 289 PYVGQFLHDN 298
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 44/307 (14%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAP-LISRSNIDWNY 175
++D++I+G G++GC LA LSE K+KVL+LE G +P P L++ +N
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGT-------LPTAYPNLLTSDGFIYNL 76
Query: 176 MTMPDPHACKAR--PNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYD 233
D R RG+V+GG+S IN +YAR N + + A G E W D
Sbjct: 77 QQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIF---SASGIE-WDMD 132
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKG-YPERD 292
V + + ED T+ + P + A+ E G P+
Sbjct: 133 LVNQTYDWVED--------------------TIVYKPDKQAWQSLTKTAFLEAGVLPDNG 172
Query: 293 LNAENQVGGFICGDSTNGAFIRPIRKKR------KNLTILTEAHVTRIIFDKTPNKHKKL 346
+ +++ G + G + + R + NL + A V +IIF + +
Sbjct: 173 FSLDHEAGTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHASVEKIIFSSNSSGVTAI 232
Query: 347 VAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-V 405
+ EVI SAG I SP++L+LSG+GP+ +L+SLNI ++ V
Sbjct: 233 GVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYV 292
Query: 406 GHNLQDH 412
G L D+
Sbjct: 293 GQFLHDN 299
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 144/385 (37%), Gaps = 86/385 (22%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMT 177
+D+II+GAG G + A+RLSE K KVLLLE G +AP + S +
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGL--TKFD 59
Query: 178 MPDPHACKARPNGRCYWAR------GKVMGGSSTINYMIYARGNAEDYDE---WEAMGNE 228
+P + +W + G ++GG +++N +Y N D+ W +
Sbjct: 60 IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN 119
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY 288
Y L S D +P G+ Y +++ V+ + K +GY
Sbjct: 120 HAPYTSKLSSRLPSTD---------HPSTDGQR---------YLEQSFNVVSQLLKGQGY 161
Query: 289 PERDL----NAENQVGGFICGDSTNGAFIRPIRK------KRKNLTILTEAHVTRIIFDK 338
+ + N ++ V G+ D NG P+ R N T T V+ ++ +
Sbjct: 162 NQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNG 221
Query: 339 T-------------PNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSG 385
+ PN + K VI SAGA + +IL SG
Sbjct: 222 SQILGVQTNDPTLGPNGFIPVTPKG----------------RVILSAGAFGTSRILFQSG 265
Query: 386 IGPKDHLTSLNIKTL-----------VDLKVGHNLQDHLTSDGIVIAFP-----KTATDR 429
IGP D + ++ ++L VG N QD+ S +V P + D
Sbjct: 266 IGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDN-PSINLVFTHPSIDAYENWADV 324
Query: 430 MYKKKVSDAFEYKESRCGPLASTGP 454
+ +DA +Y ++ G A P
Sbjct: 325 WSNPRPADAAQYLANQSGVFAGASP 349
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 678 SVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMI 723
+VVD+ ++V G NL +VDA I+P + GN + AE+AA I
Sbjct: 489 AVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 144/385 (37%), Gaps = 86/385 (22%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMT 177
+D+II+GAG G + A+RLSE K KVLLLE G +AP + S +
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGL--TKFD 64
Query: 178 MPDPHACKARPNGRCYWAR------GKVMGGSSTINYMIYARGNAEDYDE---WEAMGNE 228
+P + +W + G ++GG +++N +Y N D+ W +
Sbjct: 65 IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN 124
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY 288
Y L S D +P G+ Y +++ V+ + K +GY
Sbjct: 125 HAPYTSKLSSRLPSTD---------HPSTDGQR---------YLEQSFNVVSQLLKGQGY 166
Query: 289 PERDL----NAENQVGGFICGDSTNGAFIRPIRK------KRKNLTILTEAHVTRIIFDK 338
+ + N ++ V G+ D NG P+ R N T T V+ ++ +
Sbjct: 167 NQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNG 226
Query: 339 T-------------PNKHKKLVAKSVEFFYXXXXXXXXXXXEVISSAGAINSPKILMLSG 385
+ PN + K VI SAGA + +IL SG
Sbjct: 227 SQILGVQTNDPTLGPNGFIPVTPKG----------------RVILSAGAFGTSRILFQSG 270
Query: 386 IGPKDHLTSLNIKTL-----------VDLKVGHNLQDHLTSDGIVIAFP-----KTATDR 429
IGP D + ++ ++L VG N QD+ S +V P + D
Sbjct: 271 IGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDN-PSINLVFTHPSIDAYENWADV 329
Query: 430 MYKKKVSDAFEYKESRCGPLASTGP 454
+ +DA +Y ++ G A P
Sbjct: 330 WSNPRPADAAQYLANQSGVFAGASP 354
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 678 SVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMI 723
+VVD+ ++V G NL +VDA I+P + GN + AE+AA I
Sbjct: 494 AVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 96 SNEGYDKDHKNNNREEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+NE ++ + N ++E G FD++I+GAG AG VLA RL+ + +VL+++
Sbjct: 11 TNERTEQTNTTNEQQESKG---FDYLIVGAGFAGSVLAERLASSGQ-RVLIVD 59
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
HP+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 442 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 722 -MIKED 726
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
HP+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 442 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 722 -MIKED 726
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
HP+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 440 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 492
Query: 722 -MIKED 726
+IK+D
Sbjct: 493 RIIKQD 498
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
HP+G C +G DD G RV G +NL V D S++P V + +AE+ +
Sbjct: 442 HPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVE 494
Query: 722 -MIKED 726
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
P+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 442 QPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 722 -MIKED 726
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
+P+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 442 NPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 722 -MIKED 726
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
P+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 442 QPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 722 -MIKED 726
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 663 HPVGTCKMG-PKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 721
P+G C +G DD G RV G +NL V D S++P V N +AE+ +
Sbjct: 444 QPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 496
Query: 722 -MIKED 726
+IK+D
Sbjct: 497 RIIKQD 502
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D+II+G+G G V AN L ++ K KVL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNK-KVLVIE 31
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 260 KGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNAENQVGGFICGDSTNGAF 312
KGG E++P DK + +KA GYP D+ G + DS+ AF
Sbjct: 540 KGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAF 592
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 260 KGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNAENQVGGFICGDSTNGAF 312
KGG E++P DK + +KA GYP D+ G + DS+ AF
Sbjct: 541 KGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAF 593
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G + A R + +K LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G + A R + +K LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
N E+ D D +D I+IG G G + A R + +K LLLEA
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCG-LTATRDLTVAGFKTLLLEA 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,104,836
Number of Sequences: 62578
Number of extensions: 1079274
Number of successful extensions: 2217
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2143
Number of HSP's gapped (non-prelim): 55
length of query: 731
length of database: 14,973,337
effective HSP length: 106
effective length of query: 625
effective length of database: 8,340,069
effective search space: 5212543125
effective search space used: 5212543125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)