Query psy7389
Match_columns 731
No_of_seqs 378 out of 2219
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 16:58:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 7.7E-92 1.7E-96 766.5 42.3 544 113-729 53-618 (623)
2 PRK02106 choline dehydrogenase 100.0 2.9E-76 6.3E-81 677.7 48.8 514 114-728 2-536 (560)
3 TIGR01810 betA choline dehydro 100.0 1.2E-75 2.6E-80 669.1 49.1 510 119-728 1-531 (532)
4 COG2303 BetA Choline dehydroge 100.0 6E-68 1.3E-72 600.4 37.3 512 113-726 3-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 8.7E-65 1.9E-69 577.6 42.1 503 115-727 53-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 2.2E-48 4.7E-53 434.2 36.0 483 118-728 1-544 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 1.1E-45 2.3E-50 392.4 15.0 279 118-414 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1.9E-30 4.1E-35 245.0 11.6 144 516-719 1-144 (144)
9 TIGR03329 Phn_aa_oxid putative 99.5 8.1E-14 1.7E-18 157.1 9.7 198 117-381 24-241 (460)
10 PRK12835 3-ketosteroid-delta-1 99.4 8.5E-12 1.9E-16 143.9 20.2 67 309-382 215-282 (584)
11 PRK07121 hypothetical protein; 99.4 8.3E-12 1.8E-16 142.0 19.3 67 310-383 180-246 (492)
12 PRK12845 3-ketosteroid-delta-1 99.4 4.5E-12 9.8E-17 145.3 16.4 63 311-381 221-283 (564)
13 PRK08274 tricarballylate dehyd 99.4 1.3E-11 2.9E-16 139.6 18.7 67 312-387 136-203 (466)
14 PRK12837 3-ketosteroid-delta-1 99.4 1.5E-11 3.2E-16 140.3 18.9 64 311-382 178-241 (513)
15 PRK12844 3-ketosteroid-delta-1 99.4 5.8E-12 1.2E-16 144.7 15.3 65 310-382 211-275 (557)
16 PF00890 FAD_binding_2: FAD bi 99.3 2.8E-11 6E-16 135.0 18.5 60 313-382 147-208 (417)
17 PRK06481 fumarate reductase fl 99.3 4.7E-11 1E-15 135.9 19.0 61 313-382 196-258 (506)
18 PF01266 DAO: FAD dependent ox 99.3 2.4E-12 5.2E-17 139.8 7.4 191 119-386 1-212 (358)
19 PRK11101 glpA sn-glycerol-3-ph 99.3 2.2E-11 4.7E-16 139.8 15.6 58 320-386 161-220 (546)
20 PRK12409 D-amino acid dehydrog 99.3 2.7E-11 5.9E-16 134.8 14.2 33 118-151 2-34 (410)
21 PRK06175 L-aspartate oxidase; 99.3 9.2E-11 2E-15 130.9 17.1 50 320-377 141-190 (433)
22 PRK07843 3-ketosteroid-delta-1 99.2 1.6E-10 3.5E-15 133.0 17.3 65 312-384 213-277 (557)
23 PLN02815 L-aspartate oxidase 99.2 1.6E-10 3.5E-15 132.9 17.2 53 320-376 168-222 (594)
24 PRK07395 L-aspartate oxidase; 99.2 1.3E-10 2.9E-15 133.1 16.3 52 320-377 147-198 (553)
25 PRK00711 D-amino acid dehydrog 99.2 1.1E-10 2.4E-15 130.1 14.4 32 119-151 2-33 (416)
26 PRK08958 sdhA succinate dehydr 99.2 2.3E-10 5.1E-15 132.1 17.1 57 313-377 149-207 (588)
27 TIGR01373 soxB sarcosine oxida 99.2 7E-11 1.5E-15 131.3 12.3 36 116-151 29-65 (407)
28 PRK12834 putative FAD-binding 99.2 3.3E-10 7.1E-15 130.5 17.7 36 115-151 2-37 (549)
29 PTZ00139 Succinate dehydrogena 99.2 4.5E-10 9.7E-15 130.4 18.5 58 312-377 171-230 (617)
30 PRK06452 sdhA succinate dehydr 99.2 4.2E-10 9.2E-15 129.6 17.8 55 313-376 142-198 (566)
31 PRK12839 hypothetical protein; 99.2 2.2E-10 4.7E-15 131.9 15.3 68 659-731 500-572 (572)
32 TIGR01813 flavo_cyto_c flavocy 99.2 5E-10 1.1E-14 125.8 17.9 64 310-381 133-197 (439)
33 PLN00128 Succinate dehydrogena 99.2 5.7E-10 1.2E-14 129.6 18.8 57 313-377 193-251 (635)
34 PRK07804 L-aspartate oxidase; 99.2 7E-10 1.5E-14 127.2 19.3 58 312-377 149-211 (541)
35 PRK12842 putative succinate de 99.2 3.4E-10 7.5E-15 130.9 16.4 63 313-383 220-282 (574)
36 PRK09078 sdhA succinate dehydr 99.2 7.8E-10 1.7E-14 128.2 19.1 57 313-377 155-213 (598)
37 PTZ00306 NADH-dependent fumara 99.2 6E-10 1.3E-14 138.0 18.8 58 321-379 560-623 (1167)
38 PRK06263 sdhA succinate dehydr 99.2 6.2E-10 1.3E-14 128.0 17.6 57 313-377 140-198 (543)
39 PRK07573 sdhA succinate dehydr 99.2 1.1E-09 2.3E-14 127.7 19.7 56 313-377 176-233 (640)
40 PRK06134 putative FAD-binding 99.1 1.1E-09 2.4E-14 126.7 19.0 63 312-382 222-284 (581)
41 PRK12843 putative FAD-binding 99.1 2.1E-09 4.5E-14 124.4 20.0 63 312-382 226-288 (578)
42 PTZ00383 malate:quinone oxidor 99.1 2.3E-10 5E-15 128.7 11.0 38 114-151 42-80 (497)
43 COG0579 Predicted dehydrogenas 99.1 3.7E-10 8E-15 122.7 12.0 198 116-388 2-222 (429)
44 PRK11728 hydroxyglutarate oxid 99.1 3.7E-10 8.1E-15 124.9 12.0 35 117-151 2-37 (393)
45 TIGR01320 mal_quin_oxido malat 99.1 3.7E-10 8.1E-15 127.3 11.6 65 313-387 184-250 (483)
46 COG2081 Predicted flavoprotein 99.1 1E-09 2.2E-14 115.7 13.8 35 116-151 2-36 (408)
47 PRK08275 putative oxidoreducta 99.1 1.9E-09 4.2E-14 124.1 17.3 59 310-376 140-200 (554)
48 PRK06854 adenylylsulfate reduc 99.1 3.4E-09 7.3E-14 123.1 18.7 56 313-376 138-195 (608)
49 PRK08641 sdhA succinate dehydr 99.1 2.6E-09 5.7E-14 123.6 17.8 49 322-377 151-201 (589)
50 PRK05945 sdhA succinate dehydr 99.1 2.6E-09 5.7E-14 123.6 17.5 56 313-377 141-198 (575)
51 PRK08626 fumarate reductase fl 99.1 2.7E-09 5.8E-14 124.6 17.5 56 313-377 164-221 (657)
52 PRK07057 sdhA succinate dehydr 99.1 3.6E-09 7.8E-14 122.5 17.9 57 313-377 154-212 (591)
53 PF03486 HI0933_like: HI0933-l 99.1 2.4E-10 5.2E-15 125.4 7.8 56 313-380 115-170 (409)
54 TIGR01377 soxA_mon sarcosine o 99.1 1.8E-09 3.9E-14 118.9 14.7 33 118-151 1-33 (380)
55 TIGR00551 nadB L-aspartate oxi 99.1 4.3E-09 9.2E-14 119.6 18.1 58 312-377 133-190 (488)
56 TIGR03364 HpnW_proposed FAD de 99.1 5.7E-10 1.2E-14 122.1 10.4 33 118-151 1-33 (365)
57 PRK09231 fumarate reductase fl 99.0 2.6E-09 5.5E-14 123.5 15.8 50 320-377 146-197 (582)
58 TIGR01812 sdhA_frdA_Gneg succi 99.0 5.3E-09 1.2E-13 121.1 18.0 56 313-377 135-192 (566)
59 PRK06069 sdhA succinate dehydr 99.0 3.2E-09 6.9E-14 123.0 16.1 49 320-376 150-200 (577)
60 PRK07512 L-aspartate oxidase; 99.0 4.2E-09 9.2E-14 120.0 16.5 57 313-377 142-198 (513)
61 TIGR02061 aprA adenosine phosp 99.0 9.5E-09 2.1E-13 118.5 19.5 57 313-376 132-191 (614)
62 PRK05257 malate:quinone oxidor 99.0 2.5E-09 5.4E-14 120.8 14.2 36 116-151 4-40 (494)
63 PRK07803 sdhA succinate dehydr 99.0 5.3E-09 1.2E-13 121.8 17.1 47 323-377 166-214 (626)
64 PRK08205 sdhA succinate dehydr 99.0 7E-09 1.5E-13 120.1 17.9 60 311-377 144-207 (583)
65 TIGR01176 fum_red_Fp fumarate 99.0 5.7E-09 1.2E-13 120.4 17.0 50 320-377 145-196 (580)
66 TIGR01811 sdhA_Bsu succinate d 99.0 5.1E-09 1.1E-13 121.4 16.6 50 321-377 146-197 (603)
67 PRK09077 L-aspartate oxidase; 99.0 9E-09 1.9E-13 118.1 18.1 52 320-377 151-208 (536)
68 PRK11259 solA N-methyltryptoph 99.0 3E-09 6.6E-14 116.8 12.7 34 117-151 3-36 (376)
69 PLN02464 glycerol-3-phosphate 99.0 7.4E-09 1.6E-13 120.4 16.0 65 313-385 238-304 (627)
70 TIGR00292 thiazole biosynthesi 98.9 5E-09 1.1E-13 108.0 11.7 34 117-151 21-54 (254)
71 COG0578 GlpA Glycerol-3-phosph 98.9 2.2E-08 4.7E-13 111.3 17.4 74 320-403 176-254 (532)
72 PF01946 Thi4: Thi4 family; PD 98.9 6.8E-09 1.5E-13 101.1 11.7 34 117-151 17-50 (230)
73 PRK04176 ribulose-1,5-biphosph 98.9 5.7E-09 1.2E-13 107.9 11.9 34 117-151 25-58 (257)
74 PRK13800 putative oxidoreducta 98.9 2.3E-08 5E-13 121.3 18.9 49 321-377 156-206 (897)
75 PRK08071 L-aspartate oxidase; 98.9 1.8E-08 3.9E-13 114.9 16.8 49 321-377 142-191 (510)
76 PRK13369 glycerol-3-phosphate 98.9 1.8E-08 3.9E-13 114.9 16.3 37 114-151 3-39 (502)
77 PLN02661 Putative thiazole syn 98.9 7E-09 1.5E-13 109.9 11.9 36 116-151 91-126 (357)
78 PRK13339 malate:quinone oxidor 98.9 1.1E-08 2.3E-13 114.9 13.7 35 116-150 5-40 (497)
79 COG1635 THI4 Ribulose 1,5-bisp 98.9 3.1E-09 6.7E-14 102.6 7.7 33 117-150 30-62 (262)
80 PRK08401 L-aspartate oxidase; 98.9 4.8E-08 1E-12 110.3 18.0 33 118-151 2-34 (466)
81 KOG2820|consensus 98.9 1.7E-08 3.7E-13 103.3 11.4 66 308-384 154-219 (399)
82 PRK01747 mnmC bifunctional tRN 98.8 3.6E-09 7.8E-14 124.7 7.6 34 117-151 260-293 (662)
83 TIGR02485 CobZ_N-term precorri 98.8 3.4E-08 7.4E-13 110.6 15.0 63 311-382 127-189 (432)
84 PRK12266 glpD glycerol-3-phosp 98.8 5.3E-08 1.1E-12 111.1 16.6 37 114-151 3-39 (508)
85 COG1053 SdhA Succinate dehydro 98.8 4.4E-08 9.5E-13 111.5 13.9 50 320-376 151-202 (562)
86 COG0029 NadB Aspartate oxidase 98.8 1.8E-08 4E-13 108.6 9.2 57 311-375 138-195 (518)
87 KOG2844|consensus 98.7 3.2E-08 7E-13 109.1 10.1 197 114-387 36-253 (856)
88 PF12831 FAD_oxidored: FAD dep 98.7 8.9E-09 1.9E-13 114.9 5.9 62 313-386 96-157 (428)
89 PRK10157 putative oxidoreducta 98.7 2.7E-08 5.9E-13 111.1 9.0 34 117-151 5-38 (428)
90 COG0644 FixC Dehydrogenases (f 98.7 9.1E-08 2E-12 105.9 12.6 36 116-152 2-37 (396)
91 COG0665 DadA Glycine/D-amino a 98.7 5.5E-08 1.2E-12 107.2 10.6 35 116-151 3-37 (387)
92 COG3573 Predicted oxidoreducta 98.7 6.4E-08 1.4E-12 98.5 9.8 35 116-151 4-38 (552)
93 PRK05192 tRNA uridine 5-carbox 98.7 1.6E-07 3.5E-12 106.5 12.7 35 116-151 3-37 (618)
94 PRK10015 oxidoreductase; Provi 98.7 5.3E-08 1.1E-12 108.7 8.6 35 116-151 4-38 (429)
95 PRK13977 myosin-cross-reactive 98.6 6.4E-07 1.4E-11 100.8 14.7 66 308-377 227-294 (576)
96 PTZ00363 rab-GDP dissociation 98.5 8.3E-07 1.8E-11 98.7 13.8 39 114-153 1-39 (443)
97 KOG0042|consensus 98.5 8.5E-08 1.8E-12 103.6 4.8 52 320-378 236-289 (680)
98 COG1233 Phytoene dehydrogenase 98.5 1.3E-07 2.9E-12 107.1 6.5 36 117-153 3-38 (487)
99 PF01134 GIDA: Glucose inhibit 98.5 3E-07 6.6E-12 99.1 8.4 56 313-380 101-156 (392)
100 KOG1298|consensus 98.5 4.6E-07 9.9E-12 94.3 8.6 36 114-150 42-77 (509)
101 PF06039 Mqo: Malate:quinone o 98.4 2.7E-06 5.8E-11 92.0 13.9 85 313-423 188-272 (488)
102 PRK07364 2-octaprenyl-6-methox 98.4 2.3E-06 4.9E-11 95.5 14.1 40 111-151 12-51 (415)
103 KOG2415|consensus 98.4 4.7E-07 1E-11 94.9 7.7 73 307-387 183-269 (621)
104 KOG2853|consensus 98.4 7.3E-06 1.6E-10 84.1 15.5 41 111-151 80-123 (509)
105 PRK06185 hypothetical protein; 98.4 3.3E-06 7.2E-11 93.9 14.6 36 115-151 4-39 (407)
106 TIGR00275 flavoprotein, HI0933 98.4 2.2E-06 4.7E-11 94.9 12.2 30 121-151 1-30 (400)
107 PRK07208 hypothetical protein; 98.4 9.1E-06 2E-10 92.4 17.5 39 114-153 1-39 (479)
108 TIGR03378 glycerol3P_GlpB glyc 98.4 1.1E-05 2.4E-10 88.2 17.0 62 313-384 269-330 (419)
109 PRK06370 mercuric reductase; V 98.4 7E-06 1.5E-10 92.9 15.9 37 114-151 2-38 (463)
110 PF13738 Pyr_redox_3: Pyridine 98.4 4.9E-07 1.1E-11 90.1 5.7 64 309-385 84-147 (203)
111 COG3380 Predicted NAD/FAD-depe 98.3 1.6E-06 3.5E-11 86.6 8.9 32 119-151 3-34 (331)
112 PLN02172 flavin-containing mon 98.3 6E-06 1.3E-10 92.7 14.4 36 115-151 8-43 (461)
113 KOG2404|consensus 98.3 3.3E-06 7.2E-11 86.0 10.4 48 322-377 159-207 (477)
114 PRK05329 anaerobic glycerol-3- 98.3 8.2E-06 1.8E-10 90.2 14.4 59 313-381 265-323 (422)
115 TIGR01350 lipoamide_DH dihydro 98.3 1.5E-05 3.3E-10 90.1 15.8 33 117-150 1-33 (461)
116 PRK06416 dihydrolipoamide dehy 98.3 1.5E-05 3.4E-10 90.1 15.7 35 116-151 3-37 (462)
117 TIGR01424 gluta_reduc_2 glutat 98.2 7.5E-06 1.6E-10 92.2 12.7 33 117-150 2-34 (446)
118 TIGR02053 MerA mercuric reduct 98.2 7.9E-06 1.7E-10 92.5 12.9 33 118-151 1-33 (463)
119 PLN02985 squalene monooxygenas 98.2 1.7E-05 3.7E-10 90.4 15.5 37 114-151 40-76 (514)
120 TIGR00136 gidA glucose-inhibit 98.2 6.6E-06 1.4E-10 93.5 11.9 33 118-151 1-33 (617)
121 TIGR02023 BchP-ChlP geranylger 98.2 5.7E-06 1.2E-10 91.4 11.3 32 118-150 1-32 (388)
122 KOG4254|consensus 98.2 3.2E-06 6.9E-11 89.9 8.4 65 306-382 263-327 (561)
123 TIGR02028 ChlP geranylgeranyl 98.2 8.9E-06 1.9E-10 90.1 11.6 33 118-151 1-33 (398)
124 PRK08244 hypothetical protein; 98.2 2E-05 4.4E-10 89.9 14.9 34 117-151 2-35 (493)
125 PRK06126 hypothetical protein; 98.2 3.4E-05 7.3E-10 89.3 15.9 35 116-151 6-40 (545)
126 TIGR03377 glycerol3P_GlpA glyc 98.1 7.3E-06 1.6E-10 94.0 9.7 58 320-386 140-199 (516)
127 TIGR02352 thiamin_ThiO glycine 98.1 6.3E-06 1.4E-10 88.9 8.1 105 260-380 73-196 (337)
128 PRK06847 hypothetical protein; 98.1 4.3E-05 9.3E-10 83.9 14.9 36 115-151 2-37 (375)
129 KOG2665|consensus 98.1 1.8E-05 4E-10 80.5 10.6 205 114-388 45-268 (453)
130 PRK06183 mhpA 3-(3-hydroxyphen 98.1 3E-05 6.4E-10 89.5 13.9 35 116-151 9-43 (538)
131 COG0654 UbiH 2-polyprenyl-6-me 98.1 1.5E-05 3.3E-10 87.9 11.0 33 117-150 2-34 (387)
132 PRK06184 hypothetical protein; 98.1 2.8E-05 6.1E-10 88.9 13.4 34 117-151 3-36 (502)
133 PLN02507 glutathione reductase 98.1 1.6E-05 3.4E-10 90.6 11.0 33 116-149 24-56 (499)
134 PLN02697 lycopene epsilon cycl 98.1 2.1E-05 4.6E-10 89.3 11.6 35 115-150 106-140 (529)
135 KOG2852|consensus 98.0 2.9E-06 6.4E-11 85.2 3.6 64 312-386 153-217 (380)
136 PRK08132 FAD-dependent oxidore 98.0 8.6E-05 1.9E-09 85.9 16.2 36 115-151 21-56 (547)
137 COG1249 Lpd Pyruvate/2-oxoglut 98.0 2.3E-05 5E-10 87.1 10.9 35 115-150 2-36 (454)
138 PRK08243 4-hydroxybenzoate 3-m 98.0 2.7E-05 5.8E-10 86.2 11.5 34 117-151 2-35 (392)
139 PRK07190 hypothetical protein; 98.0 4.8E-05 1E-09 86.3 13.7 34 117-151 5-38 (487)
140 PRK06834 hypothetical protein; 98.0 5.4E-05 1.2E-09 86.0 13.7 34 117-151 3-36 (488)
141 COG0445 GidA Flavin-dependent 98.0 1.1E-05 2.4E-10 88.3 7.6 34 116-150 3-36 (621)
142 PRK11445 putative oxidoreducta 98.0 7.7E-05 1.7E-09 81.2 14.4 32 118-151 2-33 (351)
143 COG2072 TrkA Predicted flavopr 98.0 7.3E-05 1.6E-09 83.7 13.7 37 114-151 5-42 (443)
144 PRK06617 2-octaprenyl-6-methox 98.0 6.1E-05 1.3E-09 82.8 12.9 33 118-151 2-34 (374)
145 PF13450 NAD_binding_8: NAD(P) 98.0 8.5E-06 1.8E-10 65.9 4.5 30 122-152 1-30 (68)
146 PRK05675 sdhA succinate dehydr 98.0 0.00011 2.3E-09 85.2 15.4 58 312-377 131-190 (570)
147 PRK07538 hypothetical protein; 97.9 7.4E-05 1.6E-09 83.3 12.8 32 119-151 2-33 (413)
148 PRK07588 hypothetical protein; 97.9 0.00014 3E-09 80.5 13.2 32 119-151 2-33 (391)
149 COG2509 Uncharacterized FAD-de 97.9 0.00023 5E-09 76.7 14.0 209 112-375 13-229 (486)
150 COG1231 Monoamine oxidase [Ami 97.8 0.00022 4.8E-09 77.2 13.6 36 116-152 6-41 (450)
151 PF00743 FMO-like: Flavin-bind 97.8 0.00013 2.9E-09 83.2 12.1 32 119-151 3-34 (531)
152 PLN00093 geranylgeranyl diphos 97.8 2.4E-05 5.1E-10 87.8 5.4 35 116-151 38-72 (450)
153 PRK15317 alkyl hydroperoxide r 97.8 0.00015 3.3E-09 83.1 12.1 35 115-150 209-243 (517)
154 PF01494 FAD_binding_3: FAD bi 97.8 2.3E-05 4.9E-10 84.9 5.1 34 117-151 1-34 (356)
155 PRK06116 glutathione reductase 97.8 2.4E-05 5.2E-10 88.3 5.1 35 115-150 2-36 (450)
156 TIGR02032 GG-red-SF geranylger 97.8 2.4E-05 5.2E-10 82.5 4.7 33 118-151 1-33 (295)
157 KOG1399|consensus 97.8 0.00015 3.1E-09 80.5 10.9 34 117-151 6-39 (448)
158 TIGR01421 gluta_reduc_1 glutat 97.7 2.2E-05 4.7E-10 88.4 4.2 33 117-150 2-34 (450)
159 PRK05976 dihydrolipoamide dehy 97.7 2.4E-05 5.3E-10 88.7 4.5 36 114-150 1-36 (472)
160 PRK08773 2-octaprenyl-3-methyl 97.7 4E-05 8.8E-10 84.7 5.1 36 115-151 4-39 (392)
161 PRK07818 dihydrolipoamide dehy 97.7 3.8E-05 8.1E-10 87.0 4.7 34 116-150 3-36 (466)
162 PRK08020 ubiF 2-octaprenyl-3-m 97.6 4.3E-05 9.3E-10 84.5 4.8 35 116-151 4-38 (391)
163 TIGR02730 carot_isom carotene 97.6 4.3E-05 9.3E-10 87.2 4.8 59 312-382 234-292 (493)
164 PLN02463 lycopene beta cyclase 97.6 7E-05 1.5E-09 83.8 6.4 35 116-151 27-61 (447)
165 PRK08010 pyridine nucleotide-d 97.6 4.8E-05 1E-09 85.5 4.9 34 117-151 3-36 (441)
166 PRK07494 2-octaprenyl-6-methox 97.6 5.1E-05 1.1E-09 83.8 5.0 35 116-151 6-40 (388)
167 PRK09897 hypothetical protein; 97.6 0.00097 2.1E-08 76.0 15.3 34 118-151 2-36 (534)
168 COG0562 Glf UDP-galactopyranos 97.6 5.8E-05 1.3E-09 77.5 4.8 36 118-154 2-37 (374)
169 PTZ00058 glutathione reductase 97.6 4.8E-05 1E-09 87.4 4.7 33 117-150 48-80 (561)
170 KOG2311|consensus 97.6 0.00012 2.6E-09 78.5 7.1 35 115-150 26-60 (679)
171 PF04820 Trp_halogenase: Trypt 97.6 0.00023 5E-09 80.0 9.9 55 307-373 154-208 (454)
172 PRK09126 hypothetical protein; 97.6 5.2E-05 1.1E-09 83.8 4.5 34 117-151 3-36 (392)
173 PRK07608 ubiquinone biosynthes 97.6 6E-05 1.3E-09 83.2 4.9 34 117-151 5-38 (388)
174 PRK08013 oxidoreductase; Provi 97.6 6.4E-05 1.4E-09 83.4 5.0 34 117-151 3-36 (400)
175 PRK06115 dihydrolipoamide dehy 97.6 6.5E-05 1.4E-09 85.1 4.9 33 117-150 3-35 (466)
176 TIGR03143 AhpF_homolog putativ 97.6 6.5E-05 1.4E-09 86.8 4.9 36 115-151 2-37 (555)
177 PRK06467 dihydrolipoamide dehy 97.6 7E-05 1.5E-09 84.9 4.9 36 115-151 2-37 (471)
178 PRK05714 2-octaprenyl-3-methyl 97.5 6.9E-05 1.5E-09 83.3 4.7 34 117-151 2-35 (405)
179 COG0492 TrxB Thioredoxin reduc 97.5 7.4E-05 1.6E-09 79.0 4.4 35 116-151 2-37 (305)
180 TIGR00031 UDP-GALP_mutase UDP- 97.5 8.4E-05 1.8E-09 80.9 4.9 35 118-153 2-36 (377)
181 TIGR01816 sdhA_forward succina 97.5 0.00097 2.1E-08 77.2 14.0 59 310-377 122-182 (565)
182 PRK08850 2-octaprenyl-6-methox 97.5 7.8E-05 1.7E-09 82.9 4.8 34 116-150 3-36 (405)
183 PRK07251 pyridine nucleotide-d 97.5 8.4E-05 1.8E-09 83.5 5.1 34 117-151 3-36 (438)
184 PRK07045 putative monooxygenas 97.5 8.2E-05 1.8E-09 82.2 4.8 35 116-151 4-38 (388)
185 PLN02546 glutathione reductase 97.5 7.2E-05 1.6E-09 86.0 4.4 34 115-149 77-110 (558)
186 PRK13748 putative mercuric red 97.5 8.5E-05 1.8E-09 86.3 5.0 34 116-150 97-130 (561)
187 PRK05249 soluble pyridine nucl 97.5 8.9E-05 1.9E-09 83.9 5.0 35 116-151 4-38 (461)
188 COG1232 HemY Protoporphyrinoge 97.5 0.0004 8.6E-09 76.7 9.8 33 120-153 3-37 (444)
189 PRK08849 2-octaprenyl-3-methyl 97.5 8.9E-05 1.9E-09 81.8 4.9 34 117-151 3-36 (384)
190 KOG1335|consensus 97.5 0.00086 1.9E-08 70.5 11.3 35 116-151 38-72 (506)
191 TIGR01988 Ubi-OHases Ubiquinon 97.5 9.6E-05 2.1E-09 81.3 4.6 32 119-151 1-32 (385)
192 KOG0029|consensus 97.5 0.00013 2.9E-09 82.2 5.7 37 116-153 14-50 (501)
193 PRK06327 dihydrolipoamide dehy 97.5 0.0001 2.2E-09 83.7 4.8 34 115-149 2-35 (475)
194 TIGR02733 desat_CrtD C-3',4' d 97.5 0.00011 2.4E-09 83.9 4.9 65 307-380 232-298 (492)
195 PTZ00367 squalene epoxidase; P 97.4 0.00011 2.3E-09 84.5 4.7 35 116-151 32-66 (567)
196 TIGR01292 TRX_reduct thioredox 97.4 0.00012 2.6E-09 77.5 4.5 33 118-151 1-33 (300)
197 PTZ00052 thioredoxin reductase 97.4 0.00013 2.7E-09 83.3 4.8 34 116-150 4-37 (499)
198 PRK07333 2-octaprenyl-6-methox 97.4 0.00012 2.7E-09 81.1 4.6 34 118-151 2-36 (403)
199 PTZ00153 lipoamide dehydrogena 97.4 0.00011 2.3E-09 85.8 4.2 34 116-150 115-148 (659)
200 TIGR01790 carotene-cycl lycope 97.4 0.00013 2.9E-09 80.5 4.6 32 119-151 1-32 (388)
201 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00012 2.6E-09 82.2 4.3 33 118-151 1-37 (437)
202 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.00014 3.1E-09 80.0 4.7 32 119-151 1-33 (382)
203 TIGR03197 MnmC_Cterm tRNA U-34 97.4 0.00033 7.2E-09 77.2 7.6 56 311-381 139-194 (381)
204 PRK06292 dihydrolipoamide dehy 97.4 0.00016 3.4E-09 81.9 4.8 33 117-150 3-35 (460)
205 PRK14694 putative mercuric red 97.4 0.00016 3.4E-09 82.0 4.7 35 116-151 5-39 (468)
206 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 0.00016 3.6E-09 79.8 4.5 34 117-151 2-35 (390)
207 TIGR02734 crtI_fam phytoene de 97.4 0.00015 3.2E-09 83.1 4.2 61 310-382 222-282 (502)
208 PF05834 Lycopene_cycl: Lycope 97.3 0.00017 3.7E-09 79.2 4.4 32 119-151 1-34 (374)
209 PRK08163 salicylate hydroxylas 97.3 0.0002 4.3E-09 79.3 4.8 35 116-151 3-37 (396)
210 KOG2960|consensus 97.3 0.0006 1.3E-08 65.8 7.3 34 117-150 76-110 (328)
211 PLN02268 probable polyamine ox 97.3 0.00022 4.9E-09 80.0 4.9 34 119-153 2-35 (435)
212 TIGR01423 trypano_reduc trypan 97.3 0.00021 4.6E-09 81.0 4.7 35 116-150 2-36 (486)
213 COG2907 Predicted NAD/FAD-bind 97.3 0.0026 5.6E-08 66.2 11.7 34 117-152 8-41 (447)
214 PRK11883 protoporphyrinogen ox 97.3 0.00024 5.2E-09 80.0 4.6 34 119-153 2-37 (451)
215 PRK08294 phenol 2-monooxygenas 97.3 0.00045 9.7E-09 81.0 6.9 37 114-151 29-66 (634)
216 PRK07233 hypothetical protein; 97.2 0.00027 5.8E-09 79.2 4.8 34 119-153 1-34 (434)
217 TIGR01789 lycopene_cycl lycope 97.2 0.00029 6.3E-09 77.1 4.7 33 119-151 1-34 (370)
218 PRK07236 hypothetical protein; 97.2 0.0003 6.4E-09 77.7 4.7 34 117-151 6-39 (386)
219 PRK05732 2-octaprenyl-6-methox 97.2 0.00031 6.7E-09 77.7 4.8 34 117-150 3-38 (395)
220 PRK12809 putative oxidoreducta 97.2 0.0092 2E-07 70.3 17.3 35 117-152 310-344 (639)
221 PF13434 K_oxygenase: L-lysine 97.2 0.0014 3E-08 70.8 9.4 35 117-151 2-36 (341)
222 PRK10262 thioredoxin reductase 97.2 0.00033 7.2E-09 75.2 4.6 35 115-150 4-38 (321)
223 PLN02576 protoporphyrinogen ox 97.2 0.00036 7.7E-09 79.8 5.1 37 117-153 12-48 (496)
224 PRK06753 hypothetical protein; 97.2 0.00032 7E-09 77.0 4.4 32 119-151 2-33 (373)
225 PRK06996 hypothetical protein; 97.2 0.00037 8E-09 77.3 4.9 36 115-151 9-48 (398)
226 PF07992 Pyr_redox_2: Pyridine 97.1 0.00053 1.1E-08 68.0 4.7 32 119-151 1-32 (201)
227 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00047 1E-08 75.5 4.4 33 118-151 3-35 (436)
228 COG3349 Uncharacterized conser 97.1 0.00048 1E-08 75.9 4.3 33 120-153 3-35 (485)
229 PLN02568 polyamine oxidase 97.0 0.00064 1.4E-08 78.0 5.3 37 116-153 4-45 (539)
230 PLN02676 polyamine oxidase 97.0 0.00062 1.3E-08 77.3 5.0 36 117-153 26-62 (487)
231 PRK14727 putative mercuric red 97.0 0.00074 1.6E-08 76.7 5.5 35 116-151 15-49 (479)
232 TIGR00562 proto_IX_ox protopor 97.0 0.00062 1.3E-08 77.1 4.9 37 117-153 2-41 (462)
233 TIGR01438 TGR thioredoxin and 97.0 0.00062 1.3E-08 77.3 4.6 33 117-150 2-34 (484)
234 TIGR01372 soxA sarcosine oxida 97.0 0.00082 1.8E-08 82.8 5.7 63 315-387 359-422 (985)
235 PRK05868 hypothetical protein; 97.0 0.00072 1.6E-08 74.2 4.6 32 119-151 3-34 (372)
236 PLN02927 antheraxanthin epoxid 97.0 0.00096 2.1E-08 77.5 5.6 37 114-151 78-114 (668)
237 TIGR03140 AhpF alkyl hydropero 96.9 0.00085 1.8E-08 77.0 4.6 34 115-149 210-243 (515)
238 COG3075 GlpB Anaerobic glycero 96.9 0.00095 2.1E-08 68.9 4.3 34 117-151 2-35 (421)
239 PRK12416 protoporphyrinogen ox 96.9 0.00095 2E-08 75.6 4.5 35 119-153 3-42 (463)
240 TIGR03452 mycothione_red mycot 96.8 0.00091 2E-08 75.4 4.2 31 117-150 2-32 (452)
241 TIGR02731 phytoene_desat phyto 96.8 0.0012 2.5E-08 74.6 4.7 34 119-153 1-34 (453)
242 PRK07846 mycothione reductase; 96.8 0.0011 2.4E-08 74.7 4.5 32 117-151 1-32 (451)
243 TIGR03315 Se_ygfK putative sel 96.8 0.0013 2.9E-08 79.5 5.0 36 116-152 536-571 (1012)
244 PF00996 GDI: GDP dissociation 96.7 0.0015 3.2E-08 72.2 4.8 40 114-154 1-40 (438)
245 TIGR00137 gid_trmFO tRNA:m(5)U 96.7 0.0014 3E-08 72.2 4.5 33 118-151 1-33 (433)
246 PF00070 Pyr_redox: Pyridine n 96.7 0.0025 5.5E-08 53.2 5.1 31 120-151 2-32 (80)
247 KOG2614|consensus 96.7 0.0014 3E-08 70.1 4.3 33 117-150 2-34 (420)
248 COG1252 Ndh NADH dehydrogenase 96.7 0.018 3.9E-07 62.9 12.9 35 119-153 5-40 (405)
249 PRK06475 salicylate hydroxylas 96.7 0.0014 3.1E-08 72.6 4.5 33 118-151 3-35 (400)
250 PRK12831 putative oxidoreducta 96.7 0.0021 4.5E-08 72.7 5.6 35 116-151 139-173 (464)
251 PF06100 Strep_67kDa_ant: Stre 96.6 0.035 7.6E-07 61.4 14.1 56 316-375 216-273 (500)
252 KOG4716|consensus 96.5 0.0024 5.2E-08 66.0 4.3 35 115-150 17-51 (503)
253 PRK07845 flavoprotein disulfid 96.5 0.0022 4.8E-08 72.6 4.5 32 119-151 3-34 (466)
254 PRK06912 acoL dihydrolipoamide 96.5 0.0022 4.8E-08 72.4 4.5 33 119-152 2-34 (458)
255 PLN02529 lysine-specific histo 96.5 0.0029 6.3E-08 74.6 5.5 37 116-153 159-195 (738)
256 COG1148 HdrA Heterodisulfide r 96.5 0.0027 5.9E-08 68.8 4.6 36 117-153 124-159 (622)
257 TIGR01316 gltA glutamate synth 96.5 0.0032 7E-08 70.9 5.4 35 116-151 132-166 (449)
258 PRK12810 gltD glutamate syntha 96.5 0.0036 7.8E-08 71.0 5.8 37 116-153 142-178 (471)
259 TIGR02732 zeta_caro_desat caro 96.5 0.0028 6E-08 71.9 4.7 64 313-381 225-289 (474)
260 PLN02328 lysine-specific histo 96.5 0.0042 9E-08 73.7 6.2 37 116-153 237-273 (808)
261 TIGR03219 salicylate_mono sali 96.5 0.0028 6E-08 70.7 4.6 32 119-151 2-34 (414)
262 PLN02612 phytoene desaturase 96.4 0.0032 6.9E-08 73.0 5.2 36 117-153 93-128 (567)
263 PRK12779 putative bifunctional 96.3 0.0034 7.3E-08 76.6 4.8 36 117-153 306-341 (944)
264 COG3634 AhpF Alkyl hydroperoxi 96.3 0.046 9.9E-07 57.1 12.1 57 320-384 402-460 (520)
265 PRK06567 putative bifunctional 96.3 0.0049 1.1E-07 73.6 5.8 35 116-151 382-416 (1028)
266 PRK09754 phenylpropionate diox 96.3 0.032 6.8E-07 61.9 11.8 33 118-151 145-177 (396)
267 PRK12775 putative trifunctiona 96.3 0.0039 8.5E-08 76.7 4.9 37 116-153 429-465 (1006)
268 KOG0405|consensus 96.3 0.0053 1.1E-07 63.9 4.9 35 115-150 18-52 (478)
269 PRK04965 NADH:flavorubredoxin 96.2 0.033 7.1E-07 61.3 11.6 57 320-388 195-251 (377)
270 PRK12769 putative oxidoreducta 96.2 0.0053 1.1E-07 72.6 5.5 35 116-151 326-360 (654)
271 PLN02487 zeta-carotene desatur 96.2 0.0065 1.4E-07 70.0 5.9 36 117-153 75-110 (569)
272 PRK11749 dihydropyrimidine deh 96.2 0.0049 1.1E-07 69.7 4.9 34 117-151 140-173 (457)
273 PRK09853 putative selenate red 96.2 0.0045 9.7E-08 74.8 4.7 36 116-152 538-573 (1019)
274 PRK12778 putative bifunctional 96.1 0.0063 1.4E-07 73.1 5.6 35 116-151 430-464 (752)
275 PRK07818 dihydrolipoamide dehy 96.1 0.041 8.8E-07 62.4 11.8 32 119-151 174-205 (466)
276 PLN02852 ferredoxin-NADP+ redu 96.0 0.0097 2.1E-07 67.2 5.8 37 117-153 26-63 (491)
277 PRK09564 coenzyme A disulfide 95.9 0.063 1.4E-06 60.4 12.1 33 118-151 150-182 (444)
278 KOG0685|consensus 95.9 0.0096 2.1E-07 64.8 5.1 38 116-153 20-57 (498)
279 PLN03000 amine oxidase 95.9 0.0086 1.9E-07 71.2 5.0 37 116-153 183-219 (881)
280 PRK14989 nitrite reductase sub 95.8 0.044 9.6E-07 66.3 10.9 58 320-387 199-256 (847)
281 PRK08255 salicylyl-CoA 5-hydro 95.8 0.0081 1.8E-07 72.2 4.6 34 119-152 2-36 (765)
282 PRK12814 putative NADPH-depend 95.8 0.011 2.4E-07 69.7 5.5 35 117-152 193-227 (652)
283 TIGR02374 nitri_red_nirB nitri 95.8 0.058 1.3E-06 65.1 11.6 56 320-387 194-249 (785)
284 PRK05976 dihydrolipoamide dehy 95.7 0.075 1.6E-06 60.4 11.8 32 119-151 182-213 (472)
285 PRK15317 alkyl hydroperoxide r 95.7 0.095 2.1E-06 60.2 12.7 57 320-384 399-457 (517)
286 TIGR03140 AhpF alkyl hydropero 95.7 0.11 2.4E-06 59.7 12.9 55 321-383 401-457 (515)
287 PRK12770 putative glutamate sy 95.7 0.014 3.1E-07 63.5 5.4 34 117-151 18-51 (352)
288 TIGR01316 gltA glutamate synth 95.6 0.13 2.8E-06 58.1 13.1 31 119-150 274-304 (449)
289 TIGR01318 gltD_gamma_fam gluta 95.6 0.013 2.8E-07 66.4 4.9 35 116-151 140-174 (467)
290 PLN02976 amine oxidase 95.6 0.013 2.8E-07 72.3 5.0 37 116-153 692-728 (1713)
291 PRK06912 acoL dihydrolipoamide 95.6 0.09 2E-06 59.5 11.5 32 119-151 172-203 (458)
292 TIGR01317 GOGAT_sm_gam glutama 95.5 0.017 3.7E-07 65.7 5.6 34 117-151 143-176 (485)
293 PRK06115 dihydrolipoamide dehy 95.5 0.1 2.3E-06 59.1 11.9 32 119-151 176-207 (466)
294 PRK10262 thioredoxin reductase 95.5 0.18 3.9E-06 54.0 13.0 58 320-386 197-257 (321)
295 TIGR01421 gluta_reduc_1 glutat 95.4 0.1 2.3E-06 58.8 11.4 32 119-151 168-199 (450)
296 PRK06327 dihydrolipoamide dehy 95.4 0.1 2.2E-06 59.3 11.4 32 119-151 185-216 (475)
297 KOG3855|consensus 95.4 0.016 3.5E-07 61.9 4.2 37 115-151 34-73 (481)
298 PTZ00188 adrenodoxin reductase 95.3 0.019 4.1E-07 64.1 4.8 36 118-153 40-75 (506)
299 KOG1276|consensus 95.3 0.021 4.5E-07 61.4 4.7 38 117-154 11-49 (491)
300 TIGR01292 TRX_reduct thioredox 95.2 0.23 5E-06 52.3 12.7 55 321-384 190-246 (300)
301 TIGR03385 CoA_CoA_reduc CoA-di 95.0 0.21 4.6E-06 55.8 12.1 33 118-151 138-170 (427)
302 PRK12831 putative oxidoreducta 95.0 0.27 5.9E-06 55.6 12.9 31 119-150 283-313 (464)
303 TIGR01438 TGR thioredoxin and 94.9 0.19 4.1E-06 57.2 11.5 31 119-150 182-212 (484)
304 PRK12771 putative glutamate sy 94.9 0.034 7.5E-07 64.6 5.6 36 116-152 136-171 (564)
305 PRK14727 putative mercuric red 94.9 0.27 5.9E-06 55.9 12.8 31 119-150 190-220 (479)
306 PRK13984 putative oxidoreducta 94.8 0.033 7.3E-07 65.3 5.4 36 115-151 281-316 (604)
307 PTZ00058 glutathione reductase 94.7 0.15 3.1E-06 59.0 10.1 33 118-151 238-270 (561)
308 PRK09754 phenylpropionate diox 94.4 0.043 9.4E-07 60.8 4.6 63 311-387 190-252 (396)
309 PRK13512 coenzyme A disulfide 94.3 0.045 9.7E-07 61.5 4.6 59 312-387 194-252 (438)
310 PTZ00318 NADH dehydrogenase-li 94.3 0.054 1.2E-06 60.6 5.2 36 117-153 10-45 (424)
311 PRK09564 coenzyme A disulfide 94.3 0.043 9.2E-07 61.8 4.4 63 311-387 195-257 (444)
312 KOG4405|consensus 94.2 0.047 1E-06 58.1 4.1 39 114-153 5-43 (547)
313 PRK14694 putative mercuric red 94.1 0.42 9.1E-06 54.2 12.1 31 119-150 180-210 (468)
314 PRK08010 pyridine nucleotide-d 94.1 0.34 7.4E-06 54.5 11.1 32 119-151 160-191 (441)
315 COG0493 GltD NADPH-dependent g 93.9 0.052 1.1E-06 60.7 3.9 33 118-151 124-156 (457)
316 PRK12770 putative glutamate sy 93.8 0.4 8.7E-06 52.1 10.6 31 119-150 174-205 (352)
317 KOG1439|consensus 93.8 0.035 7.5E-07 59.2 2.1 40 114-154 1-40 (440)
318 COG1206 Gid NAD(FAD)-utilizing 93.5 0.061 1.3E-06 55.9 3.3 32 119-151 5-36 (439)
319 PRK12779 putative bifunctional 92.9 0.8 1.7E-05 56.3 12.3 31 119-150 449-479 (944)
320 COG5044 MRS6 RAB proteins gera 92.7 0.15 3.3E-06 53.9 4.8 37 117-154 6-42 (434)
321 KOG3851|consensus 92.6 0.11 2.4E-06 53.8 3.6 37 115-151 37-74 (446)
322 PRK04965 NADH:flavorubredoxin 92.6 0.13 2.8E-06 56.5 4.5 34 118-151 3-37 (377)
323 PF13434 K_oxygenase: L-lysine 92.6 0.33 7.3E-06 52.5 7.6 38 114-151 187-225 (341)
324 PRK11749 dihydropyrimidine deh 92.5 0.97 2.1E-05 51.1 11.6 32 118-150 274-306 (457)
325 TIGR01372 soxA sarcosine oxida 92.5 1 2.3E-05 55.9 12.7 32 118-150 318-350 (985)
326 TIGR03169 Nterm_to_SelD pyridi 92.5 0.13 2.9E-06 56.1 4.4 34 120-153 2-37 (364)
327 KOG1800|consensus 92.4 0.15 3.3E-06 54.1 4.4 36 117-152 20-56 (468)
328 PF02558 ApbA: Ketopantoate re 92.4 0.16 3.5E-06 47.8 4.3 31 120-151 1-31 (151)
329 PRK12810 gltD glutamate syntha 92.3 0.96 2.1E-05 51.3 11.2 59 320-386 341-411 (471)
330 TIGR01318 gltD_gamma_fam gluta 92.1 1.4 3E-05 50.0 12.2 33 118-151 283-316 (467)
331 TIGR03862 flavo_PP4765 unchara 92.1 0.43 9.4E-06 52.1 7.7 88 277-380 57-145 (376)
332 COG0446 HcaD Uncharacterized N 92.0 0.16 3.6E-06 56.0 4.6 34 117-151 136-169 (415)
333 PF13454 NAD_binding_9: FAD-NA 92.0 0.16 3.4E-06 48.3 3.8 31 121-151 1-35 (156)
334 KOG0399|consensus 91.8 0.18 3.8E-06 60.1 4.3 36 117-153 1785-1820(2142)
335 PF03721 UDPG_MGDP_dh_N: UDP-g 91.7 0.2 4.3E-06 49.1 4.1 31 120-151 3-33 (185)
336 PRK12778 putative bifunctional 91.4 1.4 3.1E-05 53.1 11.9 31 119-150 572-603 (752)
337 PRK12769 putative oxidoreducta 91.4 1.6 3.6E-05 51.7 12.2 31 119-150 470-501 (654)
338 PF01210 NAD_Gly3P_dh_N: NAD-d 91.3 0.22 4.8E-06 47.4 4.0 31 120-151 2-32 (157)
339 PF02737 3HCDH_N: 3-hydroxyacy 91.1 0.27 5.9E-06 47.9 4.4 31 120-151 2-32 (180)
340 KOG1346|consensus 90.9 0.75 1.6E-05 49.4 7.6 64 316-392 402-465 (659)
341 KOG1336|consensus 90.5 1.6 3.4E-05 48.2 9.9 54 320-383 267-320 (478)
342 KOG0404|consensus 90.2 0.26 5.7E-06 48.5 3.3 33 117-150 8-40 (322)
343 PRK12814 putative NADPH-depend 90.0 2.2 4.7E-05 50.5 11.5 33 118-151 324-357 (652)
344 COG0569 TrkA K+ transport syst 89.6 0.38 8.2E-06 48.7 4.1 32 119-151 2-33 (225)
345 PRK05708 2-dehydropantoate 2-r 89.4 0.39 8.5E-06 51.1 4.2 32 119-151 4-35 (305)
346 KOG2755|consensus 89.3 0.29 6.3E-06 49.5 2.9 32 120-151 2-34 (334)
347 PF13738 Pyr_redox_3: Pyridine 89.3 0.44 9.6E-06 47.0 4.3 33 118-151 168-200 (203)
348 COG4529 Uncharacterized protei 89.3 0.39 8.4E-06 53.1 4.1 35 118-152 2-38 (474)
349 PRK07251 pyridine nucleotide-d 89.2 0.45 9.7E-06 53.5 4.8 32 119-151 159-190 (438)
350 KOG2403|consensus 88.8 0.44 9.5E-06 53.1 4.1 34 116-150 54-87 (642)
351 COG1252 Ndh NADH dehydrogenase 88.6 0.34 7.4E-06 53.1 3.1 37 117-153 155-203 (405)
352 TIGR01350 lipoamide_DH dihydro 88.6 0.5 1.1E-05 53.5 4.6 33 118-151 171-203 (461)
353 PRK06249 2-dehydropantoate 2-r 88.5 0.54 1.2E-05 50.2 4.6 32 119-151 7-38 (313)
354 PRK07846 mycothione reductase; 88.4 0.56 1.2E-05 52.9 4.8 33 118-151 167-199 (451)
355 PRK06467 dihydrolipoamide dehy 88.2 0.54 1.2E-05 53.4 4.6 32 119-151 176-207 (471)
356 COG1249 Lpd Pyruvate/2-oxoglut 88.2 0.67 1.4E-05 52.0 5.2 34 119-153 175-208 (454)
357 TIGR02053 MerA mercuric reduct 88.1 0.56 1.2E-05 53.1 4.7 33 118-151 167-199 (463)
358 PRK06129 3-hydroxyacyl-CoA deh 87.9 0.55 1.2E-05 50.1 4.2 32 119-151 4-35 (308)
359 PRK06370 mercuric reductase; V 87.4 0.68 1.5E-05 52.4 4.8 33 118-151 172-204 (463)
360 PRK06416 dihydrolipoamide dehy 86.9 0.75 1.6E-05 52.0 4.8 32 119-151 174-205 (462)
361 PRK01438 murD UDP-N-acetylmura 86.8 0.73 1.6E-05 52.4 4.7 32 119-151 18-49 (480)
362 PRK12921 2-dehydropantoate 2-r 86.7 0.7 1.5E-05 49.0 4.2 30 120-150 3-32 (305)
363 PRK05249 soluble pyridine nucl 86.7 0.79 1.7E-05 51.8 4.8 33 118-151 176-208 (461)
364 PRK06522 2-dehydropantoate 2-r 86.5 0.78 1.7E-05 48.6 4.4 30 120-150 3-32 (304)
365 PRK13512 coenzyme A disulfide 86.3 0.76 1.7E-05 51.6 4.4 32 119-151 150-181 (438)
366 TIGR02374 nitri_red_nirB nitri 86.1 0.75 1.6E-05 55.7 4.4 34 120-153 1-36 (785)
367 PRK07066 3-hydroxybutyryl-CoA 85.9 0.9 2E-05 48.6 4.4 31 120-151 10-40 (321)
368 TIGR02730 carot_isom carotene 85.9 1.2 2.7E-05 50.8 5.9 35 118-153 1-35 (493)
369 TIGR03452 mycothione_red mycot 85.9 0.89 1.9E-05 51.3 4.7 33 118-151 170-202 (452)
370 PRK08293 3-hydroxybutyryl-CoA 85.8 0.92 2E-05 47.8 4.4 32 119-151 5-36 (287)
371 PRK07819 3-hydroxybutyryl-CoA 85.6 0.93 2E-05 47.7 4.4 32 119-151 7-38 (286)
372 PRK14989 nitrite reductase sub 85.6 0.96 2.1E-05 55.0 5.0 35 119-153 5-42 (847)
373 PRK06292 dihydrolipoamide dehy 85.5 0.97 2.1E-05 51.1 4.7 32 119-151 171-202 (460)
374 TIGR01424 gluta_reduc_2 glutat 85.4 1 2.2E-05 50.8 4.8 32 119-151 168-199 (446)
375 PRK09260 3-hydroxybutyryl-CoA 85.4 0.92 2E-05 47.8 4.2 31 120-151 4-34 (288)
376 PF01593 Amino_oxidase: Flavin 85.2 0.78 1.7E-05 50.5 3.8 26 127-153 1-26 (450)
377 PRK02705 murD UDP-N-acetylmura 85.1 0.95 2.1E-05 51.2 4.4 31 120-151 3-33 (459)
378 PTZ00153 lipoamide dehydrogena 84.9 1.1 2.3E-05 52.9 4.8 32 119-151 314-345 (659)
379 PF02254 TrkA_N: TrkA-N domain 84.6 1.4 3.1E-05 39.1 4.5 31 120-151 1-31 (116)
380 TIGR02732 zeta_caro_desat caro 84.4 1.8 3.9E-05 49.1 6.3 34 119-153 1-34 (474)
381 PRK08229 2-dehydropantoate 2-r 84.3 1.1 2.3E-05 48.5 4.2 31 120-151 5-35 (341)
382 PRK04148 hypothetical protein; 84.1 1.1 2.3E-05 41.3 3.4 31 119-151 19-49 (134)
383 PRK12775 putative trifunctiona 84.1 9 0.0002 47.7 12.5 32 118-150 572-604 (1006)
384 COG1004 Ugd Predicted UDP-gluc 84.1 1.1 2.5E-05 48.2 4.1 31 120-151 3-33 (414)
385 PRK07845 flavoprotein disulfid 84.0 1.3 2.8E-05 50.2 4.9 32 119-151 179-210 (466)
386 PRK06116 glutathione reductase 83.8 1.3 2.8E-05 49.9 4.8 33 118-151 168-200 (450)
387 TIGR03143 AhpF_homolog putativ 83.8 1.2 2.5E-05 51.8 4.5 33 118-151 144-176 (555)
388 PF13241 NAD_binding_7: Putati 83.7 0.98 2.1E-05 39.6 3.0 33 117-150 7-39 (103)
389 PRK07530 3-hydroxybutyryl-CoA 83.7 1.3 2.8E-05 46.8 4.4 32 119-151 6-37 (292)
390 PLN02507 glutathione reductase 83.6 1.3 2.9E-05 50.6 4.7 32 119-151 205-236 (499)
391 PRK06718 precorrin-2 dehydroge 83.5 1.4 3.1E-05 43.7 4.4 32 118-150 11-42 (202)
392 PRK06035 3-hydroxyacyl-CoA deh 83.4 1.3 2.9E-05 46.7 4.4 31 120-151 6-36 (291)
393 TIGR02354 thiF_fam2 thiamine b 83.4 1.4 3.1E-05 43.6 4.3 33 117-150 21-54 (200)
394 TIGR02733 desat_CrtD C-3',4' d 83.3 1.9 4E-05 49.3 5.9 35 118-153 2-36 (492)
395 PRK06719 precorrin-2 dehydroge 83.2 1.6 3.4E-05 41.6 4.3 30 118-148 14-43 (157)
396 PRK14106 murD UDP-N-acetylmura 83.2 1.3 2.8E-05 49.9 4.4 33 118-151 6-38 (450)
397 PF01488 Shikimate_DH: Shikima 83.1 1.6 3.5E-05 40.3 4.3 33 117-150 12-45 (135)
398 PLN02546 glutathione reductase 82.8 1.4 3E-05 51.0 4.6 32 119-151 254-285 (558)
399 PF00899 ThiF: ThiF family; I 82.7 1.9 4E-05 39.8 4.6 33 118-151 3-36 (135)
400 PRK05808 3-hydroxybutyryl-CoA 81.9 1.5 3.3E-05 46.0 4.2 32 119-151 5-36 (282)
401 COG3486 IucD Lysine/ornithine 81.9 1.8 3.9E-05 46.8 4.6 38 114-151 2-39 (436)
402 PRK13748 putative mercuric red 81.8 1.5 3.3E-05 50.9 4.5 31 119-150 272-302 (561)
403 PRK07688 thiamine/molybdopteri 81.7 1.8 3.8E-05 46.8 4.5 34 117-151 24-58 (339)
404 PRK14620 NAD(P)H-dependent gly 81.6 1.7 3.6E-05 46.7 4.4 30 120-150 3-32 (326)
405 COG1748 LYS9 Saccharopine dehy 81.6 1.7 3.7E-05 47.4 4.3 32 119-151 3-35 (389)
406 TIGR01470 cysG_Nterm siroheme 81.5 1.8 4E-05 43.1 4.3 31 119-150 11-41 (205)
407 COG2072 TrkA Predicted flavopr 81.4 2.9 6.2E-05 47.0 6.3 34 118-152 176-209 (443)
408 PRK12475 thiamine/molybdopteri 81.3 1.8 3.8E-05 46.8 4.4 34 117-151 24-58 (338)
409 PRK15116 sulfur acceptor prote 81.3 1.9 4E-05 44.8 4.3 34 117-151 30-64 (268)
410 TIGR02734 crtI_fam phytoene de 81.1 2.6 5.6E-05 48.2 6.0 33 120-153 1-33 (502)
411 cd01075 NAD_bind_Leu_Phe_Val_D 80.6 2.1 4.7E-05 42.4 4.4 31 119-150 30-60 (200)
412 PRK11064 wecC UDP-N-acetyl-D-m 80.3 1.9 4.1E-05 48.1 4.3 31 120-151 6-36 (415)
413 cd01483 E1_enzyme_family Super 80.1 2.4 5.2E-05 39.4 4.3 31 120-151 2-33 (143)
414 COG1893 ApbA Ketopantoate redu 79.9 1.9 4E-05 45.9 3.9 31 120-151 3-33 (307)
415 PRK14618 NAD(P)H-dependent gly 79.8 2.4 5.2E-05 45.6 4.9 32 119-151 6-37 (328)
416 PTZ00318 NADH dehydrogenase-li 79.7 2.1 4.6E-05 47.8 4.6 33 119-151 175-220 (424)
417 PTZ00052 thioredoxin reductase 79.5 2 4.2E-05 49.2 4.2 31 119-150 184-214 (499)
418 PLN02545 3-hydroxybutyryl-CoA 79.5 2.2 4.9E-05 45.0 4.4 31 120-151 7-37 (295)
419 TIGR03026 NDP-sugDHase nucleot 79.5 2 4.4E-05 47.8 4.3 31 120-151 3-33 (411)
420 TIGR01763 MalateDH_bact malate 79.5 2.3 4.9E-05 45.3 4.4 30 120-150 4-34 (305)
421 TIGR02731 phytoene_desat phyto 79.1 3 6.6E-05 46.9 5.6 54 313-374 219-274 (453)
422 KOG3923|consensus 78.7 2 4.4E-05 44.5 3.5 34 117-150 3-42 (342)
423 cd01080 NAD_bind_m-THF_DH_Cycl 78.6 2.9 6.2E-05 40.3 4.4 33 117-150 44-77 (168)
424 cd01487 E1_ThiF_like E1_ThiF_l 78.6 2.7 5.9E-05 40.7 4.3 31 120-151 2-33 (174)
425 TIGR01423 trypano_reduc trypan 78.5 2.3 5E-05 48.4 4.4 32 119-151 189-223 (486)
426 PRK00094 gpsA NAD(P)H-dependen 78.5 2.5 5.4E-05 45.2 4.5 32 119-151 3-34 (325)
427 PRK06130 3-hydroxybutyryl-CoA 77.6 3.1 6.6E-05 44.4 4.8 32 119-151 6-37 (311)
428 PLN02487 zeta-carotene desatur 77.4 3.5 7.5E-05 47.8 5.4 63 315-381 303-365 (569)
429 TIGR00518 alaDH alanine dehydr 77.0 2.9 6.2E-05 45.8 4.4 33 117-150 167-199 (370)
430 PLN02353 probable UDP-glucose 76.8 2.8 6.1E-05 47.4 4.4 32 120-151 4-36 (473)
431 TIGR02356 adenyl_thiF thiazole 76.6 3.3 7.1E-05 41.2 4.4 34 117-151 21-55 (202)
432 PF01262 AlaDh_PNT_C: Alanine 76.6 3.6 7.8E-05 39.5 4.5 33 118-151 21-53 (168)
433 TIGR02279 PaaC-3OHAcCoADH 3-hy 76.3 2.9 6.3E-05 47.7 4.4 31 120-151 8-38 (503)
434 TIGR01915 npdG NADPH-dependent 76.1 3.4 7.4E-05 41.6 4.4 31 120-151 3-34 (219)
435 PRK12549 shikimate 5-dehydroge 75.9 3.3 7.1E-05 43.6 4.4 33 118-151 128-161 (284)
436 TIGR03736 PRTRC_ThiF PRTRC sys 75.9 3.4 7.3E-05 42.3 4.3 35 116-150 10-54 (244)
437 cd05292 LDH_2 A subgroup of L- 75.5 3.5 7.5E-05 44.0 4.5 32 119-151 2-35 (308)
438 PRK12548 shikimate 5-dehydroge 74.8 3.4 7.4E-05 43.6 4.2 32 119-151 128-160 (289)
439 PRK02472 murD UDP-N-acetylmura 74.8 3.3 7.1E-05 46.6 4.3 31 120-151 8-38 (447)
440 cd00401 AdoHcyase S-adenosyl-L 74.7 3.7 8E-05 45.4 4.5 33 118-151 203-235 (413)
441 COG1250 FadB 3-hydroxyacyl-CoA 74.6 3.2 7E-05 43.9 3.8 30 120-150 6-35 (307)
442 PRK11730 fadB multifunctional 74.4 3.2 7E-05 49.6 4.3 31 120-151 316-346 (715)
443 PRK08268 3-hydroxy-acyl-CoA de 74.2 3.6 7.7E-05 47.1 4.4 31 120-151 10-40 (507)
444 PRK07531 bifunctional 3-hydrox 74.2 3.5 7.7E-05 47.0 4.4 32 119-151 6-37 (495)
445 PRK14619 NAD(P)H-dependent gly 74.1 4.2 9.1E-05 43.3 4.7 32 119-151 6-37 (308)
446 TIGR02437 FadB fatty oxidation 74.1 3.3 7.2E-05 49.4 4.3 32 119-151 315-346 (714)
447 cd05311 NAD_bind_2_malic_enz N 73.9 3.7 8E-05 41.6 4.0 33 118-151 26-61 (226)
448 TIGR02355 moeB molybdopterin s 73.5 4.7 0.0001 41.3 4.7 34 117-151 24-58 (240)
449 PRK08017 oxidoreductase; Provi 73.3 4.3 9.4E-05 41.4 4.5 30 120-150 5-35 (256)
450 PRK08328 hypothetical protein; 73.2 4.4 9.5E-05 41.2 4.3 33 117-150 27-60 (231)
451 COG0686 Ald Alanine dehydrogen 73.2 3.3 7.1E-05 43.2 3.4 34 117-151 168-201 (371)
452 PRK07417 arogenate dehydrogena 73.0 3.9 8.4E-05 42.9 4.0 31 120-151 3-33 (279)
453 COG4716 Myosin-crossreactive a 72.9 8.2 0.00018 41.3 6.2 56 316-375 236-291 (587)
454 COG3634 AhpF Alkyl hydroperoxi 72.6 3 6.6E-05 44.0 3.0 34 117-151 354-387 (520)
455 cd05291 HicDH_like L-2-hydroxy 72.3 4.6 0.0001 43.0 4.5 31 120-151 3-35 (306)
456 TIGR02853 spore_dpaA dipicolin 72.0 4.6 0.0001 42.5 4.3 33 118-151 152-184 (287)
457 PRK08644 thiamine biosynthesis 71.8 4.9 0.00011 40.3 4.3 34 117-151 28-62 (212)
458 PRK05690 molybdopterin biosynt 71.8 5 0.00011 41.2 4.4 34 117-151 32-66 (245)
459 COG1087 GalE UDP-glucose 4-epi 71.7 5 0.00011 41.9 4.2 30 120-150 3-33 (329)
460 cd00757 ThiF_MoeB_HesA_family 71.6 5 0.00011 40.7 4.3 33 117-150 21-54 (228)
461 cd01339 LDH-like_MDH L-lactate 71.1 4.4 9.5E-05 43.0 3.9 31 120-151 1-32 (300)
462 PLN02172 flavin-containing mon 70.7 4.4 9.5E-05 45.8 4.0 32 119-151 206-237 (461)
463 PF00670 AdoHcyase_NAD: S-aden 70.7 5.1 0.00011 38.1 3.8 33 118-151 24-56 (162)
464 cd01486 Apg7 Apg7 is an E1-lik 70.5 5.5 0.00012 41.9 4.4 31 120-151 2-33 (307)
465 PRK08223 hypothetical protein; 70.4 5.4 0.00012 41.8 4.3 34 117-151 27-61 (287)
466 KOG2495|consensus 70.2 2.5 5.4E-05 46.0 1.8 34 118-151 219-265 (491)
467 TIGR02441 fa_ox_alpha_mit fatt 69.9 4.5 9.8E-05 48.5 4.1 32 119-151 337-368 (737)
468 PRK06223 malate dehydrogenase; 69.9 5.6 0.00012 42.3 4.5 32 119-151 4-36 (307)
469 PLN02520 bifunctional 3-dehydr 69.8 5.1 0.00011 46.1 4.3 31 119-150 381-411 (529)
470 KOG2304|consensus 69.6 4.5 9.7E-05 40.2 3.2 35 116-151 10-44 (298)
471 cd01484 E1-2_like Ubiquitin ac 69.6 5.9 0.00013 40.3 4.3 30 120-150 2-32 (234)
472 PF03807 F420_oxidored: NADP o 69.3 7.7 0.00017 33.0 4.5 31 120-151 2-36 (96)
473 cd05191 NAD_bind_amino_acid_DH 69.3 8.3 0.00018 32.4 4.5 32 118-149 24-55 (86)
474 cd01485 E1-1_like Ubiquitin ac 69.2 6.4 0.00014 39.0 4.4 33 117-150 19-52 (198)
475 PF03446 NAD_binding_2: NAD bi 69.2 6.7 0.00014 37.4 4.4 32 119-151 3-34 (163)
476 cd01078 NAD_bind_H4MPT_DH NADP 69.1 6.4 0.00014 38.7 4.4 32 118-150 29-61 (194)
477 PRK06057 short chain dehydroge 69.0 6.1 0.00013 40.4 4.4 32 119-151 9-41 (255)
478 TIGR01381 E1_like_apg7 E1-like 68.8 5.7 0.00012 46.0 4.4 34 117-151 338-372 (664)
479 PRK09496 trkA potassium transp 68.7 5.4 0.00012 44.8 4.3 32 119-151 2-33 (453)
480 COG2085 Predicted dinucleotide 68.6 5.8 0.00013 39.3 3.8 30 120-150 4-33 (211)
481 TIGR00507 aroE shikimate 5-deh 68.6 6.2 0.00013 41.1 4.4 32 119-151 119-150 (270)
482 PRK05562 precorrin-2 dehydroge 68.5 6.7 0.00014 39.5 4.3 30 118-148 26-55 (223)
483 cd01490 Ube1_repeat2 Ubiquitin 68.4 5.8 0.00013 44.1 4.2 31 120-151 2-38 (435)
484 PRK07774 short chain dehydroge 68.3 6.5 0.00014 39.9 4.5 31 119-150 8-39 (250)
485 PRK15057 UDP-glucose 6-dehydro 68.3 5.5 0.00012 43.9 4.1 30 120-151 3-32 (388)
486 PTZ00082 L-lactate dehydrogena 68.2 6.3 0.00014 42.2 4.4 34 118-152 7-41 (321)
487 TIGR00936 ahcY adenosylhomocys 68.1 6.5 0.00014 43.4 4.5 34 117-151 195-228 (406)
488 cd01492 Aos1_SUMO Ubiquitin ac 67.9 7.1 0.00015 38.6 4.4 33 117-150 21-54 (197)
489 PRK07326 short chain dehydroge 67.6 6.7 0.00014 39.5 4.3 30 120-150 9-39 (237)
490 TIGR01505 tartro_sem_red 2-hyd 67.4 5.7 0.00012 41.8 3.9 31 120-151 2-32 (291)
491 PRK00258 aroE shikimate 5-dehy 67.1 6.9 0.00015 41.0 4.4 33 118-151 124-157 (278)
492 KOG1371|consensus 67.0 5.6 0.00012 41.9 3.5 29 120-149 5-34 (343)
493 PRK08177 short chain dehydroge 66.9 7.7 0.00017 38.8 4.6 31 120-151 4-35 (225)
494 PRK06505 enoyl-(acyl carrier p 66.3 7.2 0.00016 40.6 4.3 30 120-150 10-42 (271)
495 PRK11154 fadJ multifunctional 66.1 6.3 0.00014 47.1 4.3 32 119-151 311-343 (708)
496 PRK05476 S-adenosyl-L-homocyst 66.0 7.4 0.00016 43.2 4.5 33 118-151 213-245 (425)
497 COG0451 WcaG Nucleoside-diphos 66.0 7.5 0.00016 40.9 4.5 31 120-151 3-34 (314)
498 cd01488 Uba3_RUB Ubiquitin act 66.0 7.4 0.00016 40.9 4.3 30 120-150 2-32 (291)
499 PRK07523 gluconate 5-dehydroge 65.9 7.7 0.00017 39.6 4.4 30 120-150 13-43 (255)
500 cd00755 YgdL_like Family of ac 65.8 7.7 0.00017 39.4 4.3 33 117-150 11-44 (231)
No 1
>KOG1238|consensus
Probab=100.00 E-value=7.7e-92 Score=766.45 Aligned_cols=544 Identities=46% Similarity=0.749 Sum_probs=475.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccCCCCee
Q psy7389 113 DGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRC 192 (731)
Q Consensus 113 ~~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 192 (731)
+...+||+||||||.+||++|.+|+|.|..+|||||||+..+...+.|.....++.+.++|.|.++|++..|..+.+..|
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c 132 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC 132 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence 34568999999999999999999999989999999999988777788877778888999999999999999999999999
Q ss_pred EeecceeeechhhhhcceeecCCHhhHHHHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCCCC
Q psy7389 193 YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (731)
Q Consensus 193 ~~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (731)
.|++|+++||+|.+|+|++.|+.+.||+.|++.|+++|+|+++++||+++|+...... ...++++..|++.+...++.
T Consensus 133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~--~~~~y~~~~g~~~ve~~~~~ 210 (623)
T KOG1238|consen 133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDP--ELTPYHGAGGPLLVEAGVYP 210 (623)
T ss_pred ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCc--ccCcccccCCcceecccccc
Confidence 9999999999999999999999999999999999999999999999999999876543 23448899999999999999
Q ss_pred CChHHHHHHHHHHcCCCCCCCCCCCCCCc----------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCC
Q psy7389 273 DKNLPVLIKAWKEKGYPERDLNAENQVGG----------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNK 342 (731)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~~~~~~~~~~G~----------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~ 342 (731)
.+....+.++..++|....|+|+....|+ .|+ ++..+|+.++...++|+.+..++.|++|.+|+.++
T Consensus 211 ~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~--s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~- 287 (623)
T KOG1238|consen 211 NNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRV--SLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGK- 287 (623)
T ss_pred CchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEE--EehhhhhhhhhccCccccccccceEEEEEEcCCCc-
Confidence 99999999999999988899999887776 677 89999999887657899999999999999998777
Q ss_pred CCceEEEEEEEEeC-CEEEEEEeccEEEecccCCCchHHHhhcCCCCcccccccCccceeecC-ccccccccccCceEEE
Q psy7389 343 HKKLVAKSVEFFYK-KKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVI 420 (731)
Q Consensus 343 ~~~~r~~GV~~~~~-g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~p-VG~nL~dH~~~~~~~~ 420 (731)
++.||++... +++++|+|+|+||||||||+||+|||+|||||.++|++.|||++.|+| ||+||+||+..+.+.+
T Consensus 288 ----~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~ 363 (623)
T KOG1238|consen 288 ----RAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVF 363 (623)
T ss_pred ----eEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeee
Confidence 9999999988 899999999999999999999999999999999999999999999999 9999999999854444
Q ss_pred EecCC--cchhhhhhhHHhHHHHHHcCCCCCCCCCccceeEEEeccCCC-CCCCCCeeEEecCCcccccc----c---Cc
Q psy7389 421 AFPKT--ATDRMYKKKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLAD-SLDVPDIQFHHDPMSVRDWI----T---NP 490 (731)
Q Consensus 421 ~~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~----~---~~ 490 (731)
..+.. ....+ .....+.+|.+.+.||+...+ ++..+|+++.... +.++||+++++.+..+..+- . .+
T Consensus 364 ~~~~~~~~~~~~--~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~ 440 (623)
T KOG1238|consen 364 STNPVELSLIRL--VGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGE 440 (623)
T ss_pred cCCCcccccccc--ccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcch
Confidence 43321 11122 245677889999999998776 7889999988765 44799999988777665441 0 01
Q ss_pred ccCCCCCCCCCCCCCcEEEEEeecccCCccEEEccCCCCCCCCCeeccCCCCChhHHHHHHhcchHHHHHHHHHhhhhcc
Q psy7389 491 VNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDM 570 (731)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~p~srg~V~l~~~d~~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 570 (731)
+++ ..+.+......+.++..+++|.|||+|.|.++|| ...|.|++||+.+|.|++.++++ ++.+.
T Consensus 441 ~y~--~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP-~~~P~I~~NY~~~p~Dv~~~veg-----i~~~~------- 505 (623)
T KOG1238|consen 441 IYQ--ALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNP-RDNPLITPNYFTHPEDVATLVEG-----IRTII------- 505 (623)
T ss_pred HHH--HhhhhhhcCceeEEeehhcCCCccceEEecCCCC-CcCceeccCcCCCHHHHHHHHHH-----HHHHH-------
Confidence 111 1223334445688888999999999999999999 99999999999999999999999 99999
Q ss_pred cCCCCCCccccccccccccccccccccchhhhhhhhhhccccceecccccccCCCCccCCCCcccccccccccCCCHHHH
Q psy7389 571 WNSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYW 650 (731)
Q Consensus 571 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 650 (731)
++ .++++|++ +++ + +...+.|+|.. ....++++|
T Consensus 506 -----------~l-----~~s~af~~------------~~~-r------~~~~~~~~c~~-----------~~~~sd~yw 539 (623)
T KOG1238|consen 506 -----------RL-----SNSKAFQR------------FGA-R------LWKKPVPGCDL-----------LAFLSDAYW 539 (623)
T ss_pred -----------HH-----HcCHHHHH------------hcc-h------hccccCCCccc-----------ccCCCHHHH
Confidence 88 88999998 666 3 33446788864 457899999
Q ss_pred HHHHHhhcCcccccccccccCCCCCCCCccCCCCeEeccCCeEEeecCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhcc
Q psy7389 651 ACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWIL 729 (731)
Q Consensus 651 ~~~~~~~~~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~lTi~AlA~r~A~~I~~~~~~ 729 (731)
+||+|....|.||++|||+||+..|+++|||+++||||++||||+|||+||.+|++||..|+||||||+|+.|++++..
T Consensus 540 ~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~ 618 (623)
T KOG1238|consen 540 ECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA 618 (623)
T ss_pred HHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999888999999999999999999999999999999999999999999999999999764
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=2.9e-76 Score=677.66 Aligned_cols=514 Identities=41% Similarity=0.599 Sum_probs=394.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC---CCccCCCCcccc-ccCCCCCCCcccCCCccccccCCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE---PFFADVPGLAPL-ISRSNIDWNYMTMPDPHACKARPN 189 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~ 189 (731)
+..+|||||||||++|+++|.+||+.+|++|||||+|+.. ......|..... +....++|.|.+.|++. ..+
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~ 77 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNN 77 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCC
Confidence 3457999999999999999999999449999999999753 222334432211 22345689888887765 346
Q ss_pred CeeEeecceeeechhhhhcceeecCCHhhHHHHHHc-CCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeec
Q psy7389 190 GRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEW 268 (731)
Q Consensus 190 ~~~~~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~ 268 (731)
+.+.+.+|+++||+|.+|++++.|+.+.||+.|+.. |.++|+|++++|||+++|.++.. ..++++..|++.+..
T Consensus 78 ~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~-----~~~~~g~~gp~~~~~ 152 (560)
T PRK02106 78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG-----EDDYRGGDGPLSVTR 152 (560)
T ss_pred CeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC-----CccccCCCCCEEEeC
Confidence 788999999999999999999999999999999987 88899999999999999988632 234677889998876
Q ss_pred C-CCCCChHHHHHHHHHHcCCCC-CCCCCCCCCCc----------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEe
Q psy7389 269 L-PYADKNLPVLIKAWKEKGYPE-RDLNAENQVGG----------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIF 336 (731)
Q Consensus 269 ~-~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~G~----------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~ 336 (731)
. ....+..+.+.++++++|++. .+.+++..+|+ .|. ++..+||.++.+ +.|++|++++.|++|++
T Consensus 153 ~~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~--s~~~~~l~~a~~-~~nl~i~~~a~V~rI~~ 229 (560)
T PRK02106 153 GKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRW--SAARAYLDPALK-RPNLTIVTHALTDRILF 229 (560)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEE--ChHHHhhccccC-CCCcEEEcCCEEEEEEE
Confidence 5 445677788999999999986 45665544443 455 888899998887 88999999999999999
Q ss_pred cCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCCcccccccCccceeecC-ccccccccccC
Q psy7389 337 DKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTS 415 (731)
Q Consensus 337 ~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~p-VG~nL~dH~~~ 415 (731)
+ ++ +++||++.+.+...++.+.|+||||||+|+||+|||+|||||.+.|++.||++++|+| ||+||+||+..
T Consensus 230 ~--~~-----~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~ 302 (560)
T PRK02106 230 E--GK-----RAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV 302 (560)
T ss_pred e--CC-----eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc
Confidence 8 35 8999999876544445444589999999999999999999999999999999999999 99999999998
Q ss_pred ceEEEEecCC-cchhhh-h-hhHHhHHHHHHcCCCCCCCCCccceeEEEeccCCCCCCCCCeeEEecCCcccccccCccc
Q psy7389 416 DGIVIAFPKT-ATDRMY-K-KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVN 492 (731)
Q Consensus 416 ~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 492 (731)
.+.+.++.+ ...... . .......+|+..+.|++.... ....+|.+.... ...|+++..+.+..+....
T Consensus 303 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~----- 373 (560)
T PRK02106 303 -YIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNH-FEAGGFIRSRAG--VDWPNIQYHFLPVAIRYDG----- 373 (560)
T ss_pred -eEEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccc-cceeeEEecCCC--CCCCCeEEEEeeccccccC-----
Confidence 678877664 111100 0 011123456666777765322 333445543221 1346665544332211000
Q ss_pred CCCCCCCCCCCCCcEEEEEeecccCCccEEEccCCCCCCCCCeeccCCCCChhHHHHHHhcchHHHHHHHHHhhhhcccC
Q psy7389 493 ASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDMWN 572 (731)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~p~srg~V~l~~~d~~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (731)
.. ......+++...+++|.|+|+|+|+++|| ++.|.|+++|+.++.|++.+.++ ++.++
T Consensus 374 ---~~---~~~~~~~~~~~~~~~P~srG~V~L~s~d~-~~~P~i~~~y~~~~~D~~~~~~~-----~~~~~--------- 432 (560)
T PRK02106 374 ---SN---AVKGHGFQAHVGPMRSPSRGSVKLKSADP-RAHPSILFNYMSTEQDWREFRDA-----IRLTR--------- 432 (560)
T ss_pred ---CC---CCCCCeEEEEEEecCCcceEEEEEeCCCC-ccCceEccccCCCHHHHHHHHHH-----HHHHH---------
Confidence 00 01122455556678899999999999999 99999999999999999999999 99888
Q ss_pred CCCCCccccccccccccccccccccchhhhhhhhhhccccceecccccccCCCCccCCCCcccccccccccCCCHHHHHH
Q psy7389 573 SIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYWAC 652 (731)
Q Consensus 573 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (731)
++ +.+.++.. +...+ ..|+.. ..++++|++
T Consensus 433 ---------~i-----~~~~~~~~------------~~~~~----------~~p~~~--------------~~~~~~~~~ 462 (560)
T PRK02106 433 ---------EI-----MAQPALDP------------YRGRE----------ISPGAD--------------VQTDEEIDA 462 (560)
T ss_pred ---------HH-----HcChhhhh------------ccccc----------cCCCcc--------------cCCHHHHHH
Confidence 77 54444443 22211 122211 246788999
Q ss_pred HHHhhcCcccccccccccCCCCCCCCccCCCCeEeccCCeEEeecCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhc
Q psy7389 653 IAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 728 (731)
Q Consensus 653 ~~~~~~~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~lTi~AlA~r~A~~I~~~~~ 728 (731)
|++....+++|++||||||+ |+ +||||++|||||++||||+|+||||+.+++||++||||||+|+||+|+++++
T Consensus 463 ~i~~~~~~~~H~~GTcrMG~-d~-~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~~ 536 (560)
T PRK02106 463 FVREHAETAYHPSCTCKMGT-DP-MAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRTP 536 (560)
T ss_pred HHHhccCcCcccCCCeecCC-CC-CeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccCC
Confidence 99999889999999999997 55 8999999999999999999999999999999999999999999999999773
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.2e-75 Score=669.08 Aligned_cols=510 Identities=38% Similarity=0.546 Sum_probs=393.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCC-CeEEEEecCCCCC---CccCCCCcccc-ccCCCCCCCcccCCCccccccCCCCeeE
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIEEP---FFADVPGLAPL-ISRSNIDWNYMTMPDPHACKARPNGRCY 193 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 193 (731)
||||||||++|+++|.+||++ | .+|||||+|+... .....|..... +....++|.|.+.|+.. +.++.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~ 75 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVG 75 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEe
Confidence 899999999999999999999 6 7999999997532 22334432211 22344689998888775 4577899
Q ss_pred eecceeeechhhhhcceeecCCHhhHHHHHH-cCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCCCC
Q psy7389 194 WARGKVMGGSSTINYMIYARGNAEDYDEWEA-MGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (731)
Q Consensus 194 ~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (731)
+.+|+++||+|.+|++++.|+.+.||+.|++ .|.++|+|++++|||+++|..+.. ..++++..|++.+..++..
T Consensus 76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~-----~~~~~g~~G~~~v~~~~~~ 150 (532)
T TIGR01810 76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG-----EKPYRGHDGPIKVRRGPAD 150 (532)
T ss_pred eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC-----CcccCCCCCCEEEecCCCC
Confidence 9999999999999999999999999999998 588999999999999999988653 2356888999999887777
Q ss_pred CChHHHHHHHHHHcCCCC-CCCCCCCCCCc----------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCC
Q psy7389 273 DKNLPVLIKAWKEKGYPE-RDLNAENQVGG----------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPN 341 (731)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~-~~~~~~~~~G~----------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~ 341 (731)
.+..+.+.++++++|++. .++++....|+ .|. ++..+||.++.+ +.|++|++++.|++|+++ ++
T Consensus 151 ~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~--s~~~~~l~~a~~-r~nl~i~~~~~V~rI~~~--~~ 225 (532)
T TIGR01810 151 NPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRV--SAARAYLHPAMK-RPNLEVQTRAFVTKINFE--GN 225 (532)
T ss_pred CHHHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEE--cHHHHHhhhhcc-CCCeEEEeCCEEEEEEec--CC
Confidence 777888999999999986 45554433333 355 888999998887 889999999999999997 35
Q ss_pred CCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCCcccccccCccceeecC-ccccccccccCceEEE
Q psy7389 342 KHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVI 420 (731)
Q Consensus 342 ~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~p-VG~nL~dH~~~~~~~~ 420 (731)
+++||++..++...++.+.|+||||||+|+||+||++|||||.+.|+++||++++|+| ||+||+||+.+ .+.+
T Consensus 226 -----ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~ 299 (532)
T TIGR01810 226 -----RATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQH 299 (532)
T ss_pred -----eEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEE
Confidence 8999999876544455444589999999999999999999999999999999999999 99999999998 7788
Q ss_pred EecCC-cchhhhh--hhHHhHHHHHHcCCCCCCCCCccceeEEEeccCCCCCCCCCeeEEecCCcccccccCcccCCCCC
Q psy7389 421 AFPKT-ATDRMYK--KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTN 497 (731)
Q Consensus 421 ~~~~~-~~~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (731)
.++.+ ....... .......+|.....|++... .....+|.+.... ...|++++.+.+.....+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~---------- 366 (532)
T TIGR01810 300 ACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASN-HFEGGGFVRSNDD--VDYPNIQYHFLPVAIRYDG---------- 366 (532)
T ss_pred EecCCcccccccchhhhhHHHHHHHhcCCCCcccc-ccceeEEEecCCC--CCCCCeEEEEEeeeeccCC----------
Confidence 77654 1111000 00111234555566765432 2334455544321 1346666554332111000
Q ss_pred CCCCCCCCcEEEEEeecccCCccEEEccCCCCCCCCCeeccCCCCChhHHHHHHhcchHHHHHHHHHhhhhcccCCCCCC
Q psy7389 498 MSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDMWNSIPPS 577 (731)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~p~srg~V~l~~~d~~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (731)
........+++....++|.|||+|+|+++|| .+.|.|+++|+.++.|++.+.++ ++.++
T Consensus 367 -~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp-~~~P~i~~~y~~~~~D~~~~~~~-----~~~~~-------------- 425 (532)
T TIGR01810 367 -TKAPKAHGFQVHVGPMYSNSRGHVKIKSKDP-FEKPEIVFNYMSHEEDWREFREA-----IRVTR-------------- 425 (532)
T ss_pred -CCCCCCCcEEEEEeecCCCCceEEEecCCCC-ccCceeccccCCCHHHHHHHHHH-----HHHHH--------------
Confidence 0001112355556678899999999999999 99999999999999999999999 99888
Q ss_pred ccccccccccccccccccccchhhhhhhhhhccccceecccccccCCCCccCCCCcccccccccccCCCHHHHHHHHHhh
Q psy7389 578 NKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYWACIAMQF 657 (731)
Q Consensus 578 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (731)
++ +.+.++.. +...+ ..|+. ...++++|++|++..
T Consensus 426 ----~i-----~~~~~~~~------------~~~~~----------~~p~~--------------~~~~d~~~~~~ir~~ 460 (532)
T TIGR01810 426 ----EI-----LKQKALDP------------YRGGE----------ISPGP--------------EVQTDEEIDEFVRRH 460 (532)
T ss_pred ----HH-----HcCcchhh------------ccccc----------cCCCC--------------CCCCHHHHHHHHhhh
Confidence 77 54444443 21101 11221 135788999999999
Q ss_pred cCcccccccccccCCCCCCCCccCCCCeEeccCCeEEeecCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhc
Q psy7389 658 TGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 728 (731)
Q Consensus 658 ~~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~lTi~AlA~r~A~~I~~~~~ 728 (731)
..+.+|++||||||++++++||||+++||||++||||||+||||+.+++||++|+||||+|+||+|+++.-
T Consensus 461 ~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~ 531 (532)
T TIGR01810 461 GETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKKP 531 (532)
T ss_pred cccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999756778999999999999999999999999999999999999999999999998753
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-68 Score=600.45 Aligned_cols=512 Identities=38% Similarity=0.574 Sum_probs=398.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCCC-ccCCCCccccccCC-CCCCCcccCCCccccccCCCC
Q psy7389 113 DGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF-FADVPGLAPLISRS-NIDWNYMTMPDPHACKARPNG 190 (731)
Q Consensus 113 ~~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~ 190 (731)
.+..+||+||||||.+|+++|.+|++. |++|||||+|+.... ...+|.....+... ..+|.|.+.++.. ..++
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r 77 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGR 77 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCc
Confidence 345689999999999999999999965 999999999985433 44556555444444 7899999988884 6788
Q ss_pred eeEeecceeeechhhhhcceeecCCHhhHHHHHHc-CCCCCChhhHHHHHHHhhcCCCcccccCC-CCCCCCCCceeeec
Q psy7389 191 RCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGYDEVLEYFKKSEDNEDKEIYHKN-PEYHGKGGYQTVEW 268 (731)
Q Consensus 191 ~~~~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~-~~~~g~~G~l~~~~ 268 (731)
.+.+++|+++||+|.+|++++.|+.+.||+.|... |..+|.|++++|||+++|+....... + ..+++..|++.+..
T Consensus 78 ~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~--~~~~~~g~~gp~~~~~ 155 (542)
T COG2303 78 ELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQ--DLRTWHGGGGPLPVSP 155 (542)
T ss_pred cccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCC--CCCCCcCCCCCccccC
Confidence 99999999999999999999999999999999876 77999999999999999997765321 1 34688899999887
Q ss_pred CCCCCChHHHHHHHHHHcCCCC-CCCCCCCCCCc----------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEec
Q psy7389 269 LPYADKNLPVLIKAWKEKGYPE-RDLNAENQVGG----------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFD 337 (731)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~G~----------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~ 337 (731)
.....+....+.++..++|++. .++++....|+ .|+ ++..+||.++.+ ++|++|++++.|++|+++
T Consensus 156 ~~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~--sa~~a~l~~a~~-~~nl~v~t~a~v~ri~~~ 232 (542)
T COG2303 156 PRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRW--SAARAYLKPALK-RPNLTLLTGARVRRILLE 232 (542)
T ss_pred CCCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEe--echhhcchhHhc-CCceEEecCCEEEEEEEE
Confidence 7666788889999999999987 56666554443 455 899999999988 999999999999999999
Q ss_pred CCCCCCCceEEEEEEEEeCC---EEEEEEeccEEEecccCCCchHHHhhcCCCCcccccccCccceeecC-ccccccccc
Q psy7389 338 KTPNKHKKLVAKSVEFFYKK---KLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHL 413 (731)
Q Consensus 338 ~~g~~~~~~r~~GV~~~~~g---~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~p-VG~nL~dH~ 413 (731)
. + +++||++...+ .+..+.++ +||||||+|+||+|||+||||+...+...||.++.++| ||+||+||.
T Consensus 233 ~--~-----r~~gv~~~~~~~~~~~~~~a~~-~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~ 304 (542)
T COG2303 233 G--D-----RAVGVEVEIGDGGTIETAVAAR-EVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHL 304 (542)
T ss_pred C--C-----eeEEEEEEeCCCCceEEEecCc-eEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhh
Confidence 4 5 89999998643 24444554 89999999999999999999999999999999999999 999999999
Q ss_pred cCceEEEEecCCcchhhhh---hhHHhHHHHHHcCCCCCCCCCccceeEEEeccCCCCCCCCCeeEEecCCcccccccCc
Q psy7389 414 TSDGIVIAFPKTATDRMYK---KKVSDAFEYKESRCGPLASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNP 490 (731)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 490 (731)
.. .+.+..+....+.... ........|...++|+..... .+.. |..+.... ..|+++..+.+..+...
T Consensus 305 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~g-f~~~~~~~--~~p~~~~~~~~~~~~~~---- 375 (542)
T COG2303 305 EI-YVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNH-FEGG-FVRSGPAG--EYPDGQYHFAPLPLAIR---- 375 (542)
T ss_pred hh-hhheeccCccccccccccccccccceeEEeecCCCccccc-cccc-ccccCccc--cCCCccccccccccccc----
Confidence 98 6666666543111110 011111233344666654322 2222 44444332 45666665543322110
Q ss_pred ccCCCCCCCCCCCCCcEEEEEeecccCCccEEEccCCCCCCCCCeeccCCCCChhHHHHHHhcchHHHHHHHHHhhhhcc
Q psy7389 491 VNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDM 570 (731)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~p~srg~V~l~~~d~~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 570 (731)
.......+++.....+|.|+|.|.+.+.|| ...|.|+++|+.++.|...+..+ ++..+
T Consensus 376 ---------~~~~~~~~~~~~~~~rp~srg~v~~~~~d~-~~~p~i~~~~~~~~~d~~~~~~~-----~~~~r------- 433 (542)
T COG2303 376 ---------AAGAEHGFTLHVGPMRPKSRGSVTLRSPDP-DNRPVIDPNYLSAEGDRAIFRAG-----IRLTR------- 433 (542)
T ss_pred ---------ccccCCccEEeeccCCCccccceecCCCCC-cCCcccCccccCchhHHHHHHHH-----HHHHH-------
Confidence 112345677778889999999999999999 99999999999999999999999 88888
Q ss_pred cCCCCCCccccccccccccccccccccchhhhhhhhhhccccceecccccccCCCCccCCCCcccccccccccCCCHHHH
Q psy7389 571 WNSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYW 650 (731)
Q Consensus 571 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 650 (731)
++ .....+.. +-..+ ..+.+. ..+++++
T Consensus 434 -----------~i-----~~~~~~~~------------~~~~e--------~~~~~~----------------~~~~~~~ 461 (542)
T COG2303 434 -----------EI-----IGQPALDA------------RRKAE--------LAPGPR----------------VTTDEDI 461 (542)
T ss_pred -----------HH-----hcCccchh------------hHHHh--------hcCCCc----------------cccHHHH
Confidence 66 33333332 11101 112232 3456788
Q ss_pred HHHHHhhcCcccccccccccCCCCCCCCccCCCCeEeccCCeEEeecCCCCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy7389 651 ACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED 726 (731)
Q Consensus 651 ~~~~~~~~~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~lTi~AlA~r~A~~I~~~ 726 (731)
..|++....+.+|++||||||. |+.++|+|++|||||++||||+|+|+||+++++||++||+|||+|+|++|+++
T Consensus 462 ~~~~~~~~~t~~H~~GT~rMG~-Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 462 SAAIRFLARTAYHPMGTCRMGS-DPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred HHHHHhccCccccccccccCCC-CchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 8999999999999999999995 66667777999999999999999999999999999999999999999999984
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=8.7e-65 Score=577.58 Aligned_cols=503 Identities=24% Similarity=0.309 Sum_probs=336.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCC--CccCCCCccccccCCCCCCCcccCCCccccccCCCCee
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP--FFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRC 192 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~--~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 192 (731)
...|||||||||.+||++|.+|++ +.+|||||+|+... +....+. .+.....+|.+.+.++.. ..++.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~---~~~~~~~d~~~~~~~q~~----~~~~~~ 123 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE---NFHIGLADTSPTSASQAF----ISTDGV 123 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH---hhCCcccccCCccccccc----cCCCce
Confidence 457999999999999999999999 48999999997431 1111111 122234689998888753 346778
Q ss_pred EeecceeeechhhhhcceeecCCHhhHHHHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCCCC
Q psy7389 193 YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (731)
Q Consensus 193 ~~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (731)
.+.+|++|||+|.+|+|.+.|+.+.+|+. .+|+|+.+.++|+++|+.+.. .+..
T Consensus 124 ~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~--------------------~~~~ 177 (587)
T PLN02785 124 INARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH--------------------WPKV 177 (587)
T ss_pred eccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--------------------CCCc
Confidence 99999999999999999999999999954 579999999999999875321 0112
Q ss_pred CChHHHHHHHHHHcCCCC-C----CCCCCCCCCc-------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCC
Q psy7389 273 DKNLPVLIKAWKEKGYPE-R----DLNAENQVGG-------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTP 340 (731)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~-~----~~~~~~~~G~-------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g 340 (731)
.+....+.+++.++|++. . +...+...|. .|. ++.. ++ ++.. +.|++|++++.|++|++++.+
T Consensus 178 ~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~--saa~-l~-~~~~-~~nl~Vl~~a~V~rIl~~~~~ 252 (587)
T PLN02785 178 APWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRH--TAAE-LL-AAGN-PNKLRVLLHATVQKIVFDTSG 252 (587)
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEc--CHHH-HH-hhcC-CCCeEEEeCCEEEEEEEcCCC
Confidence 445678889999999863 1 1111111111 233 4443 44 3555 789999999999999998532
Q ss_pred CCCCceEEEEEEEEe-CCEEEEE----EeccEEEecccCCCchHHHhhcCCCCcccccccCccceeecC-cccccccccc
Q psy7389 341 NKHKKLVAKSVEFFY-KKKLRRA----RAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK-VGHNLQDHLT 414 (731)
Q Consensus 341 ~~~~~~r~~GV~~~~-~g~~~~i----~A~k~VVLAAGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~p-VG~nL~dH~~ 414 (731)
.+.+++||++.+ ++...++ +++|+||||||+|+||+|||+|||||..+|++.|||+++|+| ||+||+||+.
T Consensus 253 ---~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~ 329 (587)
T PLN02785 253 ---KRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPM 329 (587)
T ss_pred ---CCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcc
Confidence 122899999976 4544443 255699999999999999999999999999999999999999 9999999999
Q ss_pred CceEEEEecCCcchhhhhhhHHhHHHHHHcCCCCCCCCC--ccceeEEEeccCCCCCCCCCe-eEEecCCcc--cccccC
Q psy7389 415 SDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTG--PLQCGVFAKTKLADSLDVPDI-QFHHDPMSV--RDWITN 489 (731)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~--~~~~~~ 489 (731)
. .+.+..+.+...... ..+.....|++.... .......+...... ..+.. .+...+... ...+..
T Consensus 330 ~-~i~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 399 (587)
T PLN02785 330 N-SIFVPSKAPVEQSLI-------QTVGITKMGVYIEASSGFGQSPDSIHCHHGI--MSAEIGQLSTIPPKQRTPEAIQA 399 (587)
T ss_pred c-ceEEEeCCCchhhhH-------hhhhhhccccceecccccccCchhhhhhccc--cccccccccccCcccccchhhhh
Confidence 8 677776654211110 111111223321000 00000000000000 00000 000000000 000000
Q ss_pred cccCCCCCCCCCCCCCcEEEEEeecccCCccEEEccCCCCCCCCCeeccCCCCChhHHHHHHhcchHHHHHHHHHhhhhc
Q psy7389 490 PVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVD 569 (731)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~srg~V~l~~~d~~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 569 (731)
.... ....+........+...+++|.|||+|+|.++|| .+.|.|+++|+.++.|++.++++ ++.++
T Consensus 400 ~~~~--~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp-~~~P~i~~ny~~~p~Dl~~~~~g-----~r~~~------ 465 (587)
T PLN02785 400 YIHR--KKNLPHEAFNGGFILEKIAGPISTGHLSLINTNV-DDNPSVTFNYFKHPQDLQRCVYG-----IRTIE------ 465 (587)
T ss_pred hccC--cccccccccccceEEEEecCCCcceEEEecCCCC-CcCCccccccCCCHHHHHHHHHH-----HHHHH------
Confidence 0000 0000000001112345678999999999999999 99999999999999999999999 99988
Q ss_pred ccCCCCCCccccccccccccccccccccchhhhhhhhhhccccceecccccccCCCCccCCCCcccccccccccCCCHHH
Q psy7389 570 MWNSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDY 649 (731)
Q Consensus 570 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 649 (731)
++ +.+.++.. +...++. + .......... ...+.......++++
T Consensus 466 ------------~i-----~~~~~~~~------------~~~~~~~-~--~~~~~~~~~~-----~~~~~~p~~~~~d~~ 508 (587)
T PLN02785 466 ------------KI-----VKTNHFTN------------FTQCDKQ-T--MEKVLNMSVK-----ANINLIPKHTNDTKS 508 (587)
T ss_pred ------------HH-----HcChhhhh------------hcccccc-c--cccccccccc-----cccccCCCCCCCHHH
Confidence 77 66665655 2110000 0 0000000000 000000011346789
Q ss_pred HHHHHHhhcCcccccccccccCCCCCCCCccCCCCeEeccCCeEEeecCCCCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q psy7389 650 WACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 727 (731)
Q Consensus 650 ~~~~~~~~~~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~lTi~AlA~r~A~~I~~~~ 727 (731)
|++|+++...+.+|++|||+|| +|||+++||||++||||||||+||..|++||++|+||||+|+|++|+++.
T Consensus 509 l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 509 LEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred HHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 59999999999999999999999999999999999999999999999874
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=2.2e-48 Score=434.21 Aligned_cols=483 Identities=17% Similarity=0.171 Sum_probs=280.6
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCCCc-------cC----------------------CCCcccc-cc
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFF-------AD----------------------VPGLAPL-IS 167 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~~~-------~~----------------------~p~~~~~-~~ 167 (731)
|||||||+|++|+++|..||++ |++|+|||+|...... .. +|..... ..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999999 9999999999755310 00 0000000 00
Q ss_pred CCCCCCCcccCCCcccccc------CCCCee-EeecceeeechhhhhcceeecCCHhhHHHHHHcCCCCC--ChhhHHHH
Q psy7389 168 RSNIDWNYMTMPDPHACKA------RPNGRC-YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGW--GYDEVLEY 238 (731)
Q Consensus 168 ~~~~~w~~~~~~~~~~~~~------~~~~~~-~~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~l~~~ 238 (731)
.....|... |....... .....+ ...+-+.+||+|.+|++.+.|..+.+. .| .+ .+| +|++++||
T Consensus 80 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~Py 153 (544)
T TIGR02462 80 LDPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWDRL 153 (544)
T ss_pred CCccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHHHH
Confidence 001112110 00000000 000011 123457899999999999999998542 11 12 589 99999999
Q ss_pred HHHhhcCCCcccccCCCCCCCCCCceeeecCCCCCChHHHHHHHHHHcCC-CC-CCCCCCCCCCc---cccCCChhhhcc
Q psy7389 239 FKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGY-PE-RDLNAENQVGG---FICGDSTNGAFI 313 (731)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~~~~~~~~~~~~~~~G~-~~-~~~~~~~~~G~---~r~~~s~~~~~L 313 (731)
|+++|++++.... .+. .+.......+.+.+.+. |. .. .....+..+++ .++ ++..+.+
T Consensus 154 Y~~Ae~~~gv~g~----~~~---------~~~~~~~~~~~~~~~~~--g~~~~~~~PlA~~~~~c~~~ak~--s~~~t~~ 216 (544)
T TIGR02462 154 YTKAESLIGTSTD----QFD---------ESIRHNLVLRKLQDEYK--GQRDFQPLPLACHRRTDPTYVEW--HSADTVF 216 (544)
T ss_pred HHHHHHHhCCCCC----cCC---------CcccchhHHHHHHHHhc--cccccccCchhhhccCCCcccee--cCCccch
Confidence 9999999886431 010 00001111222333332 32 11 11111211122 344 4444445
Q ss_pred HhhH----hcCCCeEEEcCcEEEEEEecCCC-CCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 314 RPIR----KKRKNLTILTEAHVTRIIFDKTP-NKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 314 ~~a~----~~~~g~~i~~~t~V~~I~~~~~g-~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
..+. + +.|++|++++.|++|++++++ + +|+||.+.+ +++..+|+|+ .||||||+|+||+|||+|++
T Consensus 217 ~~~~~~~~~-~~n~~l~~~a~v~~i~~d~~~~~-----~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~ 289 (544)
T TIGR02462 217 DLQPNDDAP-SERFTLLTNHRCTRLVRNETNES-----EIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGF 289 (544)
T ss_pred hhhhhhhcc-CCCEEEEcCCEEEEEEeCCCCCc-----eeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCC
Confidence 4433 3 678999999999999998654 4 799999886 5788899998 69999999999999999998
Q ss_pred CCcccccccCccceeecC-ccccccccccCceEEEEecCCcchhhhhhhHHhHHHHHHcCC-CCCCCC-CccceeEEEec
Q psy7389 387 GPKDHLTSLNIKTLVDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRC-GPLAST-GPLQCGVFAKT 463 (731)
Q Consensus 387 g~~~~l~~~gi~~~~~~p-VG~nL~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~-~~~~~~~~~~~ 463 (731)
+..... .|+..-...+ |||||+||+.. .+.+.++++..+.+... .....|..... ...... .......|..
T Consensus 290 ~~~~~p--~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 363 (544)
T TIGR02462 290 GQLGRP--DPTNPPPLLPSLGRYITEQSMT-FCQIVLSTELVDSVRSD--PRGLDWWKEKVANHMMKHPEDPLPIPFRD- 363 (544)
T ss_pred CCCcCC--CCcCCCCCCCCCCcchhcCCCc-cEEEEecchhhhhccCC--ccccccccccchhhhccccCCcccccccc-
Confidence 742211 1111110024 99999999988 67777766421111000 00001100000 000000 0000000000
Q ss_pred cCCCCCCCCCeeEEecCCc----ccccccCcccCCCCCCCCCCCCCcEEEE-EeecccCCccEEEccC--CCCCCCCCee
Q psy7389 464 KLADSLDVPDIQFHHDPMS----VRDWITNPVNASSTNMSPFAYYDGITVR-PILLKPKSRGYIQLNA--TDPLWGPPLI 536 (731)
Q Consensus 464 ~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~srg~V~l~~--~d~~~~~p~i 536 (731)
..|.. ..++. |...+.+..+.+....+.......+.+. +....|..+++|+|++ +|. +|+|.+
T Consensus 364 ------~~~~~---~~~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~-~G~P~~ 433 (544)
T TIGR02462 364 ------PEPQV---TTPFTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDT-YNMPQP 433 (544)
T ss_pred ------cCccc---ccccccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCC-CCCeeE
Confidence 00000 00000 0000000000000000000111111222 1223499999999976 588 999999
Q ss_pred ccCCCCChhHHHHHHhcchHHHHHHHHHhhhhcccCCCCCCccccccccccccccccccccchhhhhhhhhhccccceec
Q psy7389 537 FPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDMWNSIPPSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTH 616 (731)
Q Consensus 537 ~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (731)
.++|..++.|++.+..+ .+.+. ++ +.. +|+..
T Consensus 434 ~i~~~~~~~d~~~~~~~-----~~~~~------------------~i----------~~~------------~G~~~--- 465 (544)
T TIGR02462 434 TFDFRFSAADSKRARRM-----MTDMC------------------NV----------AAK------------IGGYL--- 465 (544)
T ss_pred EEEEeCCHHHHHHHHHH-----HHHHH------------------HH----------HHH------------cCCCc---
Confidence 99999999999988888 66666 54 233 33311
Q ss_pred ccccccCCCCccCCCCcccccccccccCCCHHHHHHHHHhhcCcccccccccccCCCCCCCCccCCCCeEeccCCeEEee
Q psy7389 617 NHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVD 696 (731)
Q Consensus 617 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~D 696 (731)
+... . .+ .....+.|++||||||. ++.+||||++|||||++||||+|
T Consensus 466 ---------~~~~-----------------~----~~--~~~~~~~H~~Gt~rMG~-dp~~sVvd~~~rv~g~~NL~V~d 512 (544)
T TIGR02462 466 ---------PGSL-----------------P----QF--MEPGLALHLAGTTRIGF-DEQTTVANTDSKVHNFKNLYVGG 512 (544)
T ss_pred ---------cccc-----------------c----cc--cCCCccccCCCCeecCC-CCCCceECCCCcEeCCCCeEEec
Confidence 0000 0 00 01134789999999997 67899999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhc
Q psy7389 697 ASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 728 (731)
Q Consensus 697 aSv~P~~~~~NP~lTi~AlA~r~A~~I~~~~~ 728 (731)
+|+||+.+++|||+||||||+|+|++|+++++
T Consensus 513 ~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 513 NGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred cCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998764
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.1e-45 Score=392.42 Aligned_cols=279 Identities=42% Similarity=0.656 Sum_probs=217.9
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCCCccCCC-CccccccCCCCCCCcccCCCccccccCCCCeeEeec
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVP-GLAPLISRSNIDWNYMTMPDPHACKARPNGRCYWAR 196 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~~~~~~p-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 196 (731)
|||||||||++|+++|.+||++++.+|||||||++.......+ ..........++|.+.+.++.. +.++.+.+.+
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 8999999999999999999999447999999999775433111 1122223456777777766654 5678888999
Q ss_pred ceeeechhhhhcceeecCCHhhHHHHHHc-CCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceee-ecCCCCCC
Q psy7389 197 GKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTV-EWLPYADK 274 (731)
Q Consensus 197 g~~lGG~S~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~-~~~~~~~~ 274 (731)
|+++||+|.+|++++.|+.+.||+.|... |.+.|+|+++.+||+++|....+ ..+.++..+++.+ .......+
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~-----~~~~~g~~~~~~v~~~~~~~~~ 151 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGP-----SSDLHGVDGPLPVSSSPPYPSP 151 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTT-----BGGGSCBSSSEEEHHHCSCHCT
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccc-----cccccccccccccccccCCCCH
Confidence 99999999999999999999999999987 77889999999999999988765 2456667788888 45555677
Q ss_pred hHHHHHHHHHHcCCCC-CCCCCCCCCCc----------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCC
Q psy7389 275 NLPVLIKAWKEKGYPE-RDLNAENQVGG----------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKH 343 (731)
Q Consensus 275 ~~~~~~~~~~~~G~~~-~~~~~~~~~G~----------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~ 343 (731)
....+.++++++|++. .+.+.+..+|+ .|. ++..+||.++.+ +.|++|+++|.|++|+++.+++
T Consensus 152 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~--s~~~~~L~~a~~-~~n~~l~~~~~V~~i~~~~~~~-- 226 (296)
T PF00732_consen 152 MNQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARS--SAATTYLPPALK-RPNLTLLTNARVTRIIFDGDGG-- 226 (296)
T ss_dssp HHHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBB--HHHHHHHHHHTT-TTTEEEEESEEEEEEEEETTST--
T ss_pred HHHHHHHHHHHcCCccccccccccccccccccccccchhce--ehhhcccchhhc-cCCccEEcCcEEEEEeeecccc--
Confidence 7889999999999984 56666555554 455 788999999998 8899999999999999975556
Q ss_pred CceEEEEEEEEeCCE---EEEEEeccEEEecccCCCchHHHhhcCCCCcccccccCccceeecCcccccccccc
Q psy7389 344 KKLVAKSVEFFYKKK---LRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHLT 414 (731)
Q Consensus 344 ~~~r~~GV~~~~~g~---~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l~~~gi~~~~~~pVG~nL~dH~~ 414 (731)
+++||++.+.+. ...+.|+ +||||||+|+||+|||+||||+...|++.||+++.++|||+||||||.
T Consensus 227 ---~a~gV~~~~~~~~~~~~~~~ak-~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 227 ---RATGVEYVDNDGGVQRRIVAAK-EVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp ---EEEEEEEEETTTSEEEEEEEEE-EEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--EE
T ss_pred ---ceeeeeeeecCCcceeeeccce-eEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhcccC
Confidence 999999988432 3455565 899999999999999999999999999999999999999999999984
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=1.9e-30 Score=245.02 Aligned_cols=144 Identities=42% Similarity=0.701 Sum_probs=109.0
Q ss_pred cCCccEEEccCCCCCCCCCeeccCCCCChhHHHHHHhcchHHHHHHHHHhhhhcccCCCCCCcccccccccccccccccc
Q psy7389 516 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDMWNSIPPSNKLKRIKPTVDSWTSSFR 595 (731)
Q Consensus 516 p~srg~V~l~~~d~~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 595 (731)
|.|||+|+|+++|| ++.|.|+++|+.++.|++.+.++ ++.++ ++ +... ++
T Consensus 1 P~S~G~V~L~~~d~-~~~p~i~~~y~~~~~D~~~~~~~-----~~~~~------------------~i-----~~~~-~~ 50 (144)
T PF05199_consen 1 PKSRGRVTLDSSDP-FGQPLIDPNYLSDPRDLEALREG-----IKRAR------------------RI-----LRAA-FE 50 (144)
T ss_dssp -SS-BEEEESSSST-TSEEEEE--TTSSHHHHHHHHHH-----HHHHH------------------HH-----HTSG-GG
T ss_pred CCCCcEEEeCCCCC-CCCcEEEeCCCCCHHHHHHHHHH-----HHHHH------------------HH-----Hhhh-hc
Confidence 78999999999999 99999999999999999999999 88888 77 4444 44
Q ss_pred ccchhhhhhhhhhccccceecccccccCCCCccCCCCcccccccccccCCCHHHHHHHHHhhcCcccccccccccCCCCC
Q psy7389 596 NNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTDLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDD 675 (731)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~GTcrMG~~d~ 675 (731)
. ++..+ +.....+.+.. ....++++|++|++....+++|++||||||+ ++
T Consensus 51 ~------------~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~-~~ 100 (144)
T PF05199_consen 51 E------------IGAGE------LLPGPSPFCPD-----------ASLDSDEDLECYIRQNVGTSWHPSGTCRMGP-DP 100 (144)
T ss_dssp G------------TEEEE------EESCGCSCCGC-----------STTTCHHHHHHHHHHHGEECSS-BETT-BTS-ST
T ss_pred c------------ccccc------ccccccccccc-----------cccccchhhhhheeeccceecccccceeccc-cC
Confidence 3 22211 11111111110 1245778999999999999999999999998 45
Q ss_pred CCCccCCCCeEeccCCeEEeecCCCCCCCCCCcHHHHHHHHHHH
Q psy7389 676 PGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKA 719 (731)
Q Consensus 676 ~~~VVD~~~rV~g~~nL~V~DaSv~P~~~~~NP~lTi~AlA~r~ 719 (731)
.++|||++|||||++||||+|+|+||+.+++||++|+||||+|+
T Consensus 101 ~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 101 DTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp TTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred CceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 56999999999999999999999999999999999999999996
No 9
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.48 E-value=8.1e-14 Score=157.07 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=108.4
Q ss_pred cccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccCCCCeeEee
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRCYWA 195 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 195 (731)
++||||||+|++|+++|++|+++ +|.+|+|||++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~-------------------------------------------- 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-------------------------------------------- 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc--------------------------------------------
Confidence 69999999999999999999996 689999999973
Q ss_pred cceeeechhhhhcceeecCCHhhHHHHHH-cCCCCC--ChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCCCC
Q psy7389 196 RGKVMGGSSTINYMIYARGNAEDYDEWEA-MGNEGW--GYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (731)
Q Consensus 196 ~g~~lGG~S~~n~~~~~r~~~~d~~~w~~-~g~~~w--~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (731)
...|+|..|++++.... ..+..+.. .+.+.. .+......++.++++..... ++|++. ..|.+.+...+..
T Consensus 60 ---~g~GaSgrn~G~~~~~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~l~~~~~--i~~~~~-~~G~l~~a~~~~~ 132 (460)
T TIGR03329 60 ---CGAGASGRNGGCMLTWS-TKFFTLKRLFGEAEAARLVKASEQAVLEIAAFCEQHN--IDAQLR-LDGTLYTATNPAQ 132 (460)
T ss_pred ---cccccccccCccccccc-cCHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCcc-cCCEEEEecCHHH
Confidence 12456666666443211 11111111 111000 01111112222222211111 467776 5788887765444
Q ss_pred CChHHHHHHHHHHcCCCC-CCCCCC---------CCCC-c--cccC---CChhhhccHhhHhcCCCeEEEcCcEEEEEEe
Q psy7389 273 DKNLPVLIKAWKEKGYPE-RDLNAE---------NQVG-G--FICG---DSTNGAFIRPIRKKRKNLTILTEAHVTRIIF 336 (731)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~-~~~~~~---------~~~G-~--~r~~---~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~ 336 (731)
....+...+.+++.|++. ..++.. ...+ . ...+ ...+...|..++. +.|++|++++.|++|..
T Consensus 133 ~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i~P~~l~~~L~~~a~-~~Gv~i~~~t~V~~i~~ 211 (460)
T TIGR03329 133 VGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASVQPGLLVRGLRRVAL-ELGVEIHENTPMTGLEE 211 (460)
T ss_pred HHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEECHHHHHHHHHHHHH-HcCCEEECCCeEEEEee
Confidence 444455556667778652 222111 1111 1 0000 0112223444555 68999999999999973
Q ss_pred cCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHH
Q psy7389 337 DKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 337 ~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
. + ...|.. .++ +|+|+ .||+|+|++ ++.++
T Consensus 212 ~---~------~~~v~t-~~g---~v~A~-~VV~Atga~-s~~l~ 241 (460)
T TIGR03329 212 G---Q------PAVVRT-PDG---QVTAD-KVVLALNAW-MASHF 241 (460)
T ss_pred C---C------ceEEEe-CCc---EEECC-EEEEccccc-ccccC
Confidence 2 2 223433 222 58998 599999985 44443
No 10
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.41 E-value=8.5e-12 Score=143.90 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=53.6
Q ss_pred hhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCc-hHHHh
Q psy7389 309 NGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS-PKILM 382 (731)
Q Consensus 309 ~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~T-p~LLl 382 (731)
....|.++++ ..|++|++++.|++|+.+++ + +|+||.+..++....|+|+|.||||||+|.. +.++.
T Consensus 215 ~~~~l~~~~~-~~gv~i~~~~~~~~Li~d~~-g-----~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 215 LVARLRLALK-DAGVPLWLDSPMTELITDPD-G-----AVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHHHH-hCCceEEeCCEEEEEEECCC-C-----cEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 3344556666 78999999999999999754 4 8999998877778889998679999999985 44443
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.40 E-value=8.3e-12 Score=141.98 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=51.1
Q ss_pred hhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhh
Q psy7389 310 GAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML 383 (731)
Q Consensus 310 ~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~ 383 (731)
...|...++ +.|++|++++.|++|+.+++ + +++||.+..++....|+|+|.||||+|++....-|++
T Consensus 180 ~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~-g-----~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 180 MDPLAKRAA-ALGVQIRYDTRATRLIVDDD-G-----RVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHHH-hCCCEEEeCCEEEEEEECCC-C-----CEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 334555555 68999999999999998753 4 7999998776767789994479999999985444443
No 12
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.39 E-value=4.5e-12 Score=145.31 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=49.8
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHH
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
..|...+. +.|++|++++.|++|+.+ ++ +|+||.+..++....|.|+|.||||+|+|....-|
T Consensus 221 ~~L~~~~~-~~Gv~i~~~t~v~~Li~~--~g-----~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 221 AGLFAGVL-RAGIPIWTETSLVRLTDD--GG-----RVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHH-HCCCEEEecCEeeEEEec--CC-----EEEEEEEEECCcEEEEEcCCEEEEecCCccccHHH
Confidence 33445455 689999999999999965 35 89999887777777899977899999999865433
No 13
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.37 E-value=1.3e-11 Score=139.57 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=51.8
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEE-eCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFF-YKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~-~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
.|.+.++ +.|++|++++.|++|+.++ + +++||.+. .++....++|+ .||||+|++.++..|+..-.+
T Consensus 136 ~l~~~~~-~~gv~i~~~t~v~~l~~~~--g-----~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 136 ALYRSAE-RLGVEIRYDAPVTALELDD--G-----RFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHHH-HCCCEEEcCCEEEEEEecC--C-----eEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence 3444455 6799999999999999863 4 78999885 34556678997 699999999988877765443
No 14
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.37 E-value=1.5e-11 Score=140.28 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=50.2
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
.++..+.+ +.|++|++++.|++|+.+ ++ +|+||.+..++....|+|+|.||||||+++...-|+
T Consensus 178 ~l~~~~~~-~~gv~i~~~t~~~~Li~~--~g-----~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 178 RFLAALAR-FPNARLRLNTPLVELVVE--DG-----RVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHHh-CCCCEEEeCCEEEEEEec--CC-----EEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 34444444 569999999999999986 35 899999877777888999768999999997544333
No 15
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.37 E-value=5.8e-12 Score=144.75 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=51.6
Q ss_pred hhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 310 GAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 310 ~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
...|.+.+. +.|++|++++.|++|+.++ + +|+||.+..++....|+|+|.||||||++....=|+
T Consensus 211 ~~~l~~~~~-~~gv~i~~~~~v~~Li~~~--g-----~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 211 IGRMLEAAL-AAGVPLWTNTPLTELIVED--G-----RVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHHHH-hCCCEEEeCCEEEEEEEeC--C-----EEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 334555555 6899999999999999863 5 899999887777788999767999999998654443
No 16
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.34 E-value=2.8e-11 Score=134.99 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=45.9
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEE--eCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFF--YKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~--~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
|...++ +.|++|+.++.|++|+.++ + +|+||.+. .+++..+|+|+ .||||+|++.. .++.
T Consensus 147 l~~~~~-~~gv~i~~~~~~~~Li~e~--g-----~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 147 LAKAAE-EAGVDIRFNTRVTDLITED--G-----RVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHHH-HTTEEEEESEEEEEEEEET--T-----EEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HHHHHh-hcCeeeeccceeeeEEEeC--C-----ceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 444444 5789999999999999973 4 89999999 57888999998 79999999998 4443
No 17
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.32 E-value=4.7e-11 Score=135.93 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=46.2
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeC-CEEEEEEeccEEEecccCCCch-HHHh
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYK-KKLRRARAKKEVISSAGAINSP-KILM 382 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~-g~~~~i~A~k~VVLAAGai~Tp-~LLl 382 (731)
|...+. ..|++|++++.|++|+.+ ++ +++||.+... +...+|+|+ .||||+|++... .++.
T Consensus 196 L~~~~~-~~gv~i~~~t~v~~l~~~--~g-----~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 196 LLKNVQ-ERKIPLFVNADVTKITEK--DG-----KVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHHHH-HcCCeEEeCCeeEEEEec--CC-----EEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHHH
Confidence 444444 579999999999999865 34 8999988654 355689997 699999998754 4443
No 18
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.31 E-value=2.4e-12 Score=139.79 Aligned_cols=191 Identities=26% Similarity=0.250 Sum_probs=109.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccCCCCeeEeecce
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRCYWARGK 198 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~ 198 (731)
||||||+|++|+++|++|++. |++|+|||++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~---------------------------------------------- 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDI---------------------------------------------- 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSST----------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccc----------------------------------------------
Confidence 899999999999999999998 999999999831
Q ss_pred eeechhhhhcceeecCC--Hh--hHHHHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCCCCCC
Q psy7389 199 VMGGSSTINYMIYARGN--AE--DYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADK 274 (731)
Q Consensus 199 ~lGG~S~~n~~~~~r~~--~~--d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~~~ 274 (731)
.+|+|..+++.+.... .. .+..+.. ....++.+....... .+.++ ..|.+.+...+....
T Consensus 34 -~~~aS~~~~g~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~-----~~~~~-~~g~l~~~~~~~~~~ 97 (358)
T PF01266_consen 34 -GSGASGRSGGLVRPGISSYPDPQYARLAR---------ESVEFWRELAEEYGI-----PVGFR-PCGSLYLAEDEEDAE 97 (358)
T ss_dssp -TSSGGGSSSEEEECSGSHHSSHHHHHHHH---------HHHHHHHHHHHHTTS-----SCEEE-ECEEEEEESSHHHHH
T ss_pred -cccccccccccccccccccccccccchhh---------hhccchhhhhhhcCc-----ccccc-cccccccccchhhhh
Confidence 2245555555554441 11 1111111 112233333222111 12222 346666654433333
Q ss_pred hHHHHHHHHHHcCCCCCC------------CCCCCCCCc--cccC---CChhhhccHhhHhcCCCeEEEcCcEEEEEEec
Q psy7389 275 NLPVLIKAWKEKGYPERD------------LNAENQVGG--FICG---DSTNGAFIRPIRKKRKNLTILTEAHVTRIIFD 337 (731)
Q Consensus 275 ~~~~~~~~~~~~G~~~~~------------~~~~~~~G~--~r~~---~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~ 337 (731)
..+.+.+.++..+++... ++.....+. ..++ ...+...|...+. +.|++|+++++|++|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~-~~Gv~i~~~~~V~~i~~~ 176 (358)
T PF01266_consen 98 SLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ-RAGVEIRTGTEVTSIDVD 176 (358)
T ss_dssp HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-HTT-EEEESEEEEEEEEE
T ss_pred hccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-Hhhhhccccccccchhhc
Confidence 445566667777774311 111000011 1110 0223344444555 579999999999999988
Q ss_pred CCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 338 KTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 338 ~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
+ + +++||.+.++ .++|+ .||+|+|+ +|+.|+..+|+
T Consensus 177 ~--~-----~v~gv~~~~g----~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 177 G--G-----RVTGVRTSDG----EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp T--T-----EEEEEEETTE----EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred c--c-----cccccccccc----ccccc-eeEecccc-cceeeeecccc
Confidence 4 4 7888875443 59998 59999996 78888887754
No 19
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.31 E-value=2.2e-11 Score=139.81 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
..|++|+++++|+.|..+ ++ +++||++.+ ++...+|+|+ .||+|||+ ++..|+...|+
T Consensus 161 ~~Ga~i~~~t~V~~i~~~--~~-----~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 161 EHGAQILTYHEVTGLIRE--GD-----TVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred hCCCEEEeccEEEEEEEc--CC-----eEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence 589999999999999876 34 788998865 3555789998 59999996 68888776664
No 20
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.28 E-value=2.7e-11 Score=134.75 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+||||||||++|+++|++||++ |++|+||||+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 5999999999999999999999 99999999985
No 21
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.27 E-value=9.2e-11 Score=130.85 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=40.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~T 377 (731)
+.|++|++++.|++|+.++ + +++||.+..++...+|+|+ .||||+|++..
T Consensus 141 ~~gV~i~~~t~v~~Li~~~--~-----~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 141 RKNITIIENCYLVDIIEND--N-----TCIGAICLKDNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred cCCCEEEECcEeeeeEecC--C-----EEEEEEEEECCcEEEEEcC-eEEEccCcccc
Confidence 5699999999999998763 4 7889876666655689997 69999998764
No 22
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=1.6e-10 Score=132.97 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=52.0
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhc
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS 384 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~S 384 (731)
.|.+.++ +.|++|++++.|++|+.+ ++ +|+||.+..+++...|+|++.||||||++.+..-|+..
T Consensus 213 ~L~~~~~-~~gv~v~~~t~v~~l~~~--~g-----~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 213 GLRIGLQ-RAGVPVLLNTPLTDLYVE--DG-----RVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHH-cCCCEEEeCCEEEEEEEe--CC-----EEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 3445556 689999999999999976 34 89999987777778899976799999999976655543
No 23
>PLN02815 L-aspartate oxidase
Probab=99.23 E-value=1.6e-10 Score=132.95 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=41.7
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
..|++|++++.|++|+.+++++ ..+|+||.+.+ ++....|.|+ .||||||++.
T Consensus 168 ~~~i~i~~~~~~~~Li~~~~g~---~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 222 (594)
T PLN02815 168 DPNITFFEHHFAIDLLTSQDGG---SIVCHGADVLDTRTGEVVRFISK-VTLLASGGAG 222 (594)
T ss_pred cCCCEEEeceEhheeeeecCCC---ccEEEEEEEEEcCCCeEEEEEec-eEEEcCCcce
Confidence 4699999999999999864332 11489998754 5667788997 7999999986
No 24
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.23 E-value=1.3e-10 Score=133.11 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=43.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~T 377 (731)
+.|++|++++.|++|+.+++++ +++||.+..++....++|+ .||||||++..
T Consensus 147 ~~gi~i~~~~~v~~Li~~~~~g-----~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 147 RPNIEIISQALALSLWLEPETG-----RCQGISLLYQGQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred cCCcEEEECcChhhheecCCCC-----EEEEEEEEECCeEEEEEcC-EEEEcCCCCcc
Confidence 4699999999999999874335 8999988777777778997 69999999753
No 25
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.21 E-value=1.1e-10 Score=130.08 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||||||.+|+++|++|+++ |.+|+|||++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 799999999999999999998 99999999984
No 26
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=2.3e-10 Score=132.14 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=45.1
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. +.|++|++++.|++|+.+++ + +|+||.+.+ ++....|+|+ .||||||++..
T Consensus 149 L~~~~~-~~gi~i~~~~~~~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNL-KNHTTIFSEWYALDLVKNQD-G-----AVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred HHHHhh-hcCCEEEeCcEEEEEEECCC-C-----EEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 444444 57999999999999998643 4 899998753 5667789997 79999999764
No 27
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.21 E-value=7e-11 Score=131.31 Aligned_cols=36 Identities=36% Similarity=0.500 Sum_probs=31.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCC-CeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~ 151 (731)
.+|||||||+|.+|+++|++|+++.| .+|+||||+.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 37999999999999999999998327 4999999973
No 28
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.20 E-value=3.3e-10 Score=130.46 Aligned_cols=36 Identities=42% Similarity=0.573 Sum_probs=33.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..++||||||+|.+|+++|..++++ |.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 4589999999999999999999999 99999999985
No 29
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.19 E-value=4.5e-10 Score=130.44 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=45.6
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
.|...+. +.|++|++++.|++|+.++ ++ +|+||.+.. ++....|+|+ .||||||++..
T Consensus 171 ~L~~~a~-~~gv~i~~~~~~~~Li~~~-~g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSL-KYDCNFFIEYFALDLIMDE-DG-----ECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHHH-hCCCEEEeceEEEEEEECC-CC-----EEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 3444455 5799999999999999843 34 899998754 5777789998 69999999764
No 30
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=4.2e-10 Score=129.65 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=44.3
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
|...+. +.|++|++++.|++|+.+ ++ +|+||.+.+ ++....++|+ .||||||++.
T Consensus 142 L~~~~~-~~gv~i~~~~~~~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 142 LFERTS-GLNVDFYNEWFSLDLVTD--NK-----KVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHHHHH-hCCCEEEeCcEEEEEEEE--CC-----EEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 444444 569999999999999986 35 899998875 4566789997 7999999987
No 31
>PRK12839 hypothetical protein; Provisional
Probab=99.19 E-value=2.2e-10 Score=131.87 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=49.7
Q ss_pred CcccccccccccCCCCCCCCccCCCCeEeccCCeEEeec---CCCCC-C-CCCCcHHHHHHHHHHHHHHHHhhhccCC
Q psy7389 659 GTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDA---SIMPK-I-VRGNTNAPTIMIAEKAADMIKEDWILDR 731 (731)
Q Consensus 659 ~~~~H~~GTcrMG~~d~~~~VVD~~~rV~g~~nL~V~Da---Sv~P~-~-~~~NP~lTi~AlA~r~A~~I~~~~~~~~ 731 (731)
....|-+|+.+.-. ..-|+|.++++ ++|||.++- +++-. . .+.+.....+..++.+++++.+.-+..|
T Consensus 500 p~~~~T~GGl~in~---~~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~~~~ 572 (572)
T PRK12839 500 PGSFGTFAGLVADG---KSRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTGVER 572 (572)
T ss_pred ccccccCCCccCCC---CceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccccCC
Confidence 34567778877664 24688888874 899999984 45532 2 3577788899999999999988766544
No 32
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.18 E-value=5e-10 Score=125.78 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=47.2
Q ss_pred hhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe-CCEEEEEEeccEEEecccCCCchHHH
Q psy7389 310 GAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 310 ~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~-~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
...|...+. +.|++|+.++.|++|+.+++ + +++||++.. ++....+.++ .||||+|++....-|
T Consensus 133 ~~~l~~~~~-~~gv~i~~~~~v~~l~~~~~-g-----~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 133 VQKLYKKAK-KEGIDTRLNSKVEDLIQDDQ-G-----TVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHH-HcCCEEEeCCEeeEeEECCC-C-----cEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHH
Confidence 334555555 68999999999999998653 4 788998875 3444567787 699999998764333
No 33
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.18 E-value=5.7e-10 Score=129.60 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=45.0
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. +.|++|++++.|++|+.+++ + ++.||.+.. ++....|.|+ .||||+|++..
T Consensus 193 L~~~a~-~~gv~i~~~~~~~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 193 LYGQAM-KHNTQFFVEYFALDLIMDSD-G-----ACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HHHHHH-hCCCEEEEeeEEEEEEEcCC-C-----EEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 444444 57999999999999998642 4 899998764 5777889998 69999999764
No 34
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.18 E-value=7e-10 Score=127.23 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=43.8
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEE-----eCCEEEEEEeccEEEecccCCCc
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFF-----YKKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~-----~~g~~~~i~A~k~VVLAAGai~T 377 (731)
.|..+++ +.+++|++++.|++|+.+++ + +++||.+. ..+....+.|+ .||||+|++..
T Consensus 149 ~L~~~~~-~~gV~i~~~~~v~~Li~~~~-g-----~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~~ 211 (541)
T PRK07804 149 ALDAAVR-ADPLDIREHALALDLLTDGT-G-----AVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLGQ 211 (541)
T ss_pred HHHHHHH-hCCCEEEECeEeeeeEEcCC-C-----eEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCCC
Confidence 3555555 57899999999999998743 4 89999876 22334578997 69999998753
No 35
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.18 E-value=3.4e-10 Score=130.90 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=48.3
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhh
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML 383 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~ 383 (731)
|...+. +.|++|++++.|++|+.++ + +++||.+...+....++|+|.||||+|++....-++.
T Consensus 220 L~~~~~-~~Gv~i~~~~~v~~l~~~~--g-----~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 220 LAKSAL-DLGIPILTGTPARELLTEG--G-----RVVGARVIDAGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEeeC--C-----EEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 444455 6899999999999999873 4 8999988765555678886679999999875554443
No 36
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=7.8e-10 Score=128.22 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=45.4
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. +.|++|++++.|++|+.+++ + +|+||.+.+ ++....|.|+ .||||||++..
T Consensus 155 L~~~~~-~~gi~i~~~~~v~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSL-KHNAEFFIEYFALDLIMDDG-G-----VCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHHHh-hcCCEEEEeEEEEEEEEcCC-C-----EEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 444444 57999999999999998742 4 899998753 5667789997 69999999874
No 37
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.16 E-value=6e-10 Score=137.98 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCeEEEcCcEEEEEEecCCC--CCCCceEEEEEEEEe----CCEEEEEEeccEEEecccCCCchH
Q psy7389 321 KNLTILTEAHVTRIIFDKTP--NKHKKLVAKSVEFFY----KKKLRRARAKKEVISSAGAINSPK 379 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g--~~~~~~r~~GV~~~~----~g~~~~i~A~k~VVLAAGai~Tp~ 379 (731)
.|++|++++.|++|+.++++ .++...+|+||.+.. ++....|+|+ .||||||+|....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 58999999999999987421 000112799999875 4667789997 7999999998754
No 38
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=6.2e-10 Score=127.99 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=45.1
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. +.|++|++++.|++|+.++ ++ +++||.+.. ++....|+|+ .||||+|++..
T Consensus 140 L~~~~~-~~gv~i~~~t~v~~Li~~~-~~-----~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLI-KERIKILEEVMAIKLIVDE-NR-----EVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHHHh-cCCCEEEeCeEeeeeEEeC-Cc-----EEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 444455 6899999999999999874 33 699988764 5666789997 69999999864
No 39
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=1.1e-09 Score=127.68 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=44.9
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. +.|++|++++.|++|+.++ + +|+||.+.+ ++....|.|+ .||||||++..
T Consensus 176 L~~~~~-~~gV~i~~~t~v~~Li~d~--g-----~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 176 LSRQIA-AGTVKMYTRTEMLDLVVVD--G-----RARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHHHH-hcCCEEEeceEEEEEEEeC--C-----EEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 333444 6799999999999999863 4 899998875 4666789998 69999999875
No 40
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.15 E-value=1.1e-09 Score=126.69 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=49.0
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
.|...+. +.|++|++++.|++|+.+ ++ +++||.+..++...+|+|+|.||||+|++....-++
T Consensus 222 ~L~~~a~-~~Gv~i~~~t~v~~l~~~--~g-----~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 222 RLLKSAE-DLGVRIWESAPARELLRE--DG-----RVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHH-hCCCEEEcCCEEEEEEEe--CC-----EEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 3445555 689999999999999976 34 899998877666668999437999999998655543
No 41
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=2.1e-09 Score=124.38 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=49.4
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
.|...++ +.|++|++++.|++|+.+ ++ +++||.+..+++...|.|++.||||+|++....=|+
T Consensus 226 aL~~~~~-~~Gv~i~~~t~v~~Li~~--~g-----~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 226 RLLYSLR-ARGVRILTQTDVESLETD--HG-----RVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHH-hCCCEEEeCCEEEEEEee--CC-----EEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 3445555 689999999999999876 34 899998877777778998557999999998654433
No 42
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.12 E-value=2.3e-10 Score=128.68 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
.+.+|||||||||+.|+++|+.|++. ++.+|+||||..
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 34579999999999999999999996 447999999984
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.11 E-value=3.7e-10 Score=122.75 Aligned_cols=198 Identities=21% Similarity=0.189 Sum_probs=115.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccCCCCeeEe
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRCYW 194 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 194 (731)
..|||||||||..|+++|+.|++. |.++|+||||-.....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~--------------------------------------- 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ--------------------------------------- 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence 379999999999999999999997 4499999999753321
Q ss_pred ecceeeechhhhhcceeecCC---HhhHH-HHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCC
Q psy7389 195 ARGKVMGGSSTINYMIYARGN---AEDYD-EWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLP 270 (731)
Q Consensus 195 ~~g~~lGG~S~~n~~~~~r~~---~~d~~-~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~ 270 (731)
++|..|.+...-+. +.++. .....|. ..+|+-..++ ..++. ..|.+.++..+
T Consensus 43 -------~sS~~NSgviHag~~y~p~slka~l~~~g~--------~~~~~~~kq~--------~~~f~-~~g~l~vA~~e 98 (429)
T COG0579 43 -------ESSSNNSGVIHAGLYYTPGSLKAKLCVAGN--------INEFAICKQL--------GIPFI-NCGKLSVATGE 98 (429)
T ss_pred -------ccccCcccceeccccCCCcchhhHHHHHHH--------HHHHHHHHHh--------CCccc-ccCeEEEEECh
Confidence 11112222211111 11111 1111111 1112222222 11233 44888888888
Q ss_pred CCCChHHHHHHHHHHcCCC-CCCCCCCC-----------CCCccccC------CChhhhccHhhHhcCCCeEEEcCcEEE
Q psy7389 271 YADKNLPVLIKAWKEKGYP-ERDLNAEN-----------QVGGFICG------DSTNGAFIRPIRKKRKNLTILTEAHVT 332 (731)
Q Consensus 271 ~~~~~~~~~~~~~~~~G~~-~~~~~~~~-----------~~G~~r~~------~s~~~~~L~~a~~~~~g~~i~~~t~V~ 332 (731)
...+..+.+.+.+.+.|+. ...++... ..+....+ .......|...+. ..|++|..+++|+
T Consensus 99 ~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~a~-~~g~~i~ln~eV~ 177 (429)
T COG0579 99 EEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQ-ANGVELRLNTEVT 177 (429)
T ss_pred HHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHHHH-HcCCEEEecCeee
Confidence 7777788888888888887 22111110 01100000 0111222333344 4699999999999
Q ss_pred EEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCC
Q psy7389 333 RIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 388 (731)
Q Consensus 333 ~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~ 388 (731)
+|...++| ++-+.. .+|++. ++|+ .||.||| ..+-.|+.++|+..
T Consensus 178 ~i~~~~dg-------~~~~~~-~~g~~~-~~ak-~Vin~AG-l~Ad~la~~~g~~~ 222 (429)
T COG0579 178 GIEKQSDG-------VFVLNT-SNGEET-LEAK-FVINAAG-LYADPLAQMAGIPE 222 (429)
T ss_pred EEEEeCCc-------eEEEEe-cCCcEE-EEee-EEEECCc-hhHHHHHHHhCCCc
Confidence 99987532 222222 234443 9998 6999999 58999999999875
No 44
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.11 E-value=3.7e-10 Score=124.88 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=32.4
Q ss_pred cccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
.|||||||||.+|+++|++|++. +|++|+||||+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 48999999999999999999995 699999999984
No 45
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.10 E-value=3.7e-10 Score=127.28 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=45.0
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEE--eCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFF--YKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~--~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
|.+.+. +.|++|+++++|++|..++++ .+ .|.+. .++...+++|+ .||+|||+ ++.+|+..+|+.
T Consensus 184 L~~~a~-~~Gv~i~~~t~V~~i~~~~~~------~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLV-QNGTTIRFGHEVRNLKRQSDG------SW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEEcCCC------eE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence 434444 579999999999999875322 22 23322 23434578998 59999996 688888888875
No 46
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.09 E-value=1e-09 Score=115.71 Aligned_cols=35 Identities=40% Similarity=0.608 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.+||||||+|++|+.+|..++++ |++|+|||+++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~ 36 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGP 36 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCc
Confidence 369999999999999999999998 99999999996
No 47
>PRK08275 putative oxidoreductase; Provisional
Probab=99.09 E-value=1.9e-09 Score=124.15 Aligned_cols=59 Identities=24% Similarity=0.206 Sum_probs=45.5
Q ss_pred hhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 310 GAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 310 ~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
...|...+. +.|++|++++.|++|+.+++ + ++.||.+.+ ++....++|+ .||||+|++.
T Consensus 140 ~~~L~~~~~-~~gv~i~~~~~v~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLK-RARVLITNRIMATRLLTDAD-G-----RVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHHHH-HCCCEEEcceEEEEEEEcCC-C-----eEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 344555555 68999999999999998632 4 799998754 5556678997 6999999875
No 48
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.08 E-value=3.4e-09 Score=123.07 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=41.7
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
|..++.+..|++|+.++.|++|+.++ + +++||.... ++....+.|+ .||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~--g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDD--N-----RIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeC--C-----EEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 44444313459999999999998763 4 899987643 4555689998 6999999875
No 49
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2.6e-09 Score=123.62 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred CeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 322 NLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 322 g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
+++|++++.|++|+.+++ + +|+||.+.+ ++....+.|+ .||||||++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDE-G-----VCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCC-C-----EEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 489999999999998643 4 899998875 4555678897 79999999874
No 50
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=2.6e-09 Score=123.57 Aligned_cols=56 Identities=30% Similarity=0.399 Sum_probs=43.7
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|.+.+. +.|++|++++.|++|+.++ + ++.||.... ++....++|+ .||||+|++..
T Consensus 141 L~~~~~-~~gi~i~~~t~v~~L~~~~--g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLR-RYGVTIYDEWYVMRLILED--N-----QAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HHHHHh-hCCCEEEeCcEEEEEEEEC--C-----EEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 444445 6799999999999998763 4 899997643 5555679997 69999999764
No 51
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.07 E-value=2.7e-09 Score=124.65 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=45.2
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. +.|++|+.++.|++|+.+ ++ ++.||.+.+ ++....+.|+ .||||||++..
T Consensus 164 L~~~~~-~~gv~i~~~~~~~~Li~~--~g-----~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAI-KLGVPVHDRKEAIALIHD--GK-----RCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HHHHHH-hCCCEEEeeEEEEEEEEE--CC-----EEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 444445 689999999999999986 35 899998875 6777788997 69999998763
No 52
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=3.6e-09 Score=122.55 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=44.3
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+. ..|++|+.++.|++|+.+++ + +++||.+.+ ++....+.|+ .||||+|++..
T Consensus 154 L~~~~~-~~gi~i~~~~~~~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNV-AAKTQFFVEWMALDLIRDAD-G-----DVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHHHHH-hcCCEEEeCcEEEEEEEcCC-C-----eEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 444444 57999999999999998643 4 899998753 4666788897 69999998764
No 53
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.06 E-value=2.4e-10 Score=125.37 Aligned_cols=56 Identities=21% Similarity=0.149 Sum_probs=34.5
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHH
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 380 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~L 380 (731)
|...+. +.|++|++++.|+.|..++ + .+..|++. ++ ..+.|+ .||||+|+...|++
T Consensus 115 L~~~l~-~~gv~i~~~~~V~~i~~~~--~-----~~f~v~~~-~~--~~~~a~-~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 115 LLEELK-RLGVEIHFNTRVKSIEKKE--D-----GVFGVKTK-NG--GEYEAD-AVILATGGKSYPKT 170 (409)
T ss_dssp HHHHHH-HHT-EEE-S--EEEEEEET--T-----EEEEEEET-TT--EEEEES-EEEE----SSSGGG
T ss_pred HHHHHH-HcCCEEEeCCEeeeeeecC--C-----ceeEeecc-Cc--ccccCC-EEEEecCCCCcccc
Confidence 444444 6899999999999999874 3 55566652 22 378998 59999999888875
No 54
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.06 E-value=1.8e-09 Score=118.86 Aligned_cols=33 Identities=45% Similarity=0.635 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||||||||.+|+++|++|+++ |++|+|||++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 7999999999999999999999 99999999974
No 55
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.06 E-value=4.3e-09 Score=119.56 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=44.1
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCc
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~T 377 (731)
.|...+.+..|++|++++.|++|+.++ + +++||.+...+....++|+ .||||+|++..
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~~~--g-----~v~Gv~~~~~~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLIET--G-----RVVGVWVWNRETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeeccC--C-----EEEEEEEEECCcEEEEEcC-EEEECCCcccC
Confidence 344444413799999999999998763 4 7889988765555678998 69999999764
No 56
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.05 E-value=5.7e-10 Score=122.13 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||||||+|++|+++|++|+++ |++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999999 99999999974
No 57
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=2.6e-09 Score=123.54 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=40.9
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
..|+++++++.|++|+.++ + ++.||.+.. ++....++|+ .||||+|++..
T Consensus 146 ~~~i~i~~~~~v~~Li~~~--g-----~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVDD--G-----HVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred CCCcEEEeCeEEEEEEEeC--C-----EEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 4689999999999999863 4 899998753 5666789998 79999998763
No 58
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.03 E-value=5.3e-09 Score=121.11 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=43.9
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
|.+.+. +.|++|++++.|++|+.++ + +++||.+.. ++....++|+ .||||+|++..
T Consensus 135 L~~~~~-~~gv~i~~~~~v~~L~~~~--g-----~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCL-KLGVSFFNEYFALDLIHDD--G-----RVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHHHH-HcCCEEEeccEEEEEEEeC--C-----EEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 444444 5699999999999999863 4 899998754 4556689997 79999998763
No 59
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3.2e-09 Score=123.01 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=40.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
..|++|+.++.|++|+.++ + +++||.+.. ++....+.|+ .||||+|++.
T Consensus 150 ~~gv~i~~~~~v~~Li~~~--g-----~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (577)
T PRK06069 150 FDNIHFYDEHFVTSLIVEN--G-----VFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG 200 (577)
T ss_pred cCCCEEEECCEEEEEEEEC--C-----EEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence 4699999999999999763 4 899998754 4555678998 6999999975
No 60
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.03 E-value=4.2e-09 Score=120.05 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=43.3
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~T 377 (731)
|...+.+..|++|+.++.|++|+.+ ++ +++||.+...+....+.|+ .||||+|++..
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVD--DG-----AVAGVLAATAGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeec--CC-----EEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence 3334431458999999999999876 34 8999988765555679998 69999999753
No 61
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.03 E-value=9.5e-09 Score=118.49 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=43.7
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCC-CCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTP-NKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g-~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
+..++. ..+++|++++.|++|+.++++ + +|+||.+.+ ++....|.|+ .||||||++.
T Consensus 132 l~~~l~-~~~~~i~~~~~v~~Ll~d~~~~G-----rV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 132 VAEAAK-NALGDIFERIFIVKLLLDKNTPN-----RIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred HHHHHH-hCCCeEEcccEEEEEEecCCCCC-----eEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 333444 456899999999999986431 5 899998754 5666789998 6999999974
No 62
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.02 E-value=2.5e-09 Score=120.78 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
.+|||||||||..|+++|++|++. +|.+|+||||..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 479999999999999999999985 689999999975
No 63
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=5.3e-09 Score=121.83 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=39.1
Q ss_pred eEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 323 LTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 323 ~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
++|+.++.|++|+.+ ++ ++.||.+.. ++....|.|+ .||||+|++..
T Consensus 166 v~i~~~~~v~~L~~~--~g-----~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD--GG-----RIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE--CC-----EEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 999999999999976 34 899987654 5666789998 69999998764
No 64
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=7e-09 Score=120.13 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=45.6
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCC--CCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKT--PNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~--g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
..|...+. ..|++|++++.|++|+.+++ ++ +++||.... ++....|+|+ .||||+|++..
T Consensus 144 ~~L~~~~~-~~gv~i~~~~~v~~Li~~~~~~~g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 144 QTLYQNCV-KHGVEFFNEFYVLDLLLTETPSGP-----VAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHHHH-hcCCEEEeCCEEEEEEecCCccCC-----cEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 33555555 67999999999999998642 14 899998753 5666689997 69999998763
No 65
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.01 E-value=5.7e-09 Score=120.41 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=41.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
..|++++.++.|++|+.++ + +++||.+.+ ++....+.|+ .||||+|++..
T Consensus 145 ~~~i~i~~~~~v~~Li~~~--g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 145 YPQIMRYDEWFVTDLLVDD--G-----RVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred cCCCEEEeCeEEEEEEeeC--C-----EEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 4689999999999999863 4 899998754 5666789997 79999998763
No 66
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.01 E-value=5.1e-09 Score=121.35 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=41.5
Q ss_pred CCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 321 KNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
.|++|++++.|++|+.++ ++ +|+||.+.+ ++....+.|+ .||||||++..
T Consensus 146 ~gV~i~~~t~v~~Li~dd-~g-----rV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVD-GN-----RARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred CCcEEEeCcEEEEEEEcC-CC-----EEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 589999999999999864 34 899998875 4666789998 69999999764
No 67
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.00 E-value=9e-09 Score=118.11 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=42.1
Q ss_pred CCCeEEEcCcEEEEEEecC----CCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 320 RKNLTILTEAHVTRIIFDK----TPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~----~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
.+|++|++++.|++|+.++ +++ +++||.+.+ ++....|.|+ .||||+|++..
T Consensus 151 ~~~I~v~~~~~v~~Li~~~~~~~~~g-----~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 151 HPNITVLERHNAIDLITSDKLGLPGR-----RVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred CCCcEEEeeEEeeeeeecccccCCCC-----EEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 5699999999999999763 124 899998864 4666789997 79999999863
No 68
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.98 E-value=3e-09 Score=116.84 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||+|++|+++|++|++. |.+|+||||+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 69999999999999999999999 99999999984
No 69
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.97 E-value=7.4e-09 Score=120.44 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=49.1
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhcC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSG 385 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~SG 385 (731)
|...+. +.|++|+.++.|++|..++.++ +++||.+.+ ++..++|+|+ .||+|||+ ++..|+...|
T Consensus 238 l~~~A~-~~Ga~i~~~~~V~~l~~~~~~g-----~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 238 LACTAA-LAGAAVLNYAEVVSLIKDESTG-----RIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHH-hCCcEEEeccEEEEEEEecCCC-----cEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence 334444 6899999999999998763123 688888764 4555679998 69999996 6888887765
No 70
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.94 E-value=5e-09 Score=108.01 Aligned_cols=34 Identities=38% Similarity=0.511 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||+|++|+++|+.||++ |++|+||||+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 79999999999999999999999 99999999985
No 71
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.94 E-value=2.2e-08 Score=111.27 Aligned_cols=74 Identities=23% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhcCCCCc---ccccc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGIGPK---DHLTS 394 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~---~~l~~ 394 (731)
..|+++++.++|++++.++ -+.||++.+ +|+++.|+|+ .||.|||. |+-.++...+..+. .....
T Consensus 176 ~~Ga~il~~~~v~~~~re~--------~v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~~~~~~~~~~vr~s 245 (532)
T COG0578 176 EHGAEILTYTRVESLRREG--------GVWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMAGLEQSPHIGVRPS 245 (532)
T ss_pred hcccchhhcceeeeeeecC--------CEEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhhcccCCCCccceec
Confidence 5899999999999999873 378999986 5789999998 69999996 88888888876653 34446
Q ss_pred cCccceeec
Q psy7389 395 LNIKTLVDL 403 (731)
Q Consensus 395 ~gi~~~~~~ 403 (731)
.|+.+|++.
T Consensus 246 kGsHlVv~~ 254 (532)
T COG0578 246 KGSHLVVDK 254 (532)
T ss_pred cceEEEecc
Confidence 777777765
No 72
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.94 E-value=6.8e-09 Score=101.07 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++||+|||+|++|+++|++||++ |+||+|+|+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 79999999999999999999999 99999999974
No 73
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.94 E-value=5.7e-09 Score=107.89 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||+|++|+++|++|+++ |++|+|||+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 79999999999999999999998 99999999974
No 74
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.93 E-value=2.3e-08 Score=121.34 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 321 KNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
.++++.+++.+.+|+.+ ++ +++||.+.+ +|....|+|+ .||||||++..
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g-----~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GG-----RAVGAAALNTRTGEFVTVGAK-AVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CC-----EEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence 47999999999999876 35 899998754 5777789997 79999999863
No 75
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.93 E-value=1.8e-08 Score=114.85 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=40.5
Q ss_pred CCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe-CCEEEEEEeccEEEecccCCCc
Q psy7389 321 KNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~-~g~~~~i~A~k~VVLAAGai~T 377 (731)
.|++|++++.|++|+.+ ++ ++.||.+.+ ++....++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g-----~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NG-----RCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CC-----EEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 58999999999999876 34 899998766 4555678998 69999999764
No 76
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=1.8e-08 Score=114.92 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|..+|||||||||++|+++|+.||++ |++|+|||++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d 39 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDD 39 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 45679999999999999999999999 99999999984
No 77
>PLN02661 Putative thiazole synthesis
Probab=98.92 E-value=7e-09 Score=109.92 Aligned_cols=36 Identities=39% Similarity=0.523 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++||+|||+|.+|+++|+.|++++|++|+|||++.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 378999999999999999999986689999999974
No 78
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.91 E-value=1.1e-08 Score=114.94 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG 150 (731)
+.+||||||||++|+++|+.|++. ||.+|+||||-
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 478999999999999999999996 79999999994
No 79
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.90 E-value=3.1e-09 Score=102.57 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+-||||||+|++|+++|++||++ |+||+|+||-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ 62 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK 62 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence 67999999999999999999999 9999999986
No 80
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.89 E-value=4.8e-08 Score=110.30 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+||||||||.+|+++|..|+++ |.+|+|||++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999974
No 81
>KOG2820|consensus
Probab=98.85 E-value=1.7e-08 Score=103.33 Aligned_cols=66 Identities=21% Similarity=0.098 Sum_probs=48.3
Q ss_pred hhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhc
Q psy7389 308 TNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS 384 (731)
Q Consensus 308 ~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~S 384 (731)
.....|...++ ..|+.++.+..|..+.+.+..+ ..++|.+.++. +..|+| +|+++|+ |+.+||-.|
T Consensus 154 kslk~~~~~~~-~~G~i~~dg~~v~~~~~~~e~~-----~~v~V~Tt~gs---~Y~akk-iI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 154 KSLKALQDKAR-ELGVIFRDGEKVKFIKFVDEEG-----NHVSVQTTDGS---IYHAKK-IIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHHHHHHHHHH-HcCeEEecCcceeeEeeccCCC-----ceeEEEeccCC---eeecce-EEEEecH-HHHhhcCcc
Confidence 34445666666 7899999999999999865444 45566555432 578985 9999998 788888765
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.85 E-value=3.6e-09 Score=124.70 Aligned_cols=34 Identities=44% Similarity=0.574 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||||||||.+|+++|++|+++ |++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 58999999999999999999999 99999999974
No 83
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.85 E-value=3.4e-08 Score=110.65 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=46.1
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
..|...++ +.|++|++++.|++|+.+++++ +++||....++ ..++|+ .||||+|++....-++
T Consensus 127 ~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g-----~v~gv~~~~~~--~~i~ak-~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 127 NALYSSAE-RLGVEIRYGIAVDRIPPEAFDG-----AHDGPLTTVGT--HRITTQ-ALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHH-HcCCEEEeCCEEEEEEecCCCC-----eEEEEEEcCCc--EEEEcC-EEEEcCCCcccCHHHH
Confidence 33444555 6899999999999998763234 78888764332 478897 6999999998655444
No 84
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.85 E-value=5.3e-08 Score=111.06 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.++|||||||||++|+.+|+.||++ |++|+|||+++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d 39 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDD 39 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 45679999999999999999999999 99999999974
No 85
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.80 E-value=4.4e-08 Score=111.51 Aligned_cols=50 Identities=24% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAIN 376 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~ 376 (731)
..+++|+.+..|++|+.++++ .+.||.... ++....++|+ .||||+|+..
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~------~v~Gvv~~~~~~g~~~~~~ak-avilaTGG~g 202 (562)
T COG1053 151 FSGIEIFDEYFVLDLLVDDGG------GVAGVVARDLRTGELYVFRAK-AVILATGGAG 202 (562)
T ss_pred hhcchhhhhhhhhhheecCCC------cEEEEEEEEecCCcEEEEecC-cEEEccCCce
Confidence 477899999999999988542 478887654 5777788896 6999999987
No 86
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.78 E-value=1.8e-08 Score=108.61 Aligned_cols=57 Identities=26% Similarity=0.441 Sum_probs=43.8
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCC-EEEEEEeccEEEecccCC
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKK-KLRRARAKKEVISSAGAI 375 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g-~~~~i~A~k~VVLAAGai 375 (731)
+++..+.+ ++|++|++++.+.+|+.++. . .+.||.+...+ ...+++|+ .||||+|++
T Consensus 138 ~L~~~v~~-~p~I~v~e~~~a~~li~~~~-~-----~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~ 195 (518)
T COG0029 138 ALLKKVRN-RPNITVLEGAEALDLIIEDG-I-----GVAGVLVLNRNGELGTFRAK-AVVLATGGL 195 (518)
T ss_pred HHHHHHhc-CCCcEEEecchhhhhhhcCC-c-----eEeEEEEecCCCeEEEEecC-eEEEecCCC
Confidence 33444444 79999999999999999853 2 35599887653 57889998 699999974
No 87
>KOG2844|consensus
Probab=98.75 E-value=3.2e-08 Score=109.06 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=113.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCe-EEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccCCCCee
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRC 192 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 192 (731)
.....||||||+|..|+.+|++||+. |.+ ++++|+-.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~~----------------------------------------- 73 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERSR----------------------------------------- 73 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHc-cccceEEEeeee-----------------------------------------
Confidence 34479999999999999999999999 999 55555542
Q ss_pred Eeecceeeechhhhhcceee--cCCHhhHHHHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCC
Q psy7389 193 YWARGKVMGGSSTINYMIYA--RGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLP 270 (731)
Q Consensus 193 ~~~~g~~lGG~S~~n~~~~~--r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~ 270 (731)
.--|++.+-++.+. ++.+.+.+..+. +-...|.+.|+..+. ...++ ..|.+.++...
T Consensus 74 ------ltsgttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEtgl-----~tGwi-q~G~~~lAs~~ 132 (856)
T KOG2844|consen 74 ------LTSGTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEETGL-----HTGWI-QNGGIFLASNR 132 (856)
T ss_pred ------eccccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhcCC-----Cccee-cCCceEEecCH
Confidence 11223333333333 444444444432 122334444444332 22344 56777777665
Q ss_pred CCCChHHHHHHHHHHcCCCCCCCCCC------------CCCCc------cccCCChhhhccHhhHhcCCCeEEEcCcEEE
Q psy7389 271 YADKNLPVLIKAWKEKGYPERDLNAE------------NQVGG------FICGDSTNGAFIRPIRKKRKNLTILTEAHVT 332 (731)
Q Consensus 271 ~~~~~~~~~~~~~~~~G~~~~~~~~~------------~~~G~------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~ 332 (731)
......+++.......|.+...++.. +..|. .-+--......|+.+++ +.|+.|+++|.|+
T Consensus 133 ~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~-~~GA~viE~cpV~ 211 (856)
T KOG2844|consen 133 QRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAAS-ALGALVIENCPVT 211 (856)
T ss_pred HHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHH-hcCcEEEecCCcc
Confidence 43333444444444455543222211 11111 00100223344666666 7899999999999
Q ss_pred EEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 333 RIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 333 ~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
+|....+ ...||++..+ .|++. .||-||| ||.-.+-.++|+.
T Consensus 212 ~i~~~~~-------~~~gVeT~~G----~iet~-~~VNaaG-vWAr~Vg~m~gvk 253 (856)
T KOG2844|consen 212 GLHVETD-------KFGGVETPHG----SIETE-CVVNAAG-VWAREVGAMAGVK 253 (856)
T ss_pred eEEeecC-------CccceeccCc----ceecc-eEEechh-HHHHHhhhhcCCc
Confidence 9998753 2348886654 79998 4999999 4555555666643
No 88
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.74 E-value=8.9e-09 Score=114.93 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
|.+.+. ..|++|+.++.|..++.+ ++ +++||.+...+...+|+|+ .||-|+| ...|+.++|.
T Consensus 96 l~~~l~-e~gv~v~~~t~v~~v~~~--~~-----~i~~V~~~~~~g~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLA-EAGVEVLLGTRVVDVIRD--GG-----RITGVIVETKSGRKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccc--cc-----ccccccccccccccccccc-ccccccc---cccccccccc
Confidence 444455 689999999999999997 35 8999998764447899998 6999999 3577777765
No 89
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.72 E-value=2.7e-08 Score=111.11 Aligned_cols=34 Identities=47% Similarity=0.594 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|||||||+|++|+++|+.||++ |++|+||||+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 69999999999999999999999 99999999985
No 90
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.71 E-value=9.1e-08 Score=105.90 Aligned_cols=36 Identities=47% Similarity=0.774 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
.+|||||||+|++|+++|++||++ |.+|+|||++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~ 37 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSE 37 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 379999999999999999999999 999999999864
No 91
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.70 E-value=5.5e-08 Score=107.24 Aligned_cols=35 Identities=43% Similarity=0.533 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++||||||+|++|+++|++|+++ |.+|+|+|++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 479999999999999999999999 99999999985
No 92
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.70 E-value=6.4e-08 Score=98.50 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++||||||+|.+|+++|.+||++ |++|+|||.-+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc-CceEEEEcccc
Confidence 479999999999999999999999 99999999864
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.66 E-value=1.6e-07 Score=106.50 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+|||||||||.+|+.||..+|+. |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 479999999999999999999998 99999999863
No 94
>PRK10015 oxidoreductase; Provisional
Probab=98.65 E-value=5.3e-08 Score=108.70 Aligned_cols=35 Identities=40% Similarity=0.572 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++|||||||+|++|+++|+.||++ |++|+||||+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~ 38 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGD 38 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 369999999999999999999999 99999999985
No 95
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.59 E-value=6.4e-07 Score=100.79 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=47.4
Q ss_pred hhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeC--CEEEEEEeccEEEecccCCCc
Q psy7389 308 TNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYK--KKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 308 ~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~--g~~~~i~A~k~VVLAAGai~T 377 (731)
+...-|...++ ..|++|+++|.|++|+.+.+++ +.+|+||++..+ +....+.+++.|||++|++..
T Consensus 227 SLV~PL~~~Le-~~GV~f~~~t~VtdL~~~~d~~---~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 227 SLVLPLIKYLE-DHGVDFQYGTKVTDIDFDITGG---KKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCC---ceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 33344555666 7899999999999999863221 128999999863 334456666689999998753
No 96
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.54 E-value=8.3e-07 Score=98.68 Aligned_cols=39 Identities=33% Similarity=0.419 Sum_probs=36.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
|+++|||||||+|.+||++|..||++ |+|||+|||..++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~y 39 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYY 39 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCc
Confidence 46689999999999999999999999 9999999998776
No 97
>KOG0042|consensus
Probab=98.51 E-value=8.5e-08 Score=103.57 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCch
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSP 378 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp 378 (731)
+.|+.+.-+.+|.+++.++++ ++.|+++++ .|+++.|+|+ .||-|||.|.-.
T Consensus 236 r~GA~v~Nh~ev~~Llkd~~~------kv~Ga~~rD~iTG~e~~I~Ak-~VVNATGpfsDs 289 (680)
T KOG0042|consen 236 RNGATVLNHVEVVSLLKDKDG------KVIGARARDHITGKEYEIRAK-VVVNATGPFSDS 289 (680)
T ss_pred hcchhhhhHHHHHHHhhCCCC------ceeeeEEEEeecCcEEEEEEE-EEEeCCCCccHH
Confidence 689999999999999988754 688999987 6999999997 799999987533
No 98
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.50 E-value=1.3e-07 Score=107.12 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=33.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
.+||||||||.+|+++|..||++ |++|+||||....
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCC
Confidence 69999999999999999999999 9999999987654
No 99
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.49 E-value=3e-07 Score=99.09 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=39.0
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHH
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 380 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~L 380 (731)
+...+...+|++|+ +..|+.|..++ + ++.||.... |. .+.|+ .||||+|.|.+..+
T Consensus 101 ~~~~l~~~~nl~i~-~~~V~~l~~e~--~-----~v~GV~~~~-g~--~~~a~-~vVlaTGtfl~G~~ 156 (392)
T PF01134_consen 101 MREKLESHPNLTII-QGEVTDLIVEN--G-----KVKGVVTKD-GE--EIEAD-AVVLATGTFLNGCI 156 (392)
T ss_dssp HHHHHHTSTTEEEE-ES-EEEEEECT--T-----EEEEEEETT-SE--EEEEC-EEEE-TTTGBTSEE
T ss_pred HHHHHhcCCCeEEE-EcccceEEecC--C-----eEEEEEeCC-CC--EEecC-EEEEecccccCcee
Confidence 43444425899997 57899999874 4 899988654 33 68998 69999999654444
No 100
>KOG1298|consensus
Probab=98.46 E-value=4.6e-07 Score=94.29 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=33.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+..+||||||+|.+|+++|+.|+++ |.||+||||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEecc
Confidence 44589999999999999999999999 9999999996
No 101
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.44 E-value=2.7e-06 Score=92.00 Aligned_cols=85 Identities=24% Similarity=0.243 Sum_probs=59.6
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCCcccc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHL 392 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l 392 (731)
+..+.+ ..|++|..+++|+.|...+++. ..+-|.-..++....|+|+ -|+|.||+ .+=.||++|||.
T Consensus 188 ~~~l~~-~~~~~~~~~~eV~~i~r~~dg~-----W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~----- 254 (488)
T PF06039_consen 188 VEYLQK-QKGFELHLNHEVTDIKRNGDGR-----WEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP----- 254 (488)
T ss_pred HHHHHh-CCCcEEEecCEeCeeEECCCCC-----EEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh-----
Confidence 343444 6699999999999999986553 2222332345677899998 79999998 688899999884
Q ss_pred cccCccceeecCccccccccccCceEEEEec
Q psy7389 393 TSLNIKTLVDLKVGHNLQDHLTSDGIVIAFP 423 (731)
Q Consensus 393 ~~~gi~~~~~~pVG~nL~dH~~~~~~~~~~~ 423 (731)
=|+++..=|+. +..+..+
T Consensus 255 ------------e~~gyggfPVs-G~fl~~~ 272 (488)
T PF06039_consen 255 ------------EGKGYGGFPVS-GQFLRCK 272 (488)
T ss_pred ------------hhcccCCCccc-ceEEecC
Confidence 45666666666 3334433
No 102
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.43 E-value=2.3e-06 Score=95.45 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=35.7
Q ss_pred cCCCCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 111 EQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 111 ~~~~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...+...|||+|||+|++|+++|..|+++ |++|+|||+.+
T Consensus 12 ~~~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 51 (415)
T PRK07364 12 PSTRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQP 51 (415)
T ss_pred CCCCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCC
Confidence 33445579999999999999999999999 99999999985
No 103
>KOG2415|consensus
Probab=98.43 E-value=4.7e-07 Score=94.86 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=54.1
Q ss_pred ChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeC-----C-------EEEEEEeccEEEecccC
Q psy7389 307 STNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYK-----K-------KLRRARAKKEVISSAGA 374 (731)
Q Consensus 307 s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~-----g-------~~~~i~A~k~VVLAAGa 374 (731)
+....||.+-++ ..|++|+.+..+..+++++++ .|.||.+.+- | +-..++|+ ..|+|-|.
T Consensus 183 ~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edg------sVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc 254 (621)
T KOG2415|consen 183 GQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDG------SVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHH-hhCceeccccchhheeEcCCC------cEeeEeeccccccCCCCccccccccceecce-eEEEeccc
Confidence 455667877777 789999999999999999865 5888876541 1 12468897 78998886
Q ss_pred CC--chHHHhhcCCC
Q psy7389 375 IN--SPKILMLSGIG 387 (731)
Q Consensus 375 i~--Tp~LLl~SGig 387 (731)
-+ |-+++.+-++.
T Consensus 255 ~G~Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 255 HGSLSKQIIKKFDLR 269 (621)
T ss_pred cchhHHHHHHHhCcc
Confidence 65 67787665443
No 104
>KOG2853|consensus
Probab=98.41 E-value=7.3e-06 Score=84.11 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=35.2
Q ss_pred cCCCCCcccEEEECCChhHHHHHHHHhh---cCCCeEEEEecCC
Q psy7389 111 EQDGDMTFDFIIIGAGSAGCVLANRLSE---IKKWKVLLLEAGI 151 (731)
Q Consensus 111 ~~~~~~~~DvIIVGsG~aG~~aA~~LA~---~~G~~VlVLEaG~ 151 (731)
.+....++||+|||+|..|+++|+-|-+ +.|++|+|+|+..
T Consensus 80 ~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 80 NEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 4556679999999999999999999866 3479999999975
No 105
>PRK06185 hypothetical protein; Provisional
Probab=98.41 E-value=3.3e-06 Score=93.85 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 3579999999999999999999998 99999999974
No 106
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.38 E-value=2.2e-06 Score=94.95 Aligned_cols=30 Identities=43% Similarity=0.522 Sum_probs=28.7
Q ss_pred EEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 121 IIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 121 IIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||+|++|+++|.+|+++ |++|+||||.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCc
Confidence 6999999999999999998 99999999985
No 107
>PRK07208 hypothetical protein; Provisional
Probab=98.38 E-value=9.1e-06 Score=92.44 Aligned_cols=39 Identities=33% Similarity=0.319 Sum_probs=35.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
|+...||||||||.+|+++|++|+++ |++|+|||+.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~ 39 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVV 39 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 34578999999999999999999999 9999999997654
No 108
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.37 E-value=1.1e-05 Score=88.17 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=47.1
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhc
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLS 384 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~S 384 (731)
|..+++ +.|++++.++.|+++..++ + ++++|.+.. +....++|+ .||||+|++-|..|+...
T Consensus 269 L~~~~~-~~Gg~il~g~~V~~i~~~~--~-----~v~~V~t~~-g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFE-QLGGVMLPGDRVLRAEFEG--N-----RVTRIHTRN-HRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHH-HCCCEEEECcEEEEEEeeC--C-----eEEEEEecC-CccceEECC-EEEEccCCCcCHHHHhhc
Confidence 444555 6799999999999999873 4 787776533 324579999 599999998788887654
No 109
>PRK06370 mercuric reductase; Validated
Probab=98.36 E-value=7e-06 Score=92.90 Aligned_cols=37 Identities=43% Similarity=0.636 Sum_probs=34.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|..+|||||||||++|+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 44579999999999999999999999 99999999863
No 110
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.36 E-value=4.9e-07 Score=90.10 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=37.8
Q ss_pred hhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcC
Q psy7389 309 NGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSG 385 (731)
Q Consensus 309 ~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SG 385 (731)
...||...++ +.+++++.++.|+++..+++ + - -|.+. ++ .+++|+ .||||+|.+..|+++..-|
T Consensus 84 v~~yl~~~~~-~~~l~i~~~~~V~~v~~~~~-~-----w--~v~~~-~~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 84 VLDYLQEYAE-RFGLEIRFNTRVESVRRDGD-G-----W--TVTTR-DG--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHH-HTTGGEETS--EEEEEEETT-T-----E--EEEET-TS---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHHHHh-hcCcccccCCEEEEEEEecc-E-----E--EEEEE-ec--ceeeee-eEEEeeeccCCCCcccccc
Confidence 3446766666 67888999999999998842 1 1 23332 23 578898 5999999999999876444
No 111
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.35 E-value=1.6e-06 Score=86.55 Aligned_cols=32 Identities=38% Similarity=0.488 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+++|||+|++|+++|..|.++ |++|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCC
Confidence 699999999999999999999 99999999995
No 112
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.33 E-value=6e-06 Score=92.74 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
....+|+|||+|++|+++|.+|.++ |++|+|+|++.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 3468999999999999999999999 99999999985
No 113
>KOG2404|consensus
Probab=98.31 E-value=3.3e-06 Score=85.96 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=39.9
Q ss_pred CeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe-CCEEEEEEeccEEEecccCCCc
Q psy7389 322 NLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 322 g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~-~g~~~~i~A~k~VVLAAGai~T 377 (731)
-++|..+++|++|+.+ .+ ++.||++.+ +|.+..+.++ .||+|+|+|.-
T Consensus 159 ~~ki~~nskvv~il~n--~g-----kVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NG-----KVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CC-----eEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 3789999999999954 34 899999987 5666677887 69999999985
No 114
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.31 E-value=8.2e-06 Score=90.17 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=44.0
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHH
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
|....+ +.|++|++++.|+++..++ + +++++. ..++....++|+ .||||+|.+.+.-|.
T Consensus 265 L~~~l~-~~Gv~I~~g~~V~~v~~~~--~-----~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 265 LRRAFE-RLGGRIMPGDEVLGAEFEG--G-----RVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEEeC--C-----EEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence 444555 6799999999999998763 3 566655 345556689998 699999988666653
No 115
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.26 E-value=1.5e-05 Score=90.09 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.|||||||||++|+.+|.+|++. |++|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 38999999999999999999998 9999999994
No 116
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.26 E-value=1.5e-05 Score=90.10 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+|||||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 379999999999999999999999 99999999874
No 117
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.25 E-value=7.5e-06 Score=92.16 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+||+||||||++|+.+|.+||+. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 69999999999999999999999 9999999985
No 118
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.24 E-value=7.9e-06 Score=92.48 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||||||||++|+++|.+|++. |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999864
No 119
>PLN02985 squalene monooxygenase
Probab=98.24 E-value=1.7e-05 Score=90.39 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=33.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+..+||||||+|++|+++|..|+++ |++|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 34579999999999999999999999 99999999964
No 120
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.24 E-value=6.6e-06 Score=93.48 Aligned_cols=33 Identities=42% Similarity=0.685 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||||||+|.+|+.+|..+|+. |.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999998 99999999873
No 121
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.24 E-value=5.7e-06 Score=91.43 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
|||||||+|++|+++|+.||++ |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999999 9999999986
No 122
>KOG4254|consensus
Probab=98.23 E-value=3.2e-06 Score=89.93 Aligned_cols=65 Identities=26% Similarity=0.238 Sum_probs=49.5
Q ss_pred CChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 306 DSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 306 ~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
.++....+.+.++ +.|.+|++++.|.+|+.|+ + ++.||...++. .++++ .||--|+-+.|=.=|+
T Consensus 263 ~Gavs~aia~~~~-~~GaeI~tka~Vq~Illd~--g-----ka~GV~L~dG~---ev~sk-~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 263 MGAVSFAIAEGAK-RAGAEIFTKATVQSILLDS--G-----KAVGVRLADGT---EVRSK-IVVSNATPWDTFEKLL 327 (561)
T ss_pred hhHHHHHHHHHHH-hccceeeehhhhhheeccC--C-----eEEEEEecCCc---EEEee-eeecCCchHHHHHHhC
Confidence 3555555777777 8999999999999999995 4 89999987763 57775 6777777776664444
No 123
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.19 E-value=8.9e-06 Score=90.07 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+||||||+|++|+++|..||++ |++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6899999999999999999999 99999999863
No 124
>PRK08244 hypothetical protein; Provisional
Probab=98.19 E-value=2e-05 Score=89.90 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 58999999999999999999999 99999999975
No 125
>PRK06126 hypothetical protein; Provisional
Probab=98.15 E-value=3.4e-05 Score=89.27 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++||+|||+|++|+++|..|++. |++|+|+||.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 479999999999999999999999 99999999874
No 126
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.13 E-value=7.3e-06 Score=93.97 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
..|++|+++++|++|+.+ ++ ++.||++.+ ++....|+|+ .||+|||+ ++..|+...|+
T Consensus 140 ~~Ga~i~~~t~V~~i~~~--~~-----~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIRE--GG-----RVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HcCCEEEcCcEEEEEEEE--CC-----EEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 589999999999999976 34 788888864 4556789998 59999995 78888877765
No 127
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.11 E-value=6.3e-06 Score=88.94 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=61.8
Q ss_pred CCCceeeecCCCCCChHHHHHHHHHHcCCCCCCCCC-----------CCCC-Cc-------cccCCChhhhccHhhHhcC
Q psy7389 260 KGGYQTVEWLPYADKNLPVLIKAWKEKGYPERDLNA-----------ENQV-GG-------FICGDSTNGAFIRPIRKKR 320 (731)
Q Consensus 260 ~~G~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-----------~~~~-G~-------~r~~~s~~~~~L~~a~~~~ 320 (731)
..|.+.+...+......+...+..++.|.+...++. .... |. ... ..+...|...+. .
T Consensus 73 ~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p--~~l~~~l~~~~~-~ 149 (337)
T TIGR02352 73 QCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDP--RALLKALEKALE-K 149 (337)
T ss_pred EccEEEEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCCceECh--HHHHHHHHHHHH-H
Confidence 567777766544444445555556666654321111 0111 11 111 223333444444 5
Q ss_pred CCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHH
Q psy7389 321 KNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKI 380 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~L 380 (731)
.|++|+.+++|+.|..+ ++ ++++|.... + +++|+ .||+|+|+ +++.|
T Consensus 150 ~g~~~~~~~~v~~i~~~--~~-----~~~~v~~~~-g---~~~a~-~vV~a~G~-~~~~l 196 (337)
T TIGR02352 150 LGVEIIEHTEVQHIEIR--GE-----KVTAIVTPS-G---DVQAD-QVVLAAGA-WAGEL 196 (337)
T ss_pred cCCEEEccceEEEEEee--CC-----EEEEEEcCC-C---EEECC-EEEEcCCh-hhhhc
Confidence 79999999999999875 34 677776422 2 68998 59999996 56654
No 128
>PRK06847 hypothetical protein; Provisional
Probab=98.11 E-value=4.3e-05 Score=83.91 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+..||+|||+|++|+++|..|++. |.+|+|+|+..
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 3468999999999999999999998 99999999974
No 129
>KOG2665|consensus
Probab=98.11 E-value=1.8e-05 Score=80.47 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=109.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccCCCCee
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKARPNGRC 192 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 192 (731)
-.+.||.||||+|..|++.|.+|.-+ |+++|+|||+....... |.+...+.....+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h-----------------------qSghNSgViHaGI 101 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH-----------------------QSGHNSGVIHAGI 101 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhcee-----------------------ecccccceeeeee
Confidence 34589999999999999999999875 89999999997522100 0000000111111
Q ss_pred EeecceeeechhhhhcceeecCCHhhHHHHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCceeeecCCCC
Q psy7389 193 YWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYA 272 (731)
Q Consensus 193 ~~~~g~~lGG~S~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~~~~~~~~ 272 (731)
.+.-+. .-+-.|.++..- +..|.++-+ -++. ..|++-++..+..
T Consensus 102 YY~P~S-------LKAklCV~G~~L-----------------lY~yc~e~~-----------IpyK-k~GKLIVAt~~~E 145 (453)
T KOG2665|consen 102 YYKPGS-------LKAKLCVEGREL-----------------LYEYCDEKK-----------IPYK-KTGKLIVATESEE 145 (453)
T ss_pred eeCCcc-------cchhhhhccHHH-----------------HHHHhhhcC-----------CChh-hcceEEEEeChhh
Confidence 111110 001111111111 112222211 1122 5788888877777
Q ss_pred CChHHHHHHHHHHcCCCC-CCCCCCCC------C-Cc----------cccCCChhhhccHhhHhcCCCeEEEcCcEEEEE
Q psy7389 273 DKNLPVLIKAWKEKGYPE-RDLNAENQ------V-GG----------FICGDSTNGAFIRPIRKKRKNLTILTEAHVTRI 334 (731)
Q Consensus 273 ~~~~~~~~~~~~~~G~~~-~~~~~~~~------~-G~----------~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I 334 (731)
-+..+.+.+.....|++- ..+.+.+. | |. ..+ .+....|-.+ .+ ..|-++.++-+|.++
T Consensus 146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~-~~v~ls~~ed-F~-~~gg~i~~n~~l~g~ 222 (453)
T KOG2665|consen 146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDW-GSVTLSFGED-FD-FMGGRIYTNFRLQGI 222 (453)
T ss_pred cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeeh-HHHHHHHHHH-HH-Hhcccccccceeccc
Confidence 777777777766666654 22222211 1 11 111 0222233344 33 468899999999999
Q ss_pred EecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCC
Q psy7389 335 IFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 388 (731)
Q Consensus 335 ~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~ 388 (731)
..+.... .-.-+. ..+++-.+++.+ .||-||| +.+-++-..||...
T Consensus 223 ~~n~~~~-----~~Ypiv-v~ngk~ee~r~~-~~vtc~g-l~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 223 AQNKEAT-----FSYPIV-VLNGKGEEKRTK-NVVTCAG-LQSDRCAALSGCEL 268 (453)
T ss_pred hhccCCC-----CCCceE-EecCccceeEEe-EEEEecc-ccHhHHHHHhCCCC
Confidence 8654321 001122 223444567775 3555555 89999999998653
No 130
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.10 E-value=3e-05 Score=89.51 Aligned_cols=35 Identities=40% Similarity=0.522 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 479999999999999999999998 99999999985
No 131
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.09 E-value=1.5e-05 Score=87.94 Aligned_cols=33 Identities=42% Similarity=0.565 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+||||||+|++|+++|..|+++ |++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 58999999999999999999999 9999999997
No 132
>PRK06184 hypothetical protein; Provisional
Probab=98.09 E-value=2.8e-05 Score=88.92 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++||+|||+|++|+++|..|+++ |.+|+||||.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 69999999999999999999999 99999999975
No 133
>PLN02507 glutathione reductase
Probab=98.08 E-value=1.6e-05 Score=90.63 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEec
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEa 149 (731)
.+||+||||||++|..+|.+|++. |++|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 379999999999999999999999 999999996
No 134
>PLN02697 lycopene epsilon cyclase
Probab=98.07 E-value=2.1e-05 Score=89.33 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
...|||||||+|++|+++|..|+++ |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 3469999999999999999999998 9999999975
No 135
>KOG2852|consensus
Probab=98.05 E-value=2.9e-06 Score=85.21 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=43.9
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe-CCEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~-~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
.|..|.+ +.|++++.+ .|..+. ++ .. |+.+|...- .+......+. .||||+|. ||++||..-+|
T Consensus 153 i~sea~k-~~~V~lv~G-kv~ev~-dE-k~-----r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEK-RGGVKLVFG-KVKEVS-DE-KH-----RINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHh-hcCeEEEEe-eeEEee-cc-cc-----cccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 3566666 788999988 577775 32 23 777775542 2333456677 59999997 89999887655
No 136
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.04 E-value=8.6e-05 Score=85.92 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+..+||+|||+|++|+++|..|++. |.+|+|+||.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3579999999999999999999998 99999999975
No 137
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.04 E-value=2.3e-05 Score=87.07 Aligned_cols=35 Identities=43% Similarity=0.669 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..+||+||||+|++|.++|.++|+. |.+|+++|++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~ 36 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKG 36 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeec
Confidence 3589999999999999999999999 9999999998
No 138
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.04 E-value=2.7e-05 Score=86.17 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=32.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||+|||+|++|+++|..|+++ |++|+|||+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 58999999999999999999999 99999999985
No 139
>PRK07190 hypothetical protein; Provisional
Probab=98.03 E-value=4.8e-05 Score=86.34 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||||||+|++|+++|..|+++ |.+|+||||.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 68999999999999999999999 99999999985
No 140
>PRK06834 hypothetical protein; Provisional
Probab=98.02 E-value=5.4e-05 Score=86.05 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 69999999999999999999999 99999999975
No 141
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=1.1e-05 Score=88.29 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+|||||||+|-+|+-||...|+- |.++++|=-.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcC
Confidence 469999999999999999999998 9999999755
No 142
>PRK11445 putative oxidoreductase; Provisional
Probab=98.02 E-value=7.7e-05 Score=81.20 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||+|||+|++|+++|..|+++ .+|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence 8999999999999999999985 8999999875
No 143
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.98 E-value=7.3e-05 Score=83.69 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCe-EEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG~ 151 (731)
+.+.+||+|||+|++|+++|++|.++ |.. ++||||..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~ 42 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRD 42 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccC
Confidence 34589999999999999999999999 988 99999985
No 144
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.98 E-value=6.1e-05 Score=82.77 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+||+|||+|++|+++|..|++. |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999999 99999999874
No 145
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.98 E-value=8.5e-06 Score=65.85 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=27.6
Q ss_pred EECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 122 IIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 122 IVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
|||||++|+++|++|+++ |.+|+|+|+...
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcc
Confidence 899999999999999999 999999999864
No 146
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=0.00011 Score=85.18 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=46.2
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
.|.+.+. +.|++|+.++.|++|+.+++ + +|+||...+ ++....|+|+ .||||||++..
T Consensus 131 ~L~~~~~-~~gi~i~~~~~~~~Li~~~~-g-----~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNL-KNGTTFLNEWYAVDLVKNQD-G-----AVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHHHh-ccCCEEEECcEEEEEEEcCC-C-----eEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 3444454 67999999999999998643 4 899998754 5777789998 79999999764
No 147
>PRK07538 hypothetical protein; Provisional
Probab=97.94 E-value=7.4e-05 Score=83.28 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 799999999999999999999 99999999975
No 148
>PRK07588 hypothetical protein; Provisional
Probab=97.87 E-value=0.00014 Score=80.51 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||+|||||++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 799999999999999999998 99999999974
No 149
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.86 E-value=0.00023 Score=76.65 Aligned_cols=209 Identities=20% Similarity=0.206 Sum_probs=105.0
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhc----CCCeEEEEecCCCCCCccCCCCccccccCCCCCCCcccCCCccccccC
Q psy7389 112 QDGDMTFDFIIIGAGSAGCVLANRLSEI----KKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTMPDPHACKAR 187 (731)
Q Consensus 112 ~~~~~~~DvIIVGsG~aG~~aA~~LA~~----~G~~VlVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~ 187 (731)
..|...||+||||+|.+|+.+|++||.. +.++|+++|.|...+.. ..|... .....|...
T Consensus 13 ~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r-~~~~~~---------------~~~~~c~~~ 76 (486)
T COG2509 13 ALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR-LCPKDE---------------KKLEKCPKC 76 (486)
T ss_pred HHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh-hccccc---------------cchhhcCCC
Confidence 4456689999999999999999999974 37899999999754211 001000 000111111
Q ss_pred CCCeeEeecceeeechhhhhcceee-cCC-HhhHHHHHHcCCCCCChhhHHHHHHHhhcCCCcccccCCCCCCCCCCcee
Q psy7389 188 PNGRCYWARGKVMGGSSTINYMIYA-RGN-AEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQT 265 (731)
Q Consensus 188 ~~~~~~~~~g~~lGG~S~~n~~~~~-r~~-~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~g~~G~l~ 265 (731)
. .+.+. .++||+.....+.+. ++. -.++.+.. .+| ..+++...- ... ....+ |..|.-.
T Consensus 77 ~--~~~I~--~G~GgaG~fs~g~lnl~P~~Gg~~~~~~----~d~-----~~~~~~~~~-vd~----~~vqf-G~~g~~~ 137 (486)
T COG2509 77 D--PCPIV--IGFGGAGLFSDGILNLRPIRGGDVHERT----KDT-----DEFWELVNL-VDE----SNVQF-GAPGAGT 137 (486)
T ss_pred C--CceeE--ecccccccccccceecccccccchhhhh----CCh-----HHHHHHHhc-cch----hheec-CCCcCcc
Confidence 1 23333 347888888777666 221 11111110 111 111222111 100 01111 1111100
Q ss_pred eecCCCCCChHHHHH-HHHHHcCCCCCCCC-CCCCCCccccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCC
Q psy7389 266 VEWLPYADKNLPVLI-KAWKEKGYPERDLN-AENQVGGFICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKH 343 (731)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~G~~~~~~~-~~~~~G~~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~ 343 (731)
. .+....+. ...++.|.+..-+. .....|..+. -....-+.+-.. ..|++|+.+|+|+.|++++ +
T Consensus 138 --~----~~~~e~ikd~e~~aa~a~~eil~~~~rHiGTD~l--~~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~--~-- 204 (486)
T COG2509 138 --F----SDLTEQIKDIEFRAAGAGEEILPIYQRHIGTDIL--PKVVKNIREYLE-SLGGEIRFNTEVEDIEIED--N-- 204 (486)
T ss_pred --c----CCchhhhhHHHHHHhCCCceeeeccccccCccch--HHHHHHHHHHHH-hcCcEEEeeeEEEEEEecC--C--
Confidence 0 11112222 22344555442221 1112222111 111222344445 6899999999999999985 3
Q ss_pred CceEEEEEEEEeCCEEEEEEeccEEEecccCC
Q psy7389 344 KKLVAKSVEFFYKKKLRRARAKKEVISSAGAI 375 (731)
Q Consensus 344 ~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai 375 (731)
.+.+|...++ ..+.++ .||||-|--
T Consensus 205 ---~~~~v~~~~g---~~i~~~-~vvlA~Grs 229 (486)
T COG2509 205 ---EVLGVKLTKG---EEIEAD-YVVLAPGRS 229 (486)
T ss_pred ---ceEEEEccCC---cEEecC-EEEEccCcc
Confidence 4667765554 378998 699999943
No 150
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00022 Score=77.16 Aligned_cols=36 Identities=42% Similarity=0.502 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
..+||||||+|++||++|+.|.++ |++|+|||+-+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r 41 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDR 41 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCC
Confidence 479999999999999999999999 999999998763
No 151
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.81 E-value=0.00013 Score=83.21 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=27.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|+|||+|++|+++|..|.+. |++|+++||.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~ 34 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSD 34 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCC
Confidence 389999999999999999999 99999999986
No 152
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.78 E-value=2.4e-05 Score=87.82 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..|||||||+|++|+++|..||++ |++|+|||+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 379999999999999999999999 99999999963
No 153
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.78 E-value=0.00015 Score=83.08 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
...|||+|||||++|+++|.+|++. |++|+|+|..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC
Confidence 4579999999999999999999998 9999999753
No 154
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.78 E-value=2.3e-05 Score=84.85 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||+|++|+++|..|+++ |++|+|+||.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~ 34 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRP 34 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcc
Confidence 48999999999999999999999 99999999975
No 155
>PRK06116 glutathione reductase; Validated
Probab=97.76 E-value=2.4e-05 Score=88.25 Aligned_cols=35 Identities=43% Similarity=0.590 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..+|||||||||++|+.+|.+|++. |++|+|+|++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 3579999999999999999999999 9999999986
No 156
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.76 E-value=2.4e-05 Score=82.51 Aligned_cols=33 Identities=42% Similarity=0.712 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||+|||+|++|+++|..|++. |.+|+|||+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~ 33 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKS 33 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 7999999999999999999998 99999999985
No 157
>KOG1399|consensus
Probab=97.76 E-value=0.00015 Score=80.48 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.-+|+|||+|++||++|+.|.++ |+.|+|+||.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecC
Confidence 46899999999999999999999 99999999986
No 158
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.74 E-value=2.2e-05 Score=88.44 Aligned_cols=33 Identities=42% Similarity=0.671 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+|||||||||++|+.+|.+|++. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc
Confidence 69999999999999999999999 9999999986
No 159
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=2.4e-05 Score=88.70 Aligned_cols=36 Identities=36% Similarity=0.596 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
|...||+||||||++|+.+|.+|++. |++|+|+|++
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~ 36 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG 36 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 34589999999999999999999999 9999999986
No 160
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.67 E-value=4e-05 Score=84.74 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...+||+|||+|++|+++|+.|+++ |.+|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 3479999999999999999999999 99999999975
No 161
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=3.8e-05 Score=87.03 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+||+||||||++|+++|.+|++. |++|+|+|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 369999999999999999999999 9999999986
No 162
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.65 E-value=4.3e-05 Score=84.50 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 479999999999999999999999 99999999974
No 163
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.64 E-value=4.3e-05 Score=87.21 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=43.9
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
.|.+.++ +.|++|++++.|++|..++ + ++.||++.++ . ++.|+ .||+|+|...+-..|+
T Consensus 234 ~L~~~~~-~~G~~i~~~~~V~~I~~~~--~-----~~~gv~~~~g-~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 234 SLVKGLE-KHGGQIRYRARVTKIILEN--G-----KAVGVKLADG-E--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHH-HCCCEEEeCCeeeEEEecC--C-----cEEEEEeCCC-C--EEEcC-EEEECCChHHHHHHhC
Confidence 3555555 7899999999999999873 4 6888876543 2 57898 5999999866655444
No 164
>PLN02463 lycopene beta cyclase
Probab=97.64 E-value=7e-05 Score=83.76 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 469999999999999999999998 99999999864
No 165
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.63 E-value=4.8e-05 Score=85.53 Aligned_cols=34 Identities=38% Similarity=0.661 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||||++|+.+|.+||+. |++|+|+|+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence 69999999999999999999999 99999999975
No 166
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.63 E-value=5.1e-05 Score=83.82 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..|||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 469999999999999999999998 99999999974
No 167
>PRK09897 hypothetical protein; Provisional
Probab=97.62 E-value=0.00097 Score=76.00 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
.+|+|||+|++|+.+|.+|++. ...+|+|+|++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 3799999999999999999985 246999999975
No 168
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=5.8e-05 Score=77.49 Aligned_cols=36 Identities=33% Similarity=0.611 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~ 154 (731)
||++|||||.+|+++|..||+. |++||||||-++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCC
Confidence 8999999999999999988888 99999999988763
No 169
>PTZ00058 glutathione reductase; Provisional
Probab=97.61 E-value=4.8e-05 Score=87.39 Aligned_cols=33 Identities=42% Similarity=0.636 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+||+||||+|++|..+|.++|+. |++|+|+|++
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~ 80 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD 80 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc
Confidence 79999999999999999999999 9999999986
No 170
>KOG2311|consensus
Probab=97.61 E-value=0.00012 Score=78.52 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=31.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+..|||||||+|-+||-+|...|+- |.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence 4589999999999999999999998 9999998754
No 171
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.60 E-value=0.00023 Score=80.02 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=37.2
Q ss_pred ChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEeccc
Q psy7389 307 STNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAG 373 (731)
Q Consensus 307 s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAG 373 (731)
.....+|.+.+. ..|++++.++ |+.+..++ ++ .+++|...+ | .+|+|+ -||=|+|
T Consensus 154 ~~fd~~L~~~A~-~~Gv~~~~g~-V~~v~~~~-~g-----~i~~v~~~~-g--~~i~ad-~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHAE-ERGVEVIEGT-VVDVELDE-DG-----RITAVRLDD-G--RTIEAD-FFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHH-HTT-EEEET--EEEEEE-T-TS-----EEEEEEETT-S--EEEEES-EEEE-SG
T ss_pred HHHHHHHHHHHh-cCCCEEEeCE-EEEEEEcC-CC-----CEEEEEECC-C--CEEEEe-EEEECCC
Confidence 345566766665 5799999885 88888876 34 788887655 3 378998 7888998
No 172
>PRK09126 hypothetical protein; Provisional
Probab=97.60 E-value=5.2e-05 Score=83.82 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||+|++|+++|..|+++ |++|+|+|+..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 69999999999999999999999 99999999986
No 173
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.59 E-value=6e-05 Score=83.20 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||||||+|++|+++|+.|++. |.+|+|||+++
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 38 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRA 38 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 68999999999999999999998 99999999986
No 174
>PRK08013 oxidoreductase; Provisional
Probab=97.58 E-value=6.4e-05 Score=83.42 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||+|++|+++|..|+++ |++|+|||+.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCC
Confidence 59999999999999999999998 99999999985
No 175
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=6.5e-05 Score=85.06 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+||+||||+|++|+++|.+||+. |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 59999999999999999999999 9999999973
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.56 E-value=6.5e-05 Score=86.82 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...|||||||||++|+++|.+|++. |++|+|+|++.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~ 37 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD 37 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 3469999999999999999999998 99999999975
No 177
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.55 E-value=7e-05 Score=84.86 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.+||+||||+|++|..+|.+||+. |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 4579999999999999999999999 99999999864
No 178
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.54 E-value=6.9e-05 Score=83.26 Aligned_cols=34 Identities=41% Similarity=0.604 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999998 99999999975
No 179
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=7.4e-05 Score=79.00 Aligned_cols=35 Identities=43% Similarity=0.583 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCe-EEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG~ 151 (731)
..|||||||||++|++||.+++++ +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence 379999999999999999999999 998 77777763
No 180
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.53 E-value=8.4e-05 Score=80.90 Aligned_cols=35 Identities=46% Similarity=0.732 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
+||+|||||++|+++|.+|++. |.+|+|||+....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 7999999999999999999998 9999999997543
No 181
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.53 E-value=0.00097 Score=77.24 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=46.7
Q ss_pred hhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCc
Q psy7389 310 GAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINS 377 (731)
Q Consensus 310 ~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~T 377 (731)
...|.+.+. +.|++|++++.|++|+.+ ++ +|+||...+ ++....|+|+ .||||||++..
T Consensus 122 ~~~L~~~~~-~~gi~i~~~~~~~~Li~~--~g-----~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 122 LHTLYQQNL-KADTSFFNEYFALDLLME--DG-----ECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHH-hCCCEEEeccEEEEEEee--CC-----EEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 334555555 689999999999999986 35 899998754 5777789997 79999999864
No 182
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.53 E-value=7.8e-05 Score=82.88 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..+||+|||+|++|+++|..|+++ |++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 368999999999999999999998 9999999986
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.53 E-value=8.4e-05 Score=83.52 Aligned_cols=34 Identities=44% Similarity=0.632 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||||||||++|+.+|.+|++. |++|+|+|+++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 69999999999999999999998 99999999975
No 184
>PRK07045 putative monooxygenase; Reviewed
Probab=97.52 E-value=8.2e-05 Score=82.18 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+||+|||+|++|+++|..|+++ |++|+|+||.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAA 38 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCC
Confidence 479999999999999999999999 99999999986
No 185
>PLN02546 glutathione reductase
Probab=97.52 E-value=7.2e-05 Score=85.96 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=32.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEec
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEa 149 (731)
..+|||||||+|++|..+|.+||+. |++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 3479999999999999999999999 999999996
No 186
>PRK13748 putative mercuric reductase; Provisional
Probab=97.51 E-value=8.5e-05 Score=86.28 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+|||||||+|++|+++|.+|++. |++|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 479999999999999999999999 9999999987
No 187
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.51 E-value=8.9e-05 Score=83.89 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+|||||||+|++|+.+|.+|++. |++|+|+|+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 369999999999999999999999 99999999964
No 188
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.51 E-value=0.0004 Score=76.69 Aligned_cols=33 Identities=39% Similarity=0.426 Sum_probs=30.6
Q ss_pred EEEECCChhHHHHHHHHhhcCC--CeEEEEecCCCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGIEE 153 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G--~~VlVLEaG~~~ 153 (731)
++|||||.+|+++|++|.++ + ..|+|+|++++.
T Consensus 3 i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~ 37 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRV 37 (444)
T ss_pred EEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCC
Confidence 89999999999999999999 7 999999998643
No 189
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.51 E-value=8.9e-05 Score=81.77 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||+|||+|++|+++|..|++. |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 58999999999999999999999 99999999864
No 190
>KOG1335|consensus
Probab=97.49 E-value=0.00086 Score=70.47 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||+||||+|++|-+||.+.|+. |++.+.+|+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccC
Confidence 489999999999999999999999 99999999853
No 191
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.48 E-value=9.6e-05 Score=81.33 Aligned_cols=32 Identities=38% Similarity=0.547 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||||+|++|+++|..|+++ |.+|+|+||.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 899999999999999999999 99999999986
No 192
>KOG0029|consensus
Probab=97.47 E-value=0.00013 Score=82.18 Aligned_cols=37 Identities=38% Similarity=0.486 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...+|||||||.+|++||.+|.+. |.+|+|||+-.+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCc
Confidence 368999999999999999999999 9999999997654
No 193
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.0001 Score=83.71 Aligned_cols=34 Identities=41% Similarity=0.643 Sum_probs=32.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEec
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEa 149 (731)
..+||+||||||++|+++|.+|++. |++|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 3479999999999999999999999 999999998
No 194
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.46 E-value=0.00011 Score=83.87 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=45.1
Q ss_pred ChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeC--CEEEEEEeccEEEecccCCCchHH
Q psy7389 307 STNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYK--KKLRRARAKKEVISSAGAINSPKI 380 (731)
Q Consensus 307 s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~--g~~~~i~A~k~VVLAAGai~Tp~L 380 (731)
..+...|.+.++ +.|.+|++++.|++|+.++ + +++||...++ +....+.|+ .||+++....+..|
T Consensus 232 ~~l~~aL~~~~~-~~G~~i~~~~~V~~I~~~~--~-----~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~l 298 (492)
T TIGR02733 232 QTLSDRLVEALK-RDGGNLLTGQRVTAIHTKG--G-----RAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLEL 298 (492)
T ss_pred HHHHHHHHHHHH-hcCCEEeCCceEEEEEEeC--C-----eEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHh
Confidence 334444555665 6799999999999999874 3 6778876543 222468898 59998886544443
No 195
>PTZ00367 squalene epoxidase; Provisional
Probab=97.45 E-value=0.00011 Score=84.52 Aligned_cols=35 Identities=46% Similarity=0.653 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+|||||||+|++|+++|..|+++ |++|+||||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 479999999999999999999999 99999999964
No 196
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.43 E-value=0.00012 Score=77.48 Aligned_cols=33 Identities=39% Similarity=0.529 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||||||||++|+++|..|++. |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999998 99999999874
No 197
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.42 E-value=0.00013 Score=83.29 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..||+||||+|++|+.+|.+|++. |++|+|+|++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 369999999999999999999999 9999999974
No 198
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.42 E-value=0.00012 Score=81.15 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
|||||||+|++|+++|..|+++ +|++|+|||+.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 8999999999999999999998 249999999985
No 199
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.42 E-value=0.00011 Score=85.77 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+|||||||+|++|..+|.++|+. |++|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 379999999999999999999999 9999999975
No 200
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.40 E-value=0.00013 Score=80.50 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||||+|++|+++|..|++. |++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence 899999999999999999998 99999999975
No 201
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.40 E-value=0.00012 Score=82.17 Aligned_cols=33 Identities=45% Similarity=0.672 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhh----cCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSE----IKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~----~~G~~VlVLEaG~ 151 (731)
|||||||+|++|+++|+.|++ + |++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999999 7 99999999953
No 202
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.40 E-value=0.00014 Score=80.00 Aligned_cols=32 Identities=44% Similarity=0.599 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhhcCC-CeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~ 151 (731)
||||||+|++|+++|..|+++ | ++|+|+|+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCC
Confidence 899999999999999999999 9 9999999985
No 203
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.40 E-value=0.00033 Score=77.15 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=37.7
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHH
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
..|..++. + |++|++++.|+.|..++ + + .+|.... + ..++|+ .||+|+|+ +++.|+
T Consensus 139 ~~l~~~~~-~-G~~i~~~~~V~~i~~~~--~-----~-~~v~t~~-g--~~~~a~-~vV~a~G~-~~~~l~ 194 (381)
T TIGR03197 139 RALLAHAG-I-RLTLHFNTEITSLERDG--E-----G-WQLLDAN-G--EVIAAS-VVVLANGA-QAGQLA 194 (381)
T ss_pred HHHHhccC-C-CcEEEeCCEEEEEEEcC--C-----e-EEEEeCC-C--CEEEcC-EEEEcCCc-cccccc
Confidence 34555555 6 99999999999998752 3 3 2344322 2 147898 59999996 555554
No 204
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.37 E-value=0.00016 Score=81.85 Aligned_cols=33 Identities=48% Similarity=0.773 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+||+||||||++|+++|.+|++. |++|+|+|++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 69999999999999999999998 9999999994
No 205
>PRK14694 putative mercuric reductase; Provisional
Probab=97.37 E-value=0.00016 Score=82.00 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 379999999999999999999999 99999999974
No 206
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.35 E-value=0.00016 Score=79.84 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 48999999999999999999999 99999999975
No 207
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.35 E-value=0.00015 Score=83.09 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=44.4
Q ss_pred hhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHh
Q psy7389 310 GAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILM 382 (731)
Q Consensus 310 ~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl 382 (731)
...|.+.++ +.|++|++++.|++|..++ + ++++|++.++ . ++.|+ .||+|++...+...|+
T Consensus 222 ~~al~~~~~-~~G~~i~~~~~V~~i~~~~--~-----~~~~V~~~~g-~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 222 VAAMAKLAE-DLGGELRLNAEVIRIETEG--G-----RATAVHLADG-E--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHH-HCCCEEEECCeEEEEEeeC--C-----EEEEEEECCC-C--EEECC-EEEECCcHHHHHHHhc
Confidence 334555555 6799999999999999873 4 7778876443 2 57898 5999998766666554
No 208
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.34 E-value=0.00017 Score=79.18 Aligned_cols=32 Identities=47% Similarity=0.672 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHH--hhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRL--SEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~L--A~~~G~~VlVLEaG~ 151 (731)
||||||+|++|+++|.+| ++. |++|+|||+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~ 34 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKP 34 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCc
Confidence 899999999999999999 665 99999999975
No 209
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.33 E-value=0.0002 Score=79.33 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...||+|||+|++|+++|..|+++ |++|+|+||.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 468999999999999999999998 99999999975
No 210
>KOG2960|consensus
Probab=97.33 E-value=0.0006 Score=65.81 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhhc-CCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG 150 (731)
+-||||||+|.+|+++|+.++++ |.++|.+||..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 56999999999999999999964 89999999976
No 211
>PLN02268 probable polyamine oxidase
Probab=97.30 E-value=0.00022 Score=79.99 Aligned_cols=34 Identities=38% Similarity=0.518 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
+|||||+|.+|+++|++|.++ |++|+||||.++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 699999999999999999998 9999999998766
No 212
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.30 E-value=0.00021 Score=81.04 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=31.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.+||+||||+|++|..+|.++|+..|++|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 37999999999999999999999328999999985
No 213
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.28 E-value=0.0026 Score=66.25 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
.-++.|||||.+|+++|+.|++. ++|.+.|++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~r 41 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRR 41 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEecccc
Confidence 35699999999999999999985 89999999964
No 214
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.26 E-value=0.00024 Score=80.04 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCC--CeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G--~~VlVLEaG~~~ 153 (731)
+|||||||++|+++|+.|+++ | ++|+|||+.+..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRL 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCC
Confidence 589999999999999999998 7 899999997655
No 215
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.26 E-value=0.00045 Score=80.99 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=34.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh-cCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSE-IKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~-~~G~~VlVLEaG~ 151 (731)
|..++||+|||+|++|+++|..||+ . |.+|+|||+.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence 5668999999999999999999999 7 99999999874
No 216
>PRK07233 hypothetical protein; Provisional
Probab=97.25 E-value=0.00027 Score=79.18 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
+|||||||.+|+++|+.|+++ |++|+|||+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCC
Confidence 589999999999999999999 9999999998765
No 217
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.23 E-value=0.00029 Score=77.15 Aligned_cols=33 Identities=39% Similarity=0.687 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
||||||+|++|+++|.+|+++ +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999984 699999999985
No 218
>PRK07236 hypothetical protein; Provisional
Probab=97.22 E-value=0.0003 Score=77.69 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..||||||||++|+++|..|+++ |.+|+|+|+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 58999999999999999999998 99999999974
No 219
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.22 E-value=0.00031 Score=77.69 Aligned_cols=34 Identities=44% Similarity=0.565 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhhc--CCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI--KKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~--~G~~VlVLEaG 150 (731)
.+||+|||+|++|+++|+.|+++ .|.+|+|+||-
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 69999999999999999999884 39999999995
No 220
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.21 E-value=0.0092 Score=70.30 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
..+|+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCC
Confidence 67899999999999999999998 999999999863
No 221
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.20 E-value=0.0014 Score=70.81 Aligned_cols=35 Identities=37% Similarity=0.406 Sum_probs=27.0
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.||+|+||.|++++++|..|.+....+++.||+-+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 59999999999999999999998459999999875
No 222
>PRK10262 thioredoxin reductase; Provisional
Probab=97.20 E-value=0.00033 Score=75.24 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=32.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+..+||||||+|++|+.+|..|++. |++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee
Confidence 4589999999999999999999999 9999999965
No 223
>PLN02576 protoporphyrinogen oxidase
Probab=97.19 E-value=0.00036 Score=79.81 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
++||||||||.+|+++|++|+++.|.+|+|||+....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 6899999999999999999998537999999998765
No 224
>PRK06753 hypothetical protein; Provisional
Probab=97.18 E-value=0.00032 Score=76.95 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||||||++|+++|..|+++ |++|+|+||.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 799999999999999999999 99999999986
No 225
>PRK06996 hypothetical protein; Provisional
Probab=97.18 E-value=0.00037 Score=77.29 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=32.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCC----CeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKK----WKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G----~~VlVLEaG~ 151 (731)
..+|||+|||+|++|+++|..|+++ | ++|+|+|+..
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence 4579999999999999999999998 6 5899999974
No 226
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.10 E-value=0.00053 Score=67.96 Aligned_cols=32 Identities=41% Similarity=0.527 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||||||||++|+.+|.+|++. |.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999987 99999998764
No 227
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.09 E-value=0.00047 Score=75.49 Aligned_cols=33 Identities=33% Similarity=0.241 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-||+|||||.+|+.+|+.||+. |++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccC
Confidence 4899999999999999999998 99999999875
No 228
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00048 Score=75.95 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=31.8
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
|+|+|+|.+|+++|++||++ |++|.|+|++++.
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~ 35 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDRL 35 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCcc
Confidence 89999999999999999999 9999999999875
No 229
>PLN02568 polyamine oxidase
Probab=97.05 E-value=0.00064 Score=77.96 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCC-----CeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKK-----WKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G-----~~VlVLEaG~~~ 153 (731)
...||||||+|.+|+++|.+|++. | ++|+|||+....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCc
Confidence 357999999999999999999987 6 899999998754
No 230
>PLN02676 polyamine oxidase
Probab=97.03 E-value=0.00062 Score=77.31 Aligned_cols=36 Identities=39% Similarity=0.467 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~~~ 153 (731)
.+||||||+|++|+++|.+|+++ |. +|+|||+....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~ 62 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRI 62 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCC
Confidence 68999999999999999999998 98 69999998765
No 231
>PRK14727 putative mercuric reductase; Provisional
Probab=97.02 E-value=0.00074 Score=76.74 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..||+||||+|++|..+|.+|++. |.+|+|+|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 379999999999999999999998 99999999974
No 232
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.02 E-value=0.00062 Score=77.05 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhc-C--CCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-K--KWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~--G~~VlVLEaG~~~ 153 (731)
..||||||||++|+++|++|+++ + |++|+|||+.+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 36899999999999999999996 3 8999999998765
No 233
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.00 E-value=0.00062 Score=77.34 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+||+||||+|++|..+|.+||+. |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 59999999999999999999998 9999999975
No 234
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.97 E-value=0.00082 Score=82.83 Aligned_cols=63 Identities=14% Similarity=0.038 Sum_probs=47.8
Q ss_pred hhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe-CCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 315 PIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY-KKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 315 ~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~-~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
..++ +.|++|++++.|++|.-+ + ++.+|++.. ++...++.++ .|+++.|...+..|+...|..
T Consensus 359 ~~L~-~~GV~i~~~~~v~~i~g~---~-----~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 359 AEAR-ELGIEVLTGHVVAATEGG---K-----RVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHH-HcCCEEEcCCeEEEEecC---C-----cEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 3445 689999999999999743 2 567787763 3445679999 699999988888888776643
No 235
>PRK05868 hypothetical protein; Validated
Probab=96.96 E-value=0.00072 Score=74.22 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Confidence 799999999999999999998 99999999975
No 236
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.95 E-value=0.00096 Score=77.54 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=34.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.....+|+|||||++|+++|..|+++ |++|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 45579999999999999999999999 99999999964
No 237
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.90 E-value=0.00085 Score=76.96 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEec
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEa 149 (731)
...|||+|||||++|+++|.+|++. |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence 4579999999999999999999998 999999974
No 238
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.00095 Score=68.87 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+|||+|||+|.+|+++|++|+++ |+++.++-+|.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~-Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQA-GKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhc-CCcEEEEeCCh
Confidence 69999999999999999999999 99999999995
No 239
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.85 E-value=0.00095 Score=75.61 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhc-----CCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEI-----KKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~-----~G~~VlVLEaG~~~ 153 (731)
+|||||||.+|+++|++|+++ .|.+|+|||+.++.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL 42 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence 599999999999999999985 14799999998765
No 240
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.84 E-value=0.00091 Score=75.42 Aligned_cols=31 Identities=32% Similarity=0.604 Sum_probs=27.2
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+||+||||+|++|..+|.+ .+ |++|+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC
Confidence 6999999999999888654 46 9999999986
No 241
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.80 E-value=0.0012 Score=74.63 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
+|+|||+|.+|+++|++|+++ |++|+|||+.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 489999999999999999999 9999999998754
No 242
>PRK07846 mycothione reductase; Reviewed
Probab=96.80 E-value=0.0011 Score=74.67 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=27.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+||+||||+|++|..+|.+ .. |++|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~-G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA-DKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC-CCeEEEEeCCC
Confidence 4999999999999988876 35 99999999863
No 243
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.76 E-value=0.0013 Score=79.53 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
...+|+|||||++|+++|+.|++. |++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence 368999999999999999999999 999999999764
No 244
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.74 E-value=0.0015 Score=72.19 Aligned_cols=40 Identities=33% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~ 154 (731)
|+++|||||+|.|..-+++|..||++ |++||.||+.+++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYG 40 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSC
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcC
Confidence 56799999999999999999999999 99999999998774
No 245
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.74 E-value=0.0014 Score=72.25 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.||+|||||.+|+.+|..||+. |.+|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEeccc
Confidence 3799999999999999999999 99999999865
No 246
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.74 E-value=0.0025 Score=53.17 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=29.9
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++|||||+.|+-+|..|++. |.+|.|+|+.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccc
Confidence 79999999999999999998 99999999986
No 247
>KOG2614|consensus
Probab=96.73 E-value=0.0014 Score=70.08 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+-+|||||||.+|+++|..|++. |.+|+|+|+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeec
Confidence 35799999999999999999999 9999999985
No 248
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.73 E-value=0.018 Score=62.89 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhhcC-CCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIK-KWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~-G~~VlVLEaG~~~ 153 (731)
-+||||||++|+.+|.+|++++ +.+|+++|+-.+.
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 4899999999999999999973 5899999998765
No 249
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.71 E-value=0.0014 Score=72.64 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
=+|+|||||++|+++|..|+++ |++|+|+|+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 3699999999999999999998 99999999974
No 250
>PRK12831 putative oxidoreductase; Provisional
Probab=96.68 E-value=0.0021 Score=72.71 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...||+|||||++|+++|.+|++. |++|+|+|+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 467999999999999999999998 99999999864
No 251
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.61 E-value=0.035 Score=61.41 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=40.3
Q ss_pred hHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEE--EeccEEEecccCC
Q psy7389 316 IRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRA--RAKKEVISSAGAI 375 (731)
Q Consensus 316 a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i--~A~k~VVLAAGai 375 (731)
-++ ..|+++..+++|+.|.++..++ ..+++++.+..+|...+| ..+..|++..|.+
T Consensus 216 ~L~-~~GV~F~~~t~V~di~~~~~~~---~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLK-SQGVDFRFNTKVTDIDFDITGD---KKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHH-HCCCEEECCCEEEEEEEEccCC---CeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 344 6899999999999999975432 347788888776655544 4444677877764
No 252
>KOG4716|consensus
Probab=96.54 E-value=0.0024 Score=66.01 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..+||.||||+|.+|+++|.+.|.- |.+|.+|+.=
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeec
Confidence 3479999999999999999999998 9999999964
No 253
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.54 E-value=0.0022 Score=72.65 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|+||||+|++|+.+|..|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999999 99999999873
No 254
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.53 E-value=0.0022 Score=72.45 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
++||||+|++|.++|.+|++. |++|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 699999999999999999998 999999999753
No 255
>PLN02529 lysine-specific histone demethylase 1
Probab=96.53 E-value=0.0029 Score=74.55 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...||||||+|++|+++|..|+++ |++|+|||+....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccC
Confidence 468999999999999999999999 9999999997654
No 256
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.51 E-value=0.0027 Score=68.77 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
.=+++|||||.+|++||+.||+. |.+|.|+|+.+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 44799999999999999999999 9999999998744
No 257
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.48 E-value=0.0032 Score=70.91 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+||+|||+|++|+++|..|++. |++|+|+|+.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 368999999999999999999998 99999999875
No 258
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.48 E-value=0.0036 Score=70.98 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 467999999999999999999998 9999999998643
No 259
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.46 E-value=0.0028 Score=71.92 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=44.1
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCC-CCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHH
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKT-PNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~-g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
|.+.++ +.|.+|+.++.|++|+.++. ++ ..++++|.+..++....+.|+ .||+|+.+....+||
T Consensus 225 l~~~L~-~~Gg~i~~~~~V~~I~~~~~~~~---~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 225 ILEYIE-ARGGKFHLRHKVREIKYEKSSDG---STRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHH-HCCCEEECCCEEEEEEEecCCCC---ceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence 444555 67999999999999998642 11 003778877543212358898 599999987777765
No 260
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.46 E-value=0.0042 Score=73.67 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...+|||||||.+|+++|++|++. |++|+|||+....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccC
Confidence 368999999999999999999998 9999999997654
No 261
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.45 E-value=0.0028 Score=70.70 Aligned_cols=32 Identities=41% Similarity=0.487 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCC-CeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~ 151 (731)
.|+|||+|++|+++|..|+++ | .+|+|+||.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCC
Confidence 489999999999999999998 7 5999999975
No 262
>PLN02612 phytoene desaturase
Probab=96.45 E-value=0.0032 Score=72.97 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
..+|+|||+|.+|+++|++|+++ |++|+|+|+....
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~ 128 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVL 128 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence 57899999999999999999999 9999999997653
No 263
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.34 E-value=0.0034 Score=76.60 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
..+|+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~ 341 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDL 341 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCC
Confidence 57899999999999999999999 9999999997643
No 264
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.046 Score=57.08 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=47.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLS 384 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~S 384 (731)
-+|++|++++.-+.|.-+ |. +++|..|++ .+....+.-. .|.+--|-+.++.+|.-+
T Consensus 402 l~Nv~ii~na~Ttei~Gd--g~-----kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 402 LPNVTIITNAQTTEVKGD--GD-----KVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred CCCcEEEecceeeEEecC--Cc-----eecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 689999999999999865 34 899999986 5667777776 699999999999998755
No 265
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.32 E-value=0.0049 Score=73.65 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
....|+|||+|++|+++|+.|++. |++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 456899999999999999999998 99999999853
No 266
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.30 E-value=0.032 Score=61.86 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3699999999999999999998 99999999874
No 267
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.28 E-value=0.0039 Score=76.68 Aligned_cols=37 Identities=27% Similarity=0.160 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...+|+|||||++|+++|..|++. |++|+|+|+++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 357999999999999999999999 9999999998644
No 268
>KOG0405|consensus
Probab=96.26 E-value=0.0053 Score=63.89 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=32.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..+||+.|||+|.+|..+|.+.|+. |.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence 4489999999999999999999998 9999999987
No 269
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.25 E-value=0.033 Score=61.26 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 388 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~ 388 (731)
+.|+++++++.|++|..++ + .. .|.+. ++ .++.++ .||+|+|.-..+.++..+|+..
T Consensus 195 ~~gV~i~~~~~v~~i~~~~--~-----~~-~v~~~-~g--~~i~~D-~vI~a~G~~p~~~l~~~~gl~~ 251 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTD--S-----GI-RATLD-SG--RSIEVD-AVIAAAGLRPNTALARRAGLAV 251 (377)
T ss_pred hCCCEEEECCeEEEEEccC--C-----EE-EEEEc-CC--cEEECC-EEEECcCCCcchHHHHHCCCCc
Confidence 4689999999999998542 2 22 34433 33 268898 6999999877778888887753
No 270
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.23 E-value=0.0053 Score=72.60 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...+|+|||||++|+++|..|++. |++|+|+|+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 357999999999999999999998 99999999975
No 271
>PLN02487 zeta-carotene desaturase
Probab=96.22 E-value=0.0065 Score=69.97 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
..+|+|||+|.+|+++|..|+++ |++|+|+|+.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~ 110 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFI 110 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCC
Confidence 35899999999999999999999 9999999998754
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.21 E-value=0.0049 Score=69.68 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+|+|||||++|+.+|..|++. |++|+|+|+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~ 173 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARD 173 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence 57999999999999999999998 99999999975
No 273
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.20 E-value=0.0045 Score=74.81 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
..-+|+|||||++|+++|..|++. |++|+|+|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccc
Confidence 356899999999999999999999 999999998764
No 274
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.14 E-value=0.0063 Score=73.14 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...+|+|||||++|+++|..|++. |++|+|+|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 467999999999999999999999 99999999863
No 275
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.12 E-value=0.041 Score=62.40 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 699999999999999999998 99999999874
No 276
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.98 E-value=0.0097 Score=67.18 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=32.4
Q ss_pred cccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~~ 153 (731)
...|+|||||++|+.+|..|+++ .|++|.|+|+-+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 46799999999999999999972 39999999998754
No 277
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.92 E-value=0.063 Score=60.43 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|.+|+-+|..|++. |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCc
Confidence 3699999999999999999998 99999999874
No 278
>KOG0685|consensus
Probab=95.91 E-value=0.0096 Score=64.83 Aligned_cols=38 Identities=42% Similarity=0.410 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...-+||||+|++|++||.+|-+..+.+|+|||+..+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 35679999999999999999998746799999998876
No 279
>PLN03000 amine oxidase
Probab=95.88 E-value=0.0086 Score=71.17 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
...||||||+|++|+++|..|++. |++|+|||+..+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcC
Confidence 368999999999999999999998 9999999998765
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.84 E-value=0.044 Score=66.32 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=42.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
..|++|++++.|++|..+.. + ....|.+.+ +. .+.++ .||+|+|.-.+..|+..+|+.
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~-~-----~~~~v~~~d-G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGV-E-----ARKTMRFAD-GS--ELEVD-FIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HCCCEEEcCCeEEEEEecCC-C-----ceEEEEECC-CC--EEEcC-EEEECCCcccCchHHhhcCcc
Confidence 57899999999999975422 2 344555443 32 58899 799999988888887778764
No 281
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.83 E-value=0.0081 Score=72.22 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~ 152 (731)
+|+|||||++|+++|..|++. +|++|+|||+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 599999999999999999996 4899999999763
No 282
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.79 E-value=0.011 Score=69.70 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
..+|+|||+|++|+++|..|++. |++|+|+|+.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 47899999999999999999998 999999999764
No 283
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.76 E-value=0.058 Score=65.08 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=42.0
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
..|++|++++.|++|.-+ + ++.+|.+.++ . ++.++ .||+|+|.-.+..|+..+|+.
T Consensus 194 ~~GV~v~~~~~v~~i~~~---~-----~~~~v~~~dG-~--~i~~D-~Vi~a~G~~Pn~~la~~~gl~ 249 (785)
T TIGR02374 194 QKGLTFLLEKDTVEIVGA---T-----KADRIRFKDG-S--SLEAD-LIVMAAGIRPNDELAVSAGIK 249 (785)
T ss_pred HcCCEEEeCCceEEEEcC---C-----ceEEEEECCC-C--EEEcC-EEEECCCCCcCcHHHHhcCCc
Confidence 578999999999998743 2 4566766543 2 68899 799999987777777777764
No 284
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.74 E-value=0.075 Score=60.37 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|++|+-+|..|++. |.+|.|+|+++
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~ 213 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAAD 213 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 799999999999999999998 99999999884
No 285
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.74 E-value=0.095 Score=60.23 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=44.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhc
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLS 384 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~S 384 (731)
..|++++.++.|++|.-+ ++ ++++|.+.+ ++...++.++ .|++|.|...++.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~--~g-----~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD--GD-----KVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcC--CC-----cEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 368999999999999854 23 677888764 4555689999 699999988777776543
No 286
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.67 E-value=0.11 Score=59.69 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=42.0
Q ss_pred CCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhh
Q psy7389 321 KNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILML 383 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~ 383 (731)
.|++|+.++.|+++.-+ ++ ++++|.+.+ ++...++.++ .||+|.|...++.+|..
T Consensus 401 ~gV~i~~~~~v~~i~~~--~~-----~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGD--GD-----KVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCEEEECCeeEEEEcC--CC-----EEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 58999999999999744 23 677787764 3445679999 69999998777777643
No 287
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.66 E-value=0.014 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+|+|||+|++|+.+|..|++. |++|+|+|+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 51 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLP 51 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 45899999999999999999998 99999999975
No 288
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.64 E-value=0.13 Score=58.05 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.|+|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~ 304 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRR 304 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeec
Confidence 699999999999999999998 9999999986
No 289
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.62 E-value=0.013 Score=66.38 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
...+|+|||+|++|+++|..|++. |++|+|+|+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 357999999999999999999998 99999999975
No 290
>PLN02976 amine oxidase
Probab=95.61 E-value=0.013 Score=72.33 Aligned_cols=37 Identities=32% Similarity=0.406 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
..+||+|||+|++|+++|.+|+++ |++|+|||+....
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCC
Confidence 458999999999999999999998 9999999996544
No 291
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.56 E-value=0.09 Score=59.45 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 699999999999999999998 99999999874
No 292
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.54 E-value=0.017 Score=65.70 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+|+|||+|++|+.+|..|++. |++|+|+|+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 46999999999999999999998 99999999875
No 293
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.53 E-value=0.1 Score=59.07 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 599999999999999999998 99999999874
No 294
>PRK10262 thioredoxin reductase; Provisional
Probab=95.46 E-value=0.18 Score=54.03 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=41.3
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeC---CEEEEEEeccEEEecccCCCchHHHhhcCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYK---KKLRRARAKKEVISSAGAINSPKILMLSGI 386 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~---g~~~~i~A~k~VVLAAGai~Tp~LLl~SGi 386 (731)
..|+++++++.|++|.-++ . ++.+|++... +...++.++ .||+|+|......|+ ++++
T Consensus 197 ~~gV~i~~~~~v~~v~~~~--~-----~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 197 NGNIILHTNRTLEEVTGDQ--M-----GVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred CCCeEEEeCCEEEEEEcCC--c-----cEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence 5689999999999997442 2 4667776642 345679999 699999976666544 3444
No 295
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.43 E-value=0.1 Score=58.78 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|||+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 699999999999999999998 99999999884
No 296
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.42 E-value=0.1 Score=59.30 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 699999999999999999998 99999999874
No 297
>KOG3855|consensus
Probab=95.36 E-value=0.016 Score=61.86 Aligned_cols=37 Identities=41% Similarity=0.623 Sum_probs=32.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcC---CCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIK---KWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~---G~~VlVLEaG~ 151 (731)
...|||||||||+.|.+.|..|..+| -+||++||.+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 34899999999999999999998753 57999999995
No 298
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.32 E-value=0.019 Score=64.12 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
.-|+|||||++|+.+|.+|+.+.|++|.|+|+.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 459999999999999998764339999999998643
No 299
>KOG1276|consensus
Probab=95.27 E-value=0.021 Score=61.42 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIEEP 154 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~~~ 154 (731)
.-+|+|||+|.+|+++|++|++. +...|+|.|++++..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 57899999999999999999998 344567799998763
No 300
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.22 E-value=0.23 Score=52.27 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=40.4
Q ss_pred CCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe--CCEEEEEEeccEEEecccCCCchHHHhhc
Q psy7389 321 KNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY--KKKLRRARAKKEVISSAGAINSPKILMLS 384 (731)
Q Consensus 321 ~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~--~g~~~~i~A~k~VVLAAGai~Tp~LLl~S 384 (731)
.|+++++++.|+++..+ + ++.++++.. .+...++.++ .||+|+|....+.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~---~-----~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---N-----KVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc---C-----cEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 48999999999999743 2 455666653 3555789998 799999966666666554
No 301
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.96 E-value=0.21 Score=55.81 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.|+|||+|.+|+-+|..|++. |.+|.++++++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence 3699999999999999999998 99999999874
No 302
>PRK12831 putative oxidoreductase; Provisional
Probab=94.95 E-value=0.27 Score=55.59 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.|+|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~ 313 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRR 313 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeec
Confidence 699999999999999999998 9999999975
No 303
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.89 E-value=0.19 Score=57.23 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence 599999999999999999998 9999999964
No 304
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.88 E-value=0.034 Score=64.57 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
..-+|+|||+|++|+++|..|++. |++|+|+|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 356799999999999999999998 999999998754
No 305
>PRK14727 putative mercuric reductase; Provisional
Probab=94.88 E-value=0.27 Score=55.89 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 699999999999999999998 9999999974
No 306
>PRK13984 putative oxidoreductase; Provisional
Probab=94.84 E-value=0.033 Score=65.28 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
....+|+|||+|++|+++|..|++. |++|+|+|+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~ 316 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLS 316 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 3467899999999999999999999 99999999875
No 307
>PTZ00058 glutathione reductase; Provisional
Probab=94.74 E-value=0.15 Score=59.02 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
=.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~ 270 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGN 270 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecc
Confidence 3699999999999999999998 99999999874
No 308
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.37 E-value=0.043 Score=60.76 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=43.7
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
.++...++ +.|+++++++.|+++..+ + .+ .|... ++. ++.++ .||+|+|......|+..+|+.
T Consensus 190 ~~l~~~l~-~~GV~i~~~~~V~~i~~~---~-----~~-~v~l~-~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 190 RYLLQRHQ-QAGVRILLNNAIEHVVDG---E-----KV-ELTLQ-SGE--TLQAD-VVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHHHHHH-HCCCEEEeCCeeEEEEcC---C-----EE-EEEEC-CCC--EEECC-EEEECCCCChhhHHHHhcCCC
Confidence 34555555 679999999999998742 2 22 23332 332 58898 699999987777777777764
No 309
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.31 E-value=0.045 Score=61.53 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=42.3
Q ss_pred ccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 312 FIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 312 ~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
.+...++ +.|+++++++.|++|.- . . |.+.+ +. .+.++ .||+|+|....+.+|..+|+.
T Consensus 194 ~l~~~l~-~~gI~i~~~~~v~~i~~----~-----~---v~~~~-g~--~~~~D-~vl~a~G~~pn~~~l~~~gl~ 252 (438)
T PRK13512 194 PILDELD-KREIPYRLNEEIDAING----N-----E---VTFKS-GK--VEHYD-MIIEGVGTHPNSKFIESSNIK 252 (438)
T ss_pred HHHHHHH-hcCCEEEECCeEEEEeC----C-----E---EEECC-CC--EEEeC-EEEECcCCCcChHHHHhcCcc
Confidence 3455566 68999999999999851 1 2 33333 32 57898 699999988777788877763
No 310
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.31 E-value=0.054 Score=60.58 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
..+|||||+|++|+.+|.+|... +.+|+|+|+.++.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 56899999999999999999876 8999999987654
No 311
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.29 E-value=0.043 Score=61.78 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=44.8
Q ss_pred hccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCC
Q psy7389 311 AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIG 387 (731)
Q Consensus 311 ~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig 387 (731)
.++.+.++ ..|++|++++.|++|..+ + ++.++.. ++. ++.++ .||+|+|...+..+|..+|+.
T Consensus 195 ~~l~~~l~-~~gI~v~~~~~v~~i~~~---~-----~~~~v~~--~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 195 DVMEEELR-ENGVELHLNEFVKSLIGE---D-----KVEGVVT--DKG--EYEAD-VVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHHH-HCCCEEEcCCEEEEEecC---C-----cEEEEEe--CCC--EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence 34555555 689999999999999532 2 3444432 222 58898 699999987777788888774
No 312
>KOG4405|consensus
Probab=94.21 E-value=0.047 Score=58.14 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=36.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
++++|||||||.|..=++.|...++. |.+||=|++.+++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yY 43 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYY 43 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCcccc
Confidence 55689999999999999999999998 9999999998766
No 313
>PRK14694 putative mercuric reductase; Provisional
Probab=94.14 E-value=0.42 Score=54.19 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.++|||+|+.|+-+|..|++. |.+|.|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECC
Confidence 699999999999999999998 9999999864
No 314
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.08 E-value=0.34 Score=54.48 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 699999999999999999998 99999999874
No 315
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.86 E-value=0.052 Score=60.73 Aligned_cols=33 Identities=33% Similarity=0.400 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.|.|||||++|+.+|..|+++ |++|+|.|+-+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~ 156 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVA 156 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcC
Confidence 6799999999999999999999 99999999875
No 316
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.77 E-value=0.4 Score=52.15 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCe-EEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG 150 (731)
.++|||+|..|+-+|..|++. |.+ |.|+++.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeec
Confidence 599999999999999999988 886 9999975
No 317
>KOG1439|consensus
Probab=93.75 E-value=0.035 Score=59.23 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=36.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~ 154 (731)
|.++|||||+|.|..=|+.+..|+.+ |.+||.++|.+++.
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG 40 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence 45579999999999999999999999 99999999998773
No 318
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.061 Score=55.90 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|.+|+-+|+++|++ |.+|.+.|--+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp 36 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR-GVPVILYEMRP 36 (439)
T ss_pred ceEEEcccccccHHHHHHHHc-CCcEEEEEccc
Confidence 489999999999999999999 99999999764
No 319
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.93 E-value=0.8 Score=56.28 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.|||||+|.+|+-+|..+.+. |.+|.++.+.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr 479 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRL-GGNVTIVYRR 479 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCEEEEEEec
Confidence 599999999999999999998 9999999876
No 320
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.15 Score=53.93 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP 154 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~~ 154 (731)
.|||||+|.|..=|+.+..||-+ |.+||++++.+.+.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 69999999999999999999999 99999999998763
No 321
>KOG3851|consensus
Probab=92.60 E-value=0.11 Score=53.83 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 115 DMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 115 ~~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
..+|.|+|||||.+|+.+|.++.++ +.-+|.|||-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 3589999999999999999999997 445899999654
No 322
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.57 E-value=0.13 Score=56.53 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
.||||||+|++|+.+|.+|.+. +..+|+|+++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999884 467899999864
No 323
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.57 E-value=0.33 Score=52.46 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=29.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
......|+|||||-+++-++..|.+. +..+|.++=|++
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 34467899999999999999999998 225899999886
No 324
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.52 E-value=0.97 Score=51.08 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
=.|+|||+|..|+-+|..|++. |. +|.|+++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeec
Confidence 3699999999999999999998 87 89999975
No 325
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.50 E-value=1 Score=55.89 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
-.|+|||+|..|+-+|..|++. |. .|+|+|..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~ 350 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDAR 350 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccC
Confidence 3699999999999999999998 84 68999876
No 326
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.47 E-value=0.13 Score=56.11 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=29.6
Q ss_pred EEEECCChhHHHHHHHHhhc--CCCeEEEEecCCCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEI--KKWKVLLLEAGIEE 153 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~--~G~~VlVLEaG~~~ 153 (731)
|||||||++|+.+|.+|.++ ++.+|+|+|+....
T Consensus 2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 89999999999999999743 47899999988754
No 327
>KOG1800|consensus
Probab=92.37 E-value=0.15 Score=54.12 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhhc-CCCeEEEEecCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGIE 152 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~~ 152 (731)
..-|+|||||++|.-+|..|-++ ++.+|-|.|+-+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 34699999999999999999985 7899999999863
No 328
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.35 E-value=0.16 Score=47.75 Aligned_cols=31 Identities=35% Similarity=0.569 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++|||+|..|+..|.+|+++ |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 58999999999999999998 99999999985
No 329
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.26 E-value=0.96 Score=51.32 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=41.5
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe-----------CCEEEEEEeccEEEecccCCCc-hHHHhhcCC
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY-----------KKKLRRARAKKEVISSAGAINS-PKILMLSGI 386 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~-----------~g~~~~i~A~k~VVLAAGai~T-p~LLl~SGi 386 (731)
..|+++++++.+++|.-+ ++ ++++|++.. .+...++.++ .||+|.|.... ..|+...|+
T Consensus 341 ~~GV~i~~~~~~~~i~~~--~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGE--NG-----KVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HcCCeEEeccCceEEEcc--CC-----EEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 468999999999999743 24 788887642 2445789999 69999995443 346555554
No 330
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.12 E-value=1.4 Score=50.03 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..+.+. |. +|.|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecC
Confidence 3699999999999999999998 85 799999863
No 331
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.09 E-value=0.43 Score=52.07 Aligned_cols=88 Identities=8% Similarity=-0.127 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCCCCC-CCCCCCCccccCCChhhhccHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEe
Q psy7389 277 PVLIKAWKEKGYPERDL-NAENQVGGFICGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFY 355 (731)
Q Consensus 277 ~~~~~~~~~~G~~~~~~-~~~~~~G~~r~~~s~~~~~L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~ 355 (731)
..+.+.+++.|++...- ++.-..-..+. ++....|...++ +.|++|++++.|+.| ++ + . .++.+..
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~grvfP~S~~A--~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~--~-----~-~~v~~~~ 123 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSSGRVFPVEMKA--APLLRAWLKRLA-EQGVQFHTRHRWIGW--QG--G-----T-LRFETPD 123 (376)
T ss_pred HHHHHHHHHCCCceEECCCCEECCCCCCH--HHHHHHHHHHHH-HCCCEEEeCCEEEEE--eC--C-----c-EEEEECC
Confidence 55677788899876321 22111111222 444555666666 799999999999999 21 2 2 2444322
Q ss_pred CCEEEEEEeccEEEecccCCCchHH
Q psy7389 356 KKKLRRARAKKEVISSAGAINSPKI 380 (731)
Q Consensus 356 ~g~~~~i~A~k~VVLAAGai~Tp~L 380 (731)
+ ...++|+ .||||+|+...|++
T Consensus 124 ~--~~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 124 G--QSTIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred C--ceEEecC-EEEEcCCCcccccc
Confidence 2 2358998 59999999888875
No 332
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.02 E-value=0.16 Score=55.97 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.-++||||+|..|+-+|..|++. |++|+|+|+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~ 169 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAAD 169 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccc
Confidence 36899999999999999999999 99999999986
No 333
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.01 E-value=0.16 Score=48.29 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.3
Q ss_pred EEECCChhHHHHHHHHhhcC----CCeEEEEecCC
Q psy7389 121 IIIGAGSAGCVLANRLSEIK----KWKVLLLEAGI 151 (731)
Q Consensus 121 IIVGsG~aG~~aA~~LA~~~----G~~VlVLEaG~ 151 (731)
+|||+|++|++++.+|.+.. ..+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999872 57999999954
No 334
>KOG0399|consensus
Probab=91.75 E-value=0.18 Score=60.10 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
-.-|.|||||++|+.+|.+|-++ |+.|+|.||..+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRV 1820 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCc
Confidence 46799999999999999999999 9999999998754
No 335
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.67 E-value=0.2 Score=49.13 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=25.7
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||.|..|+++|..||++ |++|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 78999999999999999999 99999999864
No 336
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.44 E-value=1.4 Score=53.13 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCe-EEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG 150 (731)
.|||||+|.+|+-+|..|.+. |.+ |.|+++.
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~ 603 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRR 603 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeec
Confidence 699999999999999999998 886 9999976
No 337
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.38 E-value=1.6 Score=51.66 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
.|||||+|..|+-+|..+.+. |. +|.++++.
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~ 501 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRH-GASNVTCAYRR 501 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCCeEEEeEec
Confidence 699999999999999998888 86 69998876
No 338
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.33 E-value=0.22 Score=47.35 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|.++|..|+++ |++|.+..+-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 78999999999999999999 99999999864
No 339
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.06 E-value=0.27 Score=47.93 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..+|.+ |++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 78999999999999999999 99999999863
No 340
>KOG1346|consensus
Probab=90.89 E-value=0.75 Score=49.41 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=44.7
Q ss_pred hHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhhcCCCCcccc
Q psy7389 316 IRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHL 392 (731)
Q Consensus 316 a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~SGig~~~~l 392 (731)
... +.|+.|+.++.|+.+..... + + -++.. +| .+++.+ .||+|.|--.+..|...||+.-.+.|
T Consensus 402 kir-~~GV~V~pna~v~sv~~~~~-n------l-~lkL~-dG--~~l~tD-~vVvavG~ePN~ela~~sgLeiD~~l 465 (659)
T KOG1346|consen 402 KIR-KGGVDVRPNAKVESVRKCCK-N------L-VLKLS-DG--SELRTD-LVVVAVGEEPNSELAEASGLEIDEKL 465 (659)
T ss_pred HHH-hcCceeccchhhhhhhhhcc-c------e-EEEec-CC--Ceeeee-eEEEEecCCCchhhcccccceeeccc
Confidence 344 68999999999999986531 1 1 12222 33 367888 79999998778888888887554443
No 341
>KOG1336|consensus
Probab=90.55 E-value=1.6 Score=48.18 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=43.4
Q ss_pred CCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHHhh
Q psy7389 320 RKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILML 383 (731)
Q Consensus 320 ~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LLl~ 383 (731)
..|++++.++.+..+..++.| +++-|...++ .++.|+ .||+..|+--...++..
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~G------ev~~V~l~dg---~~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSDG------EVSEVKLKDG---KTLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred hcCeEEEEecceeecccCCCC------cEEEEEeccC---CEeccC-eEEEeeccccccccccc
Confidence 578999999999999987653 6777776665 378999 79999998877777665
No 342
>KOG0404|consensus
Probab=90.23 E-value=0.26 Score=48.54 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.-.|+|||||+++-++|.++|++ -+|-+|.|-.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara-elkPllfEG~ 40 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGM 40 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc-ccCceEEeee
Confidence 34699999999999999999999 9999999954
No 343
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.00 E-value=2.2 Score=50.54 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
=.|||||+|..|+-+|..|++. |. +|.|+++..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~-Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRL-GAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 3699999999999999999998 76 699999763
No 344
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.58 E-value=0.38 Score=48.74 Aligned_cols=32 Identities=41% Similarity=0.571 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+||||+|-.|..+|..|++. |+.|+++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence 489999999999999999999 99999999875
No 345
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.36 E-value=0.39 Score=51.12 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|+.|+..|.+|+++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 499999999999999999999 99999999974
No 346
>KOG2755|consensus
Probab=89.30 E-value=0.29 Score=49.47 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
+||||||.+|.++|..||.. |..+||+|-+.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 79999999999999999995 788999999875
No 347
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.28 E-value=0.44 Score=46.97 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.|+|||+|.++.-+|..|++. |.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 5799999999999999999999 99999998875
No 348
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=0.39 Score=53.07 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHhhcC--CCeEEEEecCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIK--KWKVLLLEAGIE 152 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~--G~~VlVLEaG~~ 152 (731)
++|+|||+|++|..+|.+|.+.+ -.+|.|+|.-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 68999999999999999999952 223999998753
No 349
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.19 E-value=0.45 Score=53.45 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 190 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAAS 190 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 599999999999999999998 99999999985
No 350
>KOG2403|consensus
Probab=88.77 E-value=0.44 Score=53.08 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=31.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..||.+|||+|.+|+-+|..|++. |.+|.++-+-
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl 87 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKL 87 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhc-CceEEEEecc
Confidence 359999999999999999999999 9999998764
No 351
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.59 E-value=0.34 Score=53.10 Aligned_cols=37 Identities=35% Similarity=0.616 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHhhc-C-----------CCeEEEEecCCCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI-K-----------KWKVLLLEAGIEE 153 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~-~-----------G~~VlVLEaG~~~ 153 (731)
.-+++|||||++|.-+|.+|++. + ..+|.|+|+++..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 45799999999999999999883 1 1399999999743
No 352
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=88.57 E-value=0.5 Score=53.45 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-+++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3799999999999999999998 99999999985
No 353
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.45 E-value=0.54 Score=50.24 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+.|||+|..|+..|..|+++ |++|.++-|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 499999999999999999999 99999999874
No 354
>PRK07846 mycothione reductase; Reviewed
Probab=88.36 E-value=0.56 Score=52.92 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 3799999999999999999998 99999999985
No 355
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.22 E-value=0.54 Score=53.36 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|+.|+-+|..|++. |.+|.|||+++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~ 207 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFD 207 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCC
Confidence 699999999999999999998 99999999985
No 356
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=88.16 E-value=0.67 Score=51.95 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
-++|||||+.|+-.|.-+++- |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 399999999999999999998 9999999999744
No 357
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.13 E-value=0.56 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3699999999999999999998 99999999985
No 358
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.89 E-value=0.55 Score=50.08 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|.|||+|..|+..|..|+++ |++|+++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 489999999999999999999 99999999874
No 359
>PRK06370 mercuric reductase; Validated
Probab=87.40 E-value=0.68 Score=52.42 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 3699999999999999999998 99999999985
No 360
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.90 E-value=0.75 Score=52.04 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 699999999999999999998 99999999985
No 361
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.85 E-value=0.73 Score=52.42 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|+|||+|.+|+.+|..|++. |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 599999999999999999998 99999999764
No 362
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.71 E-value=0.7 Score=49.01 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=28.5
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+.|||+|..|+..|..|+++ |.+|.++.++
T Consensus 3 I~IiG~G~iG~~~a~~L~~~-g~~V~~~~r~ 32 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEA-GRDVTFLVRP 32 (305)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCceEEEecH
Confidence 78999999999999999999 9999999983
No 363
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=86.68 E-value=0.79 Score=51.84 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3699999999999999999998 99999999985
No 364
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.51 E-value=0.78 Score=48.57 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=28.5
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
++|||+|..|+..|..|+++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 79999999999999999998 9999999984
No 365
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.28 E-value=0.76 Score=51.61 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 181 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSD 181 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccc
Confidence 699999999999999999998 99999999985
No 366
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=86.12 E-value=0.75 Score=55.66 Aligned_cols=34 Identities=12% Similarity=0.366 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhc--CCCeEEEEecCCCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEI--KKWKVLLLEAGIEE 153 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~--~G~~VlVLEaG~~~ 153 (731)
+||||+|++|+.+|.+|.+. .+.+|+|+|+.++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998774 36799999998764
No 367
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.92 E-value=0.9 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..++.+ |++|++.|..+
T Consensus 10 VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 89999999999999999999 99999999764
No 368
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=85.87 E-value=1.2 Score=50.76 Aligned_cols=35 Identities=40% Similarity=0.521 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
|||||||||.+|+++|..||++ |++|+||||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCC
Confidence 7999999999999999999999 9999999998654
No 369
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.87 E-value=0.89 Score=51.29 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|+.|+-+|..|++. |.+|.|+|+++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccC
Confidence 3699999999999999999998 99999999875
No 370
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.77 E-value=0.92 Score=47.79 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|...|..||++ |.+|.++++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 389999999999999999998 99999999763
No 371
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.64 E-value=0.93 Score=47.74 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|...|..||.+ |++|+++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 489999999999999999999 99999999874
No 372
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=85.58 E-value=0.96 Score=54.97 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhc---CCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEI---KKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~---~G~~VlVLEaG~~~ 153 (731)
.+||||+|++|+.+|.+|.+. .+.+|+|+++.++.
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 699999999999999999763 36899999998764
No 373
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=85.46 E-value=0.97 Score=51.07 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGD 202 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 699999999999999999998 99999999985
No 374
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=85.38 E-value=1 Score=50.80 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence 599999999999999999998 99999999985
No 375
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.36 E-value=0.92 Score=47.82 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..|+++ |++|+++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 89999999999999999999 99999999864
No 376
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=85.21 E-value=0.78 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=24.0
Q ss_pred hhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 127 SAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 127 ~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
.+|+++|++|+++ |.+|+|||+.+..
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSS
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCC
Confidence 4899999999999 9999999998765
No 377
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.07 E-value=0.95 Score=51.16 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||.|.+|+++|..|++. |++|++.|+..
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~ 33 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRND 33 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 79999999999999999998 99999999874
No 378
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=84.87 E-value=1.1 Score=52.89 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~ 345 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSP 345 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccC
Confidence 699999999999999999998 99999999985
No 379
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.64 E-value=1.4 Score=39.11 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|||||.|..|..+|..|.+. +.+|+++|..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 79999999999999999997 88999999874
No 380
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=84.43 E-value=1.8 Score=49.13 Aligned_cols=34 Identities=29% Similarity=0.275 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
+|+|||+|.+|+++|.+|+++ |++|+|+|+.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCC
Confidence 489999999999999999998 9999999998654
No 381
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=84.28 E-value=1.1 Score=48.49 Aligned_cols=31 Identities=35% Similarity=0.593 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.|||+|..|+..|..|+++ |++|.++++..
T Consensus 5 I~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 5 ICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 89999999999999999999 99999999863
No 382
>PRK04148 hypothetical protein; Provisional
Probab=84.12 E-value=1.1 Score=41.26 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-+++||.| .|..+|..|++. |.+|+.+|..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence 49999999 888889999998 99999999875
No 383
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=84.10 E-value=9 Score=47.71 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCe-EEEEecC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG 150 (731)
=.|+|||+|.+|+-+|..+.+. |.+ |.++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rl-Ga~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRL-GAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeec
Confidence 3699999999999998888887 774 6677654
No 384
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.10 E-value=1.1 Score=48.22 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.|||+|+.|++.|.-||+. |+.|+.+|.-+
T Consensus 3 I~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred eEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 78999999999999999999 99999999764
No 385
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=84.03 E-value=1.3 Score=50.21 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 210 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRD 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 699999999999999999998 99999999985
No 386
>PRK06116 glutathione reductase; Validated
Probab=83.85 E-value=1.3 Score=49.89 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3699999999999999999998 99999999985
No 387
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.81 E-value=1.2 Score=51.81 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
=.|+|||+|..|+-+|..|++. |.+|.++++++
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCC
Confidence 3699999999999999999998 99999999985
No 388
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.71 E-value=0.98 Score=39.56 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.--|+|||+|..|..-+..|.+. |.+|.|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 34699999999999999999999 9999999865
No 389
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.69 E-value=1.3 Score=46.80 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|...|..|+++ |++|++.++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 389999999999999999999 99999999763
No 390
>PLN02507 glutathione reductase
Probab=83.62 E-value=1.3 Score=50.61 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 699999999999999999998 99999999875
No 391
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.46 E-value=1.4 Score=43.73 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
--++|||+|-.|...|..|.++ |.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 3599999999999999999998 9999999753
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.42 E-value=1.3 Score=46.67 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..|+.+ |.+|+++|+.+
T Consensus 6 I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 89999999999999999998 99999999863
No 393
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=83.38 E-value=1.4 Score=43.64 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
..-|+|||+|..|+.+|..||+. |. +|.++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 46799999999999999999999 98 69999976
No 394
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=83.31 E-value=1.9 Score=49.27 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
-||||||||.+|+++|..||++ |++|+||||....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 5899999999999999999999 9999999998655
No 395
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=83.22 E-value=1.6 Score=41.59 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=27.6
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEe
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLE 148 (731)
--|+|||+|-.|.--|..|.+. |.+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 3499999999999999999998 99999994
No 396
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.20 E-value=1.3 Score=49.94 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.|+|||+|..|+.+|..|++. |++|.+.|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3489999999999999999999 99999999863
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.09 E-value=1.6 Score=40.26 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCe-EEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG 150 (731)
.--++|||+|.+|..++..|++. |.+ |.|+-|-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 45699999999999999999998 876 9999875
No 398
>PLN02546 glutathione reductase
Probab=82.81 E-value=1.4 Score=51.01 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~ 285 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQK 285 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecc
Confidence 799999999999999999998 99999999885
No 399
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=82.74 E-value=1.9 Score=39.76 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
.-|+|||+|..|+.+|..|++. |. ++.|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence 3489999999999999999999 88 799999764
No 400
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.94 E-value=1.5 Score=45.96 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|.|||+|..|+..|..|+++ |++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 389999999999999999999 99999999753
No 401
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.89 E-value=1.8 Score=46.81 Aligned_cols=38 Identities=34% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 114 ~~~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|...+|+|.||-|+.-++.|..|.+..+.+++.|||-+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 44579999999999999999999998568999999986
No 402
>PRK13748 putative mercuric reductase; Provisional
Probab=81.85 E-value=1.5 Score=50.85 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecC
Confidence 699999999999999999998 9999999985
No 403
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.68 E-value=1.8 Score=46.80 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
..-|+|||+|..|+.+|..||++ |. ++.++|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 56799999999999999999999 98 899999864
No 404
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.62 E-value=1.7 Score=46.73 Aligned_cols=30 Identities=40% Similarity=0.423 Sum_probs=28.5
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+.|||+|..|...|..|+++ |.+|.++.|.
T Consensus 3 I~IiGaGa~G~ala~~L~~~-g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSK-KISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 78999999999999999999 9999999985
No 405
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.57 E-value=1.7 Score=47.42 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCC-CeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~ 151 (731)
+++|||+|..|.++|..||+. | .+|+|.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCCH
Confidence 589999999999999999998 7 8999999874
No 406
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.53 E-value=1.8 Score=43.07 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
-|+|||+|..|...|..|.+. |.+|+|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 599999999999999999998 9999999753
No 407
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=81.38 E-value=2.9 Score=47.02 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE 152 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~ 152 (731)
=.|+|||+|.+|.-+|..|++. |.+|.++=|.+.
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~ 209 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPP 209 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence 3799999999999999999999 999999999863
No 408
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.29 E-value=1.8 Score=46.77 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
..-|+|||.|..|+.+|..||++ |. ++.|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 45699999999999999999999 97 899999864
No 409
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.25 E-value=1.9 Score=44.82 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCC-CeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~ 151 (731)
..-|+|||.|..|+.+|..||+. | .++.|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 46799999999999999999999 8 6899999653
No 410
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=81.14 E-value=2.6 Score=48.23 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=31.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCCCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~~~ 153 (731)
|||||||.+|+++|..||++ |++|+||||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCC
Confidence 69999999999999999999 9999999998765
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=80.55 E-value=2.1 Score=42.43 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
-++|+|.|-.|..+|.+|.+. |.+|++.++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 499999999999999999998 9999999875
No 412
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=80.30 E-value=1.9 Score=48.06 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.|||.|..|+.+|..|+++ |++|+++++.+
T Consensus 6 I~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred EEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 89999999999999999999 99999999764
No 413
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.06 E-value=2.4 Score=39.43 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
|+|||.|..|+.+|..|++. |. ++.+++...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 79999999999999999998 87 799999764
No 414
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.90 E-value=1.9 Score=45.94 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.|+|+|+.|+..|++|+++ |..|+++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence 78999999999999999999 89999998875
No 415
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.80 E-value=2.4 Score=45.56 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-+.|||+|..|...|..|+++ |++|.++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 489999999999999999999 99999999853
No 416
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=79.74 E-value=2.1 Score=47.80 Aligned_cols=33 Identities=36% Similarity=0.734 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhhc-------------CCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEI-------------KKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~-------------~G~~VlVLEaG~ 151 (731)
.++|||+|.+|+-+|..|++. ++.+|.|+|+++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 699999999999999999861 278999999985
No 417
>PTZ00052 thioredoxin reductase; Provisional
Probab=79.51 E-value=2 Score=49.21 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 699999999999999999998 9999999974
No 418
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.48 E-value=2.2 Score=45.04 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..|+.+ |.+|.+.|+.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 89999999999999999998 99999999763
No 419
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.46 E-value=2 Score=47.77 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||.|..|+.+|..|+++ |++|+++++..
T Consensus 3 I~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 78999999999999999998 99999999864
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=79.46 E-value=2.3 Score=45.30 Aligned_cols=30 Identities=37% Similarity=0.531 Sum_probs=27.7
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
|.|||+|..|+.+|..||.. |+ +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 88999999999999999998 76 89999983
No 421
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=79.12 E-value=3 Score=46.94 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=39.0
Q ss_pred cHhhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCC--EEEEEEeccEEEecccC
Q psy7389 313 IRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKK--KLRRARAKKEVISSAGA 374 (731)
Q Consensus 313 L~~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g--~~~~i~A~k~VVLAAGa 374 (731)
|...++ ..|.+|++++.|++|..+++ + +++||++.+++ ...++.|+ .||+|+..
T Consensus 219 l~~~l~-~~g~~i~l~~~V~~I~~~~~-~-----~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYIT-SRGGEVRLNSRLKEIVLNED-G-----SVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HHHHHH-hcCCEEeCCCeeEEEEECCC-C-----CEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 444454 56899999999999987543 3 68888876532 22368898 59999875
No 422
>KOG3923|consensus
Probab=78.66 E-value=2 Score=44.49 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=26.5
Q ss_pred cccEEEECCChhHHHHHHHHhhc------CCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEI------KKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~------~G~~VlVLEaG 150 (731)
.-+++|||+|..|+++|..+.+. |-.+|.|++--
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 45799999999999999776662 44678887743
No 423
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=78.59 E-value=2.9 Score=40.27 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=29.6
Q ss_pred cccEEEECCCh-hHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGS-AGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~-aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
...++|||+|- +|..+|..|.+. |.+|.|+.|-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 57799999996 699999999998 9999999985
No 424
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.58 E-value=2.7 Score=40.70 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
|+|||.|..|+.+|..|++. |. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 79999999999999999998 88 599999763
No 425
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=78.52 E-value=2.3 Score=48.41 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=27.6
Q ss_pred cEEEECCChhHHHHHHHHh---hcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLS---EIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA---~~~G~~VlVLEaG~ 151 (731)
.++|||+|..|+-+|..++ +. |.+|.|+|+++
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~ 223 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNN 223 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCC
Confidence 6999999999999997554 45 89999999986
No 426
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.47 E-value=2.5 Score=45.20 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|.|||+|..|+..|..|+++ |++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 389999999999999999998 99999999864
No 427
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.61 E-value=3.1 Score=44.36 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|.|||+|..|+..|..|+++ |++|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 389999999999999999998 99999999753
No 428
>PLN02487 zeta-carotene desaturase
Probab=77.37 E-value=3.5 Score=47.82 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=43.1
Q ss_pred hhHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCCCchHHH
Q psy7389 315 PIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKIL 381 (731)
Q Consensus 315 ~a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai~Tp~LL 381 (731)
+.++ +.|.+|++++.|++|+.+.+++ +..+++||.+..++....+.|+ .||+|++.....+||
T Consensus 303 ~~L~-~~Gg~V~l~~~V~~I~~~~~~~--g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYIT-DRGGRFHLRWGCREILYDKSPD--GETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHH-HcCCEEEeCCceEEEEEecCCC--CceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 3445 6899999999999999974211 1125889887533333458898 699999965555544
No 429
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.03 E-value=2.9 Score=45.83 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
..+|+|||+|..|..+|..|... |.+|.++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 46699999999999999999998 9999999975
No 430
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=76.81 E-value=2.8 Score=47.37 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHHHhhc-CCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEI-KKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~-~G~~VlVLEaG~ 151 (731)
+.|||.|..|+++|..||++ +|++|+.+|...
T Consensus 4 I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 89999999999999999997 258899999764
No 431
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=76.60 E-value=3.3 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
+.-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 56799999999999999999999 87 899999764
No 432
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=76.58 E-value=3.6 Score=39.52 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.-|+|+|+|..|..||.-|..- |.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 5699999999999999999998 99999999753
No 433
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=76.35 E-value=2.9 Score=47.72 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=29.5
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..|+++ |++|+|.|+.+
T Consensus 8 V~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 89999999999999999999 99999999874
No 434
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=76.09 E-value=3.4 Score=41.56 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=28.2
Q ss_pred EEEEC-CChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIG-AGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVG-sG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+.||| +|..|.++|..|+++ |++|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 78997 799999999999998 99999998764
No 435
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=75.94 E-value=3.3 Score=43.58 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
-.|+|||+|.+|.++|..|++. |. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 4599999999999999999998 86 799998863
No 436
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=75.93 E-value=3.4 Score=42.28 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=29.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhcC----------CCeEEEEecC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIK----------KWKVLLLEAG 150 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~----------G~~VlVLEaG 150 (731)
....|+|||+|..|+.+|..||+.. |.++.|+|..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 4678999999999999999999861 2388888865
No 437
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.55 E-value=3.5 Score=43.97 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCC--CeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G--~~VlVLEaG~ 151 (731)
.+.|||+|..|+++|..|+.. | ..|+++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 389999999999999999998 8 5899999864
No 438
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.83 E-value=3.4 Score=43.56 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCe-EEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWK-VLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~-VlVLEaG~ 151 (731)
-++|+|+|-+|.++|..|++. |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 489999999999999999998 986 99998853
No 439
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.76 E-value=3.3 Score=46.59 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
++|+|+|.+|.++|..|++. |.+|++.|+..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 89999999999999999999 99999999763
No 440
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.74 E-value=3.7 Score=45.41 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-.|+|+|.|..|..+|..|... |.+|+|+|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 4699999999999999999888 99999999764
No 441
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=74.62 E-value=3.2 Score=43.85 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=28.5
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
|.|||+|..|.-.|..+|.. |++|++.|..
T Consensus 6 v~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~ 35 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALA-GYDVVLKDIS 35 (307)
T ss_pred EEEEcccchhHHHHHHHhhc-CCceEEEeCC
Confidence 88999999999999999997 9999999976
No 442
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.42 E-value=3.2 Score=49.59 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|.-.|..+|.+ |++|+++|.-+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred EEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 89999999999999999999 99999999764
No 443
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=74.22 E-value=3.6 Score=47.08 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||+|..|...|..|+.+ |+.|.|.|+.+
T Consensus 10 V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQA-GHTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 89999999999999999999 99999999874
No 444
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=74.16 E-value=3.5 Score=47.04 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|...|..|+.+ |++|+|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 389999999999999999999 99999999864
No 445
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.14 E-value=4.2 Score=43.28 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.+.|||+|..|..+|..|+++ |++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 489999999999999999999 99999999853
No 446
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=74.13 E-value=3.3 Score=49.43 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|.-.|..+|.+ |+.|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 499999999999999999999 99999999764
No 447
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=73.91 E-value=3.7 Score=41.61 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC---eEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW---KVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~---~VlVLEaG~ 151 (731)
--++|+|+|.+|..+|..|++. |. +|.|++|-+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 3599999999999999999998 87 499999864
No 448
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=73.53 E-value=4.7 Score=41.26 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
...|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence 56799999999999999999998 75 788888764
No 449
>PRK08017 oxidoreductase; Provisional
Probab=73.29 E-value=4.3 Score=41.40 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=28.1
Q ss_pred EEEECC-ChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
++|+|+ |..|..+|..|+++ |.+|+++.+.
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~ 35 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRK 35 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCC
Confidence 899998 99999999999998 9999999875
No 450
>PRK08328 hypothetical protein; Provisional
Probab=73.22 E-value=4.4 Score=41.23 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
..-|+|||.|..|+.+|..||.. |. ++.++|..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 45699999999999999999999 86 68888765
No 451
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.22 E-value=3.3 Score=43.23 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
..+|+|||+|..|.-+|.-+.-- |.+|.+||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 46899999999999999998887 99999999873
No 452
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=72.99 E-value=3.9 Score=42.87 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||.|..|.+.|..|+++ |.+|+++++.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 78999999999999999998 99999999753
No 453
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=72.92 E-value=8.2 Score=41.30 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=36.7
Q ss_pred hHhcCCCeEEEcCcEEEEEEecCCCCCCCceEEEEEEEEeCCEEEEEEeccEEEecccCC
Q psy7389 316 IRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAI 375 (731)
Q Consensus 316 a~~~~~g~~i~~~t~V~~I~~~~~g~~~~~~r~~GV~~~~~g~~~~i~A~k~VVLAAGai 375 (731)
.++ .+++++-.+++|+.|.++...+ ++.++.+.+..++....+..+..|++.-|.+
T Consensus 236 yL~-~H~Vdf~~~~~Vedi~v~~t~g---kkvA~aih~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 236 YLK-SHGVDFTYDQKVEDIDVDDTPG---KKVAKAIHVLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHH-HcCCceEeccEEeeeeeccCcc---hhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence 345 7899999999999999986443 2223333323344455566665788888765
No 454
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.55 E-value=3 Score=44.02 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
--||.|||+|.+|.-+|.-||-- =..|.|||=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~ 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecch
Confidence 45899999999999999999975 55899999765
No 455
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=72.34 E-value=4.6 Score=42.97 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHhhcCC--CeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKK--WKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G--~~VlVLEaG~ 151 (731)
|+|||+|..|.++|..|+.. | ..|+++++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence 79999999999999999998 8 4899999864
No 456
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.98 E-value=4.6 Score=42.51 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
--++|||.|..|..+|..|... |.+|.|.+|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4599999999999999999998 99999999864
No 457
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.82 E-value=4.9 Score=40.25 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
..-|+|||.|..|+.+|..|++. |. ++.++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 46799999999999999999998 87 599999763
No 458
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=71.78 E-value=5 Score=41.19 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
...|+|||.|..|+.+|..||.. |. ++.|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 57799999999999999999998 86 799998763
No 459
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=71.70 E-value=5 Score=41.90 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.9
Q ss_pred EEEEC-CChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIG-AGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVG-sG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
|+|.| +|+.|+-++..|.++ |++|+|+|-=
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL 33 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNL 33 (329)
T ss_pred EEEecCcchhHHHHHHHHHHC-CCeEEEEecC
Confidence 45555 599999999999999 9999999953
No 460
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.61 E-value=5 Score=40.70 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
..-|+|||.|..|+.+|..|+.. |. ++.|+|..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 46699999999999999999998 87 78888865
No 461
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=71.09 E-value=4.4 Score=42.99 Aligned_cols=31 Identities=39% Similarity=0.497 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
|.|||+|..|..+|..|+.. |+ .|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 57999999999999999987 76 999999874
No 462
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=70.70 E-value=4.4 Score=45.83 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|+|||+|..|+=+|..|++. +.+|.++.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 699999999999999999998 99999999874
No 463
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=70.69 E-value=5.1 Score=38.07 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
--++|+|-|..|..+|.+|... |.+|.|.|..|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 3599999999999999999998 99999999875
No 464
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.53 E-value=5.5 Score=41.86 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
|+|||+|.-|+.+|..|+.. |. ++.++|.+.
T Consensus 2 VLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D~ 33 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGW-GVRHITFVDSGK 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCE
Confidence 79999999999999999999 87 789999774
No 465
>PRK08223 hypothetical protein; Validated
Probab=70.38 E-value=5.4 Score=41.75 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
..-|+|||.|..|+.+|..||.+ |. ++.++|...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 56799999999999999999999 87 788888653
No 466
>KOG2495|consensus
Probab=70.19 E-value=2.5 Score=45.98 Aligned_cols=34 Identities=35% Similarity=0.668 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHhhc-------------CCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEI-------------KKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~-------------~G~~VlVLEaG~ 151 (731)
--+||||||++|.-.|.+|+.- .-.+|+++||.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 4689999999999999999761 135999999986
No 467
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=69.90 E-value=4.5 Score=48.47 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|.-.|..+|.+ |++|+++|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence 399999999999999999999 99999999764
No 468
>PRK06223 malate dehydrogenase; Reviewed
Probab=69.87 E-value=5.6 Score=42.25 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
-|.|||+|..|..+|..|+.. |. .|+++|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 489999999999999999997 65 999999843
No 469
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.79 E-value=5.1 Score=46.12 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
-++|+|+|.+|.++|..|++. |.+|+++.|-
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 489999999999999999999 9999999874
No 470
>KOG2304|consensus
Probab=69.64 E-value=4.5 Score=40.24 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 116 ~~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
+---|.|||+|..|+-.|.-.|.. |+.|.++++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS-GLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc-CCceEEecCCH
Confidence 345699999999999999999998 99999999874
No 471
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=69.61 E-value=5.9 Score=40.30 Aligned_cols=30 Identities=23% Similarity=0.676 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
|+|||+|..|+.++..|+.. |. ++.|+|..
T Consensus 2 VlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALM-GFGQIHVIDMD 32 (234)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 79999999999999999998 76 78888865
No 472
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=69.32 E-value=7.7 Score=33.01 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=27.7
Q ss_pred EEEECCChhHHHHHHHHhhcCC---CeEEEE-ecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKK---WKVLLL-EAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G---~~VlVL-EaG~ 151 (731)
+.|||+|-.|...|..|.++ | .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 57899999999999999998 9 899966 8764
No 473
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=69.28 E-value=8.3 Score=32.35 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=28.0
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEec
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEa 149 (731)
-.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45999999999999999999973578999888
No 474
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.24 E-value=6.4 Score=38.97 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
+.-|+|||.|..|+.+|..|+.. |. ++.++|-.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 46799999999999999999998 87 58899865
No 475
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=69.20 E-value=6.7 Score=37.40 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=27.3
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|-|||-|..|...|.+|+++ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 378999999999999999998 99999999763
No 476
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=69.07 E-value=6.4 Score=38.67 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.6
Q ss_pred ccEEEECC-ChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 118 FDFIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 118 ~DvIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
-.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 45999996 99999999999998 9999999775
No 477
>PRK06057 short chain dehydrogenase; Provisional
Probab=68.96 E-value=6.1 Score=40.39 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=28.8
Q ss_pred cEEEECC-ChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGA-GSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
-|+|+|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 3899999 99999999999998 99999998753
No 478
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=68.77 E-value=5.7 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~ 151 (731)
..-|+|||+|.-|+.+|..|+.. |. +++++|.+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGK 372 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCE
Confidence 46799999999999999999999 87 688899874
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.69 E-value=5.4 Score=44.84 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.|+|||+|..|..+|..|.+. |.+|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 389999999999999999998 99999999864
No 480
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=68.64 E-value=5.8 Score=39.31 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
+.|+|.|-.|...|.+|+++ |+.|.+-=+.
T Consensus 4 ~~i~GtGniG~alA~~~a~a-g~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKA-GHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhC-CCeEEEecCC
Confidence 68999999999999999999 9999997443
No 481
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=68.61 E-value=6.2 Score=41.13 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.++|+|+|..|..+|..|++. |.+|.|+.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 589999999999999999998 99999998753
No 482
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=68.45 E-value=6.7 Score=39.53 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=27.5
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEe
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLE 148 (731)
--|+|||||..++-=+..|.+. |.+|.|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKK-GCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 4599999999999999999998 99999985
No 483
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=68.38 E-value=5.8 Score=44.09 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHhhcCCC------eEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW------KVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~------~VlVLEaG~ 151 (731)
|+|||+|..||-++..||.. |. ++.|+|...
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDN 38 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCC
Confidence 79999999999999999998 87 899998764
No 484
>PRK07774 short chain dehydrogenase; Provisional
Probab=68.34 E-value=6.5 Score=39.91 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=28.5
Q ss_pred cEEEECC-ChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 119 DFIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 119 DvIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
-++|.|+ |..|..+|..|+++ |.+|+++.|.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALARE-GASVVVADIN 39 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3899998 99999999999998 9999999875
No 485
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=68.32 E-value=5.5 Score=43.88 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=27.0
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||.|..|+.+|..|| . |++|+++|+..
T Consensus 3 I~VIGlGyvGl~~A~~lA-~-G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIA-Q-NHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHH-h-CCcEEEEECCH
Confidence 789999999999997777 5 89999999875
No 486
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=68.24 E-value=6.3 Score=42.22 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCC-eEEEEecCCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAGIE 152 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG~~ 152 (731)
.-+.|||+|..|..+|..|+.. |+ +|+|+|.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 3599999999999999999998 86 8999998653
No 487
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.13 E-value=6.5 Score=43.41 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
.--|+|||.|..|..+|..|... |.+|+|+|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 34699999999999999999988 99999999764
No 488
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=67.87 E-value=7.1 Score=38.63 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
..-|+|||.|..|+.+|..|+.. |. ++.++|-.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 45699999999999999999999 88 58888865
No 489
>PRK07326 short chain dehydrogenase; Provisional
Probab=67.63 E-value=6.7 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=27.2
Q ss_pred EEEECC-ChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
++|+|+ |..|..+|.+|+++ |.+|+++.|.
T Consensus 9 ilItGatg~iG~~la~~l~~~-g~~V~~~~r~ 39 (237)
T PRK07326 9 ALITGGSKGIGFAIAEALLAE-GYKVAITARD 39 (237)
T ss_pred EEEECCCCcHHHHHHHHHHHC-CCEEEEeeCC
Confidence 788885 99999999999998 9999999875
No 490
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=67.38 E-value=5.7 Score=41.84 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|.|||.|..|...|..|++. |++|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 78999999999999999998 99999998764
No 491
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=67.10 E-value=6.9 Score=41.01 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhhcCC-CeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G-~~VlVLEaG~ 151 (731)
-.++|+|+|.+|..+|..|++. | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 3589999999999999999998 8 7999998864
No 492
>KOG1371|consensus
Probab=66.95 E-value=5.6 Score=41.88 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=26.0
Q ss_pred EEEECC-ChhHHHHHHHHhhcCCCeEEEEec
Q psy7389 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEA 149 (731)
Q Consensus 120 vIIVGs-G~aG~~aA~~LA~~~G~~VlVLEa 149 (731)
|+|.|+ |+.|.-++.+|.++ |.+|+++|-
T Consensus 5 VLVtGgaGyiGsht~l~L~~~-gy~v~~vDN 34 (343)
T KOG1371|consen 5 VLVTGGAGYIGSHTVLALLKR-GYGVVIVDN 34 (343)
T ss_pred EEEecCCcceehHHHHHHHhC-CCcEEEEec
Confidence 667765 99999999999999 999999994
No 493
>PRK08177 short chain dehydrogenase; Provisional
Probab=66.89 E-value=7.7 Score=38.84 Aligned_cols=31 Identities=35% Similarity=0.496 Sum_probs=27.7
Q ss_pred EEEEC-CChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIG-AGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVG-sG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|+|+| +|..|..+|.+|+++ |.+|+++.+.+
T Consensus 4 vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~ 35 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLER-GWQVTATVRGP 35 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 78888 588999999999998 99999999874
No 494
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.29 E-value=7.2 Score=40.56 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.9
Q ss_pred EEEECCC---hhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGAG---SAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG---~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
++|.|++ ..|..+|.+|+++ |.+|++..+.
T Consensus 10 ~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 10 GLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 8889987 6999999999999 9999998764
No 495
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=66.07 E-value=6.3 Score=47.12 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHh-hcCCCeEEEEecCC
Q psy7389 119 DFIIIGAGSAGCVLANRLS-EIKKWKVLLLEAGI 151 (731)
Q Consensus 119 DvIIVGsG~aG~~aA~~LA-~~~G~~VlVLEaG~ 151 (731)
-|.|||+|..|...|..+| .+ |+.|+++|..+
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCH
Confidence 3899999999999999999 77 99999999753
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=66.04 E-value=7.4 Score=43.21 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 118 ~DvIIVGsG~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
--|+|||.|..|..+|..|... |.+|+|.|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 3599999999999999999998 99999999764
No 497
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=66.02 E-value=7.5 Score=40.91 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=29.1
Q ss_pred EEEECC-ChhHHHHHHHHhhcCCCeEEEEecCC
Q psy7389 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEAGI 151 (731)
Q Consensus 120 vIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG~ 151 (731)
|+|.|+ |+.|..++.+|.++ |++|..+.+..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLR 34 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 899994 99999999999999 99999999975
No 498
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.97 E-value=7.4 Score=40.93 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=27.1
Q ss_pred EEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 120 FIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 120 vIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
|+|||+|..|+.+|..||.. |. ++.|+|-.
T Consensus 2 VlVVGaGGlG~eilknLal~-Gvg~I~IvD~D 32 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALS-GFRNIHVIDMD 32 (291)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCeEEEECCC
Confidence 79999999999999999998 86 78888865
No 499
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=65.91 E-value=7.7 Score=39.63 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=27.6
Q ss_pred EEEECC-ChhHHHHHHHHhhcCCCeEEEEecC
Q psy7389 120 FIIIGA-GSAGCVLANRLSEIKKWKVLLLEAG 150 (731)
Q Consensus 120 vIIVGs-G~aG~~aA~~LA~~~G~~VlVLEaG 150 (731)
++|.|+ |..|..+|.+|+++ |++|+++.+.
T Consensus 13 vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~ 43 (255)
T PRK07523 13 ALVTGSSQGIGYALAEGLAQA-GAEVILNGRD 43 (255)
T ss_pred EEEECCcchHHHHHHHHHHHc-CCEEEEEeCC
Confidence 899996 99999999999998 9999999875
No 500
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.83 E-value=7.7 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.4
Q ss_pred cccEEEECCChhHHHHHHHHhhcCCC-eEEEEecC
Q psy7389 117 TFDFIIIGAGSAGCVLANRLSEIKKW-KVLLLEAG 150 (731)
Q Consensus 117 ~~DvIIVGsG~aG~~aA~~LA~~~G~-~VlVLEaG 150 (731)
..-|+|||.|..|+.+|..||+. |. +++++|..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D 44 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFD 44 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 45699999999999999999998 87 88888865
Done!