RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy739
(438 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 279 bits (717), Expect = 4e-90
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 201 KKLKVFLDILLELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDK 260
+ L +L+ ++ D + D +T I G ETSA F + L PEI +
Sbjct: 222 EVPADILTQILKAEEGA--QDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVAR 279
Query: 261 VYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLP 320
+ E+ + G R ++ EDL +L Y+ QVLKE+LRL+P R + EE I +P
Sbjct: 280 LQAEVDEVIGS-KRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVP 338
Query: 321 KDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAM 380
+ ++ + Y+++P FNPD F P A + ++++ FS G R CIG ++A
Sbjct: 339 GNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPG--APKPRFTYFPFSLGHRSCIGQQFAQ 396
Query: 381 LSMKVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPS 431
+ +KV+++ LL++ E + V + L+ ++ + L R +P+
Sbjct: 397 MEVKVVMAKLLQRLEFRL-VPGQRFGLQEQATLKPLDPVLCTLRPRGWQPA 446
Score = 117 bits (295), Expect = 4e-29
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 68 PEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLNNTKTLEKGPAYKFFLNTV 127
+ + +KY + V H+ +IV+ PE ++ L +TK + Y+
Sbjct: 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVF 68
Query: 128 GTGLF------SAPVEKWRRNRKVITPAFNMNLMTHFIPVFREKNAILMNRLKKFENTGK 181
G LF E+W + R+VI AF+ + + + F EK L+ L+ +
Sbjct: 69 GERLFGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQT 128
Query: 182 TFDLWEYISGAALDIICHS 200
+ + ++ A+DI+ +
Sbjct: 129 PVSMQDMLTYTAMDILAKA 147
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 276 bits (708), Expect = 1e-89
Identities = 64/424 (15%), Positives = 130/424 (30%), Gaps = 81/424 (19%)
Query: 48 KIPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIV 107
++ A P + +P + + + + F + ++ PE ++
Sbjct: 3 RLSLREAWPYLK---DLQQDP---LAVLLAWGRAHPRLF-LPLPRFPLALIFDPEGVEGA 55
Query: 108 LNNTKTLEKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFNMNLMTHFIPVFREKNA 167
L T + Y+ G GL + E W+ RK + F + + E+
Sbjct: 56 LLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEAR 115
Query: 168 ILMNRLKKFENTGKTFDLWEYISGAALDIICHS--------------------------- 200
+ G+ DL + +L ++ +
Sbjct: 116 AFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRS 170
Query: 201 --------------KKLKVFLDILLEL--KDAGAHFTDADIRDEVITMMIGGSETSALTN 244
K L +H E +T+++ G ET A
Sbjct: 171 PLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASAL 230
Query: 245 CFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVF 304
+ LL P+ Q +V + + +E LRL+P +
Sbjct: 231 TWSFLLLSHRPDWQKRVAESEEAALA-------------------AFQEALRLYPPAWIL 271
Query: 305 LRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFI 364
R++ + + LP +++ P T ++ + + F P+ F E +
Sbjct: 272 TRRLERPLLLGEDRLPPGTTLVLSPYVTQRL--HFPDGEAFRPERFLEE--RGTPSGRYF 327
Query: 365 AFSGGARGCIGSKYAMLSMKVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLV 424
F G R C+G +A+L +++ R+F + ++ + +R G P R
Sbjct: 328 PFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPL---PFPRVLAQVTLRPEGGLPARPR 384
Query: 425 TRDR 428
R
Sbjct: 385 EEVR 388
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 273 bits (699), Expect = 2e-87
Identities = 82/453 (18%), Positives = 161/453 (35%), Gaps = 76/453 (16%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLN 109
G+ F +P +M ++ ++ F + + +++S +
Sbjct: 8 RVSGGHDEHGHLEEFRTDPIGLMQRV---RDELGDVGTFQLAGKQVVLLSGSHANEFFFR 64
Query: 110 NT-KTLEKGPAYKFFLNTVGTG-LFSAP-------------------------------- 135
L++ AY F G G +F A
Sbjct: 65 AGDDDLDQAKAYPFMTPIFGEGVVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRRM 124
Query: 136 VEKWRRNRKV-ITPAFNMNLMTHFI-----------PVFREKNAILMNRLKKFENTGKTF 183
+ W ++ + +T + + A L + L++ +
Sbjct: 125 IADWGEAGEIDLLDF--FAELTIYTSSACLIGKKFRDQLDGRFAKLYHELERGTDPLAYV 182
Query: 184 DLW-------------EYISGAALDII-------CHSKKLKVFLDILLELKDA--GAHFT 221
D + + DI+ K + LD+L+ +K F+
Sbjct: 183 DPYLPIESFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFS 242
Query: 222 DADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEMEDL 281
+I I+MM G TS+ T + L L H + V DE+ ++GD R V L
Sbjct: 243 ADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGD-GRSVSFHAL 301
Query: 282 AKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYYKN 341
++ +E VLKETLRL P + +R E ++ + + + V P ++ + + +
Sbjct: 302 RQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPD 361
Query: 342 PKQFNPDNFT-PEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKFEVQTDV 400
P F P + P +++++I F G C+G+ +A++ +K + S LLR++E +
Sbjct: 362 PHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQ 421
Query: 401 KMEDIK-LKVDLLMRSVHGYPVRLVTRDRRPSH 432
E + ++++ VR R H
Sbjct: 422 PPESYRNDHSKMVVQLAQPAAVRYRRRTGVHHH 454
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 270 bits (692), Expect = 7e-86
Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 13/238 (5%)
Query: 200 SKKLKVFLDILLELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQD 259
++ F L+ + T ++ ++ M+I +T +++ F L L+ HP +++
Sbjct: 272 LEECMDFATELILAEK-RGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEE 330
Query: 260 KVYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTL 319
+ EI ++ G+ R ++++D+ KL ME + E++R PV + +RK E+ I Y +
Sbjct: 331 AIIKEIQTVIGE--RDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGYPV 388
Query: 320 PKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYA 379
K N+I+ H E ++ P +F +NF F F G RGC G A
Sbjct: 389 KKGTNIILNIGRMHRLE-FFPKPNEFTLENFAKN----VPYRYFQPFGFGPRGCAGKYIA 443
Query: 380 MLSMKVLISTLLRKFEVQTD--VKMEDIKLKVDLLMR---SVHGYPVRLVTRDRRPSH 432
M+ MK ++ TLLR+F V+T +E I+ DL + + + + R+
Sbjct: 444 MVMMKAILVTLLRRFHVKTLQGQCVESIQKIHDLSLHPDETKNMLEMIFTPRNSDRCL 501
Score = 141 bits (357), Expect = 3e-37
Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 13/191 (6%)
Query: 13 SLTVSNIIFYVFVTTLVAYAVNFKRKRQRLEYLASKIPGPPALPIVGNGLAFIGNPEDVM 72
+ V + T + V + S IPGP +G ++ +
Sbjct: 18 PEAMPAATMPVLLLTGLFLLV---WNYEGT----SSIPGPGYCMGIGPLISHGRFLWMGI 70
Query: 73 GKI-EMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLNNTKTLEKGPAYKFFLNTVGT-- 129
G + Y + W+ E +I+SK + ++ + K L +G
Sbjct: 71 GSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHNH-YSSRFGSKLGLQCIGMHE 129
Query: 130 --GLFSAPVEKWRRNRKVITPAFNMNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWE 187
+F+ E W+ R A + + + V E ++RL++ N D+
Sbjct: 130 KGIIFNNNPELWKTTRPFFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLT 189
Query: 188 YISGAALDIIC 198
+ LD
Sbjct: 190 LLRRVMLDTSN 200
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 264 bits (678), Expect = 3e-84
Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%)
Query: 206 FLDILLELKD-AGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDE 264
L LLE KD G + +I D+V+ ++ GSET A T + L L HPE D++ DE
Sbjct: 244 LLTALLEAKDDNGDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDE 303
Query: 265 IYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCN 324
+ ++ G RPV ED+ KL + V+ E +RL P V R+ E ++ Y +P +
Sbjct: 304 VEAVTGG--RPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRIPAGAD 361
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
+I P + K Y + +F+PD + PE A KY+ FS G R C ++M +
Sbjct: 362 IIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSMAQLT 421
Query: 385 VLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPSH 432
++ + L K+ + + ++V + +R VR V R H
Sbjct: 422 LITAALATKYRFEQVAG-SNDAVRVGITLRPHDL-LVRPVARHHHHHH 467
Score = 121 bits (306), Expect = 2e-30
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 9/157 (5%)
Query: 45 LASKIPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDL 104
L +P++G+G +P M + + + + +G + V+ PE
Sbjct: 21 LREPPVAGGGVPLLGHGWRLARDPLAFMSQ----LRDHGDVVRIKLGPKTVYAVTNPELT 76
Query: 105 QIVLNNTKTLEKGPAYKFFLNTVGT-GLFSAPVEKWRRNRKVITPAFNMNLMTHFIPVFR 163
+ N GP ++ +G G+ +A RR R+ I PAF ++ + + P+
Sbjct: 77 GALALNPDYHIAGPLWESLEGLLGKEGVATANGPLHRRQRRTIQPAFRLDAIPAYGPIME 136
Query: 164 EKNAILMNRLKKFENTGKTFDLWEYISGAALDIICHS 200
E+ L R + GKT D A+ +
Sbjct: 137 EEAHALTERWQP----GKTVDATSESFRVAVRVAARC 169
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 261 bits (670), Expect = 3e-83
Identities = 85/437 (19%), Positives = 161/437 (36%), Gaps = 74/437 (16%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLN 109
PG LP +G L F+ N D + +++ FK + + I +S + +
Sbjct: 15 PGDFGLPWLGETLNFL-NDGDFG---KKRQQQFGPIFKTRLFGKNVIFISGALANRFLFT 70
Query: 110 NTKTLEKGPAYKFFLNTVG-TGLFSAPVEKWRRNRKVITPAFNMNLMTHFIPVFREKNAI 168
+ + +G L + E R RK++ AF + ++P + I
Sbjct: 71 KEQETFQATWPLSTRILLGPNALATQMGEIHRSRRKILYQAFLPRTLDSYLPKM---DGI 127
Query: 169 LMNRLKKFENTGKTFDLWEYISGAALDIICHS---------------------------- 200
+ L+++ + + D+
Sbjct: 128 VQGYLEQWGK-ANEVIWYPQLRRMTFDVAATLFMGEKVSQNPQLFPWFETYIQGLFSLPI 186
Query: 201 --------------KKL-KVFLDILLELKDAGAHFTDA-----DIRDE------------ 228
L I+ + DA RD+
Sbjct: 187 PLPNTLFGKSQRARALLLAELEKIIKARQQQPPSEEDALGILLAARDDNNQPLSLPELKD 246
Query: 229 -VITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEMEDLAKLTYM 287
++ ++ G ET LLG H +I+++V E + + + E L K+ Y+
Sbjct: 247 QILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQL--SQELTAETLKKMPYL 304
Query: 288 EQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYYKNPKQFNP 347
+QVL+E LRL P R++ ++ Q + PK V TH + Y +P++F+P
Sbjct: 305 DQVLQEVLRLIPPVGGGFRELIQDCQFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDP 364
Query: 348 DNFTPEAIAAR-HKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKFEVQTDVKMEDIK 406
+ FTP+ A ++ + F GG R C+G ++A L MK+ + L+++F+ + ++++
Sbjct: 365 ERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARLEMKLFATRLIQQFDWTL-LPGQNLE 423
Query: 407 LKVDLLMRSVHGYPVRL 423
L V R V+L
Sbjct: 424 LVVTPSPRPKDNLRVKL 440
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 261 bits (668), Expect = 1e-82
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 5/228 (2%)
Query: 206 FLDILLELKD-AGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDE 264
L LL+ G TD ++ +I +++ G TS+ T+ + L +Q K Y E
Sbjct: 233 ILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLE 292
Query: 265 IYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCN 324
++ G++ P+ + L L +++ +KETLRL P + +R +A YT+P
Sbjct: 293 QKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQ 352
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
V + P + + FNPD + + A+ K++++ F G CIG +A + +K
Sbjct: 353 VCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIK 412
Query: 385 VLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPSH 432
+ ST+LR +E + ++ + +R RR +H
Sbjct: 413 TIWSTMLRLYEFDLIDG-YFPTVNYTTMIHTPENPVIRYK---RRSTH 456
Score = 99.7 bits (249), Expect = 6e-23
Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 14/163 (8%)
Query: 45 LASKIPGPP----ALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSK 100
L + + PP +P +G+ +AF +P + + EKY F F + + + +
Sbjct: 6 LPAGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENA---YEKYGPVFSFTMVGKTFTYLLG 62
Query: 101 PEDLQIVLNNT-KTLEKGPAYKFFLNTV-GTGL-FSAPVEKWRRNRKVITPAFNMNLMTH 157
+ ++ N+ + L Y V G G+ + P + +K++ N+
Sbjct: 63 SDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQ 122
Query: 158 FIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIICHS 200
+ + ++ + +++E +S + H
Sbjct: 123 HVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTASHC 161
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 243 bits (622), Expect = 8e-76
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 206 FLDILLELKDA--GAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYD 263
L +L KD G D +IR ++IT +I G ET++ F L L +P + K +
Sbjct: 233 LLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAE 292
Query: 264 EIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIA-SYTLPKD 322
E + D + + +L Y+ VL E LRL+P P F E+ + Y L K
Sbjct: 293 EAARVLV--DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKG 350
Query: 323 CNVIIPPVNTHHNEKYYK-NPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
+++ H ++ + + ++F P+ F E +A +++F F G R CIG ++A+
Sbjct: 351 DELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAIPQHAFKPFGNGQRACIGQQFALH 408
Query: 382 SMKVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPS 431
+++ +L+ F+ D ++ +K L ++ G+ V+ ++
Sbjct: 409 EATLVLGMMLKHFDF-EDHTNYELDIKETLTLKP-EGFVVKAKSKKIPLG 456
Score = 123 bits (310), Expect = 5e-31
Identities = 24/156 (15%), Positives = 61/156 (39%), Gaps = 6/156 (3%)
Query: 47 SKIPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQI 106
++P P + N N + + + ++ FKF + +S ++
Sbjct: 3 KEMPQPKTFGELKNLPLL--NTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKE 60
Query: 107 VLNNTK-TLEKGPAYKFFLNTVGTGLFSAPV--EKWRRNRKVITPAFNMNLMTHFIPVFR 163
+ ++ A KF + G GLF++ + W++ ++ P+F+ M + +
Sbjct: 61 ACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMV 120
Query: 164 EKNAILMNRLKKFENTGKTFDLWEYISGAALDIICH 199
+ L+ + ++ + ++ E ++ LD I
Sbjct: 121 DIAVQLVQKWERLNA-DEHIEVPEDMTRLTLDTIGL 155
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 234 bits (598), Expect = 2e-72
Identities = 45/225 (20%), Positives = 102/225 (45%), Gaps = 13/225 (5%)
Query: 206 FLDILLELKDA-GAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEI--QDKVY 262
L LL G + ++ ++ M G TS++T + + L + + +
Sbjct: 234 LLSGLLSAVYRDGTPMSLHEVCGMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALR 293
Query: 263 DEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKD 322
EI + + ++ + E+ +E++R P + +RKV ++++ SY +PK
Sbjct: 294 KEIEEFPAQLNY---NNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVGSYVVPKG 350
Query: 323 CNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
+ P+ +HH+E+ + P++++P+ + + +FI F G CIG K+ +L
Sbjct: 351 DIIACSPLLSHHDEEAFPEPRRWDPERDE------KVEGAFIGFGAGVHKCIGQKFGLLQ 404
Query: 383 MKVLISTLLRKFEVQ-TDVKMEDIKLKVDLLMRSVHGYPVRLVTR 426
+K +++T R ++ Q ++ D ++ + V+ + R
Sbjct: 405 VKTILATAFRSYDFQLLRDEVPDPDYHTMVVGPTASQCRVKYIRR 449
Score = 110 bits (278), Expect = 8e-27
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 8/154 (5%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAP-FKFWVGHELYIIVSKPEDLQIVL 108
P +PI+G+ + F +P M + + ++ F + + IV P +
Sbjct: 7 VYPVTVPILGHIIQFGKSPLGFMQEC---KRQLKSGIFTINIVGKRVTIVGDPHEHSRFF 63
Query: 109 NN-TKTLEKGPAYKFFLNTVGTGL-FSAPVEKWRRNRKVITPAFNMNLMTHFIPVFREKN 166
+ L Y F + G G+ ++AP + R + + +F+P + +
Sbjct: 64 LPRNEVLSPREVYSFMVPVFGEGVAYAAPYPRMREQLNFLAEELTIAKFQNFVPAIQHEV 123
Query: 167 AILMNRLKKFENTGKTFDLWEYISGAALDIICHS 200
M ++ +L E S ++ C
Sbjct: 124 RKFM--AANWDKDEGEINLLEDCSTMIINTACQC 155
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 223 bits (570), Expect = 6e-68
Identities = 51/457 (11%), Positives = 127/457 (27%), Gaps = 91/457 (19%)
Query: 48 KIPGPPALPIVGNGLAFIGN--PEDVMGKIEMFMEKY--------EAPFKFWVGHELYII 97
IPG LPIVG + + + KY P F + +
Sbjct: 29 NIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVA 88
Query: 98 VSKPEDLQIVLNNTKTLEKGPAYKFFLNTVG------TGLFSAPVEKWRRNRKVITPAFN 151
+ + ++ + K +K ++ + + P E K +
Sbjct: 89 LLDGKSFPVLFDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLL 148
Query: 152 MNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIIC------------- 198
+ P F+ + L + L+K + D G A + +
Sbjct: 149 KSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKL 208
Query: 199 ---------------------------------HSKKLKV------FLDILLELKDAGAH 219
H+ L + + ++
Sbjct: 209 KADAPGLITKWVLFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGE 268
Query: 220 FTDA------DIRDEVITMMIGGSETSALTNCFCLTLL-----GMHPEIQDKVYDEIYSI 268
+ ++ + + ++ +++ +EI S+
Sbjct: 269 ILVEADKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSV 328
Query: 269 FGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQI----ASYTLPKDCN 324
+ + M + K+ + V+ E LR P + +++ I A++ +
Sbjct: 329 IKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEM 388
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAF-------SGGARGCIGSK 377
+ + K + +F P+ F E ++ + + G + C G
Sbjct: 389 LYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKD 448
Query: 378 YAMLSMKVLISTLLRKFEVQT-DVKMEDIKLKVDLLM 413
+ +L ++ + + R+++ +V + V+
Sbjct: 449 FVVLVARLFVIEIFRRYDSFDIEVGTSPLGSSVNFSS 485
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 219 bits (560), Expect = 1e-66
Identities = 50/276 (18%), Positives = 116/276 (42%), Gaps = 16/276 (5%)
Query: 154 LMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIICHSKKL---KVFLDIL 210
+M + + + N + W+ I + I + + + D L
Sbjct: 220 MMVTPVELHKRLNTKVWQAHTL---------AWDTIFKSVKPCIDNRLQRYSQQPGADFL 270
Query: 211 LELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFG 270
++ H + ++ V + + ET+A + + L L +P+ Q ++ E+ S+
Sbjct: 271 CDIYQQD-HLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLP 329
Query: 271 DSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPV 330
D ++ EDL + Y++ LKE++RL P P R + + + Y LPK + +
Sbjct: 330 D-NQTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYALPKGTVLTLNTQ 388
Query: 331 NTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTL 390
+E +++ +F P+ + + + ++ + F G R CIG + A L + + + +
Sbjct: 389 VLGSSEDNFEDSHKFRPERWLQKEK-KINPFAHLPFGIGKRMCIGRRLAELQLHLALCWI 447
Query: 391 LRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTR 426
++K+++ E +++ ++ P+ R
Sbjct: 448 IQKYDIVAT-DNEPVEMLHLGILVPSRELPIAFRPR 482
Score = 95.8 bits (239), Expect = 1e-21
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 9/162 (5%)
Query: 47 SKIPGPPALPIVGNGLAFI--GNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDL 104
+ +PGP P++G+ L G + + + +KY F+ +G + + P L
Sbjct: 24 TDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLL 83
Query: 105 QIVLNNTKTLEKGPAYK-----FFLNTVGTGLFSAPVEKWRRNRKVITPAFNMN-LMTHF 158
+ + + K GL ++W+R R +
Sbjct: 84 EALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKL 143
Query: 159 IPVFREKNAILMNRLKKFENT-GKTFDLWEYISGAALDIICH 199
E A + R+ + + G+ DL+ ++ + + IC
Sbjct: 144 DKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICL 185
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 214 bits (546), Expect = 2e-64
Identities = 44/263 (16%), Positives = 99/263 (37%), Gaps = 9/263 (3%)
Query: 169 LMNRLKKFENTGKTFDLWEYISGAALDIICHSKKLKVFLDILLELKDAGAHFTDADIRDE 228
+ + Y ++ + IL L + DI+
Sbjct: 226 HVAAWDVIFSKAD-----IYTQNFYWELRQKGSVHHDYRGILYRLLGDS-KMSFEDIKAN 279
Query: 229 VITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEMEDLAKLTYME 288
V M+ GG +T+++T + L + + ++QD + E+ + + L + ++
Sbjct: 280 VTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQ-AQGDMATMLQLVPLLK 338
Query: 289 QVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYYKNPKQFNPD 348
+KETLRL P+ R + ++ + Y +P V + ++ +P+ F+P
Sbjct: 339 ASIKETLRLHPISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPT 398
Query: 349 NFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKFEVQTDVKMEDIKLK 408
+ + + + F G R C+G + A L M + + +L F V+ + D+
Sbjct: 399 RWLSKDK-NITYFRNLGFGWGVRQCLGRRIAELEMTIFLINMLENFRVEIQ-HLSDVGTT 456
Query: 409 VDLLMRSVHGYPVRLVTRDRRPS 431
+L++ ++ +
Sbjct: 457 FNLILMPEKPISFTFWPFNQEAT 479
Score = 82.8 bits (205), Expect = 3e-17
Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 17/166 (10%)
Query: 47 SKIPGPPALPIVGNGLAF-IGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQ 105
++IP P + + V +KY ++ +G+ + V PED+
Sbjct: 9 NEIPSPGDNGWLNLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVA 68
Query: 106 IVLNNTKTLEKGPAYKFFLNTVG--------TGLFSAPVEKWRRNRKVITP-AFNMNLMT 156
++ K+ P V G+ W+++R +
Sbjct: 69 LLF---KSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATK 125
Query: 157 HFIPVFREKNAILMNRLKK----FENTGKTFDLWEYISGAALDIIC 198
+F+P+ + ++ L + + + D+ + + A + I
Sbjct: 126 NFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESIT 171
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 207 bits (530), Expect = 7e-63
Identities = 50/448 (11%), Positives = 124/448 (27%), Gaps = 97/448 (21%)
Query: 45 LASKIPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAP-FKFWVGHELYIIVSKPED 103
+ +IP + N L + + + E+Y + F+ + + +I ++ E
Sbjct: 1 MNEQIPH---DKSLDNSLTLLKEGYLFI---KNRTERYNSDLFQARLLGKNFICMTGAEA 54
Query: 104 LQIVLNNTKTLEKGPAYKFFLNTV--GTGLFSAPVEKWRRNRKVITPAFNMNLMTHFIPV 161
++ + + + K ++ + + + +
Sbjct: 55 AKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAEL 114
Query: 162 FREKNAILMNRLKKFENTGKTFDLWEYISGAALDIICHS--------------------- 200
E+ + R +K L+E + C+
Sbjct: 115 MTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYWAGVPLKETEVKERADDFIDMV 170
Query: 201 -----------------KKLKVFLD-----------------ILLEL---KDAGAHFTDA 223
+ + +++ L E+ D+
Sbjct: 171 DAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDS 230
Query: 224 DIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEMEDLAK 283
+ + ++ + F L HP+ ++ +
Sbjct: 231 RMAAIELINVLRPIVAISYFLVFSALALHEHPKYKEWLRSG------------------N 272
Query: 284 LTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYYKNPK 343
E ++E R +P GP V ++ + K +V++ T+H+ + + +P
Sbjct: 273 SREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPD 332
Query: 344 QFNPDNFTPEAIAARHKYSFIAFSGG----ARGCIGSKYAMLSMKVLISTLLRKFEVQTD 399
+F P+ F + + I GG C G + MK + L+ + E
Sbjct: 333 EFRPERFAER---EENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVP 389
Query: 400 VKMEDIKLKVDLLMRSVHGYPVRLVTRD 427
+ L + G+ + + R
Sbjct: 390 EQSLHYSLAR-MPSLPESGFVMSGIRRK 416
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 206 bits (527), Expect = 1e-61
Identities = 57/232 (24%), Positives = 121/232 (52%), Gaps = 7/232 (3%)
Query: 206 FLDILLELKDAGAH-----FTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDK 260
FL ++++ +++ +D ++ + I + G ET++ F + L HP++Q K
Sbjct: 249 FLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQK 308
Query: 261 VYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLP 320
+ +EI ++ + P + + ++ Y++ V+ ETLRLFP+ R ++++I +P
Sbjct: 309 LQEEIDAVLPN-KAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIP 367
Query: 321 KDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAM 380
K V+IP H + KY+ P++F P+ F+ + Y + F G R CIG ++A+
Sbjct: 368 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 427
Query: 381 LSMKVLISTLLRKFEVQTDVKMED-IKLKVDLLMRSVHGYPVRLVTRDRRPS 431
++MK+ + +L+ F + + + +KL + L++ +++ +RD S
Sbjct: 428 MNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESRDGTVS 479
Score = 52.2 bits (126), Expect = 2e-07
Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 25/171 (14%)
Query: 39 RQRLEYLASK-IPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYII 97
IPGP LP +GN L++ + +KY + F+ G + +
Sbjct: 5 THSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMEC---HKKYGKVWGFYDGQQPVLA 61
Query: 98 VSKPEDLQIVLNNTKTLEKGPAYKFFLN--------TVGTGLFSAPVEKWRRNRKVITPA 149
++ P+ ++ VL Y F N + + + A E+W+R R +++P
Sbjct: 62 ITDPDMIKTVLVKE-------CYSVFTNRRPFGPVGFMKSAISIAEDEEWKRLRSLLSPT 114
Query: 150 F---NMNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDII 197
F + M I + +L+ L++ TGK L + ++D+I
Sbjct: 115 FTSGKLKEMVPII---AQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVI 162
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 199 bits (508), Expect = 6e-59
Identities = 42/265 (15%), Positives = 96/265 (36%), Gaps = 30/265 (11%)
Query: 195 DIICHSKKLKVFLDILLELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMH 254
+ + + + + + + L D + F D + + ++ + + L + +
Sbjct: 228 ENLQKRESISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRN 287
Query: 255 PEIQDKVYDEIYSIFGDS---------DRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFL 305
PE +E+ ++ + +L L ++ ++KE+LRL
Sbjct: 288 PEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI- 346
Query: 306 RKVTEEIQI----ASYTLPKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARH-- 359
R E+ + SY + KD + + P H + + Y +P F D + E +
Sbjct: 347 RTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTF 406
Query: 360 -------KYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKFE---VQTDVKMEDIKL-- 407
KY ++ F GA C G +A+ +K + +L FE ++ K +
Sbjct: 407 YCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSR 466
Query: 408 KVDLLMRSVHGYPVRLVTRDRRPSH 432
++ ++ + + + H
Sbjct: 467 AGLGILPPLNDIEFKY--KFKHHHH 489
Score = 75.1 bits (185), Expect = 8e-15
Identities = 20/198 (10%), Positives = 48/198 (24%), Gaps = 18/198 (9%)
Query: 36 KRKRQRLEYLASKIPGPP-ALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHEL 94
+R++ P +P +G L F NP + + + K+ F + +
Sbjct: 8 RRRQTGE------PPLENGLIPYLGCALQFGANPLEFLRANQ---RKHGHVFTCKLMGKY 58
Query: 95 YIIVSKPEDLQIVLNNTKTLEKGPAYKFFLNTV--GTGLFSAPVEKWRRNRKVITPAFNM 152
++ P VL + K + + +
Sbjct: 59 VHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFIKTLQG 118
Query: 153 NLMTHFIPVFREKNAILMNRLKKFE---NTGKTFDLWEYISGAALDIICH---SKKLKVF 206
+ + E +M T ++ + + + L
Sbjct: 119 HALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTRR 178
Query: 207 LDILLELKDAGAHFTDAD 224
+ + +F D
Sbjct: 179 DTQKAHILNNLDNFKQFD 196
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 195 bits (497), Expect = 4e-58
Identities = 51/441 (11%), Positives = 117/441 (26%), Gaps = 95/441 (21%)
Query: 49 IPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAP-FKFWVGHELYIIVSKPEDLQIV 107
+P P L+ + +P + + ++ A F+ + + + +I
Sbjct: 1 MPKTPHTKGPDETLSLLADPYRFISRQ---CQRLGANAFESRFLLKKTNCLKGAKAAEIF 57
Query: 108 LNNTKTLEKGPAYKFFLNTV--GTGLFSAPVEKWRRNRKVITPAFNMNLMTHFIPVFREK 165
+ T+ +G T+ G+ E R +++ + +F
Sbjct: 58 YDTTRFEREGAMPVAIQKTLLGQGGVQGLDGETHRHRKQMFMGLMTPERVRALAQLFEA- 116
Query: 166 NAILMNRLKKFENTGKTFDLWEYISGAALDIICH-----------SKKLKVFLDILLELK 214
+ + ++ + +C + +
Sbjct: 117 --EWRRAVPGWTR-KGEIVFYDELHEPLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAG 173
Query: 215 DAG----------------------------------------AHFTDAD---IRDEVI- 230
A A D + V
Sbjct: 174 SASPRHLWSRLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAA 233
Query: 231 ---TMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEMEDLAKLTYM 287
++ + A+ F L I+ + + Y
Sbjct: 234 VELVNVLRPTVAIAVYITFVAHALQTCSGIRAA-------------------LVQQPDYA 274
Query: 288 EQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYYKNPKQFNP 347
E ++E R +P P + + +++ + P+ V++ ++H+ + +P++F P
Sbjct: 275 ELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRP 334
Query: 348 DNFTPEAIAARHKYSFIAFSGG----ARGCIGSKYAMLSMKVLISTLLRKFEVQTDVKME 403
+ F ++FI GG C G + MKV L+ +
Sbjct: 335 ERFRAW---DEDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRYDVPDQDL 391
Query: 404 DIKLKVDLLMRSVHGYPVRLV 424
I L G+ +R V
Sbjct: 392 SIDF-ARLPALPKSGFVMRNV 411
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 194 bits (495), Expect = 6e-57
Identities = 54/308 (17%), Positives = 111/308 (36%), Gaps = 34/308 (11%)
Query: 151 NMNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIICHSKKLKVFLDIL 210
+ +P + L K + K+ LW+ +S A + +L+
Sbjct: 196 TFRQLDRLLPKLARGS--LSVGDKDHMCSVKSR-LWKLLSPA---RLARRAHRSKWLESY 249
Query: 211 LELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFG 270
L + ++ ++ + + L L +PE V E+ SI
Sbjct: 250 LLHLE-EMGVSEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELESILW 308
Query: 271 DSDRP------VEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIA-----SYTL 319
+++P + + L ++ VL E+LRL P R+V ++ + + L
Sbjct: 309 QAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAA-PFITREVVVDLAMPMADGREFNL 367
Query: 320 PKDCNVIIPP-VNTHHNEKYYKNPKQFNPDNFTPE---------AIAARHKYSFIAFSGG 369
+ +++ P ++ + + Y +P+ F + F R K + + G
Sbjct: 368 RRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAG 427
Query: 370 ARGCIGSKYAMLSMKVLISTLLRKFEVQ-----TDVKMEDIKLKVDLLMRSVHGYPVRLV 424
C+G YA+ S+K + +L +++ ++ D+ LM+ H PVR
Sbjct: 428 HNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQPEHDVPVRYR 487
Query: 425 TRDRRPSH 432
R H
Sbjct: 488 IRPHHHHH 495
Score = 67.1 bits (164), Expect = 3e-12
Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 21/183 (11%)
Query: 25 VTTLVAYAVNFKRKRQRLEYLASKIPGPP-ALPIVGNGLAFIGNPEDVMGKIEMFMEKYE 83
+ + ++ +R R+ E P ++P +G L F + E
Sbjct: 1 MAKKTSSLLSRRRTRRPGE-----PPLDLGSIPWLGYALDFGKDA------ASFLTRMKE 49
Query: 84 AP---FKFWVGHELYIIVSKPEDLQIVLNNTKT-LEKGPAYKFFLNTV-GTGL-FSAPVE 137
F VG ++ P V+ +T L+ F + + L +P +
Sbjct: 50 KHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERIFDVQLPHYSPSD 109
Query: 138 KWRRNRKVITPAFNMNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDII 197
+ R + + L ++ +A+L+ + + L ++ L
Sbjct: 110 EKARMKLTLLHRE---LQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAG 166
Query: 198 CHS 200
+
Sbjct: 167 YLT 169
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 188 bits (479), Expect = 6e-55
Identities = 44/281 (15%), Positives = 97/281 (34%), Gaps = 33/281 (11%)
Query: 154 LMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIICHSKKLKVFLDILLEL 213
+ +P F ++ + RL F L++Y A ++ ++KL V
Sbjct: 209 TLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAEKLGVP------- 261
Query: 214 KDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGM-HPEIQDKVYDEIYSIFGD- 271
D + + + + + L +G+ + ++ +EI
Sbjct: 262 -------KDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSY 314
Query: 272 SDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQI----ASYTLPKDCNVII 327
D V +E + ++ + V+ E+LR+ P P K I A++ + K +
Sbjct: 315 GDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFG 374
Query: 328 PPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGG---------ARGCIGSKY 378
+ K + P+++ PD F + ++ +S G + C G +
Sbjct: 375 YQPFATKDPKVFDRPEEYVPDRFVGD---GEALLKYVWWSNGPETESPTVENKQCAGKDF 431
Query: 379 AMLSMKVLISTLLRKFEVQTDVKMED-IKLKVDLLMRSVHG 418
+L ++ + L R+++ E + V L
Sbjct: 432 VVLITRLFVIELFRRYDSFEIELGESPLGAAVTLTFLKRAS 472
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 27/173 (15%)
Query: 48 KIPGPPALPIVGN---GLAFIGNPEDVMGKIEMF----MEKYEAP-FK-------FWVGH 92
+IPG +P L + G + + M+KY++ F+ F +
Sbjct: 10 EIPGSYGIPFFQPIKDRLEYFYGT----GGRDEYFRSRMQKYQSTVFRANMPPGPFVSSN 65
Query: 93 ELYIIVSKPEDLQIVLNNTKTLEKG-------PAYKFFLNTVGTGLFSAPVEKWRRNRKV 145
I++ + I+ + +K +K P+ K + + + +
Sbjct: 66 PKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNL 125
Query: 146 ITPAFNMNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIIC 198
+ + IP F L L+ + AA +
Sbjct: 126 LFFMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLG 177
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 183 bits (466), Expect = 7e-53
Identities = 74/493 (15%), Positives = 152/493 (30%), Gaps = 104/493 (21%)
Query: 25 VTTLVAYAVNFKRKRQRLEYLASKIPGPP-ALPIVGNGLAFIGNPEDVMGKIEMFMEKYE 83
+ + + +R R+R E P +P +G+ L F + + +++ EK+
Sbjct: 1 MAKKTSSVLYGRRTRRRNE-----PPLDKGMIPWLGHALEFGKDAAKFLTRMK---EKHG 52
Query: 84 APFKFWVGHELYIIVSKPEDLQIVLNNTKTLEKGPAYKFFLNTVGTGLFSAPVEKWRRNR 143
F ++ VL++ +L++ + + + + + + + R
Sbjct: 53 DIFTVRAAGLYITVLLDSNCYDAVLSDVASLDQTSYAQVLMKRIFNMILPSHNPESEKKR 112
Query: 144 KVITPAFNMNLMTHFIPVFREKNAILMNRLKKFENTGKTF-------------------- 183
+ F +T + +LM + T +
Sbjct: 113 AEMH--FQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTV 170
Query: 184 ----------------DLWEYISG----AALDIICHSKKL---------KVFLDILLELK 214
+ + A + K++ K L+ K
Sbjct: 171 FGAENNNSAALTQIYEEFRRFDKLLPKLARTTVNKEEKQIASAAREKLWKWLTPSGLDRK 230
Query: 215 DAGAHFTDA-------------DIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKV 261
+ + R ++ + + + + L HPE V
Sbjct: 231 PREQSWLGSYVKQLQDEGIDAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAV 290
Query: 262 YDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIA-----S 316
+EI E + VL ETLRL R VT++ +I
Sbjct: 291 REEI----QGGKHLRLEERQKNTPVFDSVLWETLRLTAAAL-ITRDVTQDKKICLSNGQE 345
Query: 317 YTLPKDCNVIIPP-VNTHHNEKYYKNPKQFNPDNFTPEAIAA---------RHKYSFIAF 366
Y L + + + P ++ + + ++ P+ F D F R KY + +
Sbjct: 346 YHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPW 405
Query: 367 SGGARGCIGSKYAMLSMKVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHG-------Y 419
C G +A+ ++K L+ T+L +F DV++ D V L+ S +G
Sbjct: 406 GTEDNLCPGRHFAVHAIKELVFTILTRF----DVELCDKNATVPLVDPSRYGFGILQPAG 461
Query: 420 PVRLVTRDRRPSH 432
+ + R R H
Sbjct: 462 DLEIRYRIRFHHH 474
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 135 bits (343), Expect = 2e-35
Identities = 96/513 (18%), Positives = 172/513 (33%), Gaps = 127/513 (24%)
Query: 19 IIFYVFVTTLVAYAVNFKRKRQRLEYLASKIPGPPALPIVGNGLAFIG-NPEDVMGKIEM 77
++ + L A + K+ P+V L + N +
Sbjct: 1 MVLAGLLLLLTLLAGAHLLWGRW------KLRNLHLPPLVPGFLHLLQPNLPIHLLS--- 51
Query: 78 FMEKYEAPFKFWVGHELYIIVSKPEDLQIVLNNTKT-----LEKG------PAYKFF--L 124
+K ++ +G + +V VLN+ +T + K P + +
Sbjct: 52 LTQKLGPVYRLRLGLQE--VV--------VLNSKRTIEEAMIRKWVDFAGRPQIPSYKLV 101
Query: 125 NTVGTGLFSAPV-EKWRRNRKVITPAFNM----NL-------MTHFIPVFREKNA----- 167
+ + W+ ++K+ A + ++ F R +
Sbjct: 102 SQRCQDISLGDYSLLWKAHKKLTRSALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTI 161
Query: 168 -ILMNRL-----------KKFENTGKTF--------DLWEYISGAALDII--------CH 199
+ L K + F W++ S LD++
Sbjct: 162 QKEFSLLTCSIICYLTFGNKEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPNPG 221
Query: 200 SKKLKV---------------------------FLDILL------ELKDAGAHFTDADIR 226
+LK D +L +++ + +
Sbjct: 222 LWRLKQAIENRDHMVEKQLRRHKESMVAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVH 281
Query: 227 DEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFG--DSDRPVEMEDLAKL 284
V+ + IGG+ET+A T + + L HPEIQ ++ +E+ G S V +D A+L
Sbjct: 282 MSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARL 341
Query: 285 TYMEQVLKETLRLFPVGPVFL-RKVTEEIQIASYTLPKDCNVIIPPVNT---HHNEKYYK 340
+ + E LRL PV P+ L + T I Y +P+ VI N H +E ++
Sbjct: 342 PLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGMVVIP---NLQGAHLDETVWE 398
Query: 341 NPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKFEVQTDV 400
P +F PD F + S +AF GAR C+G A L + V+++ LL+ F +
Sbjct: 399 QPHEFRPDRF----LEPGANPSALAFGCGARVCLGESLARLELFVVLARLLQAFTLLPPP 454
Query: 401 KMEDIKLKVDL---LMRSVHGYPVRLVTRDRRP 430
L+ D + V + VRL R
Sbjct: 455 VGALPSLQPDPYCGVNLKVQPFQVRLQPRGVEA 487
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 133 bits (338), Expect = 1e-34
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 8/229 (3%)
Query: 206 FLDILL-----ELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDK 260
+ L + + F D ++R V + G T++ T + L L+ +HP++Q +
Sbjct: 249 LTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRR 308
Query: 261 VYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFL-RKVTEEIQIASYTL 319
V EI + G R EM D A + Y V+ E R + P+ + + +I++ + +
Sbjct: 309 VQQEIDDVIG-QVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRI 367
Query: 320 PKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYA 379
PK +I + +E ++ P +F+P++F +F+ FS G R C+G A
Sbjct: 368 PKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLA 427
Query: 380 MLSMKVLISTLLRKFEVQTDVKMEDIKLK-VDLLMRSVHGYPVRLVTRD 427
+ + + ++LL+ F V + S Y + V R
Sbjct: 428 RMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPRH 476
Score = 36.8 bits (86), Expect = 0.013
Identities = 26/180 (14%), Positives = 45/180 (25%), Gaps = 58/180 (32%)
Query: 50 PGPPALPIVGNGLAF-IGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVL 108
PGP LP +GN L N + ++ F + + VL
Sbjct: 13 PGPLPLPGLGNLLHVDFQNTPYCFDQ---LRRRFGDVFSLQLAWTPVV----------VL 59
Query: 109 NNTKTL------------EKGPAYKFFLNTVGTG----LFSAPVEKWRRNRKVITPAFNM 152
N + ++ P + G + WR R+
Sbjct: 60 NGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFS------ 113
Query: 153 NLMTHFIPVFRE----KNAI----------LMNRLKKFENTGKTFDLWEYISGAALDIIC 198
+ T R K ++ L G+ F + A ++I
Sbjct: 114 -VST-----LRNLGLGKKSLEQWVTEEAACLCAAFANHS--GRPFRPNGLLDKAVSNVIA 165
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 132 bits (335), Expect = 3e-34
Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 9/234 (3%)
Query: 206 FLDILL-----ELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDK 260
F+D L D + F+ ++ V ++I G+ET+ + + + ++P IQ +
Sbjct: 250 FVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQ 309
Query: 261 VYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFL-RKVTEEIQIASYTL 319
V EI I G + +D K+ Y E VL E LR + P+ + +E+ + Y++
Sbjct: 310 VQKEIDLIMG-PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSI 368
Query: 320 PKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYA 379
PK VI + H +EKY+++P+ F+P+ F + K + + FS G R C+G A
Sbjct: 369 PKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLA 428
Query: 380 MLSMKVLISTLLRKFEVQTDVKME-DIKLKVDLLMRSVHGYPVRLVTRDRRPSH 432
+ M + + LL++F + ++ D+K ++ + ++ Y + R H
Sbjct: 429 RMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQ-PQPYLICAERRHHHHHH 481
Score = 44.5 bits (106), Expect = 4e-05
Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 23/162 (14%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQ--IV 107
PGPP LP +GN + + E + + Y F +G ++++ + ++ +V
Sbjct: 15 PGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLV 74
Query: 108 LNNTKTLEKGPAYKFFLNTVGTGLFSAPV-EKWRRNRKVITPAFNMNLMTHF-------- 158
+ ++ F T GL ++ W +R+ +N +F
Sbjct: 75 HQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDHRR-----LAVNSFRYFGYGQKSFE 129
Query: 159 --IPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIIC 198
I E+ + ++ ++ G+ FD + I+ A +I
Sbjct: 130 SKI---LEETKFFNDAIETYK--GRPFDFKQLITNAVSNITN 166
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 129 bits (327), Expect = 3e-33
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Query: 214 KDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSD 273
K+ F ++ + + IGG+ET + T + LL HPE++ KV++EI + G +
Sbjct: 258 KNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIG-KN 316
Query: 274 RPVEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTLPKDCNVIIPPVNT 332
R + ED AK+ YME V+ E R V P+ R+V ++ + + LPK V +
Sbjct: 317 RQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSV 376
Query: 333 HHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLR 392
+ ++ NP+ FNP +F E + +F+ FS G R C G A + + + +T+++
Sbjct: 377 LRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQ 436
Query: 393 KFEVQT--DVKMEDIKLKVDLLMRSVHGYPVRLVTRD 427
F +++ K D+ K Y + + R
Sbjct: 437 NFRLKSSQSPKDIDVSPKHVGFATIPRNYTMSFLPRH 473
Score = 42.5 bits (101), Expect = 2e-04
Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 54/176 (30%)
Query: 50 PGPPALPIVGNGLAF-IGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVL 108
PGP LP +GN L + + K E+Y F +G +VL
Sbjct: 13 PGPTPLPFIGNYLQLNTEQMYNSLMK---ISERYGPVFTIHLGPRRV----------VVL 59
Query: 109 NNTKTL------------EKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFNMNLMT 156
+ +G F G G+ + E+ ++ R+ + T
Sbjct: 60 CGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFS-------IAT 112
Query: 157 HFIPVFRE----KNAI----------LMNRLKKFENTGKTFDLWEYISGAALDIIC 198
R+ K I L++ L+ G D ++S ++I
Sbjct: 113 -----LRDFGVGKRGIEERIQEEAGFLIDALRGTG--GANIDPTFFLSRTVSNVIS 161
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 129 bits (326), Expect = 4e-33
Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 18/236 (7%)
Query: 206 FLDILLELKDAGAH-------FTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQ 258
+ + + A +D I + + G ET+ + L L +P+++
Sbjct: 248 LMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVK 307
Query: 259 DKVYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFL-RKVTEEIQIASY 317
K+Y+EI G R + D +L +E ++E LRL PV P+ + K + I +
Sbjct: 308 KKLYEEIDQNVG-FSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEF 366
Query: 318 TLPKDCNVIIPPVNT---HHNEKYYKNPKQFNPDNF-TPE-AIAARHKYSFIAFSGGARG 372
+ K VII N HHNEK + P QF P+ F P S++ F G R
Sbjct: 367 AVDKGTEVII---NLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRS 423
Query: 373 CIGSKYAMLSMKVLISTLLRKFEVQTDVKMEDIKLKVDL-LMRSVHGYPVRLVTRD 427
CIG A + ++++ LL++F+++ + L+ ++ + + V++ R
Sbjct: 424 CIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQ 479
Score = 37.1 bits (87), Expect = 0.010
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 47/174 (27%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLN 109
+LP+VG+ L F+ + +KY + +G + + ++
Sbjct: 11 KSLLSLPLVGS-LPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTV----------IVG 59
Query: 110 NTKT-----LEKG---------PAYKFFLNTVGTGLFSAPV-EKWRRNRKVITPAFNMNL 154
+ + ++KG N G+ A W+ +R+ M
Sbjct: 60 HHQLAKEVLIKKGKDFSGRPQMATLDIASNN-RKGIAFADSGAHWQLHRR-----LAMAT 113
Query: 155 MTHF----------IPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDIIC 198
F I ++ + L + L G++ D+ + A ++I
Sbjct: 114 FALFKDGDQKLEKII---CQEISTLCDMLATHN--GQSIDISFPVFVAVTNVIS 162
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 129 bits (326), Expect = 5e-33
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 10/201 (4%)
Query: 206 FLDILL-----ELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDK 260
L + +G I + V + G +T + L L PEIQ K
Sbjct: 259 ITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRK 318
Query: 261 VYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFL-RKVTEEIQIASYTL 319
+ E+ ++ G +R + D +L Y+E + ET R P + T + + + +
Sbjct: 319 IQKELDTVIG-RERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYI 377
Query: 320 PKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPE---AIAARHKYSFIAFSGGARGCIGS 376
PK C V + +H+ + +++P +F P+ F AI + F G R CIG
Sbjct: 378 PKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGE 437
Query: 377 KYAMLSMKVLISTLLRKFEVQ 397
A + + ++ LL++ E
Sbjct: 438 VLAKWEIFLFLAILLQQLEFS 458
Score = 39.1 bits (92), Expect = 0.003
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 40/186 (21%)
Query: 36 KRKRQRLEYLASKIPGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELY 95
R + L+ P P P++G+ L NP + + ++Y + +G
Sbjct: 9 PRVPKGLKSP----PEPWGWPLLGHVLTLGKNPHLALSR---MSQRYGDVLQIRIGSTP- 60
Query: 96 IIVSKPEDLQIVLNNTKTL------------EKGPAYKFFLNTVGTGL-FSAPV-EKWRR 141
++ VL+ T+ + Y L T G L FS W
Sbjct: 61 -VL--------VLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAA 111
Query: 142 NRKVITPAFNM-----NLMTHFIPVFREK----NAILMNRLKKFENTGKTFDLWEYISGA 192
R++ A N + + E L++RL++ FD + + +
Sbjct: 112 RRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVS 171
Query: 193 ALDIIC 198
++I
Sbjct: 172 VANVIG 177
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 128 bits (325), Expect = 6e-33
Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 206 FLDILL-----ELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDK 260
F+D L E + + FT + + + + G+ET++ T + L LL HPE+ K
Sbjct: 246 FIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAK 305
Query: 261 VYDEIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTL 319
V +EI + G +R M+D + + Y + V+ E R + P VT +I+ +Y +
Sbjct: 306 VQEEIERVIG-RNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLI 364
Query: 320 PKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYA 379
PK ++I + H+ K + NP+ F+P +F E + F+ FS G R C+G A
Sbjct: 365 PKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALA 424
Query: 380 MLSMKVLISTLLRKFEVQT--DVKMEDIKLKVDLLMRSVHGYPVRLVTRD 427
+ + + ++++L+ F +++ D K D V+ Y + +
Sbjct: 425 GMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIH 474
Score = 42.9 bits (102), Expect = 1e-04
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 52/175 (29%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLN 109
PGP LP++GN L +D+ + + Y F + G + +VL+
Sbjct: 14 PGPTPLPVIGNILQI--GIKDISKSLTNLSKVYGPVFTLYFGLKPI----------VVLH 61
Query: 110 NTKTL------------EKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFNMNLMTH 157
+ + +G G G+ + +KW+ R+ LMT
Sbjct: 62 GYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFS-------LMT- 113
Query: 158 FIPVFRE----KNAI----------LMNRLKKFENTGKTFDLWEYISGAALDIIC 198
R K +I L+ L+K + D + A ++IC
Sbjct: 114 ----LRNFGMGKRSIEDRVQEEARCLVEELRKTK--ASPCDPTFILGCAPCNVIC 162
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 128 bits (323), Expect = 1e-32
Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 4/220 (1%)
Query: 214 KDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSD 273
A +T I V + G+ET++ T + L +L +PEI++K+++EI + G
Sbjct: 257 HSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIG-PS 315
Query: 274 RPVEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTLPKDCNVIIPPVNT 332
R ++D ++ YM+ V+ E R + P + T + Y +PK V+ +
Sbjct: 316 RIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTVVVPTLDSV 375
Query: 333 HHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLR 392
++ + + +P++F P++F E ++ F FS G R C G A + + +L+ +L+
Sbjct: 376 LYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQ 435
Query: 393 KFEVQTDVKMEDIKLKVDL--LMRSVHGYPVRLVTRDRRP 430
F ++ V +DI L Y + ++ R
Sbjct: 436 HFNLKPLVDPKDIDLSPIHIGFGCIPPRYKLCVIPRSHHH 475
Score = 40.6 bits (96), Expect = 9e-04
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 55/176 (31%)
Query: 50 PGPPALPIVGNGLAF-IGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVL 108
PGP LPI+GN + N + +++ F +VG + +V+
Sbjct: 13 PGPFPLPIIGNLFQLELKNIPKSFTR---LAQRFGPVFTLYVGSQRM----------VVM 59
Query: 109 NNTKTL------------EKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFNMNLMT 156
+ K + +G F + G+ W+ R+ L T
Sbjct: 60 HGYKAVKEALLDYKDEFSGRGDLPAFHAHR-DRGIIFNNGPTWKDIRRFS-------LTT 111
Query: 157 HFIPVFRE----KNAI----------LMNRLKKFENTGKTFDLWEYISGAALDIIC 198
R K L+ L+K + G+ FD I A ++I
Sbjct: 112 -----LRNYGMGKQGNESRIQREAHFLLEALRKTQ--GQPFDPTFLIGCAPCNVIA 160
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 128 bits (324), Expect = 1e-32
Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 4/222 (1%)
Query: 212 ELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGD 271
+ GA ++ + + +T + + L L +P++Q +V E+ + G
Sbjct: 267 DSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVG- 325
Query: 272 SDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFL-RKVTEEIQIASYTLPKDCNVIIPPV 330
DR M D L Y+ L E +R PV + T + Y +PKD V +
Sbjct: 326 RDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQW 385
Query: 331 NTHHNEKYYKNPKQFNPDNFTPE--AIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLIS 388
+ +H+ + NP+ F+P F + I + FS G R CIG + + + + + IS
Sbjct: 386 SVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFIS 445
Query: 389 TLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRP 430
L + + + + L + V + R+
Sbjct: 446 ILAHQCDFRANPNEPAKMNFSYGLTIKPKSFKVNVTLRESME 487
Score = 44.5 bits (106), Expect = 5e-05
Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 42/173 (24%)
Query: 50 PGPPALPIVGNGLAFIGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVLN 109
PGP A P++GN A + +Y F+ +G IV VLN
Sbjct: 12 PGPFAWPLIGNAAAVGQAAHLSFAR---LARRYGDVFQIRLGSCP--IV--------VLN 58
Query: 110 NTKTL------------EKGPAYKFFLNTVGTGLFSAPV-EKWRRNRKVITPAFNMNLMT 156
+ + ++ F + + G + E W+ R+ ++M
Sbjct: 59 GERAIHQALVQQGSAFADRPSFASFRVVSGGRSMAFGHYSEHWKVQRR-----AAHSMMR 113
Query: 157 HFIPVFRE-KNAI----------LMNRLKKFENTGKTFDLWEYISGAALDIIC 198
+F + + L+ L + G D A +++
Sbjct: 114 NFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMS 166
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 126 bits (320), Expect = 2e-32
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 4/218 (1%)
Query: 214 KDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSD 273
D + F ++ V+++ G+ET++ T + L+ +P + ++V EI + G S
Sbjct: 258 SDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIG-SH 316
Query: 274 RPVEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTLPKDCNVIIPPVNT 332
RP ++D AK+ Y + V+ E RL + P VT++ Q Y +PK+ V +
Sbjct: 317 RPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSA 376
Query: 333 HHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLR 392
H+ +Y++ P FNP +F A + F+ FS G R C+G A + + +T+L+
Sbjct: 377 LHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQ 436
Query: 393 KFEVQTDVKMEDIKLK--VDLLMRSVHGYPVRLVTRDR 428
F + + V EDI L + Y +R + R
Sbjct: 437 NFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARHH 474
Score = 42.9 bits (102), Expect = 2e-04
Identities = 36/176 (20%), Positives = 54/176 (30%), Gaps = 54/176 (30%)
Query: 50 PGPPALPIVGNGLAF-IGNPEDVMGKIEMFMEKYEAPFKFWVGHELYIIVSKPEDLQIVL 108
PGP LP++GN L + EKY F ++G +VL
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLR---LREKYGDVFTVYLGSRPV----------VVL 59
Query: 109 NNTKTL------------EKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFNMNLMT 156
T + +G G G+ A E+WR R+ L T
Sbjct: 60 CGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFS-------LAT 112
Query: 157 HFIPVFRE----KNAI----------LMNRLKKFENTGKTFDLWEYISGAALDIIC 198
R+ K ++ L+ L+K + G D +IIC
Sbjct: 113 -----MRDFGMGKRSVEERIQEEARCLVEELRKSK--GALLDNTLLFHSITSNIIC 161
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 70.0 bits (172), Expect = 3e-13
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 37/221 (16%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
LD L+ + ++ + +++ G ET+ + LTL+ HPE
Sbjct: 215 LDELIARQLEEGDLDHDEVVMIALVLLVAGHETTVNAIAL-GALTLIQ-HPE-------- 264
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDC 323
+++ L + V++E LR V +R E+I++ T+
Sbjct: 265 ------------QIDVLLRDPGAVSGVVEELLRFTSVSDHIVRMAKEDIEVGGATIKAGD 312
Query: 324 NVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
V++ + + K + NPD F A H + F G C+G A
Sbjct: 313 AVLVSITLMNR------DAKAYENPDIFDARRNARHH----VGFGHGIHQCLGQNLARAE 362
Query: 383 MKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
+++ + L + ++ V ++++ +K + PV
Sbjct: 363 LEIALGGLFARIPGLRLAVPLDEVPIKAGHDAQGPIELPVV 403
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 69.2 bits (170), Expect = 6e-13
Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 57/237 (24%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYS 267
L++ + G H TDA+I + M+ G ET+ + N + L HPE Q
Sbjct: 217 LIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVN-AVVNLST-HPE-Q--------- 264
Query: 268 IFGDSDRPVEMEDLAKL----TYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
A + V++ETLR P V +R E++ + +P
Sbjct: 265 -------------RALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAG 311
Query: 323 CNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAI------AARHKYSFIAFSGGARGCIGS 376
+I+ + + P + RH I+F G C G+
Sbjct: 312 DALIVSYGALGRD------ERAHGPT---ADRFDLTRTSGNRH----ISFGHGPHVCPGA 358
Query: 377 KYAMLSMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPSH 432
+ + V + L +F + V +++ K + + PVRL H
Sbjct: 359 ALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRL-----AHHH 410
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 68.8 bits (169), Expect = 7e-13
Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 44/227 (19%)
Query: 215 DAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIFGDS 272
+ G + ++ + ++I G ET+ + N L LL HP+ Q
Sbjct: 216 EDGDRLSQEELVAMAMLLLIAGHETTVNLIGN-GVLALL-THPD-Q-------------- 258
Query: 273 DRPVEMEDLAKL----TYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKDCNVII 327
L + + ++E LR PV +R E++ + T+P V++
Sbjct: 259 --------RKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVML 310
Query: 328 PPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVL 386
+ + PD A+ + F G C+G++ A L +V
Sbjct: 311 GLAAANRD------ADWMPEPDRLDITRDASGG----VFFGHGIHFCLGAQLARLEGRVA 360
Query: 387 ISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPSH 432
I L E+ V ++++ + L+R + PV + R H
Sbjct: 361 IGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSALEHH 407
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 68.0 bits (167), Expect = 1e-12
Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 32/220 (14%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA-LTNCFCLTLLGMHPEIQDKVYDEI 265
+ L + + +D +++ G+ T + TL HP+
Sbjct: 212 ISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLA-QHPD--------- 261
Query: 266 YSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKDC 323
++ L A + Q ++E R R E++ I + +
Sbjct: 262 -----------QLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANE 310
Query: 324 NVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSM 383
+I + + +E+ ++NP +FN + + + F G CI A +
Sbjct: 311 GIIASNQSANRDEEVFENPDEFNMNR---KWPPQDP----LGFGFGDHRCIAEHLAKAEL 363
Query: 384 KVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
+ STL +KF +++ V + I + PV
Sbjct: 364 TTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVI 403
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 68.0 bits (167), Expect = 1e-12
Identities = 41/219 (18%), Positives = 71/219 (32%), Gaps = 35/219 (15%)
Query: 209 ILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIY 266
L A +H +D +T G ++ LT ++L+ P+
Sbjct: 207 SRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTT-ALISLIQ-RPQ---------- 254
Query: 267 SIFGDSDRPVEMEDL-AKLTYMEQVLKETLR-LFPVGPVFLRKVTEEIQIASYTLPKDCN 324
L K + ++E LR R T +IQ+ + K
Sbjct: 255 ----------LRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGEL 304
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
V++ + + +++ NP D P H +AF G C GS +
Sbjct: 305 VLVLLEGANFDPEHFPNPGSIELDRPNP----TSH----LAFGRGQHFCPGSALGRRHAQ 356
Query: 385 VLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
+ I LL+K V V ++ + + R PV
Sbjct: 357 IGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVL 395
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 67.3 bits (165), Expect = 2e-12
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 38/222 (17%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
+ L+ + T + + + G ET+ + L LL PE
Sbjct: 221 ISKLVTDHLVPGNVTTEQLLSTLGITINAGRETTTSMIAL-STLLLLD-RPE-------- 270
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
+L M + E LR+ + LR E+I+++ T+P D
Sbjct: 271 ------------LPAELRKDPDLMPAAVDELLRVLSVADSIPLRVAAEDIELSGRTVPAD 318
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
VI +H+ P+QF +P+ H +AF G C+G A L
Sbjct: 319 DGVIALLAGANHD------PEQFDDPERVDFHRTDNHH----VAFGYGVHQCVGQHLARL 368
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++V + TLLR+ ++ + + + +K D + V
Sbjct: 369 ELEVALETLLRRVPTLRLAGERDQVVVKHDSATFGLEELMVT 410
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 67.3 bits (165), Expect = 2e-12
Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 38/222 (17%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
+ + A + ++ G ET+A ++ + LL HPE
Sbjct: 217 FSRQIARQRQEGTLDHAGLVSLAFLLLTAGHETTANMISL-GVVGLLS-HPE-------- 266
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
++ + A ++E LR F V R TE+++I ++
Sbjct: 267 ------------QLTVVKANPGRTPMAVEELLRYFTIADGVTSRLATEDVEIGGVSIKAG 314
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
VI+ ++ + + P F +P E A H +AF G C+G A +
Sbjct: 315 EGVIVSMLSANWD------PAVFKDPAVLDVERGARHH----LAFGFGPHQCLGQNLARM 364
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++++ TL R+ ++ V MED+ K D ++ VH PV
Sbjct: 365 ELQIVFDTLFRRIPSLRLAVPMEDVPFKGDSVIYGVHELPVT 406
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 66.9 bits (164), Expect = 3e-12
Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 43/217 (19%)
Query: 215 DAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIFGDS 272
D + ++ + +++ G E S + LL HP+ Q
Sbjct: 221 DDDGRLSADELTSIALVLLLAGFEASVSLIGI-GTYLLL-THPD-Q-------------- 263
Query: 273 DRPVEMEDLAKL----TYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIP 328
LA + + + ++E LR R EE++I +P+ V++
Sbjct: 264 --------LALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVA 315
Query: 329 PVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLI 387
+ + PKQF +P F H ++F G C+G A L +V +
Sbjct: 316 NGAANRD------PKQFPDPHRFDVTRDTRGH----LSFGQGIHFCMGRPLAKLEGEVAL 365
Query: 388 STLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
L +F + + +D+ + LL+R + PVRL
Sbjct: 366 RALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRL 402
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 67.0 bits (164), Expect = 3e-12
Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 33/221 (14%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYS 267
L + G +D DI ++ +++ +E + L LL +PE + V
Sbjct: 244 LCTSEYEGMALSDKDILALILNVLLAATEPADKTLALMI-YHLL-NNPEQMNDVLA---- 297
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVII 327
DR L + + + ETLR P + R+++++ + + KD V
Sbjct: 298 -----DR-----SL-----VPRAIAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDTIVFC 342
Query: 328 PPVNTHHNEKYYKNPKQFNPD-----NFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
+ + + ++ P FN + + AARH +AF G C+G+ +A
Sbjct: 343 MIGAANRDPEAFEQPDVFNIHREDLGIKSAFSGAARH----LAFGSGIHNCVGTAFAKNE 398
Query: 383 MKVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
++++ + +L K ++ + + L R V
Sbjct: 399 IEIVANIVLDKMR-NIRLEEDFCYAESGLYTRGPVSLLVAF 438
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 66.9 bits (164), Expect = 3e-12
Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 39/223 (17%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
+ L++ +D ++ ++ D I +++ G E++ + + L+ PE
Sbjct: 226 VSALVQARDQQDSLSEQELLDLAIGLLVAGYESTTTQIADFV-YLLMT-RPE-------- 275
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLFP--VGPVFLRKVTEEIQIASYTLPK 321
L + + ++E R P VG F R E++ + T+
Sbjct: 276 ------------LRRQLLDRPELIPSAVEELTRWVPLGVGTAFPRYAVEDVTLRGVTIRA 323
Query: 322 DCNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAM 380
V+ + + QF + D + +H + F G C+G+ A
Sbjct: 324 GEPVLASTGAANRD------QAQFPDADRIDVDRTPNQH----LGFGHGVHHCLGAPLAR 373
Query: 381 LSMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
+ ++V + LL++ ++ + ++ +L+R PV
Sbjct: 374 VELQVALEVLLQRLPGIRLGIPETQLRWSEGMLLRGPLELPVV 416
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 66.5 bits (163), Expect = 4e-12
Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 38/222 (17%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
+ L+ + A ++ + ++I G ET+A + +TLL HPE
Sbjct: 216 VGALVADQLANGEIDREELISTAMLLLIAGHETTASMTSL-SVITLLD-HPE-------- 265
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
+ L A + + ++E LR R T +I++ +
Sbjct: 266 ------------QYAALRADRSLVPGAVEELLRYLAIADIAGGRVATADIEVEGQLIRAG 313
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
VI+ + + + +PD A H +AF G C+G A L
Sbjct: 314 EGVIVVNSIANRD------GTVYEDPDALDIHRSARHH----LAFGFGVHQCLGQNLARL 363
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++V+++ L+ + ++ V +E + L+ ++ V+ PV
Sbjct: 364 ELEVILNALMDRVPTLRLAVPVEQLVLRPGTTIQGVNELPVT 405
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 66.1 bits (162), Expect = 5e-12
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 38/222 (17%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
+ L+ +D D + + T++I +T+A + LL P+
Sbjct: 209 ISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGL-GTALLLD-SPD-------- 258
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
++ L + + ++E LR R T ++++ + K
Sbjct: 259 ------------QLALLREDPSLVGNAVEELLRYLTIGQFGGERVATRDVELGGVRIAKG 306
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
V+ + + P P+ F A H +AF GA CIG + A +
Sbjct: 307 EQVVAHVLAADFD------PAFVEEPERFDITRRPAPH----LAFGFGAHQCIGQQLARI 356
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++++ TL R+ ++ +E+++ + D++ VH PV
Sbjct: 357 ELQIVFETLFRRLPGLRLAKPVEELRFRHDMVFYGVHELPVT 398
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 66.1 bits (162), Expect = 6e-12
Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 44/218 (20%)
Query: 215 DAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIFGDS 272
+ G+ T ++ +++ G ET+ + N LL HP+ Q
Sbjct: 243 EDGSRLTSEELLGMAHILLVAGHETTVNLIAN-GMYALL-SHPD-Q-------------- 285
Query: 273 DRPVEMEDLAKL----TYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKDCNVII 327
LA L T ++ ++E LR PV R E + + +P V++
Sbjct: 286 --------LAALRADMTLLDGAVEEMLRYEGPVESATYRFPVEPVDLDGTVIPAGDTVLV 337
Query: 328 PPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVL 386
+ H P++F +P F A H +AF G CIG+ A L ++
Sbjct: 338 VLADAHRT------PERFPDPHRFDIRRDTAGH----LAFGHGIHFCIGAPLARLEARIA 387
Query: 387 ISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
+ LL + ++ DV ++ + ++R + P+R
Sbjct: 388 VRALLERCPDLALDVSPGELVWYPNPMIRGLKALPIRW 425
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 65.7 bits (161), Expect = 7e-12
Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 30/217 (13%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA-LTNCFCLTLLGMHPEIQDKVYDEI 265
+L G +T + R ++ GG +T A + L L HPE Q + +
Sbjct: 206 FSRILSEPVGGRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLA-RHPEDQRLLRERP 264
Query: 266 YSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNV 325
I + E +R +P R ++ T+ K V
Sbjct: 265 DLI----PAAAD---------------ELMRRYPT-VAVSRNAVADVDADGVTIRKGDLV 304
Query: 326 IIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKV 385
+P V + + ++ P++ F RH GA C+G+ A + + V
Sbjct: 305 YLPSVLHNLDPASFEAPEEVR---FDRGLAPIRH----TTMGVGAHRCVGAGLARMEVIV 357
Query: 386 LISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
+ L + + + + + P+
Sbjct: 358 FLREWLGGMP-EFALAPDKAVTMKGGNVGACTALPLV 393
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 65.4 bits (160), Expect = 9e-12
Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 53/232 (22%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYS 267
L+ ++++G T+ +I ++I G ET+ + N L +L P + +
Sbjct: 231 LVAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIAN-AALAMLR-TPGQWAALAAD--- 285
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVII 327
V++ET+R P + R +++ I ++T+PK +++
Sbjct: 286 -----------GSR-----ASAVIEETMRYDPPVQLVSRYAGDDLTIGTHTVPKGDTMLL 329
Query: 328 PPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVL 386
H +P PD F P+ RH + F GA C+G+ A L V
Sbjct: 330 LLAAAHR------DPTIVGAPDRFDPDRAQIRH----LGFGKGAHFCLGAPLARLEATVA 379
Query: 387 ISTLLRKFEVQTDVKMEDIKLKVDL------LMRSVHGYPVRLVTRDRRPSH 432
+ L +F + +L + +R + + + H
Sbjct: 380 LPALAARF--------PEARLSGEPEYKRNLTLRGMSTLSIAV-----HHHH 418
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 65.1 bits (159), Expect = 1e-11
Identities = 27/206 (13%), Positives = 66/206 (32%), Gaps = 37/206 (17%)
Query: 222 DADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEME 279
A D + + G+E +A + + L + P + +++ +D P
Sbjct: 209 AALPADPALRALFAGAEMTANTVVDAV-LAVS-AEPGLAERI----------ADDP---- 252
Query: 280 DLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKYY 339
++ + E LRL P + R T E+++ + + + V++ +
Sbjct: 253 AA-----AQRTVAEVLRLHPALHLERRTATAEVRLGEHVIGEGEEVVVVVAAANR----- 302
Query: 340 KNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKF-EVQ 397
+P+ F PD + A + + + + +
Sbjct: 303 -DPEVFAEPDRLDVDRPDADR----ALSAHRGHPGRLEELVTALATAALRAAAKALPGLT 357
Query: 398 TDVKMEDIKLKVDLLMRSVHGYPVRL 423
++ + ++R + PV L
Sbjct: 358 PSG--PVVRRRRSPVLRGTNRCPVEL 381
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 65.0 bits (159), Expect = 1e-11
Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 39/222 (17%)
Query: 208 DILLEL-KDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
++ + + G TD ++R + +M+ G + + + L +L HPE
Sbjct: 208 GMIGAVVAEYGDDATDEELRGFCVQVMLAGDDNISGMIGL-GVLAMLR-HPE-------- 257
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
+++ ++ + E +R R E++ +A + K
Sbjct: 258 ------------QIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKG 305
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
+VI + + P + D H +AF G C+G+ A L
Sbjct: 306 DSVICSLPAANRD------PALAPDVDRLDVTREPIPH----VAFGHGVHHCLGAALARL 355
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++ + + L R+F ++ +D + ++ + V
Sbjct: 356 ELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVA 397
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 65.0 bits (159), Expect = 1e-11
Identities = 34/218 (15%), Positives = 76/218 (34%), Gaps = 34/218 (15%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDE 264
+ +++ + G + + +++GG +T + L+ F + L HPE+ ++ +
Sbjct: 227 ITLMVNSEINGERIAHDKAQGLISLLLLGGLDTVVNFLSF-FMIHLA-RHPELVAELRSD 284
Query: 265 IYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCN 324
R E E R FPV R V ++ + L +
Sbjct: 285 ----PLKLMRGAE---------------EMFRRFPV-VSEARMVAKDQEYKGVFLKRGDM 324
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
+++P ++ P + + + H F GG C G A + +
Sbjct: 325 ILLPTALHGLDDAANPEPWKLDFSRR-----SISH----STFGGGPHRCAGMHLARMEVI 375
Query: 385 VLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
V + L++ + K + + ++ +V P+
Sbjct: 376 VTLEEWLKRIP-EFSFKEGETPIYHSGIVAAVENVPLV 412
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 64.6 bits (158), Expect = 2e-11
Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 41/222 (18%)
Query: 208 DILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEI 265
DI+ L T+ + + ++ G ++ A + N + L HP+
Sbjct: 216 DIISRL--NDGELTEDRVAHLAMGLLFAGLDSVASIMDN-GVVLLAA-HPD--------- 262
Query: 266 YSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLFPV--GPVFLRKVTEEIQIASYTLPKD 322
+ A M + ++E LR + R +E+++ T+
Sbjct: 263 -----------QRAAALADPDVMARAVEEVLRTARAGGSVLPPRYASEDMEFGGVTIRAG 311
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
V+ + + + F P+ F H + F G CIG+ A L
Sbjct: 312 DLVLFDLGLPNFD------ERAFTGPEEFDAARTPNPH----LTFGHGIWHCIGAPLARL 361
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++ + + L + E++ ++ +E ++LK L V
Sbjct: 362 ELRTMFTKLFTRLPELRPELPVEQLRLKEGQLSGGFAELRVV 403
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 64.2 bits (157), Expect = 2e-11
Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 36/213 (16%)
Query: 215 DAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDR 274
T ++ + + IGG + + LL PE
Sbjct: 222 VGRDEITLSEAVGLAVLLQIGGEAVTNNSGQMFHLLLS-RPE------------------ 262
Query: 275 PVEMEDL-AKLTYMEQVLKETLRLFPVGPV--FLRKVTEEIQIASYTLPKDCNVIIPPVN 331
E L ++ + + E LR P R E+++I + V + +
Sbjct: 263 --LAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLA 320
Query: 332 THHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTL 390
+ + P+ F +PD E H ++F G C G A L ++L+ +
Sbjct: 321 ANRD------PEVFPDPDRIDFERSPNPH----VSFGFGPHYCPGGMLARLESELLVDAV 370
Query: 391 LRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
L + ++ V ED+ K L+R PV
Sbjct: 371 LDRVPGLKLAVAPEDVPFKKGALIRGPEALPVT 403
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 63.8 bits (156), Expect = 3e-11
Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 40/231 (17%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
L +L+ +D G+ + I + ++ G ET+ L LTL H +
Sbjct: 226 LTLLVRARDTGSPLSVDGIVGTCVHLLTAGHETTTNFLAK-AVLTLRA-HRD-------- 275
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDC 323
+++L ++E +R P R E+I++ + +P+
Sbjct: 276 ------------VLDELRTTPESTPAAVEELMRYDPPVQAVTRWAYEDIRLGDHDIPRGS 323
Query: 324 NVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
V+ + + +P +F +PD A R + F G C+G+ A
Sbjct: 324 RVVALLGSANR------DPARFPDPDVLDVHRAAERQ----VGFGLGIHYCLGATLARAE 373
Query: 383 MKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRPSH 432
++ + LL + +++ D++ + L H
Sbjct: 374 AEIGLRALLDGIPALGRGA--HEVEYADDMVFHGPTRLLLDL-PDAALEHH 421
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 63.5 bits (155), Expect = 4e-11
Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 36/219 (16%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDE 264
+ +L ++ G D V +++GG +T + L + L HPE ++ E
Sbjct: 228 ITRILNVEIDGKPMPDDRALGLVSLLLLGGLDTVVNFLGF-MMIYLS-RHPETVAEMRRE 285
Query: 265 IYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTLPKDC 323
R VE E R F V R V +++ L +
Sbjct: 286 ----PLKLQRGVE---------------ELFRRFA--VVSDARYVVSDMEFHGTMLKEGD 324
Query: 324 NVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSM 383
+++P +++++ +P + H F+ G C G A L +
Sbjct: 325 LILLPTALHGLDDRHHDDPMTVDLSRR-----DVTH----STFAQGPHRCAGMHLARLEV 375
Query: 384 KVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
V++ L + + +K + + ++ +V P+
Sbjct: 376 TVMLQEWLARIP-EFRLKDRAVPIYHSGIVAAVENIPLE 413
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 63.1 bits (154), Expect = 5e-11
Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYS 267
L+ + G D + + +++ G T+ L N TL HP D +
Sbjct: 216 LVLAEVDGRALDDEEAANFSTALLLAGHITTTVLLGN-IVRTLD-EHPAHWDAAAE---- 269
Query: 268 IFGDSDRP---VEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCN 324
D R VE E LR P P R T+ ++A +P D
Sbjct: 270 ---DPGRIPAIVE---------------EVLRYRPPFPQMQRTTTKATEVAGVPIPADVM 311
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
V ++ + + + +P +F+P ++ A ++F G C+G+ A L +
Sbjct: 312 VNTWVLSANRDSDAHDDPDRFDPSR---KSGGAAQ----LSFGHGVHFCLGAPLARLENR 364
Query: 385 VLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRP 430
V + ++ +F + D E ++ + ++ PV + R+
Sbjct: 365 VALEEIIARFGRLTVDRDDERLRHF-EQIVLGTRHLPVLAGSSPRQS 410
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 63.1 bits (154), Expect = 5e-11
Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 45/217 (20%)
Query: 217 GAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDR 274
G + ++RD ++ M+ G ET+ + TLL P+ Q
Sbjct: 224 GDRLSPEELRDTLLLMISAGYETTVNVIDQ-AVHTLLT-RPD-Q---------------- 264
Query: 275 PVEMEDLAKL----TYMEQVLKETLRLF-PVGPVFLRKVTEEIQIAS-YTLPKDCNVIIP 328
LA + V++ETLR V + LR +I + T+ + ++
Sbjct: 265 ------LALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILAS 318
Query: 329 PVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLI 387
+ + P + D F H +AF G C+G+ A + + + +
Sbjct: 319 YAAANRH------PDWHEDADTFDATRTVKEH----LAFGHGVHFCLGAPLARMEVTLAL 368
Query: 388 STLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
+L +F +++ E++ L+ PV L
Sbjct: 369 ESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLL 405
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 63.0 bits (154), Expect = 5e-11
Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 35/220 (15%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
L ++L+ D G + +I V+T + G ET A + N L+LL HP+ D +
Sbjct: 206 LALMLDAHDRG-LMSRNEIVSTVVTFIFTGHETVASQVGN-AVLSLL-AHPDQLDLL--- 259
Query: 265 IYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCN 324
RP DL + Q ++E LR P R++ ++++ L +D
Sbjct: 260 -------RRRP----DL-----LAQAVEECLRYDPSVQSNTRQLDVDVELRGRRLRRDDV 303
Query: 325 VIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSM 383
V++ + + P+++ PD+F E ++F G R C+GS A +
Sbjct: 304 VVVLAGAANRD------PRRYDRPDDFDIERDPVPS----MSFGAGMRYCLGSYLARTQL 353
Query: 384 KVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
+ ++ L R ++ + + + + R + P+
Sbjct: 354 RAAVAALARLPGLRLGCASDALAYQPRTMFRGLASLPIAF 393
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 61.9 bits (151), Expect = 1e-10
Identities = 37/225 (16%), Positives = 80/225 (35%), Gaps = 39/225 (17%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYS 267
L+ + G +D ++ E + ++IGG ET L+ LL + + D + +
Sbjct: 205 LVSSEVDGERLSDDELVMETLLILIGGDETTRHTLSG-GTEQLL-RNRDQWDLLQRD--- 259
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVII 327
+E E LR R +T + + L +++
Sbjct: 260 -PSLLPGAIE---------------EMLRWTAPVKNMCRVLTADTEFHGTALCAGEKMML 303
Query: 328 PPVNTHHNEKYYKNPKQFNPD---NFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
+ + +E + P++F+ N H +AF G C+G++ A L +
Sbjct: 304 LFESANFDEAVFCEPEKFDVQRNPN--------SH----LAFGFGTHFCLGNQLARLELS 351
Query: 385 VLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDR 428
++ +LR+ +++ + L+ + + PV
Sbjct: 352 LMTERVLRRLPDLRLVADDSVLPLRPANFVSGLESMPVVFTPSPP 396
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 61.5 bits (150), Expect = 2e-10
Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 37/221 (16%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIY 266
+L G + + + IGG + LL E
Sbjct: 218 YSMLGAAVGRG-EVGETEAVGLAGPLQIGGEAVTHNVGQMLYLLLT-RRE---------- 265
Query: 267 SIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLFP--VGPVFLRKVTEEIQIASYTLPKDC 323
M + + L E LR R E++++ +
Sbjct: 266 ----------LMARMRERPGARGTALDELLRWISHRTSVGLARIALEDVEVHGTRIAAGE 315
Query: 324 NVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
V + + + + P F +PD + H +A+ G C G+ A +
Sbjct: 316 PVYVSYLAANRD------PDVFPDPDRIDLDRDPNPH----LAYGNGHHFCTGAVLARMQ 365
Query: 383 MKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
++L+ TLL + ++ V E + + ++R P
Sbjct: 366 TELLVDTLLERLPGLRLAVPAEQVAWRRKTMIRGPRTLPCT 406
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 60.7 bits (148), Expect = 3e-10
Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 40/222 (18%)
Query: 208 DILLEL-KDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
+L + +D G + TD +++ +++GG ET A + L LL +P
Sbjct: 217 GLLGMIVRDHGDNVTDEELKGLCTALILGGVETVAGMIGF-GVLALLD-NPG-------- 266
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
++E L E+V+ E +R PV R +++ I +
Sbjct: 267 ------------QIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAG 314
Query: 323 CNVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
V+ + + + +PD A + F G C+G+ A
Sbjct: 315 DYVLCSILMANRD------EALTPDPDVLDANRAAVSD----VGFGHGIHYCVGAALARS 364
Query: 382 SMKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVR 422
+++ TL R+F ++ V +E++K + + PV
Sbjct: 365 MLRMAYQTLWRRFPGLRLAVPIEEVKYR-SAFVDCPDQVPVT 405
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 59.9 bits (146), Expect = 4e-10
Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 42/217 (19%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYS 267
L T + ++ ++IGG+ET+ + N + +P+I D
Sbjct: 163 LAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTNLIGN-MIRVID-ENPDIIDDALK---- 216
Query: 268 IFGDSDRP--VEMEDLAKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKDCN 324
+R VE ETLR + P+ + R E+ I + + K
Sbjct: 217 -----NRSGFVE---------------ETLRYYSPIQFLPHRFAAEDSYINNKKIKKGDQ 256
Query: 325 VIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
VI+ + + +E ++ P F H +AF G C+G+ A L
Sbjct: 257 VIVYLGSANRDETFFDEPDLFKIGR------REMH----LAFGIGIHMCLGAPLARLEAS 306
Query: 385 VLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPV 421
+ ++ +L F+ + + + +L + ++ +
Sbjct: 307 IALNDILNHFK-RIKIDYKKSRLLDNKMVLGYDKLFL 342
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 60.4 bits (147), Expect = 4e-10
Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 36/226 (15%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDE 264
+ I+ + G T + + +++GG +T + L+ L PE + ++ +
Sbjct: 221 ISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSM-EFLA-KSPEHRQELIER 278
Query: 265 IYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTLPKDC 323
E E LR F V R +T + + L K
Sbjct: 279 ----PERIPAACE---------------ELLRRFS--LVADGRILTSDYEFHGVQLKKGD 317
Query: 324 NVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSM 383
+++P + + +E+ P + H F G+ C+G A +
Sbjct: 318 QILLPQMLSGLDERENACPMHVDFSRQ-----KVSH----TTFGHGSHLCLGQHLARREI 368
Query: 384 KVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRR 429
V + L + + ++ V P+ +
Sbjct: 369 IVTLKEWLTRIP-DFSIAPGAQIQHKSGIVSGVQALPLVWDPATTK 413
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 58.8 bits (143), Expect = 1e-09
Identities = 50/229 (21%), Positives = 85/229 (37%), Gaps = 39/229 (17%)
Query: 208 DILLELKDA--GAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYD 263
D++ L T+ + I + I G ET+ ++N L LL HPE K+
Sbjct: 205 DMISMLLKGREKDKLTEEEAASTCILLAIAGHETTVNLISN-SVLCLLQ-HPEQLLKL-- 260
Query: 264 EIYSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDC 323
+ P DL + ++E LR + R +E+I I T+ +
Sbjct: 261 --------RENP----DL-----IGTAVEECLRYESPTQMTARVASEDIDICGVTIRQGE 303
Query: 324 NVIIPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
V + + + P F NPD F H ++F G C+GS A L
Sbjct: 304 QVYLLLGAANRD------PSIFTNPDVFDITRSPNPH----LSFGHGHHVCLGSSLARLE 353
Query: 383 MKVLISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRRP 430
++ I+TLL++ + + + + R++ PV P
Sbjct: 354 AQIAINTLLQRMPSLNLAD--FEWRYRPLFGFRALEELPVTFEASWSHP 400
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 58.8 bits (143), Expect = 1e-09
Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 45/225 (20%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
++ G D ++R V T+++ G ET+ L HP+ Q
Sbjct: 226 TSDIVRAFHDG-VLDDYELRTLVATVLVAGYETTNHQLAL-AMYDFAQ-HPD-Q------ 275
Query: 265 IYSIFGDSDRPVEMEDLAKL----TYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTL 319
K+ Q ++E LR + R E+ ++ +
Sbjct: 276 ----------------WMKIKENPELAPQAVEEVLRWSPTLPVTATRVAAEDFEVNGVRI 319
Query: 320 PKDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYA 379
P V + H + + + + +F+ A IAF GG C+G+ A
Sbjct: 320 PTGTPVFMCAHVAHRDPRVFADADRFDITVKRE----APS----IAFGGGPHFCLGTALA 371
Query: 380 MLSMKVLISTLLRKFEVQTDVKM-EDIKLKVDLLMRSVHGYPVRL 423
L + ++ L + + ++ +I + +L + P+R
Sbjct: 372 RLELTEAVAALATRLD---PPQIAGEITWRHELGVAGPDALPLRF 413
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 58.4 bits (142), Expect = 2e-09
Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 36/216 (16%)
Query: 212 ELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIF 269
+ G I TM+ GG++T L L P+ + + D
Sbjct: 227 GVGADGDTAGTLSILAFTFTMVTGGNDTVTGMLGG-SMPLLH-RRPDQRRLLLD------ 278
Query: 270 GDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPP 329
D + + ++E LRL R T ++ I T+P V++
Sbjct: 279 -DPEG------------IPDAVEELLRLTSPVQGLARTTTRDVTIGDTTIPAGRRVLLLY 325
Query: 330 VNTHHNEKYYKNPKQF--NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLI 387
+ + + +Q+ + + FS GA C+G+ A + +V +
Sbjct: 326 GSANR------DERQYGPDAAELDVTRCPRNI----LTFSHGAHHCLGAAAARMQCRVAL 375
Query: 388 STLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
+ LL + +V I +R P R+
Sbjct: 376 TELLARCP-DFEVAESRIVWSGGSYVRRPLSVPFRV 410
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 58.0 bits (141), Expect = 2e-09
Identities = 28/206 (13%), Positives = 69/206 (33%), Gaps = 34/206 (16%)
Query: 221 TDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSDRPVEM 278
T+++ ++ G + + PE+ ++
Sbjct: 219 TESEAIATILVFYAVGHMAIGYLIAS-GIELFAR-RPEVFTAFRND-------------- 262
Query: 279 EDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTHHNEKY 338
E ++ E +R+ P FLR TE+++I + + + + +
Sbjct: 263 ESA-----RAAIINEMVRMDPPQLSFLRFPTEDVEIGGVLIEAGSPIRFMIGAANRDPEV 317
Query: 339 YKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRKFEVQT 398
+ +P F+ A+R+ ++F G C G + + + L ++E
Sbjct: 318 FDDPDVFDHTR---PPAASRN----LSFGLGPHSCAGQIISRAEATTVFAVLAERYE--- 367
Query: 399 DVKM-EDIKLKVDLLMRSVHGYPVRL 423
+++ E+ + + R P+ L
Sbjct: 368 RIELAEEPTVAHNDFARRYRKLPIVL 393
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 58.0 bits (141), Expect = 2e-09
Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 39/219 (17%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDEIYS 267
LL+ + G+ + ++ V ++ G++T+ + L LL PE + V E
Sbjct: 229 LLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAF-AVLNLL-RSPEALELVKAE--- 283
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKDCNVI 326
P L M L E LR + +R ++++ ++ K V
Sbjct: 284 -------P----GL-----MRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVF 327
Query: 327 IPPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKV 385
+ + + F PD F + +A+ G C G A L ++
Sbjct: 328 LLIPSALRD------GTVFSRPDVFDVRRDTSAS----LAYGRGPHVCPGVSLARLEAEI 377
Query: 386 LISTLLRKFEVQTDVKM-EDIKLKVDLLMRSVHGYPVRL 423
+ T+ R+F ++K+ E R++ V L
Sbjct: 378 AVGTIFRRFP---EMKLKETPVFGYHPAFRNIESLNVIL 413
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 57.6 bits (140), Expect = 2e-09
Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 43/222 (19%)
Query: 208 DILLEL-KDAGAHFTDADIRDEVITMMIGGSETSA--LTNCFCLTLLGMHPEIQDKVYDE 264
++ + ++ GA +D ++ +I +E A L L L+ HP+
Sbjct: 198 GMIGVIVREHGAEISDEELAGLAEGNLIMAAEQMAAQLAV-AVLLLV-THPD-------- 247
Query: 265 IYSIFGDSDRPVEMEDL-AKLTYMEQVLKETLRLF-PVGPVFLRKVTEEIQIASYTLPKD 322
+M L K ++ +E LR V R ++++A +
Sbjct: 248 ------------QMALLREKPELIDSATEEVLRHASIVEAPAPRVALADVRMAGRDIHAG 295
Query: 323 CNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
+ + T+ D F A H +AF G CIG+ A L
Sbjct: 296 DVLTCSMLATNRAP----------GDRFDITREKATH----MAFGHGIHHCIGAPLARLQ 341
Query: 383 MKVLISTLLRKF-EVQTDVKMEDIKLKVD-LLMRSVHGYPVR 422
++V + ++ +F ++ V ED++ K +V P+
Sbjct: 342 LRVALPAVVGRFPSLRLAVPEEDLRFKPGRPAPFAVEELPLE 383
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 57.3 bits (139), Expect = 4e-09
Identities = 28/232 (12%), Positives = 76/232 (32%), Gaps = 49/232 (21%)
Query: 207 LDILLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDE 264
+ ++ K G ++ D+ +++GG + L++ L E++ ++
Sbjct: 204 MSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTARFLSS-VFWRLA-WDIELRRRLIA- 260
Query: 265 IYSIFGDSDRP---VEMEDLAKLTYMEQVLKETLRLFPVGPV-FLRKVTEEIQIASYTLP 320
+ V+ E LR + P R VT+E+ + T+
Sbjct: 261 ------HPELIPNAVD---------------ELLRFYG--PAMVGRLVTQEVTVGDITMK 297
Query: 321 KDCNVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAM 380
++ + + +P + R ++ G C+G+
Sbjct: 298 PGQTAMLWFPIASRDRSAFDSPDNIVIE---------RTPNRHLSLGHGIHRCLGAHLIR 348
Query: 381 LSMKVLISTLLRKF---EVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRDRR 429
+ +V I+ L++ + + ++ + + + P+ + +R
Sbjct: 349 VEARVAITEFLKRIPEFSLDPN---KECEWL-MGQVAGMLHVPIIF-PKGKR 395
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 56.8 bits (138), Expect = 4e-09
Identities = 34/224 (15%), Positives = 90/224 (40%), Gaps = 43/224 (19%)
Query: 208 DILLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEI 265
+++ + ++ +D + +I ++I G+ET + ++N + + ++ +
Sbjct: 184 EVVSRV--VNSNLSDIEKLGYIILLLIAGNETTTNLISN-SVIDFT--RFNLWQRIRE-- 236
Query: 266 YSIFGDSDRP--VEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDC 323
++ +E E LR P +RK E +++ T+ +
Sbjct: 237 -----ENLYLKAIE---------------EALRYSPPVMRTVRKTKERVKLGDQTIEEGE 276
Query: 324 NVIIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSM 383
V + + + +E+ + + ++F PD R+ ++F G C+G+ A L
Sbjct: 277 YVRVWIASANRDEEVFHDGEKFIPD---------RNPNPHLSFGSGIHLCLGAPLARLEA 327
Query: 384 KVLISTLLRKFEVQTDVKMEDIKLKVDLLMRSVHGYPVRLVTRD 427
++ I ++F +++ D + + ++ VRL + +
Sbjct: 328 RIAIEEFSKRFR---HIEILDTEKVPNEVLNGYKRLVVRLKSNE 368
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 55.7 bits (135), Expect = 1e-08
Identities = 33/218 (15%), Positives = 79/218 (36%), Gaps = 38/218 (17%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYS 267
+ T + V +++ G +T + + L P+ ++ +
Sbjct: 226 CIHAFSDTGEITPEEAPLLVRSLLSAGLDTTVNGIAAA-VYCLAR-FPDEFARLRAD--- 280
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVII 327
+ E E +R F R T ++++A T+ + V++
Sbjct: 281 -PSLARNAFE---------------EAVRFESPVQTFFRTTTRDVELAGATIGEGEKVLM 324
Query: 328 PPVNTHHNEKYYKNPKQF-NPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVL 386
+ + +P+++ +PD + + H + F G C+G A L +V+
Sbjct: 325 FLGSANR------DPRRWDDPDRYDITRKTSGH----VGFGSGVHMCVGQLVARLEGEVV 374
Query: 387 ISTLLRKF-EVQTDVKMEDIKLKVDLLMRSVHGYPVRL 423
++ L RK ++ +K + + +R + P++L
Sbjct: 375 LAALARKVAAIEIAG---PLKRRFNNTLRGLESLPIQL 409
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 53.9 bits (130), Expect = 4e-08
Identities = 45/214 (21%), Positives = 71/214 (33%), Gaps = 36/214 (16%)
Query: 216 AGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDSD 273
T D+ ++IGG+ET A+T L P + + D D D
Sbjct: 235 TDDDLTIDDVLLNCDNVLIGGNETTRHAITG-AVHALA-TVPGLLTALRDG----SADVD 288
Query: 274 RPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPPVNTH 333
VE E LR LR T ++ I LP V+ +
Sbjct: 289 TVVE---------------EVLRWTSPAMHVLRVTTADVTINGRDLPSGTPVVAWLPAAN 333
Query: 334 HNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLISTLLRK 393
+ + +P F P RH I F G C+GS A + + V++ L +
Sbjct: 334 RDPAEFDDPDTFLPGRK-----PNRH----ITFGHGMHHCLGSALARIELSVVLRVLAER 384
Query: 394 FEVQTDVKM-EDIKLKVDLLMRSVHGYPVRLVTR 426
V + + ++++ PVR R
Sbjct: 385 VS---RVDLEREPAWLRAIVVQGYRELPVRFTGR 415
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 52.2 bits (126), Expect = 1e-07
Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 50/223 (22%)
Query: 208 DILLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEI 265
D+ ++ A ++ ++ + I +MI G+ET + + N + D V ++
Sbjct: 185 DLTGKI--ANSNLSELEKEGYFILLMIAGNETTTNLIGN-AIEDFTL-YNS-WDYVREK- 238
Query: 266 YSIFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNV 325
+ + VE E LR P +R E+++I + + V
Sbjct: 239 -----GALKAVE---------------EALRFSPPVMRTIRVTKEKVKIRDQVIDEGELV 278
Query: 326 IIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKV 385
+ + + +E+ +K+P F PD R ++F G C+G+ A L ++
Sbjct: 279 RVWIASANRDEEVFKDPDSFIPD---------RTPNPHLSFGSGIHLCLGAPLARLEARI 329
Query: 386 LISTLLRKFEVQTDVKMEDIKLKVDLLMRS--VHGY---PVRL 423
+ +KF ++ + + ++GY VR+
Sbjct: 330 ALEEFAKKF--------RVKEIVKKEKIDNEVLNGYRKLVVRV 364
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 54/344 (15%), Positives = 113/344 (32%), Gaps = 90/344 (26%)
Query: 74 KIEMFMEKYEAPFK-FW--VGHELYIIVSKPEDL---------QIVLNNTKTLEKGPAYK 121
K++ M FK FW + + + PE + QI N T + K
Sbjct: 175 KVQCKM-----DFKIFWLNLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 122 FFLNTVGTG---LFSAPVEK---------WRRNRKVITPAFNMN---LMT-------HFI 159
++++ L + + N K AFN++ L+T F+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWN-AFNLSCKILLTTRFKQVTDFL 281
Query: 160 PVFREKNAILMNRLKKFENTGKTFDLW-EYISGAALDI---ICHSKKLKVFLDILLELKD 215
+ L + + L +Y+ D+ + + ++ + I ++D
Sbjct: 282 SAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRD 339
Query: 216 AGAHF-----TDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEIQDKVYDEIYSIFG 270
A + + D +I L +L P K++D + S+F
Sbjct: 340 GLATWDNWKHVNCDKLTTIIES--------------SLNVL--EPAEYRKMFDRL-SVFP 382
Query: 271 DSDRPVEMEDLAKL------TYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCN 324
+ L+ + + + V+ + + + K +E I+ ++ +
Sbjct: 383 P-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKESTISIPSIYLELK 436
Query: 325 VIIPPVNTHHNE--KYYKNPKQFNPDNFTPEAIAARHKYSFIAF 366
V + H +Y PK F+ D+ P + ++ YS I
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGH 479
Score = 49.5 bits (117), Expect = 2e-06
Identities = 34/252 (13%), Positives = 80/252 (31%), Gaps = 59/252 (23%)
Query: 39 RQRLEYLA-----SKIPGPPALPIVGNGLAFIGNPEDVMGKIEMF--MEKYEAPFKFWVG 91
R+ + L+ + IP L ++ + + V+ K+ + +EK +
Sbjct: 372 RKMFDRLSVFPPSAHIP-TILLSLIWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 92 HELYIIVSKPEDLQIVLNNTKTLEKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFN 151
+Y+ + + + L+ ++ Y L ++++ F
Sbjct: 429 PSIYLELKVKLENEYALHR-SIVDH---YNIPKTFDSDDLIPPYLDQY----------FY 474
Query: 152 MNLMTHFIPVFREKNAILMNRLKKFENTGKTFDLWEYISGAALDI------ICHSKKLKV 205
++ H LK E+ + L+ + LD I H
Sbjct: 475 SHIGHH---------------LKNIEHPER-MTLFRMV---FLDFRFLEQKIRHDSTAWN 515
Query: 206 ----FLDILLELKDAGAHFTDADIRDE-----VITMMIGGSETSALTNCFCLTLLGMHPE 256
L+ L +LK + D D + E ++ + E + L + + E
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 257 IQDKVYDEIYSI 268
+ +++E +
Sbjct: 576 -DEAIFEEAHKQ 586
Score = 29.8 bits (66), Expect = 1.9
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 38/126 (30%)
Query: 333 HH-----NEKYYKNPK--QFNPDNF-----------TPEAIAARHKYSFIAFSGGARGCI 374
HH E Y+ D F P++I ++ + I I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---------I 55
Query: 375 GSKYAMLSMKVLISTLLRKFEVQTDVKMEDIKLKVD--LLMRSVHGYPVRLVTRDRRPSH 432
SK A+ L TLL K E +E++ L+++ LM + T R+PS
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIK-------TEQRQPSM 107
Query: 433 ILTKLY 438
+ T++Y
Sbjct: 108 M-TRMY 112
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 50.0 bits (120), Expect = 7e-07
Identities = 39/221 (17%), Positives = 87/221 (39%), Gaps = 53/221 (23%)
Query: 215 DAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYSIFGDS 272
A + T + V+ +++GG++T +++T + L +P+ K+ +
Sbjct: 245 PATRNMTPEEYLGNVLLLIVGGNDTTRNSMTGG--VLALHKNPDQFAKLKAN------PA 296
Query: 273 DRP--VEMEDLAKLTYMEQVLKETLRLFPVGPV--FLRKVTEEIQIASYTLPKDCNVIIP 328
V E +R P+ R + ++ T+ K V++
Sbjct: 297 LVETMVP---------------EIIRW--QTPLAHMRRTAIADSELGGKTIRKGDKVVMW 339
Query: 329 PVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMKVLIS 388
+ + +++ P++F D P +H ++F G C+G++ A + +++L
Sbjct: 340 YYSGNRDDEVIDRPEEFIIDRPRPR----QH----LSFGFGIHRCVGNRLAEMQLRILWE 391
Query: 389 TLLRKFEVQTDVKMEDIKLKVDL-LMRS--VHGY---PVRL 423
+L +F I++ + +RS V GY VR+
Sbjct: 392 EILTRF--------SRIEVMAEPERVRSNFVRGYAKMMVRV 424
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 49.6 bits (119), Expect = 1e-06
Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYS 267
L+E + G + +I I +++ G+ET +A+T+ L L +PE +D+ +
Sbjct: 249 LVEAEVDGERLSSREIASFFILLVVAGNETTRNAITH-GVLALS-RYPEQRDRWWS---- 302
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPV--FLRKVTEEIQIASYTLPKDCNV 325
D ++E +R PV R +T++I++ + V
Sbjct: 303 -----DFD---------GLAPTAVEEIVRW--ASPVVYMRRTLTQDIELRGTKMAAGDKV 346
Query: 326 IIPPVNTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSG-GARGCIGSKYAMLSMK 384
+ + + +E + +P F+ R+ + F G GA C+G+ A ++
Sbjct: 347 SLWYCSANRDESKFADPWTFDLA---------RNPNPHLGFGGGGAHFCLGANLARREIR 397
Query: 385 VLISTLLRKFEVQTDVKMEDIKLKVDL-LMRS--VHGY---PVRL 423
V L R+ D+ + + S +HG PV
Sbjct: 398 VAFDELRRQM--------PDVVATEEPARLLSQFIHGIKTLPVTW 434
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 48.1 bits (115), Expect = 4e-06
Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 56/227 (24%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYS 267
L K G + D I + + G +T S+ + L +PE +
Sbjct: 242 LANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGA--IIGLSRNPEQLALAKSD--- 296
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPV--FLRKVTEEIQIASYTLPKDCNV 325
R V+ E +R PV F+R + ++ + + +
Sbjct: 297 -PALIPRLVD---------------EAVRW--TAPVKSFMRTALADTEVRGQNIKRGDRI 338
Query: 326 IIPPVNTHHNEKYYKNPKQFNPD---NFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLS 382
++ + + +E+ + NP +F+ N RH + F GA C+G A L
Sbjct: 339 MLSYPSANRDEEVFSNPDEFDITRFPN--------RH----LGFGWGAHMCLGQHLAKLE 386
Query: 383 MKVLISTLLRKFEVQTDVKMEDIKLKVDL-LMRS--VHGY---PVRL 423
MK+ LL K + ++L L+ + V G P+R
Sbjct: 387 MKIFFEELLPKL--------KSVELSGPPRLVATNFVGGPKNVPIRF 425
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 47.3 bits (113), Expect = 6e-06
Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 59/231 (25%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYS 267
L++ G +D + V+ + + G+ET +++T + HP+ +
Sbjct: 243 LIQADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITQG--MMAFAEHPDQWELYKKVR-- 298
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPV--FLRKVTEEIQIASYTLPKDCNV 325
+ + E +R PV F R + +++ + K V
Sbjct: 299 ----PETAAD---------------EIVRW--ATPVTAFQRTALRDYELSGVQIKKGQRV 337
Query: 326 IIPPVNTHHNEKYYKNPKQFNPD---NFTPEAIAARHKYSFIAFSG-GARGCIGSKYAML 381
++ + + +E+ +++P FN N H + F G GA CIG+ A +
Sbjct: 338 VMFYRSANFDEEVFQDPFTFNILRNPN--------PH----VGFGGTGAHYCIGANLARM 385
Query: 382 SMKVLISTLLRKFEVQTDVKMEDIKLKVDL-LMRS--VHGY---PVRLVTR 426
++ ++ + + D+K +RS ++G V R
Sbjct: 386 TINLIFNAVADHM--------PDLKPISAPERLRSGWLNGIKHWQVDYTGR 428
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 9e-06
Identities = 80/514 (15%), Positives = 143/514 (27%), Gaps = 192/514 (37%)
Query: 10 ESTSLTVSNIIFYVFVTTLVAYAVNFKRKRQRL--EYLASKI--------PGPPAL-PIV 58
E+ L ++I + L+ K + L Y+ ++I AL V
Sbjct: 92 ENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 59 GNGLAFI-------GNPEDVMGKIEMFMEKYE---APFKFWVGHELYIIVSKPED----- 103
G G A + GN +D ++ + Y + L ++ D
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 104 ---LQIV--LNNTKTLEKGPAYKFFLNTVGTGLFSAPVEKWRRNRKVITPAFNMNLMT-- 156
L I+ L N P + L S P+ + + +
Sbjct: 210 TQGLNILEWLENP---SNTPDKDYLL--------SIPI------------SCPLIGVIQL 246
Query: 157 -HFIPVFREKNAILMNRLKKFENTGKT-FDLWEYISGAALDIICHSKKLKVFLDILLELK 214
H++ + G T +L Y+ GA HS+ + + +
Sbjct: 247 AHYVVTAK--------------LLGFTPGELRSYLKGA----TGHSQG--LVTAVAIAET 286
Query: 215 DAGAHFTDADIRDEVITMM--IG--GSETSALTNCFCLTLLGMHPEI-QDKVYDEIYSIF 269
D+ F + + IT++ IG E T+ + P I +D S+
Sbjct: 287 DSWESFFVSVRK--AITVLFFIGVRCYEAYPNTS--------LPPSILED-------SLE 329
Query: 270 GDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVIIPP 329
+ P + M + + +V + + + LP V I
Sbjct: 330 NNEGVP---------SPM----------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 330 VNTHHNEKYYKNPKQFNPDNF----TPEA----------IAARHKY--SFIAFSGGARGC 373
VN N P++ A S I FS R
Sbjct: 371 VNG--------------AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--R-- 412
Query: 374 IGSKYAMLSMKVL-I-----STLLRKFE--VQTDVKMEDIKLKVDLL------------M 413
K S + L + S LL + D+ ++ + +
Sbjct: 413 ---K-LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 414 RSVHGYP----VRLVTRDR---------RPSHIL 434
R + G V + R + +HIL
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 33.9 bits (77), Expect = 0.13
Identities = 55/300 (18%), Positives = 75/300 (25%), Gaps = 137/300 (45%)
Query: 72 MGKIEMFMEKYEAPFKF---W-----VGHELY---IIVSKPEDLQIVLNNTKTL------ 114
MG M+ Y+ W + Y I L IV+NN L
Sbjct: 1631 MG-----MDLYKTSKAAQDVWNRADNHFKDTYGFSI-------LDIVINNPVNLTIHFGG 1678
Query: 115 EKGPA----Y----------------KFF--LNTVGTGL-FSAPVEKWRRNRKVIT-PAF 150
EKG Y K F +N T F + + T PA
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL--SATQFTQPA- 1735
Query: 151 NMNLMTHFIPVFREKNAILMNRLKK--FENTGKTF---DLWEYISGAALDIICHSKKLKV 205
L F + LK TF L EY AAL +
Sbjct: 1736 ---LTLMEKAAFED--------LKSKGLIPADATFAGHSLGEY---AAL--ASLAD---- 1775
Query: 206 FLDILLELKDA-------GAHFTDADIRDEV------------ITMMIGGSE-------- 238
++ ++ G A RDE+ + S+
Sbjct: 1776 ----VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 239 -TSALTNCFCLTLLGMHPEIQDKV-Y---DEIYSIFGDSDRPVEMEDLAKLTYMEQVLKE 293
T EI V Y ++ Y GD + L +T VL
Sbjct: 1832 RVGKRTGWLV--------EI---VNYNVENQQYVAAGD------LRALDTVT---NVLNF 1871
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 46.2 bits (110), Expect = 1e-05
Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 52/225 (23%)
Query: 210 LLELKDAGAHFTDADIRDEVITMMIGGSET--SALTNCFCLTLLGMHPEIQDKVYDEIYS 267
+ G +D D I G +T ++ L L P++ +V +
Sbjct: 264 IANAVVDGEPMSDRDTAGYYIITASAGHDTTSASSAG-AALALA-RDPDLFARVKAD--- 318
Query: 268 IFGDSDRPVEMEDLAKLTYMEQVLKETLRLFPVGPVFLRKVTEEIQIASYTLPKDCNVII 327
VE E +R F+R + ++ + +++
Sbjct: 319 -RNLLPGIVE---------------EAIRWTTPVQHFMRTAATDTELCGQKIAAGDWLML 362
Query: 328 PPVNTHHNEKYYKNPKQFNPD---NFTPEAIAARHKYSFIAFSGGARGCIGSKYAMLSMK 384
V +H+ + P++F+P N RH +AF G+ C+G A L M+
Sbjct: 363 NYVAANHDPAQFPEPRKFDPTRPAN--------RH----LAFGAGSHQCLGLHLARLEMR 410
Query: 385 VLISTLLRKFEVQTDVKMEDIKLKVDL-LMRS--VHGY---PVRL 423
VL+ LL + + ++L + + S V G+ P+R
Sbjct: 411 VLLDVLLDRV--------DSLELAGEPKRVNSTFVGGFKSLPMRW 447
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.035
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 164 EKNAILMNRLKKFENTGKTF--DLWEYISGAALDI 196
EK A+ KK + + K + D S AL I
Sbjct: 18 EKQAL-----KKLQASLKLYADD-----SAPALAI 42
Score = 31.5 bits (70), Expect = 0.30
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 38 KRQRLEYLAS--KIPGP---PALPI 57
++Q L+ L + K+ PAL I
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI 42
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 198 CHSKKLKVFLDILLELKDAGAHFTDADIRDEVITMMIGGSETSALTNCFCLTLLGMHPEI 257
+ LDIL+ + F +A ++ MI + L + L G E+
Sbjct: 434 FSQNFVSGILDILISDNELKERFIEALNSNKSDYKMIADDQQRKLACVWNPFLDGW--EL 491
Query: 258 QDKVYDEIYSIFGDSDRP 275
+ D I D P
Sbjct: 492 NAQHVDMIMGSHVLKDMP 509
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center
for structural genomics, JCSG; HET: MSE EPE; 1.60A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 443
Score = 30.2 bits (68), Expect = 1.4
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 333 HHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCI 374
++ ++ FNP + A + G + +
Sbjct: 42 NNRINPIEDYNIFNPTELNTDQWVQ------AAKAAGCKFAV 77
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor
complex; HET: DFU; 1.60A {Bifidobacterium longum subsp}
PDB: 3mo4_A* 3uet_A*
Length = 478
Score = 30.0 bits (67), Expect = 1.7
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 330 VNTHHNE---KYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCI 374
+NT + +++P FNP N + +GG G I
Sbjct: 39 MNTMTDREWGLGHEDPALFNPRNVDVDQWMD------ALVAGGMAGVI 80
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 29.7 bits (67), Expect = 1.9
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 23/71 (32%)
Query: 173 LKKFENTGKTFDLWEYISGAALDIICHS------------KKLKVFLDILLELKDAGAHF 220
+K+F +GK A+ ICH +K + + L AGA +
Sbjct: 114 VKEFSRSGKPI--------AS---ICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKW 162
Query: 221 TDADIRDEVIT 231
+ D +
Sbjct: 163 VEPITPDVCVV 173
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 28.8 bits (64), Expect = 3.7
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 31 YAVNFKRKRQRLEYLASKIPGPPA---LPIVGNGLAFIGNPEDVMGKIEMFMEKY 82
Y + R+ ++ A P L + + + +G+P+ V KI E
Sbjct: 284 YLIPIWRRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEAT 338
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase,
lipoprotein, PSI-2, protein initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 469
Score = 28.8 bits (64), Expect = 4.6
Identities = 7/49 (14%), Positives = 10/49 (20%), Gaps = 10/49 (20%)
Query: 330 VNTHHN----EKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCI 374
+NT + FNP + G I
Sbjct: 30 INTFEEYVNEGDGKASTAIFNPTALDCRQWMQ------TLKAAGIPAAI 72
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase;
HET: DNA; 2.40A {Neisseria gonorrhoeae}
Length = 220
Score = 27.6 bits (62), Expect = 7.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 205 VFLDILLELKDAGAHFTDADIRDEVITMM 233
+ D+L EL G+ T A + ++ M
Sbjct: 136 LARDVLGELAQVGSSQTIASHENRILATM 164
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase
family 29; 1.73A {Bacteroides thetaiotaomicron} PDB:
2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Length = 450
Score = 27.4 bits (61), Expect = 9.5
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 331 NTHHNEKYYKNPKQFNPDNFTPEAIAARHKYSFIAFSGGARGCIGSKYAML 381
+++ K Q+NP F + A K G KY +
Sbjct: 59 AKVPADEWLKLMDQWNPTKFDAKKWAKMAKEM------GT------KYVKI 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.410
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,919,825
Number of extensions: 435719
Number of successful extensions: 1177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 124
Length of query: 438
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 342
Effective length of database: 4,021,377
Effective search space: 1375310934
Effective search space used: 1375310934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)