RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7389
(731 letters)
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 333 bits (856), Expect = e-106
Identities = 193/630 (30%), Positives = 269/630 (42%), Gaps = 116/630 (18%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIE-EPFFADVP-GLAPLISRSNID 172
M +D++I+G+GSAG VLA RLS+ VL+LEAG +P A L++ D
Sbjct: 5 KMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYD 63
Query: 173 WNYMTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNEGWG 231
W + T P+PH W RGKV+GGSS+IN M+Y RG+ ED+D W G GW
Sbjct: 64 WGFRTEPEPH----LRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWP 119
Query: 232 YDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER 291
YD+VL YFK++ED +HG GG V + I+A ++ G+P
Sbjct: 120 YDDVLPYFKRAEDLLGVGGQ-DLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTT 178
Query: 292 DLNAENQVGGF------ICGD---STNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNK 342
GF IC S A+++P K R NLT+LT A V RI+ +
Sbjct: 179 PDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALK-RPNLTLLTGARVRRILLEG---- 233
Query: 343 HKKLVAKSVEFFYKKK--LRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTL 400
+ A VE + A A +EV+ +AGAINSPK+L+LSGIGP DHL I +
Sbjct: 234 -DR--AVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVV 290
Query: 401 VDLK-VGHNLQDHLTSDGIVIAFPKTATDRMYK---KKVSDAFEYKESRCGPLASTGPLQ 456
L VG NLQDHL A T D + K A Y +R GP A+ +
Sbjct: 291 GRLPGVGQNLQDHLEIYVAFEATEPTN-DSVLSLFSKLGIGADRYLLTRDGPGATN-HFE 348
Query: 457 CGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKP 516
G + + + PD Q+H P+ + G T+ ++P
Sbjct: 349 GGFV---RSGPAGEYPDGQYHFAPLPLAIR-------------AAGAEHGFTLHVGPMRP 392
Query: 517 KSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDMWNSIPP 576
KSRG + L + DP P+I P + + + D +F A + I+ + +D
Sbjct: 393 KSRGSVTLRSPDPD-NRPVIDPNYLSAEGDRAIFRA--GIRLTREIIGQPALDARR---K 446
Query: 577 SNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLTD 636
+ + T D S+ I T H G+
Sbjct: 447 AELAPGPRVTTDEDISAA--------------IRFLARTAYH----------PMGTC--- 479
Query: 637 LNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVD 696
+ G+ A + DDP LRVHG++NLRVVD
Sbjct: 480 ------RMGSDP-AAVV--------------------DDP------YLRVHGLENLRVVD 506
Query: 697 ASIMPKIVRGNTNAPTIMIAEKAADMIKED 726
AS+MP N N I +AE+AAD I D
Sbjct: 507 ASVMPTSTGVNPNLTIIALAERAADHILGD 536
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 326 bits (838), Expect = e-103
Identities = 172/449 (38%), Positives = 228/449 (50%), Gaps = 65/449 (14%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEP---FFADVP-GLAPLISRSN 170
M +D+IIIGAGSAGCVLANRLSE VLLLEAG + FF +P LA +
Sbjct: 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKR 62
Query: 171 IDWNYMTMPDPHACKARPNGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM-GNE 228
+W Y T P+PH N R RGKV+GGSS+IN M+Y RGNA DYD W + G E
Sbjct: 63 YNWAYETEPEPHM-----NNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLE 117
Query: 229 GWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPV---LIKAWKE 285
GW Y + L YFKK+E + E +Y G G +V N P+ ++A +
Sbjct: 118 GWSYADCLPYFKKAETRDGGE-----DDYRGGDGPLSVTR-GKPGTN-PLFQAFVEAGVQ 170
Query: 286 KGYPE-RDLNAENQVGGFICGDST--NG-------AFIRPIRKKRKNLTILTEAHVTRII 335
GYP DLN Q GF D T NG A++ P KR NLTI+T A RI+
Sbjct: 171 AGYPRTDDLNGYQQ-EGFGPMDRTVTNGRRWSAARAYLDPA-LKRPNLTIVTHALTDRIL 228
Query: 336 FDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSL 395
F+ K+ A VE+ ARA++EVI SAGAINSP++L LSGIGP +HL L
Sbjct: 229 FEG-----KR--AVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKEL 281
Query: 396 NIKTLVDLK-VGHNLQDHL------TSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGP 448
I + DL VG NLQDHL V +P + + K A E+ + G
Sbjct: 282 GIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYPAL---KWWNKPKIGA-EWLFTGTGL 337
Query: 449 LASTGPLQCGVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGIT 508
AS + G F +++ +D P+IQ+H P+++R +N V G
Sbjct: 338 GASNH-FEAGGFIRSR--AGVDWPNIQYHFLPVAIRYDGSNAVKG-----------HGFQ 383
Query: 509 VRPILLKPKSRGYIQLNATDPLWGPPLIF 537
++ SRG ++L + DP P ++F
Sbjct: 384 AHVGPMRSPSRGSVKLKSADPRAHPSILF 412
Score = 129 bits (326), Expect = 2e-31
Identities = 45/65 (69%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Query: 660 TIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKA 719
T HP TCKMG DP +VVD RVHGV+ LRVVDASIMP I GN NAPTIMIAEKA
Sbjct: 470 TAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKA 527
Query: 720 ADMIK 724
AD+I+
Sbjct: 528 ADLIR 532
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 223 bits (570), Expect = 1e-64
Identities = 154/439 (35%), Positives = 209/439 (47%), Gaps = 54/439 (12%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG---IEEPFFADVPG-LAPLISRSNIDWN 174
D+IIIG GSAG VLA RLSE VL+LEAG +P LA +W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 175 YMTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW-EAMGNEGWGYD 233
Y T P+PH N R ARGKV+GGSS+IN MIY RGN DY++W + G E W Y
Sbjct: 61 YETEPEPHM----NNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116
Query: 234 EVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYPER-D 292
+ L Y+K+ E E P Y G G V P + I+A E GY + D
Sbjct: 117 DCLPYYKRLETTFGGE----KP-YRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPD 171
Query: 293 LNAENQVG-GFICGDSTNG-------AFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHK 344
+N Q G G + NG A++ P KR NL + T A VT+I F+ N+
Sbjct: 172 VNGFRQEGFGPMDSTVHNGRRVSAARAYLHPA-MKRPNLEVQTRAFVTKINFEG--NR-- 226
Query: 345 KLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLK 404
A VEF + A KEVI SAGAINSP++L LSGIG +HL L I+ + L
Sbjct: 227 ---ATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLP 283
Query: 405 -VGHNLQDHLTSDGIVIAFPKTATDRMYK-----KKVSDAFEYKESRCGPLASTGPLQCG 458
VG NLQDHL + + +Y K+ ++ R G ++ + G
Sbjct: 284 GVGENLQDHLE---VYVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKG-AGASNHFEGG 339
Query: 459 VFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKS 518
F ++ D +D P+IQ+H P+++R T A G V + S
Sbjct: 340 GFVRS--NDDVDYPNIQYHFLPVAIRYDGTKAPKAH-----------GFQVHVGPMYSNS 386
Query: 519 RGYIQLNATDPLWGPPLIF 537
RG++++ + DP P ++F
Sbjct: 387 RGHVKIKSKDPFEKPEIVF 405
Score = 107 bits (269), Expect = 2e-24
Identities = 43/65 (66%), Positives = 49/65 (75%)
Query: 660 TIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEKA 719
T HP GTCKMGP D SVVD RVHG++ LRVVDASIMP+I GN NAP IM+ EKA
Sbjct: 463 TALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKA 522
Query: 720 ADMIK 724
AD+I+
Sbjct: 523 ADIIR 527
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 162 bits (411), Expect = 5e-43
Identities = 122/451 (27%), Positives = 174/451 (38%), Gaps = 90/451 (19%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLA---------PLISRS 169
D +++G GSAGCV+A RLSE V +LEAG P + D L P+ S
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAG---PGYRDPSRLPAQLTDGLRLPIGPAS 58
Query: 170 NIDWNYMTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAMGNEG 229
+ W Y P RG+V+GGS +N + R D+D W G
Sbjct: 59 PVVWRY-----GVELTDGPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPG 110
Query: 230 WGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP 289
W +D+VL +F+ E + D + HG G V D + A G+
Sbjct: 111 WSWDDVLPHFRAIETDLDFD-----GPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFG 165
Query: 290 ER-DLNAENQVGGFICGD-----------STNGAFIRPIRKKRKNLTILTEAHVTRIIFD 337
DLN G ST A++ P K R NLT+ + V RI+F
Sbjct: 166 WIADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALK-RPNLTVEADTRVVRILFS 224
Query: 338 KTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNI 397
T A VE R RA + V+ AGA+ S +L+LSGIGP + L + I
Sbjct: 225 GTR-------AVGVEVLGDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGI 276
Query: 398 KTLVDLKVGHNLQDHLTSDGIVIAFPKTATDRMYKKKVSDAFEYKESRCGPLASTGPLQC 457
++DL VG + DH + + T T P+
Sbjct: 277 AVVLDLPVGSDFVDH-PEWVLPYRWRPTHD---------------------RPDTSPV-- 312
Query: 458 GVFAKTKLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPK 517
L L+ DI+ +R P A T + P + D + L++P
Sbjct: 313 -------LETVLNTADIE-------IR-----PYTAGFTALVPGSPRDDPHLGVALMRPH 353
Query: 518 SRGYIQLNATDPLWGPPLIFPKFFTKKPDLD 548
SRG I+L + DP PP I ++ + D
Sbjct: 354 SRGRIRLASADPA-DPPRIEHRYDSSAADRA 383
Score = 82.2 bits (203), Expect = 2e-16
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 659 GTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMIAEK 718
T QH G+C+MG +DDPG+VVDAR RV GV+ L VVD SI+P I +A +M+AE+
Sbjct: 422 ATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAER 481
Query: 719 AADMI 723
AA+ +
Sbjct: 482 AAEFL 486
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 150 bits (381), Expect = 2e-41
Identities = 72/238 (30%), Positives = 94/238 (39%), Gaps = 46/238 (19%)
Query: 189 NGR-CYWARGKVMGGSSTINYMIYARGNAEDYDEWE-AMGNEGWGYDEVLEYFKKSEDNE 246
NGR G +GG S++N+ R A DEW G EGWGYD+ L Y K E
Sbjct: 15 NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE--- 71
Query: 247 DKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKEKGYP----ERDLNAENQ--VG 300
G G T L+KA +E GYP R+ N +
Sbjct: 72 ------------GPLGVTT--KGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFC 117
Query: 301 GFICGD----STNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNKHKKLVAKSVEFFYK 356
G C ST ++RP +NL ILT A +II + + V
Sbjct: 118 GLGCPTGAKQSTARTWLRPAL--ERNLRILTGAKAEKIIIL---GRGGRAVGVEARDGGG 172
Query: 357 KKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLNIKTLVDLKVGHNLQDHLT 414
R A KEV+ +AGA+N+P +L+ SG+G H VG NLQ H
Sbjct: 173 GIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLHPV 218
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 125 bits (317), Expect = 8e-34
Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 65/204 (31%)
Query: 516 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVADDLKPWIKAIVKKDIVDMWNSIP 575
P+SRG + L+++DP G P+I P + + DL A A+ + + +
Sbjct: 1 PRSRGRVTLSSSDP-LGLPVIDPNYLSDPADLAALRA--------AL--RLARRILAAAL 49
Query: 576 PSNKLKRIKPTVDSWTSSFRNNRYEEVVLTRLRIGHTRVTHNHLFKKLPPPICQCGSVLT 635
P + + +
Sbjct: 50 VE------------------------------------------LTPGPVEVVPGAAEAS 67
Query: 636 DLNKVFYKFGTWDYWACIAMQFTGTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVV 695
D D T HP+GTC+MG D G VVD LRVHGV NLRVV
Sbjct: 68 D-----------DEILEYIRAAAVTSWHPMGTCRMGADPDDG-VVDPDLRVHGVDNLRVV 115
Query: 696 DASIMPKIVRGNTNAPTIMIAEKA 719
DAS+ P GN +AE+A
Sbjct: 116 DASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 87.6 bits (217), Expect = 7e-18
Identities = 90/316 (28%), Positives = 135/316 (42%), Gaps = 59/316 (18%)
Query: 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDW 173
GD +D+I++G G+AGC LA LS+ + VLLLE G PF +N+ +
Sbjct: 52 GDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERG-GVPF-----------GNANVSF 97
Query: 174 --NY-MTMPDPHACKA-----RPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEWEAM 225
N+ + + D A +G AR +V+GG + IN Y+R + +
Sbjct: 98 LENFHIGLADTSPTSASQAFISTDG-VINARARVLGGGTCINAGFYSRASTRFIQK---- 152
Query: 226 GNEGWGYDEVLEYFKKSEDNEDKEIYHKNPEYHGKGGYQTVEWLPYADKNLPVLIKAWKE 285
GW V E + E ++I H P+ +Q D L V + +
Sbjct: 153 --AGWDAKLVNESYPWVE----RQIVHW-PKV---APWQAA----LRDSLLEVGVSPFNG 198
Query: 286 KGYPERDLNAENQVGGFI---CGDSTNGAFIRPIRKKRKNLTILTEAHVTRIIFDKTPNK 342
Y D +VGG I G A + K L +L A V +I+FD +
Sbjct: 199 FTY---DHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNK-LRVLLHATVQKIVFDTS--- 251
Query: 343 HKKLVAKSVEF------FYKKKLRRARAKKEVISSAGAINSPKILMLSGIGPKDHLTSLN 396
K+ A V F ++ L + E+I SAGAI SP++L+LSGIGPK L
Sbjct: 252 GKRPRATGVIFKDENGNQHQAFLSNNK-GSEIILSAGAIGSPQMLLLSGIGPKKELKKHK 310
Query: 397 IKTLVDLK-VGHNLQD 411
I ++ + VG + D
Sbjct: 311 IPVVLHNEHVGKGMAD 326
Score = 34.0 bits (78), Expect = 0.28
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 660 TIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTIMI 715
TI H G C +G VVD +V GV LRV+D S + N A +M+
Sbjct: 519 TIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMM 568
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 42.1 bits (100), Expect = 8e-04
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D I+IGAG AG V A R +++ K KV L+E G
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 41.4 bits (98), Expect = 0.001
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D ++IGAG AG V A R +++ KV L+E G
Sbjct: 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL-KVALVEKG 36
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 41.0 bits (96), Expect = 0.002
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 114 GDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M D +IIG G G A L+E + V +LEAG
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAG 36
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 40.6 bits (96), Expect = 0.003
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D I+IGAG AG LA R + + KV L+E
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGL-GMKVALIE 35
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 40.1 bits (94), Expect = 0.003
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M +D +I+GAG AG A RL++ VL+LE G
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKG 35
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 39.9 bits (94), Expect = 0.004
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLE 148
M +D +IIG G G A LSE + V LLE
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 39.6 bits (93), Expect = 0.004
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIEEPF---------FADVPGLAPLI 166
D +I+GAG AG +LA RL + + +VLL++AG PF F D+ LAP +
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCV 58
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.5 bits (83), Expect = 0.006
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 122 IIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
I+GAG +G V A L++ + VL+LE
Sbjct: 1 IVGAGLSGLVAAYLLAK-RGKDVLVLEKR 28
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 39.0 bits (91), Expect = 0.007
Identities = 17/31 (54%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD+II+GAG +G VLAN L+++ K +VL++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVE 31
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 38.4 bits (90), Expect = 0.007
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D ++IG G G A L+ + V LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERG 31
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 38.3 bits (89), Expect = 0.013
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D II+G AG VLA LS+ + KVL+LE
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLE 63
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 38.0 bits (89), Expect = 0.015
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEE 153
D +I+G G G LA L+ KV L+EA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLP 35
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 37.8 bits (88), Expect = 0.018
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D I+GAG AG LA L+ V LLE
Sbjct: 1 KMLDVAIVGAGPAGLALALALAR-AGLDVTLLER 33
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 37.7 bits (88), Expect = 0.019
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D II+G G G LA LS + K K+ L+EA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 37.9 bits (89), Expect = 0.020
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D IIG G AG LA L+ + W+V L EA
Sbjct: 262 DAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 36.9 bits (86), Expect = 0.028
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D +++GAG AG A RL++ K +VLLLE
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLE 30
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 36.5 bits (85), Expect = 0.046
Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
FD++I+GAG +G V+A +++ K +VL++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEK 32
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 36.0 bits (83), Expect = 0.073
Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 37/180 (20%)
Query: 215 NAEDYDEWEAMGNEGWGYDEVLEYFKKSEDNEDKEIYHK------NPEYHGKGGYQTVEW 268
AED EW+ + Y + S D D+ I H EY G+ +Q
Sbjct: 143 AAEDDAEWDRL------YTKAESLIGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQP--- 193
Query: 269 LPYADKNLPVLIKAWKEKGYPERDLNAENQVGGFICGDSTNGAFIRPIRKKRKNLTILTE 328
LP+ + Y E ++ + V D + T+LT
Sbjct: 194 -------LPLACHRRTDPTYVE--WHSADTVFDLQPNDD----------APSERFTLLTN 234
Query: 329 AHVTRIIFDKTPNKHKKLVAKSVEFFYKKKLRRARAKKEVISSAGAINSPKILMLSGIGP 388
TR++ ++T ++ A V +A V++ GA+++P+IL+ SG G
Sbjct: 235 HRCTRLVRNET--NESEIEAALVRDLLSGDRFEIKADVYVLA-CGAVHNPQILVNSGFGQ 291
Score = 32.5 bits (74), Expect = 0.82
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 656 QFT--GTIQHPVGTCKMGPKDDPGSVVDARLRVHGVQNLRVVDASIMPKIVRGNTNAPTI 713
QF G H GT ++G D+ +V + +VH +NL V +P N ++
Sbjct: 471 QFMEPGLALHLAGTTRIG-FDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSM 529
Query: 714 MIAEKAADMIK 724
A K+A+ I
Sbjct: 530 CYAIKSAEYII 540
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 35.6 bits (83), Expect = 0.083
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD IIIG G AG + A ++ + +VLL++ G
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKG 35
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 35.5 bits (83), Expect = 0.094
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D I+IGAG G V A R +++ KV ++E
Sbjct: 2 AFEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKE 36
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 34.6 bits (80), Expect = 0.15
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D +IIG G AG A RL+ KV L+E
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIER 30
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 34.7 bits (80), Expect = 0.19
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKK-WKVLLLEAGIEEPFFADVPGLA 163
+D ++IGAG G A L+ + KV +LE D G
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLA--RAGLKVTVLEK-------NDRVGGR 41
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 34.1 bits (79), Expect = 0.28
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
M D I++GAG AG V A L++ K +VLLL+
Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADAGK-RVLLLD 34
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 33.2 bits (76), Expect = 0.55
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 113 DGDMTFDFIIIGAGSAGCVLANRLSEIKK--WKVLLLEA 149
T D II+GAG AG A E+KK ++V +LEA
Sbjct: 3 LPPKTADVIIVGAGLAGLSAA---YELKKAGYQVQILEA 38
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 33.2 bits (77), Expect = 0.56
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 116 MTFDF--IIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
MT D+ I+IG GS G ANR + KV L+EA
Sbjct: 1 MTKDYDLIVIGGGSGGIASANRAAMYGA-KVALIEA 35
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 32.3 bits (74), Expect = 0.75
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D IIG G AG LA L+ K KV+ ++
Sbjct: 2 YDVAIIGLGPAGSALARLLA--GKMKVIAID 30
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 32.4 bits (74), Expect = 0.78
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPF 155
D +IG G AG +A L+ +V L+E P
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIPG 36
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 32.5 bits (74), Expect = 0.78
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD I++GAG GC A L++ K K LLLE
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGK-KTLLLE 30
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model represents
a family of bacterial lycopene cyclases catalyzing the
transformation of lycopene to carotene. These enzymes
are found in a limited spectrum of alpha and gamma
proteobacteria as well as Flavobacterium.
Length = 370
Score = 32.5 bits (74), Expect = 0.83
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIK-KWKVLLLEAG 150
D II+G G AG ++A RL + +++ ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 32.1 bits (74), Expect = 0.98
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
M FD ++IG G AG A +E K +V L+ G
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAEAGK-RVALVAKG 34
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 32.2 bits (74), Expect = 1.0
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD I+IG G G +A + + KV L+E G
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAAG-RGLKVALVEKG 44
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 32.2 bits (73), Expect = 1.1
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 120 FIIIGAGSAGCVLANRL-SEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYMTM 178
+I+G G+AG A L + ++ L+ + ++ L+ + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR--CPLSLYVGGGIASLEDLRY 58
Query: 179 PDPHACKAR 187
P
Sbjct: 59 PPRFNRATG 67
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 31.8 bits (73), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D I+IG G G V A R +++ KV L+E
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQLGL-KVALVE 31
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 31.8 bits (73), Expect = 1.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKW----KVLLLE-AGIE 152
+ D +IIG G AGC A E K+W KVL++E A I+
Sbjct: 10 VDTDILIIGGGMAGCGAA---FEAKEWAPDLKVLIVEKANIK 48
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 31.4 bits (72), Expect = 1.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 118 FDFIIIGAGSAGCVLA---NRLSEIKKWKVLLLEA 149
D II+G G AG LA +RLS V L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSH-GGLPVALIEA 37
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 31.3 bits (71), Expect = 2.0
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 17/96 (17%)
Query: 111 EQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISR-- 168
D IIGAG +G A L + ++ E D G +R
Sbjct: 2 TVGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK-------RDDVGGTWRYNRYP 54
Query: 169 ---SNIDWNY-----MTMPDPHACKARPNGRCYWAR 196
+ + A + Y
Sbjct: 55 GLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKD 90
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 31.1 bits (70), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
M +D I+IG GS G A R + K KV L+E
Sbjct: 46 RMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVE 78
>gnl|CDD|214474 smart00022, PLAc, Cytoplasmic phospholipase A2, catalytic subunit.
Cytosolic phospholipases A2 hydrolyse arachidonyl
phospholipids. Family includes phospholipases B
isoforms.
Length = 549
Score = 31.2 bits (71), Expect = 2.4
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 25/89 (28%)
Query: 197 GKVMGGSSTI--NYMIYARGNAEDYDEWEAMGNEGWGYDEVLEYFKK-SEDNEDKEIYHK 253
G +MG SS++ +++ + E + K S D++D IY
Sbjct: 296 GFIMGTSSSLFNRFLLVLSN---------STMEESLIKIIIKHILKDLSSDSDDIAIYPP 346
Query: 254 NPEYHGKGGYQTVEWL------PYADKNL 276
NP ++ ++ D +L
Sbjct: 347 NP-------FKDDAYVQRMLTNSLGDSDL 368
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 31.0 bits (71), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 111 EQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+ D +IIG+G+AG LA RL+E +V +L G
Sbjct: 2 NTSPEHQCDVLIIGSGAAGLSLALRLAE--HRRVAVLSKG 39
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 30.6 bits (70), Expect = 3.0
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D I+IG G+AG + A ++ + +VLL++ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGR-RVLLIDKG 32
>gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 436
Score = 30.7 bits (70), Expect = 3.3
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWNYM- 176
D I IG G LA L E K L LE +P F+ PG+ L+ S + ++
Sbjct: 6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLE---RKPDFSWHPGM--LLEGSTLQVPFLK 60
Query: 177 ---TMPDP 181
T+ DP
Sbjct: 61 DLVTLVDP 68
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 30.2 bits (69), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 116 MTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+ D I+GAG +G A L++ KV + E
Sbjct: 24 LEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFE 55
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 30.5 bits (69), Expect = 3.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 112 QDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
D + II+GAG +G A LSE +L+LEA
Sbjct: 21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEA 58
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 30.2 bits (68), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+D+++IG GS G A R +E K LL+EA
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEHGA-KALLVEA 33
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 30.3 bits (69), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE----AGIEEPFF 156
M D +++GAG AG A L+ KV L+E A + +P F
Sbjct: 1 MMHSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPLAALADPAF 45
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 30.3 bits (69), Expect = 4.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
+D IIIG GS +L R ++ ++ ++E G
Sbjct: 1 HYDLIIIGTGSGNSILDERFAD---KRIAIVEKG 31
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer membrane
[Transport and binding proteins, Unknown substrate].
Length = 322
Score = 30.0 bits (68), Expect = 4.2
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 546 DLDVFVADDLKPWIKAIVKKDIV-DMWNSIPPSNKLKRIKPTVDSWTSSFR 595
+ D V + P ++ + D KL+ I P VDS T + R
Sbjct: 172 EADFSVPERDLPQLRRGQTLTVELDALPGEEFKGKLRFIDPRVDSGTGTVR 222
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 30.0 bits (68), Expect = 4.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 110 EEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
E+ + D II+GAG +G A L++ KV + E
Sbjct: 23 EDLLDYLESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFER 61
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 30.0 bits (68), Expect = 4.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
FD ++IG G AG A +E KV LL
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLS 36
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional.
Length = 394
Score = 29.8 bits (68), Expect = 4.8
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 338 KTPNKHKKLVAKSVEFFYKKKLRRA------RAKKEVISSAGAINSPKILMLSGIGPKDH 391
K NK K V K + + + R + KE+ A + + L + ++
Sbjct: 273 KLSNKFIKDVVKLLALYALRSERSWEKLDLYQYGKEIALLAEDLRQAQGLSVDEEAIQEL 332
Query: 392 LTSLNIKTLVDLKV-GHNLQDHL 413
+L I +L V G +L H
Sbjct: 333 YQALPIHDKKELAVNGGDLLKHF 355
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 30.1 bits (68), Expect = 5.0
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
T+D I+IG G AG LA +L+ K KV L+E
Sbjct: 3 TYDLIVIGFGKAGKTLAAKLASAGK-KVALVE 33
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.0 bits (68), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 119 DFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
D ++IG+G AG A +E KV ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGL-KVAVVEKG 31
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 30.1 bits (68), Expect = 5.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 107 NNREEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
+ + D FD I+IGAG+AG + A + I KVLL+E
Sbjct: 6 SELSPERWDAEFDVIVIGAGAAG-MSAALFAAIAGLKVLLVER 47
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 30.0 bits (69), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 115 DMTFDFIIIGAGSAGC 130
+D I++G G AGC
Sbjct: 2 PEEYDVIVVGGGHAGC 17
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 29.7 bits (67), Expect = 6.4
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 24/78 (30%)
Query: 118 FDFIIIGAGSAGCVLANRLS---EIKKWKVLLLEAGIEEPFFADVPGLAPLISRSNIDWN 174
FD +I+G G G LA L K KVLLL+A D P L N
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV-------DNPKLK--------SRN 45
Query: 175 YMTMPDPHACKARPNGRC 192
Y P + R
Sbjct: 46 YEKPDGP------YSNRV 57
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 29.3 bits (66), Expect = 7.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 118 FDFIIIGAGSAGCVLANRLSE 138
D +++G G AG +A ++SE
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSE 49
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 29.5 bits (67), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 116 MTFDF-----IIIGAGSAGCVLANRLSEIKKWKVLLL 147
M DF +IIG+G AG A L+ ++V +L
Sbjct: 1 MNTDFEHPDVLIIGSGLAGLTAALSLAP--SFRVTVL 35
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 29.2 bits (66), Expect = 7.6
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLEAG 150
FD IIIG G AG A RL+E K K ++ AG
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGK-KCAIIAAG 32
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 29.5 bits (67), Expect = 7.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 115 DMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
D +I+GAG G LAN L +VL+LE
Sbjct: 8 AHDTDVVIVGAGPVGLTLANLLG-QYGVRVLVLE 40
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 29.0 bits (65), Expect = 8.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 110 EEQDGDMTFDFIIIGAGSAGCVLANRLSEIKKWKVLLLEA 149
E+ D +I+GAG +G A L++ K KV ++E
Sbjct: 10 EDLLDYAESDVVIVGAGPSGLTAAYYLAK-KGLKVAIIER 48
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 29.4 bits (66), Expect = 9.0
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 118 FDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
+D I+IG+G G V A +L+ +K KVL+LE
Sbjct: 1 YDAIVIGSGIGGLVTATQLA-VKGAKVLVLE 30
>gnl|CDD|236796 PRK10922, PRK10922, 3-octaprenyl-4-hydroxybenzoate decarboxylase;
Provisional.
Length = 497
Score = 29.1 bits (65), Expect = 9.0
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 163 APLISRSNIDWNYMTMPDPHACKARPNGRCYWARGKVMGGSSTINYMIYARGNAEDYDEW 222
APLI+ W PH K R N Y R +++G + I + RG A DY EW
Sbjct: 156 APLIT-----WGLTVTRGPH--KERQNLGIY--RQQLIGKNKLIMRWLSHRGGALDYQEW 206
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.0 bits (65), Expect = 9.4
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 117 TFDFIIIGAGSAGCVLANRLSEIKKWKVLLLE 148
T D I++GAG AG V A L++ K +VL+L+
Sbjct: 5 TADVIVVGAGLAGLVAAAELADAGK-RVLILD 35
>gnl|CDD|224210 COG1291, MotA, Flagellar motor component [Cell motility and
secretion].
Length = 266
Score = 28.7 bits (65), Expect = 9.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 120 FIIIGAGSAGCVLANRLSEIKK-WKVLL 146
II+G G ++ N +K K L
Sbjct: 37 LIIVGGGIGAFMVGNPGKVVKATPKALK 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,849,578
Number of extensions: 3734122
Number of successful extensions: 3299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3262
Number of HSP's successfully gapped: 99
Length of query: 731
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 627
Effective length of database: 6,324,786
Effective search space: 3965640822
Effective search space used: 3965640822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)