Query psy7393
Match_columns 549
No_of_seqs 346 out of 956
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:05:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00153 histone H2A; Provisio 100.0 4.2E-44 9.2E-49 324.6 9.8 122 207-328 1-122 (129)
2 PLN00157 histone H2A; Provisio 100.0 1.9E-43 4.1E-48 321.5 10.0 121 207-327 1-123 (132)
3 PTZ00017 histone H2A; Provisio 100.0 3.5E-42 7.6E-47 314.0 9.5 122 207-328 1-125 (134)
4 PLN00156 histone H2AX; Provisi 100.0 4.1E-42 8.9E-47 314.7 9.4 115 213-327 12-126 (139)
5 PLN00153 histone H2A; Provisio 100.0 1.5E-41 3.2E-46 308.1 8.8 120 349-478 1-120 (129)
6 PTZ00252 histone H2A; Provisio 100.0 1.8E-41 3.8E-46 308.5 9.0 108 218-325 12-122 (134)
7 PLN00157 histone H2A; Provisio 100.0 1.1E-40 2.4E-45 303.5 9.5 121 349-479 1-123 (132)
8 KOG1756|consensus 100.0 1.5E-40 3.2E-45 299.3 8.4 122 207-328 1-125 (131)
9 PLN00154 histone H2A; Provisio 100.0 2.6E-40 5.5E-45 301.8 9.5 111 216-327 24-135 (136)
10 smart00414 H2A Histone 2A. 100.0 3.6E-40 7.7E-45 291.0 8.7 105 222-326 1-105 (106)
11 PLN00156 histone H2AX; Provisi 100.0 1.1E-39 2.4E-44 298.7 9.4 118 352-479 9-126 (139)
12 PTZ00017 histone H2A; Provisio 100.0 2.8E-39 6E-44 295.1 8.8 110 359-478 14-123 (134)
13 cd00074 H2A Histone 2A; H2A is 100.0 4.1E-39 9E-44 287.9 9.3 112 214-325 4-115 (115)
14 KOG1756|consensus 100.0 7.1E-39 1.5E-43 288.5 8.3 122 349-480 1-125 (131)
15 PTZ00252 histone H2A; Provisio 100.0 1.7E-38 3.6E-43 289.1 8.4 106 361-476 13-121 (134)
16 PLN00154 histone H2A; Provisio 100.0 2.6E-38 5.6E-43 288.7 8.6 121 348-479 8-135 (136)
17 COG5262 HTA1 Histone H2A [Chro 100.0 2.7E-38 5.9E-43 281.6 7.8 120 211-330 5-126 (132)
18 smart00414 H2A Histone 2A. 100.0 3.1E-37 6.8E-42 272.4 7.8 106 364-479 1-106 (106)
19 COG5262 HTA1 Histone H2A [Chro 100.0 1.2E-36 2.7E-41 271.0 8.0 118 352-479 4-123 (132)
20 cd00074 H2A Histone 2A; H2A is 100.0 3E-36 6.6E-41 269.5 8.7 112 356-477 4-115 (115)
21 KOG1757|consensus 100.0 2E-33 4.3E-38 249.0 3.7 111 217-328 17-128 (131)
22 KOG1757|consensus 100.0 7E-33 1.5E-37 245.5 2.2 109 359-478 17-126 (131)
23 PLN00155 histone H2A; Provisio 99.8 1.9E-21 4.2E-26 155.3 4.3 58 349-406 1-58 (58)
24 PLN00155 histone H2A; Provisio 99.8 3.3E-20 7.2E-25 148.3 4.2 58 207-264 1-58 (58)
25 PF00125 Histone: Core histone 99.2 1.2E-11 2.6E-16 101.2 3.1 73 224-296 2-75 (75)
26 PF00125 Histone: Core histone 99.1 3.7E-11 8E-16 98.3 4.7 73 366-442 2-75 (75)
27 COG5247 BUR6 Class 2 transcrip 98.9 7.8E-10 1.7E-14 97.8 4.9 79 228-306 21-99 (113)
28 KOG1659|consensus 98.5 1E-07 2.3E-12 93.8 4.7 76 228-303 11-86 (224)
29 COG5247 BUR6 Class 2 transcrip 98.4 2.2E-07 4.8E-12 82.6 4.9 75 372-450 23-97 (113)
30 PF00808 CBFD_NFYB_HMF: Histon 98.2 1.5E-06 3.3E-11 70.0 4.7 64 230-293 2-65 (65)
31 PLN00035 histone H4; Provision 98.0 7.1E-06 1.5E-10 73.3 5.4 86 349-441 1-93 (103)
32 PF00808 CBFD_NFYB_HMF: Histon 97.9 2.4E-05 5.2E-10 63.0 6.1 64 372-439 2-65 (65)
33 KOG1659|consensus 97.9 1.7E-05 3.8E-10 78.4 5.8 75 372-450 13-87 (224)
34 PLN00035 histone H4; Provision 97.8 1.4E-05 3.1E-10 71.4 3.8 86 207-295 1-93 (103)
35 PTZ00015 histone H4; Provision 97.4 0.00062 1.3E-08 61.0 7.3 72 363-441 23-94 (102)
36 PTZ00015 histone H4; Provision 97.3 0.00041 8.9E-09 62.1 5.0 69 223-294 25-93 (102)
37 smart00803 TAF TATA box bindin 97.0 0.0012 2.6E-08 54.4 5.1 64 230-294 2-65 (65)
38 smart00803 TAF TATA box bindin 96.8 0.004 8.7E-08 51.3 6.2 64 372-440 2-65 (65)
39 COG2036 HHT1 Histones H3 and H 96.5 0.0027 5.9E-08 55.9 3.8 66 228-294 17-82 (91)
40 COG2036 HHT1 Histones H3 and H 96.4 0.004 8.6E-08 54.8 4.2 67 370-441 17-83 (91)
41 cd00076 H4 Histone H4, one of 96.3 0.0082 1.8E-07 52.2 5.5 70 365-441 8-77 (85)
42 KOG1657|consensus 95.9 0.0067 1.4E-07 61.4 3.7 79 227-305 71-149 (236)
43 cd00076 H4 Histone H4, one of 95.9 0.013 2.8E-07 51.0 4.6 69 224-295 9-77 (85)
44 smart00417 H4 Histone H4. 95.4 0.022 4.8E-07 48.4 4.4 66 224-292 9-74 (74)
45 smart00417 H4 Histone H4. 95.3 0.026 5.7E-07 48.0 4.6 66 365-437 8-73 (74)
46 COG5208 HAP5 CCAAT-binding fac 95.2 0.028 6E-07 56.6 4.9 75 229-303 108-182 (286)
47 cd07981 TAF12 TATA Binding Pro 94.8 0.098 2.1E-06 43.7 6.4 66 374-443 3-68 (72)
48 cd07981 TAF12 TATA Binding Pro 94.6 0.063 1.4E-06 44.8 4.8 64 233-296 4-67 (72)
49 cd08048 TAF11 TATA Binding Pro 94.5 0.071 1.5E-06 46.3 5.2 63 231-294 17-82 (85)
50 KOG1657|consensus 93.7 0.1 2.2E-06 53.0 5.3 79 369-451 71-149 (236)
51 smart00427 H2B Histone H2B. 92.8 0.17 3.7E-06 44.7 4.6 60 235-294 6-65 (89)
52 PLN00158 histone H2B; Provisio 92.1 0.24 5.1E-06 45.7 4.7 61 234-294 31-91 (116)
53 PF04719 TAFII28: hTAFII28-lik 90.9 0.22 4.8E-06 43.9 3.2 64 231-294 24-88 (90)
54 PTZ00463 histone H2B; Provisio 90.7 0.42 9E-06 44.1 4.8 60 235-294 33-92 (117)
55 cd08050 TAF6 TATA Binding Prot 90.7 0.58 1.3E-05 49.5 6.6 78 388-469 14-93 (343)
56 cd07979 TAF9 TATA Binding Prot 90.6 0.74 1.6E-05 42.0 6.3 60 377-441 6-65 (117)
57 COG5208 HAP5 CCAAT-binding fac 90.4 0.33 7.2E-06 49.1 4.2 75 371-449 108-182 (286)
58 PLN00158 histone H2B; Provisio 90.3 1 2.2E-05 41.7 6.9 65 372-441 28-92 (116)
59 cd07979 TAF9 TATA Binding Prot 90.2 0.48 1E-05 43.3 4.8 61 235-296 6-66 (117)
60 PTZ00463 histone H2B; Provisio 89.8 1.2 2.5E-05 41.3 6.9 64 373-441 30-93 (117)
61 KOG3219|consensus 89.4 0.28 6.1E-06 48.7 2.8 66 228-294 110-176 (195)
62 PF02969 TAF: TATA box binding 89.3 0.66 1.4E-05 38.8 4.6 63 231-294 4-66 (66)
63 cd08050 TAF6 TATA Binding Prot 88.8 0.48 1E-05 50.1 4.3 57 246-302 14-72 (343)
64 cd08048 TAF11 TATA Binding Pro 88.2 1.8 4E-05 37.7 6.7 66 373-440 17-82 (85)
65 PF04719 TAFII28: hTAFII28-lik 88.2 0.99 2.2E-05 39.9 5.1 64 373-440 24-88 (90)
66 KOG3219|consensus 86.8 0.87 1.9E-05 45.3 4.4 68 371-442 111-178 (195)
67 PF02969 TAF: TATA box binding 86.5 2.5 5.5E-05 35.4 6.3 64 372-440 3-66 (66)
68 smart00427 H2B Histone H2B. 85.2 2.7 5.9E-05 37.2 6.2 61 377-441 6-66 (89)
69 PF09415 CENP-X: CENP-S associ 82.6 3.5 7.5E-05 35.0 5.6 61 232-292 1-64 (72)
70 smart00428 H3 Histone H3. 81.0 3.5 7.7E-05 37.4 5.4 67 370-440 27-99 (105)
71 smart00428 H3 Histone H3. 80.0 2.5 5.4E-05 38.4 4.1 67 228-294 27-99 (105)
72 KOG1744|consensus 79.7 6.6 0.00014 37.0 6.8 64 228-294 38-101 (127)
73 smart00576 BTP Bromodomain tra 79.5 3.6 7.8E-05 34.6 4.7 59 236-295 12-70 (77)
74 PF15630 CENP-S: Kinetochore c 73.9 8.1 0.00017 33.2 5.3 49 251-299 25-76 (76)
75 smart00576 BTP Bromodomain tra 71.7 14 0.0003 31.1 6.2 59 378-441 12-70 (77)
76 KOG0871|consensus 69.2 7.6 0.00016 37.5 4.5 69 226-295 8-78 (156)
77 KOG3467|consensus 66.3 15 0.00033 32.8 5.5 85 349-440 1-92 (103)
78 PF03847 TFIID_20kDa: Transcri 56.5 17 0.00037 30.5 4.0 61 235-295 4-64 (68)
79 KOG0869|consensus 56.2 19 0.00042 35.1 4.8 65 230-294 32-97 (168)
80 PF03847 TFIID_20kDa: Transcri 52.8 43 0.00093 28.1 5.8 61 377-441 4-64 (68)
81 KOG1744|consensus 52.1 58 0.0013 30.9 7.0 70 365-441 33-102 (127)
82 KOG3467|consensus 51.6 24 0.00053 31.6 4.3 84 207-293 1-91 (103)
83 PF09415 CENP-X: CENP-S associ 51.3 60 0.0013 27.6 6.5 62 374-438 1-64 (72)
84 PF15511 CENP-T: Centromere ki 48.2 18 0.00039 39.6 3.6 72 217-288 338-414 (414)
85 cd07978 TAF13 The TATA Binding 45.9 34 0.00073 30.3 4.3 38 261-298 30-69 (92)
86 PF15630 CENP-S: Kinetochore c 45.5 43 0.00093 28.8 4.8 70 368-445 4-76 (76)
87 PF02269 TFIID-18kDa: Transcri 44.6 23 0.00049 31.2 3.1 42 258-299 26-70 (93)
88 KOG0871|consensus 41.7 73 0.0016 31.0 6.1 68 369-442 9-79 (156)
89 PLN00163 histone H4; Provision 38.4 12 0.00026 31.1 0.3 43 349-394 1-50 (59)
90 KOG0870|consensus 38.4 84 0.0018 31.1 6.0 67 369-440 7-76 (172)
91 PF02861 Clp_N: Clp amino term 38.2 17 0.00036 27.2 1.1 34 272-305 1-36 (53)
92 KOG0870|consensus 38.0 51 0.0011 32.6 4.5 67 228-294 8-76 (172)
93 KOG0869|consensus 36.9 91 0.002 30.7 6.0 66 372-441 32-98 (168)
94 KOG1142|consensus 29.4 71 0.0015 33.5 4.2 67 231-297 155-221 (258)
95 PF15511 CENP-T: Centromere ki 29.2 70 0.0015 35.1 4.4 72 359-434 338-414 (414)
96 PF02291 TFIID-31kDa: Transcri 27.5 1.2E+02 0.0025 28.7 4.9 59 234-296 16-77 (129)
97 KOG1658|consensus 26.4 61 0.0013 31.7 3.0 74 229-303 58-132 (162)
98 COG5150 Class 2 transcription 26.2 75 0.0016 30.3 3.4 44 251-296 34-78 (148)
99 PF02291 TFIID-31kDa: Transcri 25.3 2.4E+02 0.0051 26.6 6.6 58 376-441 16-76 (129)
100 PF07524 Bromo_TP: Bromodomain 24.5 1.5E+02 0.0032 24.7 4.6 48 247-294 22-69 (77)
101 COG5150 Class 2 transcription 24.3 1.1E+02 0.0023 29.3 4.0 68 370-443 9-79 (148)
102 cd07978 TAF13 The TATA Binding 23.3 1.9E+02 0.0041 25.6 5.2 37 404-444 31-69 (92)
103 COG5251 TAF40 Transcription in 22.1 69 0.0015 31.9 2.5 64 231-295 116-180 (199)
104 PHA02669 hypothetical protein; 21.0 1.5E+02 0.0033 29.6 4.5 80 395-495 12-92 (210)
105 PLN00160 histone H3; Provision 21.0 1E+02 0.0023 27.8 3.2 67 228-294 19-90 (97)
No 1
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=4.2e-44 Score=324.65 Aligned_cols=122 Identities=72% Similarity=1.074 Sum_probs=116.8
Q ss_pred ccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccch
Q psy7393 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 286 (549)
Q Consensus 207 MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITP 286 (549)
|||+|++++.+++..|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++||+|
T Consensus 1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItP 80 (129)
T PLN00153 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80 (129)
T ss_pred CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCh
Confidence 89998866656678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 287 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 287 rHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
+||++||+||+||++||+++||++|||+|+||++|++||+..
T Consensus 81 rHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~ 122 (129)
T PLN00153 81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKG 122 (129)
T ss_pred HHHHhhccCcHHHHHHHCCCccCCCccCCCcchhhcCcccCC
Confidence 999999999999999999999999999999999999998643
No 2
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=1.9e-43 Score=321.49 Aligned_cols=121 Identities=74% Similarity=1.109 Sum_probs=115.9
Q ss_pred ccCCCC--CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q psy7393 207 MSGRGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 284 (549)
Q Consensus 207 MSgrgk--~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRI 284 (549)
|||+|+ +++++++..|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++||
T Consensus 1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI 80 (132)
T PLN00157 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80 (132)
T ss_pred CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 899887 446667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393 285 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI 327 (549)
Q Consensus 285 TPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~ 327 (549)
+|+||++||+||+||+.||+++||++|||+|+||++|++||+.
T Consensus 81 tPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~ 123 (132)
T PLN00157 81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSG 123 (132)
T ss_pred cHHHHhhcccCcHHHHHHHcCceecCCccCCCcchhhcCCCCC
Confidence 9999999999999999999999999999999999999999864
No 3
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=3.5e-42 Score=314.01 Aligned_cols=122 Identities=72% Similarity=1.078 Sum_probs=112.8
Q ss_pred ccCCCCC-CC--CCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy7393 207 MSGRGKG-GK--AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 283 (549)
Q Consensus 207 MSgrgk~-gk--~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkR 283 (549)
|||+++. ++ ++++..|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++|
T Consensus 1 ~~~~~~~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R 80 (134)
T PTZ00017 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR 80 (134)
T ss_pred CCCCCcCCCCcccCcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 4566552 22 25567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 284 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 284 ITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
|+|+||++||+||+||+.||+++||++|||+|+||++|++||+..
T Consensus 81 ItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~ 125 (134)
T PTZ00017 81 ITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKP 125 (134)
T ss_pred ecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccHhhccCCCCc
Confidence 999999999999999999999999999999999999999998643
No 4
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=4.1e-42 Score=314.71 Aligned_cols=115 Identities=72% Similarity=1.055 Sum_probs=110.8
Q ss_pred CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393 213 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 292 (549)
Q Consensus 213 ~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA 292 (549)
+++++++.+|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++||+|+||++|
T Consensus 12 g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lA 91 (139)
T PLN00156 12 GKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLA 91 (139)
T ss_pred CcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhh
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393 293 IRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI 327 (549)
Q Consensus 293 I~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~ 327 (549)
|+||+||+.||+++||++|||+|+||++|++||+.
T Consensus 92 IrnDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~ 126 (139)
T PLN00156 92 VRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVG 126 (139)
T ss_pred ccCcHHHHHHHCCCccCCCccCCCccHhhcccccc
Confidence 99999999999999999999999999999999875
No 5
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=1.5e-41 Score=308.08 Aligned_cols=120 Identities=55% Similarity=0.805 Sum_probs=114.6
Q ss_pred cccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCccc
Q psy7393 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWW 428 (549)
Q Consensus 349 msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~ 428 (549)
|||+||+++.++|++|+|+|||||||||||||+|++++|+.||+++||||||||||||++||||||+|+|+|+|++|
T Consensus 1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~R--- 77 (129)
T PLN00153 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNR--- 77 (129)
T ss_pred CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 89999977777789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhcc
Q psy7393 429 CLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAT 478 (549)
Q Consensus 429 ~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t 478 (549)
|+|+|+++||+||+|||.+++ +|+|++|||+||||+.++++++
T Consensus 78 -ItPrHi~lAI~nDeEL~~Ll~------~vTIa~GGV~P~i~~~l~~kk~ 120 (129)
T PLN00153 78 -IVPRHIQLAIRNDEELGKLLG------EVTIASGGVLPNIHAVLLPKKT 120 (129)
T ss_pred -cChHHHHhhccCcHHHHHHHC------CCccCCCccCCCcchhhcCccc
Confidence 999999999999999999999 4677789999999999999886
No 6
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=1.8e-41 Score=308.54 Aligned_cols=108 Identities=50% Similarity=0.878 Sum_probs=103.0
Q ss_pred CccCC-ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhh--cCCcccchhhhhhhhc
Q psy7393 218 AKSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIR 294 (549)
Q Consensus 218 ~k~~S-rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~--~kkkRITPrHI~lAI~ 294 (549)
++..+ ||+|||||||||||+|||++++|+.||+++||||||||||||++||||||+|+|++ ++++||+|+||++||+
T Consensus 12 ~~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 12 SKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred cccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 34455 99999999999999999999999999999999999999999999999999999965 7889999999999999
Q ss_pred CcHHHHhhhcCceeccccccCCccccccccc
Q psy7393 295 NDEELNKLLSGVTIAQGGVLPNIQAGLKAEF 325 (549)
Q Consensus 295 NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK 325 (549)
||+|||+||+++||++|||+|+||++|++||
T Consensus 92 NDeEL~~Ll~~vTIa~GGVlP~i~~~l~~k~ 122 (134)
T PTZ00252 92 HDDDLGSLLKNVTLSRGGVMPSLNKALAKKH 122 (134)
T ss_pred ChHHHHHHHcCCccCCCccCCCccHhhcccc
Confidence 9999999999999999999999999999984
No 7
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=1.1e-40 Score=303.45 Aligned_cols=121 Identities=57% Similarity=0.845 Sum_probs=114.7
Q ss_pred cccCCC--CCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCc
Q psy7393 349 MSGRGK--GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHS 426 (549)
Q Consensus 349 msg~gK--~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~ 426 (549)
|||+|| +++.++|+.|+|+|||||||||||||+|++++|+.||+++||||||||||||++||||||+|+|+|++++|
T Consensus 1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~R- 79 (132)
T PLN00157 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSR- 79 (132)
T ss_pred CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCcc-
Confidence 889987 55667789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 427 WWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 427 ~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+|+++||+||+||+.+++ +++|++|||+||||+.+|++++.
T Consensus 80 ---ItPrHi~lAI~nDeEL~~Ll~------~vtIa~GGV~P~i~~~ll~kk~~ 123 (132)
T PLN00157 80 ---IVPRHIQLAVRNDEELSKLLG------GVTIAAGGVLPNIHSVLLPKKSG 123 (132)
T ss_pred ---ccHHHHhhcccCcHHHHHHHc------CceecCCccCCCcchhhcCCCCC
Confidence 999999999999999999999 57788899999999999999875
No 8
>KOG1756|consensus
Probab=100.00 E-value=1.5e-40 Score=299.33 Aligned_cols=122 Identities=82% Similarity=1.153 Sum_probs=114.8
Q ss_pred ccCCCCCCCC---CCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy7393 207 MSGRGKGGKA---KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 283 (549)
Q Consensus 207 MSgrgk~gk~---~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkR 283 (549)
||+++++||. ++++.++|.|+|||||||||+|+||+++|++||+.+|||||+||||||++||+|+|+|+|+++++.|
T Consensus 1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r 80 (131)
T KOG1756|consen 1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 80 (131)
T ss_pred CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence 6777775543 3566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 284 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 284 ITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
|+|+||++||+||+||++|+++|||++|||+|+||+.+++||+.+
T Consensus 81 i~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~ 125 (131)
T KOG1756|consen 81 ITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAILLPKKTGK 125 (131)
T ss_pred cChHHHHHHHhCcHHHHHHhccceeccCCcccccchhhccccccc
Confidence 999999999999999999999999999999999999999999765
No 9
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=2.6e-40 Score=301.80 Aligned_cols=111 Identities=61% Similarity=0.872 Sum_probs=106.1
Q ss_pred CCCccCCccccccccccchhhhhhhhcCC-cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 216 AKAKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 216 ~~~k~~SrSsRAGLqFPVsRI~RlLke~~-ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+++..|||+||||||||+||+|+||+++ |++||+++|||||+||||||++||||||+|+|++++++||+|+||++||+
T Consensus 24 ~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 24 DKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred CCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 45578999999999999999999999997 67899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393 295 NDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI 327 (549)
Q Consensus 295 NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~ 327 (549)
||+||++||+ +||++|||+|+||++|++||++
T Consensus 104 nDeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~ 135 (136)
T PLN00154 104 GDEELDTLIK-GTIAGGGVIPHIHKSLINKSTK 135 (136)
T ss_pred CcHHHHHHhc-CCccCCccCCCcchhhcccccC
Confidence 9999999997 6999999999999999999865
No 10
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=3.6e-40 Score=291.04 Aligned_cols=105 Identities=84% Similarity=1.211 Sum_probs=103.5
Q ss_pred CccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHh
Q psy7393 222 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 301 (549)
Q Consensus 222 SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~ 301 (549)
|||+||||||||+||+||||+++|++||+++|+|||+||||||++||||+|+|+|++++++||||+||++||+||+|||+
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceeccccccCCcccccccccc
Q psy7393 302 LLSGVTIAQGGVLPNIQAGLKAEFS 326 (549)
Q Consensus 302 Lfk~vtIs~GGVlP~I~~~ll~kK~ 326 (549)
||+++||++|||+|+||+++++||+
T Consensus 81 L~~~vti~~ggv~p~i~~~l~~~~~ 105 (106)
T smart00414 81 LLKGVTIAQGGVLPNIHKVLLPKKT 105 (106)
T ss_pred HHcCcccCCCccCCCcchhhcccCC
Confidence 9999999999999999999999986
No 11
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=1.1e-39 Score=298.73 Aligned_cols=118 Identities=55% Similarity=0.802 Sum_probs=111.1
Q ss_pred CCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccC
Q psy7393 352 RGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLT 431 (549)
Q Consensus 352 ~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~IT 431 (549)
.|+|+++++|++|+|+||||||||+||||+|++++|+.||+++||||||||||||++||||||+|+|+|++++| |+
T Consensus 9 ~~~g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~R----It 84 (139)
T PLN00156 9 GGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNR----IV 84 (139)
T ss_pred CCCCcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----Cc
Confidence 34566677789999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred hHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 432 AETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 432 PehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+++||+||+|||.+++ +++|++|||+||||+.++++++.
T Consensus 85 PrHi~lAIrnDeEL~~Ll~------~vTIa~GGV~P~i~~~l~~kk~~ 126 (139)
T PLN00156 85 PRHIQLAVRNDEELSKLLG------SVTIAAGGVLPNIHQTLLPKKVG 126 (139)
T ss_pred HHHHHhhccCcHHHHHHHC------CCccCCCccCCCccHhhcccccc
Confidence 9999999999999999999 46777799999999999999986
No 12
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=2.8e-39 Score=295.08 Aligned_cols=110 Identities=55% Similarity=0.808 Sum_probs=105.4
Q ss_pred CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393 359 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA 438 (549)
Q Consensus 359 k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA 438 (549)
++|+.|+|+||||||||+||||+|++++|+.||+++||||||||||||++||||||+|+|+|++++| |||+||++|
T Consensus 14 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R----ItPrHi~lA 89 (134)
T PTZ00017 14 KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR----ITPRHIQLA 89 (134)
T ss_pred CcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe----ecHHHHHhh
Confidence 5578999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HhCCcccccccCCCCcccceeecCCccccccchhhhhhcc
Q psy7393 439 ALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAT 478 (549)
Q Consensus 439 I~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t 478 (549)
|+||+|||.+++ +++|++|||+||||++++++++
T Consensus 90 I~nDeEL~~Ll~------~vtIa~GGV~P~i~~~l~~k~~ 123 (134)
T PTZ00017 90 IRNDEELNKLLA------GVTIASGGVLPNIHKVLLPKKS 123 (134)
T ss_pred ccCcHHHHHHHc------CCcccCCccCCCccHhhccCCC
Confidence 999999999998 4677889999999999999887
No 13
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=4.1e-39 Score=287.88 Aligned_cols=112 Identities=79% Similarity=1.169 Sum_probs=108.5
Q ss_pred CCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhh
Q psy7393 214 GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 293 (549)
Q Consensus 214 gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI 293 (549)
+|++++.+|||+||||+|||+||+|||++++|+.||+++|+|||+||||||++||||+|+|.|+++++++|+|+||++||
T Consensus 4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi 83 (115)
T cd00074 4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAV 83 (115)
T ss_pred CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 36667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHhhhcCceeccccccCCccccccccc
Q psy7393 294 RNDEELNKLLSGVTIAQGGVLPNIQAGLKAEF 325 (549)
Q Consensus 294 ~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK 325 (549)
+||+||++||+++||++|||+|+||++|++||
T Consensus 84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 84 RNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred hccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 99999999999999999999999999999886
No 14
>KOG1756|consensus
Probab=100.00 E-value=7.1e-39 Score=288.50 Aligned_cols=122 Identities=61% Similarity=0.873 Sum_probs=114.2
Q ss_pred cccCCCCCCC---CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy7393 349 MSGRGKGGKT---KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425 (549)
Q Consensus 349 msg~gK~gK~---k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR 425 (549)
|++++|+||. ++++.++|.|+|||||||||+|+||+++|++||+++||||++||||||++||||+|+|+|+|++|+|
T Consensus 1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r 80 (131)
T KOG1756|consen 1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 80 (131)
T ss_pred CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence 6777777765 3456888999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhcccc
Q psy7393 426 SWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGL 480 (549)
Q Consensus 426 ~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~l 480 (549)
|+|+|+++||+||+||+.+++ +|+|++|||+|+|++.+|+|+++-
T Consensus 81 ----i~PrH~~lAI~NDeEL~~lL~------~vtIa~GGvlPnI~~~lLpKk~~~ 125 (131)
T KOG1756|consen 81 ----ITPRHLQLAIRNDEELNKLLG------KVTIAQGGVLPNIQAILLPKKTGK 125 (131)
T ss_pred ----cChHHHHHHHhCcHHHHHHhc------cceeccCCcccccchhhccccccc
Confidence 999999999999999999999 689999999999999999998864
No 15
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=1.7e-38 Score=289.10 Aligned_cols=106 Identities=42% Similarity=0.595 Sum_probs=99.6
Q ss_pred cCCC-cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhh--cCCCCcccccChHHHHH
Q psy7393 361 KSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTHSWWCLTAETVQG 437 (549)
Q Consensus 361 k~~S-rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd--~kkkR~~~~ITPehLql 437 (549)
|..+ ||+|||||||||||||+|++++|+.||+++||||||||||||++||||||||+|+| +|++| |+|+||++
T Consensus 13 ~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~R----ItPrHi~l 88 (134)
T PTZ00252 13 KSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKR----LTPRTVTL 88 (134)
T ss_pred ccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccHHHHHh
Confidence 4555 99999999999999999999999999999999999999999999999999999976 67776 99999999
Q ss_pred HHhCCcccccccCCCCcccceeecCCccccccchhhhhh
Q psy7393 438 AALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLEN 476 (549)
Q Consensus 438 AI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~ 476 (549)
||+||+|||.++++ ++|++|||+||||++++++
T Consensus 89 AIrNDeEL~~Ll~~------vTIa~GGVlP~i~~~l~~k 121 (134)
T PTZ00252 89 AVRHDDDLGSLLKN------VTLSRGGVMPSLNKALAKK 121 (134)
T ss_pred hccChHHHHHHHcC------CccCCCccCCCccHhhccc
Confidence 99999999999984 6777799999999999998
No 16
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=2.6e-38 Score=288.66 Aligned_cols=121 Identities=45% Similarity=0.579 Sum_probs=108.8
Q ss_pred ccccCCC------CCCCCCcCCCcCcccccccchhhhhHhhhcCC-ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhh
Q psy7393 348 TMSGRGK------GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 420 (549)
Q Consensus 348 ~msg~gK------~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~-ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd 420 (549)
+|+|+++ .++.++|+.|||+||||||||+||||+||+++ |++||+++||||||||||||++||||||||+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d 87 (136)
T PLN00154 8 GLLAAKTTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKD 87 (136)
T ss_pred ccccCCcCCcccccccCCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666542 12345678999999999999999999999997 5789999999999999999999999999999999
Q ss_pred cCCCCcccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 421 NKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 421 ~kkkR~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
+|++| |||+||++||+||+||+.+++ ++|++|||+||||+++++++++
T Consensus 88 ~kk~R----ItPrHi~lAIrnDeEL~~Ll~-------~TIa~GGVlP~i~~~l~~k~~~ 135 (136)
T PLN00154 88 LKVKR----ITPRHLQLAIRGDEELDTLIK-------GTIAGGGVIPHIHKSLINKSTK 135 (136)
T ss_pred hCCce----ecHHHhhhhccCcHHHHHHhc-------CCccCCccCCCcchhhcccccC
Confidence 99998 999999999999999999996 3677799999999999999874
No 17
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-38 Score=281.56 Aligned_cols=120 Identities=76% Similarity=1.104 Sum_probs=110.8
Q ss_pred CCCCC--CCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhh
Q psy7393 211 GKGGK--AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288 (549)
Q Consensus 211 gk~gk--~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrH 288 (549)
||++| .-+...|+|.++||+|||+||+|+|++++|.+||++.|+||++||||||++||+|+|+|+|++++++||+|+|
T Consensus 5 GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrH 84 (132)
T COG5262 5 GKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRH 84 (132)
T ss_pred CcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHH
Confidence 45555 2234579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHhhhcCceeccccccCCccccccccccccee
Q psy7393 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITIS 330 (549)
Q Consensus 289 I~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~~s 330 (549)
|++||+||+||++|+++|||++|||+|||++.+++|..++.+
T Consensus 85 lqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK~s 126 (132)
T COG5262 85 LQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKKGS 126 (132)
T ss_pred HHHHhcCcHHHHHHhhhheeecCCcccccChhhhhhhhccCC
Confidence 999999999999999999999999999999999997665544
No 18
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=3.1e-37 Score=272.35 Aligned_cols=106 Identities=61% Similarity=0.866 Sum_probs=102.0
Q ss_pred CcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393 364 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 364 SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe 443 (549)
|||+|||||||||||||+||+++|+.||+++|+||||||||||++||||||+|+|+|+|++| |||+|+++||+||+
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~r----Itp~hi~lAi~nD~ 76 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRR----ITPRHLQLAIRNDE 76 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cchHHHhhhccCCH
Confidence 68999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred ccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 444 RVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 444 EL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|||.++++ ++|++|||+||||++++++++|
T Consensus 77 EL~~L~~~------vti~~ggv~p~i~~~l~~~~~~ 106 (106)
T smart00414 77 ELNKLLKG------VTIAQGGVLPNIHKVLLPKKTG 106 (106)
T ss_pred HHHHHHcC------cccCCCccCCCcchhhcccCCC
Confidence 99999994 7778899999999999999875
No 19
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-36 Score=271.01 Aligned_cols=118 Identities=53% Similarity=0.784 Sum_probs=109.3
Q ss_pred CCCCCC-CCC-cCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccc
Q psy7393 352 RGKGGK-TKT-KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWC 429 (549)
Q Consensus 352 ~gK~gK-~k~-k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ 429 (549)
.||||| ... ...++|.++||+||||||+|+||+++|.+||+++|+||++||||||++||||+|+|+|+|+|+||
T Consensus 4 ~GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkr---- 79 (132)
T COG5262 4 GGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKR---- 79 (132)
T ss_pred CCcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcce----
Confidence 457777 333 35899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 430 LTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 430 ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+|+|+||+||+||+.+.+ .|+|++|||.|||.+.+|.+++.
T Consensus 80 i~PrHlqlAIrnD~EL~~l~~------~~tIa~GGvlp~I~~~ll~k~sk 123 (132)
T COG5262 80 IIPRHLQLAIRNDEELNKLLG------DVTIAQGGVLPNINPGLLPKSSK 123 (132)
T ss_pred echHHHHHHhcCcHHHHHHhh------hheeecCCcccccChhhhhhhhc
Confidence 999999999999999999998 59999999999999999988753
No 20
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=3e-36 Score=269.49 Aligned_cols=112 Identities=59% Similarity=0.851 Sum_probs=106.1
Q ss_pred CCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHH
Q psy7393 356 GKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETV 435 (549)
Q Consensus 356 gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehL 435 (549)
||+++|++|+|+|+||||||+||+|+||+++|+.||+++|+|||+||||||++||||+|+|+|++++++| |+|+||
T Consensus 4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~kr----Itp~hi 79 (115)
T cd00074 4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKR----ITPRHL 79 (115)
T ss_pred CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----EcHHHH
Confidence 4777789999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred HHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhc
Q psy7393 436 QGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENA 477 (549)
Q Consensus 436 qlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~ 477 (549)
++||+||+|||.+|++ ++|++|||+||||+++++++
T Consensus 80 ~lAi~nD~EL~~L~~~------vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 80 QLAVRNDEELNKLLKG------VTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred HHHHhccHHHHHHHcC------CcccCCccCCCcchhhcCCC
Confidence 9999999999999994 67777999999999998764
No 21
>KOG1757|consensus
Probab=99.97 E-value=2e-33 Score=249.01 Aligned_cols=111 Identities=61% Similarity=0.883 Sum_probs=103.7
Q ss_pred CCccCCccccccccccchhhhhhhhcCCc-ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 217 KAKSKTRSSRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 217 ~~k~~SrSsRAGLqFPVsRI~RlLke~~y-a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
+.+.+|+|+|+||||||+||||+|+.... ..||++.++||.+|+|||||+|+||||+|++++.+.+||||+|+|+||+.
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRG 96 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 96 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecC
Confidence 35678999999999999999999999654 47999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 296 DEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 296 DeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
|+||+.|++. ||++|||+||||++++.|+...
T Consensus 97 DeELDtLIk~-TiagGgViPhihk~l~~k~~~~ 128 (131)
T KOG1757|consen 97 DEELDTLIKA-TIAGGGVIPHIHKSLINKKGKK 128 (131)
T ss_pred cHHHHHHHHH-hhccCccccchHHHHhcccccc
Confidence 9999999966 8999999999999999887654
No 22
>KOG1757|consensus
Probab=99.97 E-value=7e-33 Score=245.52 Aligned_cols=109 Identities=47% Similarity=0.635 Sum_probs=101.9
Q ss_pred CCcCCCcCcccccccchhhhhHhhhcCCc-cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHH
Q psy7393 359 KTKSKTRSSRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQG 437 (549)
Q Consensus 359 k~k~~SrSsRAgLqFPVgRI~R~Lk~g~y-a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLql 437 (549)
+.+.+|+|+|+||||||+||||+||.... +.||+++|.||++|||||||+||||||||+++|.|.|| |||+|+|+
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKR----itprHlqL 92 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKR----ITPRHLQL 92 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeee----ccchhhee
Confidence 46789999999999999999999999654 58999999999999999999999999999999999998 99999999
Q ss_pred HHhCCcccccccCCCCcccceeecCCccccccchhhhhhcc
Q psy7393 438 AALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAT 478 (549)
Q Consensus 438 AI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t 478 (549)
||+.||||+.+++ .+|+||||+|||++.++-|++
T Consensus 93 AiRGDeELDtLIk-------~TiagGgViPhihk~l~~k~~ 126 (131)
T KOG1757|consen 93 AIRGDEELDTLIK-------ATIAGGGVIPHIHKSLINKKG 126 (131)
T ss_pred eecCcHHHHHHHH-------HhhccCccccchHHHHhcccc
Confidence 9999999999996 579999999999999887764
No 23
>PLN00155 histone H2A; Provisional
Probab=99.83 E-value=1.9e-21 Score=155.31 Aligned_cols=58 Identities=71% Similarity=1.185 Sum_probs=54.9
Q ss_pred cccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHH
Q psy7393 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406 (549)
Q Consensus 349 msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYL 406 (549)
|||+||+++.+++++|+|+||||||||+||||+|++++|+.||+++||||||||||||
T Consensus 1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 8899887776778899999999999999999999999999999999999999999997
No 24
>PLN00155 histone H2A; Provisional
Probab=99.80 E-value=3.3e-20 Score=148.26 Aligned_cols=58 Identities=71% Similarity=1.180 Sum_probs=54.0
Q ss_pred ccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHH
Q psy7393 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264 (549)
Q Consensus 207 MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYL 264 (549)
|||+|++++.+++.+|+|+||||||||+||+|+|++++|+.||+++||||||||||||
T Consensus 1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 8898876665667899999999999999999999999999999999999999999997
No 25
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.18 E-value=1.2e-11 Score=101.17 Aligned_cols=73 Identities=41% Similarity=0.607 Sum_probs=68.5
Q ss_pred cccccccccchhhhhhhhcCCccc-ccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 224 SSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 224 SsRAGLqFPVsRI~RlLke~~ya~-RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
+.+..+.||+.|+.|-+.++.+.. ||++.|.+||.+++||++.+|++.|++.|..+++++|+|+||+.|+++|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 457788999999999999988774 9999999999999999999999999999999999999999999999875
No 26
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.15 E-value=3.7e-11 Score=98.26 Aligned_cols=73 Identities=34% Similarity=0.447 Sum_probs=67.2
Q ss_pred CcccccccchhhhhHhhhcCCccc-cccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393 366 SSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF 442 (549)
Q Consensus 366 SsRAgLqFPVgRI~R~Lk~g~ya~-RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND 442 (549)
+.+..+.||+.|+.+-+..+.+.. ||++.|.+||.+++||++.+|+|.|++.|..+|+++ |+|+|++.|+++|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~t----I~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKT----ITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSE----EGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcE----ecHHHHHHHHhcC
Confidence 345778999999999999987774 999999999999999999999999999999999987 9999999999865
No 27
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=98.95 E-value=7.8e-10 Score=97.84 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=74.3
Q ss_pred cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCc
Q psy7393 228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV 306 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~v 306 (549)
.-.||++|++++|+-.....+|++.+||.....||+++.+|+.+++.+||..+.+|||.+||..|+.+|+.+++|-...
T Consensus 21 ktrFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~~~ 99 (113)
T COG5247 21 KTRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNME 99 (113)
T ss_pred hhcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999886433
No 28
>KOG1659|consensus
Probab=98.50 E-value=1e-07 Score=93.79 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=72.7
Q ss_pred cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393 228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf 303 (549)
.-.||++||+++||......+|...+||.+.-.||.++.+|+..++.+++..+.++++|+||..||.+|+.+++|-
T Consensus 11 ~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk 86 (224)
T KOG1659|consen 11 KTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLK 86 (224)
T ss_pred hccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHH
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999998875
No 29
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=98.44 E-value=2.2e-07 Score=82.57 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=70.8
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHG 450 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~g 450 (549)
.||++||+++|+-......|++.+||...-.||++..+|+.+++..|+....+| ||.++|..|+.+|+.++.+-.
T Consensus 23 rFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR----~t~e~lk~a~~sdekFdFL~~ 97 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKR----MTSEFLKRATESDEKFDFLKN 97 (113)
T ss_pred cCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchh----hHHHHHHHHHhhhHHHHHHHH
Confidence 499999999999988889999999999999999999999999999999888887 999999999999999888764
No 30
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.23 E-value=1.5e-06 Score=69.99 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=57.8
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhh
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 293 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI 293 (549)
.||.++|+|+||......+|+..|..+++-+.|.++.+|...|...|..++++.|+++||..||
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5999999999999867789999999999999999999999999999999999999999999885
No 31
>PLN00035 histone H4; Provisional
Probab=98.04 E-value=7.1e-06 Score=73.31 Aligned_cols=86 Identities=28% Similarity=0.353 Sum_probs=70.6
Q ss_pred cccCCCCCCC-------CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393 349 MSGRGKGGKT-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 421 (549)
Q Consensus 349 msg~gK~gK~-------k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~ 421 (549)
||++||+||. +.++..+.+-++ +|..-|.|+.+++. ..|||.++...+..+||.+..+|+.-|...|+..
T Consensus 1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA 77 (103)
T PLN00035 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888876653 222333444556 78889999999975 7899999999999999999999999999999988
Q ss_pred CCCCcccccChHHHHHHHhC
Q psy7393 422 KKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 422 kkkR~~~~ITPehLqlAI~N 441 (549)
++|. |+.++|.+|+..
T Consensus 78 ~RKT----V~~~DV~~Alkr 93 (103)
T PLN00035 78 RRKT----VTAMDVVYALKR 93 (103)
T ss_pred CCCc----CcHHHHHHHHHH
Confidence 8776 999999999864
No 32
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=97.92 E-value=2.4e-05 Score=63.04 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=55.9
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHH
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAA 439 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI 439 (549)
.||+++|+|++|...-..+|+.+|..+++-..|.+..++..-|...|..++++. |+++|+..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkt----i~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKT----ITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSE----E-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHC
Confidence 599999999999975567999999999999999999999999999999888776 9999999885
No 33
>KOG1659|consensus
Probab=97.89 E-value=1.7e-05 Score=78.41 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=70.3
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHG 450 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~g 450 (549)
.||++||+++|+...-..+|...+||.+.-.||.+..+|+..++.+++...-|+ ++|+|+..||.+|+.++.+-.
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt----~s~~hlkq~v~~~~~FdFLk~ 87 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKT----VSSSHLKQAVESDPKFDFLKE 87 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccc----cCHHHHHHHHhccchhHHHHH
Confidence 499999999999988889999999999999999999999999999999888777 999999999999999888764
No 34
>PLN00035 histone H4; Provisional
Probab=97.84 E-value=1.4e-05 Score=71.36 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=70.4
Q ss_pred ccCCCCCCCC----CCcc---CCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393 207 MSGRGKGGKA----KAKS---KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 279 (549)
Q Consensus 207 MSgrgk~gk~----~~k~---~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~ 279 (549)
|||+||++|. ..++ ..+.+-++ +|..-|.|+.+.+. ..|||..+-..+..+||.+..+|+.-|...|...
T Consensus 1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA 77 (103)
T PLN00035 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888885432 1122 23334455 77778999999976 7899999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhcC
Q psy7393 280 KKTRIIPRHLQLAIRN 295 (549)
Q Consensus 280 kkkRITPrHI~lAI~N 295 (549)
+++.|+.++|.+|++.
T Consensus 78 ~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 78 RRKTVTAMDVVYALKR 93 (103)
T ss_pred CCCcCcHHHHHHHHHH
Confidence 9999999999998763
No 35
>PTZ00015 histone H4; Provisional
Probab=97.36 E-value=0.00062 Score=60.95 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 363 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 363 ~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
..+.+-.| +|..-|.|+.+++. ..|||.++...+..+||.+..+|+.-|...|+..++|. |+.++|.+|+..
T Consensus 23 ~~r~~i~g--I~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKT----Vt~~DV~~AlKr 94 (102)
T PTZ00015 23 VLRDNIRG--ITKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKT----VTAMDVVYALKR 94 (102)
T ss_pred HHhhcccC--CCHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccHHHHHHHHHh
Confidence 34444556 55568999999963 78999999999999999999999999999999888776 999999999754
No 36
>PTZ00015 histone H4; Provisional
Probab=97.26 E-value=0.00041 Score=62.08 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=59.9
Q ss_pred ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 223 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 223 rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
+.+-.| +|..-|.|+.+.+. +.|||..+-..+..+||.+..+|+.-|...|...+++.|+.++|.+|++
T Consensus 25 r~~i~g--I~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 25 RDNIRG--ITKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALK 93 (102)
T ss_pred hhcccC--CCHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 344445 45556999999964 6899999999999999999999999999999999999999999999875
No 37
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=97.01 E-value=0.0012 Score=54.38 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=58.8
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+|..-|+|+.+.... .||+..+...|+-.+||...+|+.-|.+.++..++++++++||..|++
T Consensus 2 ~~p~~~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 4788889999999764 599999999999999999999999999999999999999999999864
No 38
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=96.76 E-value=0.004 Score=51.29 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=58.1
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.+|..-|.|+.+.+. ..||+..+...|+-.+||...||++-|.+.++..|+++ ++++||..|++
T Consensus 2 ~~p~~~i~ria~~~G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRkt----lt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLG-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTT----LTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe----ecHHHHHHHhC
Confidence 478889999999965 45999999999999999999999999999999999887 99999998863
No 39
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=96.50 E-value=0.0027 Score=55.86 Aligned_cols=66 Identities=30% Similarity=0.418 Sum_probs=59.6
Q ss_pred cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+-+|+.=|.|+||+.. ..||+.+|-..|.-++|-+..+|.+.|...|...|++.|++++|++|+.
T Consensus 17 ~~~Lp~apv~Ri~r~~~-~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 17 DLLLPKAPVRRILRKAG-AERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhcCchHHHHHHHHHh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 45677777999999943 4599999999999999999999999999999999999999999999975
No 40
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=96.40 E-value=0.004 Score=54.84 Aligned_cols=67 Identities=31% Similarity=0.333 Sum_probs=59.2
Q ss_pred ccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 370 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 370 gLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.+-+|+-=|.|++|+. -..||+++|...|.-++|-+..+|.|.|...|..-++|. |++++|++|+..
T Consensus 17 ~~~Lp~apv~Ri~r~~-~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKT----V~~~DI~la~~~ 83 (91)
T COG2036 17 DLLLPKAPVRRILRKA-GAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKT----VKAEDIKLALKR 83 (91)
T ss_pred hhhcCchHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----ecHHHHHHHHHH
Confidence 4567888899999994 345999999999999999999999999999999888776 999999999853
No 41
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=96.29 E-value=0.0082 Score=52.22 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=60.9
Q ss_pred cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
+.+-+| +|..-|.|+.+++. ..|||.++-.-+..++|.+..+|+.-|...|+..++|. |+++++.+|+..
T Consensus 8 ~~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKT----Vt~~DV~~alkr 77 (85)
T cd00076 8 RDNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKT----VTAMDVVYALKR 77 (85)
T ss_pred HHhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CcHHHHHHHHHH
Confidence 344455 66778999999975 78999999999999999999999999999999888886 999999999854
No 42
>KOG1657|consensus
Probab=95.92 E-value=0.0067 Score=61.41 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=72.6
Q ss_pred ccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcC
Q psy7393 227 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 305 (549)
Q Consensus 227 AGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~ 305 (549)
....||.+||+++||......-|+..|||.++-+.|++..|+-..+...+..++++.+.-.||..|+.+.+-+++|.-.
T Consensus 71 ~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~Di 149 (236)
T KOG1657|consen 71 KNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLRDI 149 (236)
T ss_pred hhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccceecc
Confidence 3567999999999999999999999999999999999999999999999999988888889999999999998888743
No 43
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=95.85 E-value=0.013 Score=51.02 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=61.0
Q ss_pred cccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 224 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 224 SsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
.+-+| +|..-|.|+.+.+. ..|||..+-.-+..+||.+..+|+.-|...|...+++.|++++|.+|++.
T Consensus 9 ~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 9 DNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred Hhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 34455 56667999999976 78999999999999999999999999999999999999999999998763
No 44
>smart00417 H4 Histone H4.
Probab=95.41 E-value=0.022 Score=48.45 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=56.8
Q ss_pred cccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393 224 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 292 (549)
Q Consensus 224 SsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA 292 (549)
.+-.| +|..-|.|+.+.+. +.|||..+-..+..+||.+..+|+..|...|...+++.|+.+++..|
T Consensus 9 d~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 9 DNIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred hhhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 34446 45556999999975 68999999999999999999999999999999999999999998654
No 45
>smart00417 H4 Histone H4.
Probab=95.33 E-value=0.026 Score=47.99 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=55.6
Q ss_pred cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHH
Q psy7393 365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQG 437 (549)
Q Consensus 365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLql 437 (549)
+.+-.| +|..-|.|+++++. ..|||.++...+..+||.+..+|+.-|...|+..++|. |+.+++..
T Consensus 8 ~d~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKT----V~~~DV~~ 73 (74)
T smart00417 8 RDNIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKT----VTAMDVVY 73 (74)
T ss_pred HhhhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccHHHhee
Confidence 334445 55668999999974 67999999999999999999999999999999888776 89888754
No 46
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=95.17 E-value=0.028 Score=56.63 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=69.8
Q ss_pred ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303 (549)
Q Consensus 229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf 303 (549)
+.+|..||+++||.....+-|++.|||.++-+-|-+++|+--.|--.|..|++..+.-.+|..||...+-+++|+
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence 459999999999999888899999999999999999999999998888888888889999999999999888887
No 47
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=94.76 E-value=0.098 Score=43.66 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=57.9
Q ss_pred chhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393 374 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 374 PVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe 443 (549)
+-..+..++++..-..|++.+|...|..+.|-+..+|++.|...|+..+++. |.++++++++....
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~t----v~~~Di~l~l~r~~ 68 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDT----LEVKDVQLHLERNW 68 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHhc
Confidence 3456788888876678999999999999999999999999999999988876 99999999987643
No 48
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=94.59 E-value=0.063 Score=44.83 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=57.3
Q ss_pred chhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 233 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 233 VsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
-..+..++++..-..|++..|...|..+.|-+..+|++.|...|+..|++.|.+++|++++..+
T Consensus 4 k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 4 KRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3457778888666689999999999999999999999999999999999999999999998765
No 49
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=94.53 E-value=0.071 Score=46.33 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=54.6
Q ss_pred ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcC---Ccccchhhhhhhhc
Q psy7393 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK---KTRIIPRHLQLAIR 294 (549)
Q Consensus 231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~k---kkRITPrHI~lAI~ 294 (549)
||-..++|++.. ...+.++....+.|+++-.-++.||+|.|...-...+ ...|.|+||+.|.+
T Consensus 17 f~k~~iKr~~~~-~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQS-VTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 777789999987 3458999999999999999999999999988865544 47899999999875
No 50
>KOG1657|consensus
Probab=93.72 E-value=0.1 Score=53.04 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=68.6
Q ss_pred cccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccc
Q psy7393 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDV 448 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L 448 (549)
....||++||+++||......-|.+.|||.++-..|++..|+-..+...+.+++++- +.=.|+..++.+.+-++.+
T Consensus 71 ~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrt----l~~sdia~av~~s~~fdFL 146 (236)
T KOG1657|consen 71 KNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRT----LQKSDIAAAVTQSETFDFL 146 (236)
T ss_pred hhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhccccccc----chHHHHHHHhccCCCccce
Confidence 456899999999999988888999999999999999999999888888888887774 5668888899988888877
Q ss_pred cCC
Q psy7393 449 HGG 451 (549)
Q Consensus 449 ~gg 451 (549)
.--
T Consensus 147 ~Di 149 (236)
T KOG1657|consen 147 RDI 149 (236)
T ss_pred ecc
Confidence 753
No 51
>smart00427 H2B Histone H2B.
Probab=92.82 E-value=0.17 Score=44.66 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=53.7
Q ss_pred hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.|+|.||+-....-|++.|.-.|...+..+...|-.-|..-++.++++.|++++|+.|++
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 689999997777788899998899999999999998998989999999999999999987
No 52
>PLN00158 histone H2B; Provisional
Probab=92.11 E-value=0.24 Score=45.67 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=54.6
Q ss_pred hhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 234 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 234 sRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
..|+|.|++-....-|++.|.-.|...+..++..|...|...|+-+++..|++++||.||+
T Consensus 31 ~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 31 IYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 4799999997777788888988899999999999998999999999999999999999987
No 53
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=90.95 E-value=0.22 Score=43.91 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=46.0
Q ss_pred ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 294 (549)
Q Consensus 231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~ 294 (549)
||=+.|+|++..-.-.+-|+....+.++++--.++.||+|.|....... ....|.|.||..|.+
T Consensus 24 ~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 24 FNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp --HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 7777899999993322799999999999999999999999998886543 345899999998864
No 54
>PTZ00463 histone H2B; Provisional
Probab=90.67 E-value=0.42 Score=44.15 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=52.7
Q ss_pred hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
+|++.|++-....-|++.|.-.|...+.-++..|-..|...|+-+++..|++++||.|++
T Consensus 33 YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 33 YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 699999997777788888888888888888888888888888889999999999999987
No 55
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.66 E-value=0.58 Score=49.48 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=58.8
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHH--hCCcccccccCCCCcccceeecCCcc
Q psy7393 388 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAA--LTFERVDDVHGGDGLSLGVLGVGDGV 465 (549)
Q Consensus 388 a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI--~NDeEL~~L~gg~s~Sl~~li~ggGV 465 (549)
..|++.+|...|+..+||-..+|++.|.+.++..|+++ ++++||..|+ .|.+.+.......++...+...+|+.
T Consensus 14 i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~----l~~~Di~~Al~~~n~eplyG~~~~~~~~~~~~~~~~~~ 89 (343)
T cd08050 14 IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRK----LTTSDVNHALRLRNVEPLYGFSSSEPLPFRVSTGGGQE 89 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----CCHHHHHHHHHHhCCCcccCCCCCccccceeccCCCce
Confidence 56999999999999999999999999999999999987 9999999997 44454444443344433333444444
Q ss_pred cccc
Q psy7393 466 ADHV 469 (549)
Q Consensus 466 ~p~I 469 (549)
+-++
T Consensus 90 l~~~ 93 (343)
T cd08050 90 LYYV 93 (343)
T ss_pred EeeC
Confidence 4443
No 56
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=90.57 E-value=0.74 Score=42.05 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=53.6
Q ss_pred hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
-|+++|++. -..+++..++..|.-.++-.+.+|+.-|...|+..+++. |+.++|.+||..
T Consensus 6 ~v~~iLk~~-Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~t----V~~eDV~lAi~~ 65 (117)
T cd07979 6 VIAAILKSM-GITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKAN----IDADDVKLAIQS 65 (117)
T ss_pred HHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHH
Confidence 588999984 256999999999999999999999999999999888876 999999999976
No 57
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=90.35 E-value=0.33 Score=49.14 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=63.4
Q ss_pred cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccccc
Q psy7393 371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVH 449 (549)
Q Consensus 371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~ 449 (549)
+.+|..||++.||...-..=|++.|||.+|-+-|-+++|+--.|--.|+.||+.. +.-.+|.-|+..-+-++.++
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRt----LQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRT----LQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhH----HHHHHHHHHHHHHHHHhHHh
Confidence 4589999999999876677899999999999999999999888977788777664 67788888988877666655
No 58
>PLN00158 histone H2B; Provisional
Probab=90.27 E-value=1 Score=41.67 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=51.5
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.|.+ .|++.||.-.....|++.|--.+...+..+...|-.-|...++.++++. |++++||-|++-
T Consensus 28 sy~~-YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~T----ltsrEIqtAvrL 92 (116)
T PLN00158 28 TYKI-YIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPT----VTSREIQTAVRL 92 (116)
T ss_pred cHHH-HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc----CCHHHHHHHHHH
Confidence 3443 7999999866566777777777888888888888888888888887775 999999999864
No 59
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=90.19 E-value=0.48 Score=43.27 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=54.4
Q ss_pred hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
-|+++|++.. ..+++..++..|.-.++-.+.+|+.-|...|+..+++.|+.++|++||..-
T Consensus 6 ~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r 66 (117)
T cd07979 6 VIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSR 66 (117)
T ss_pred HHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4788999843 458999999999999999999999999999999999999999999999754
No 60
>PTZ00463 histone H2B; Provisional
Probab=89.80 E-value=1.2 Score=41.28 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=47.9
Q ss_pred cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
|.+ .|++.||.-....-|+..|--.+...+.=+...|-..|...|+.+++.. |++++||-|++-
T Consensus 30 y~~-YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~T----ltsrEIQtAvrL 93 (117)
T PTZ00463 30 YGL-YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDT----LSSREIQTAIRL 93 (117)
T ss_pred HHH-HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CCHHHHHHHHhh
Confidence 443 6999999865556777777666666666666666667777778777776 999999999864
No 61
>KOG3219|consensus
Probab=89.38 E-value=0.28 Score=48.69 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=55.3
Q ss_pred cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~ 294 (549)
.--||=+.|+|+|..-. .+-|+..+.|+++++=.-++-||+|.|..+.... ....+.|.||+.|.+
T Consensus 110 rs~f~Ka~iKkL~~~it-g~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~r 176 (195)
T KOG3219|consen 110 RSAFPKAQIKKLMSSIT-GQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYR 176 (195)
T ss_pred HhcCCHHHHHHHHHHHh-CCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 34599999999999943 3449999999999999999999999998885443 456799999998875
No 62
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=89.34 E-value=0.66 Score=38.77 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=46.4
Q ss_pred ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
||..-|+.+-..-.. ..++..+.-+|+-=+||-..||+.-|.+.++..+++++|+.||+.|++
T Consensus 4 ~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 4 FSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp --HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 555555555444332 357888999999999999999999999999999999999999999874
No 63
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.78 E-value=0.48 Score=50.10 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=51.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc--CcHHHHhh
Q psy7393 246 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEELNKL 302 (549)
Q Consensus 246 a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~--NDeEL~~L 302 (549)
..|++..|...|+..+||...+|++.|.+.++..|+++++++||+.|++ |.+.+...
T Consensus 14 i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~ 72 (343)
T cd08050 14 IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGF 72 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCC
Confidence 4599999999999999999999999999999999999999999999977 55555544
No 64
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=88.18 E-value=1.8 Score=37.68 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=53.3
Q ss_pred cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
||-..|+|++..- ..+.++.+..+.++++-.-++.||.|.|..+-....... ..-|.|+||+-|.+
T Consensus 17 f~k~~iKr~~~~~-~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~-~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQSV-TGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEAN-TGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCcHHHHHHHH
Confidence 7777899998873 458999999999999999999999999999876544310 01499999999875
No 65
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=88.16 E-value=0.99 Score=39.87 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=46.7
Q ss_pred cchhhhhHhhhcCCcc-ccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 373 FPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 373 FPVgRI~R~Lk~g~ya-~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
||=..|++++..- .. +-|+....+.++++-..+..||.|.|-.+........ .|.|.|+.-|.+
T Consensus 24 ~~k~~ikkli~~~-~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~---pl~P~hlreA~r 88 (90)
T PF04719_consen 24 FNKAAIKKLINQV-LGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETG---PLQPDHLREAYR 88 (90)
T ss_dssp --HHHHHHHHHHH-HS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--S---S--HHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHHHHHHH
Confidence 7778899999983 34 7899999999999999999999999999877555442 599999998864
No 66
>KOG3219|consensus
Probab=86.76 E-value=0.87 Score=45.33 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=56.8
Q ss_pred cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393 371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF 442 (549)
Q Consensus 371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND 442 (549)
-.||-+.|++++..- ..+-|+..+.|.++++-.-++.||.|.|..+....+... -+-|.||..|.+..
T Consensus 111 s~f~Ka~iKkL~~~i-tg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~---PLqP~HIREA~rrL 178 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSI-TGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESG---PLQPKHIREAYRRL 178 (195)
T ss_pred hcCCHHHHHHHHHHH-hCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCC---CCCcHHHHHHHHHH
Confidence 459999999999984 233489999999999999999999999999887555443 59999999998653
No 67
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=86.47 E-value=2.5 Score=35.36 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=46.5
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.||..-|+.+-..-.. ..++..+.-+||-=+||-..||++-|.+..+..|+++ +|+.||..|++
T Consensus 3 ~~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~----Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTK----LTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS----B-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHhC
Confidence 3566666655555322 3578899999999999999999999999999999997 99999999864
No 68
>smart00427 H2B Histone H2B.
Probab=85.17 E-value=2.7 Score=37.22 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=49.4
Q ss_pred hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.|+|.||.-....-|++.|--.+...+..+...|-.-|..-++.+||+. |++++||-|++-
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~T----ltsreIqtAvrl 66 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKST----LSSREIQTAVRL 66 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc----CCHHHHHHHHHH
Confidence 5889999865556778888777888888888888888888888887775 999999999864
No 69
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=82.60 E-value=3.5 Score=34.99 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=47.3
Q ss_pred cchhhhhhhhcC--CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-cchhhhhhh
Q psy7393 232 PVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR-IIPRHLQLA 292 (549)
Q Consensus 232 PVsRI~RlLke~--~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkR-ITPrHI~lA 292 (549)
|..-|.|+|+.. ...-||+..|--.++..|+-++.|-+-+|...|++.+... |.++||+..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 344567777752 2446999999999999999999999999999999998888 999999863
No 70
>smart00428 H3 Histone H3.
Probab=80.99 E-value=3.5 Score=37.43 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=54.8
Q ss_pred ccccchhhhhHhhhcC--Cc----cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 370 GLQFPVGRIHRLLRKG--NY----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 370 gLqFPVgRI~R~Lk~g--~y----a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
+|-+|-.-+.|+.++- .+ ..|++++|...|-...|....+++|-|...|...|++. |+|+++++|.+
T Consensus 27 ~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvT----l~~kDi~La~r 99 (105)
T smart00428 27 DLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVT----IMPKDIQLARR 99 (105)
T ss_pred ccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----CcHhhHHHHHH
Confidence 5667766677777652 22 35999999999999999999999999999888888776 89999999853
No 71
>smart00428 H3 Histone H3.
Probab=80.01 E-value=2.5 Score=38.39 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=55.7
Q ss_pred cccccchhhhhhhhcC--Cc----ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKG--NY----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~--~y----a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
+|-+|-.-|.|+.++- .+ ..|++++|...|-.+.|....++.|-|..-|...|+..|+|+++++|.+
T Consensus 27 ~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 27 DLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred ccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 5667766677776661 12 3599999999999999999999999998889888999999999998853
No 72
>KOG1744|consensus
Probab=79.65 E-value=6.6 Score=36.96 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=48.8
Q ss_pred cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
...++| +|.|++-...--|+..|.-.+-+.+--+...|...|+..|+-+++..|+.++|+.|++
T Consensus 38 ~~s~yv---~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 38 SYSEYV---YKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred ceeeeh---hhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 444554 5567764433447777777777777777888888899999999999999999999876
No 73
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=79.50 E-value=3.6 Score=34.57 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=50.2
Q ss_pred hhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 236 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 236 I~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
|.++++... ..+++.+|.-.|+-++|-...+|.+.+-+.|...+++..++.+|.+|+.+
T Consensus 12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345666633 35999999999999999999999999999998889999999999998754
No 74
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=73.88 E-value=8.1 Score=33.16 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH---hhhcCCcccchhhhhhhhcCcHHH
Q psy7393 251 AGAPVYLAAVMEYLAAEVLELAGNA---ARDNKKTRIIPRHLQLAIRNDEEL 299 (549)
Q Consensus 251 ssApVYLAAVLEYLtaEILELAGn~---Ar~~kkkRITPrHI~lAI~NDeEL 299 (549)
.-+|-|++|+.|-....+-.+|..- |+.-|++.|++.++.+..+.++.|
T Consensus 25 ~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 25 EVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 3578899999999888888887544 677799999999999999999875
No 75
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=71.71 E-value=14 Score=31.10 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=48.8
Q ss_pred hhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 378 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 378 I~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
|.++|++-. ..+++.+|--.|+-++|-...+|.+.+-+.|...+++. .++.++.+|+.+
T Consensus 12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~----~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTE----PNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHH
Confidence 445677633 46999999999999999888999999999998877775 799999999765
No 76
>KOG0871|consensus
Probab=69.19 E-value=7.6 Score=37.53 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=50.3
Q ss_pred cccccccchhhhhhhhcCCc-ccccCCChhH-HHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 226 RAGLQFPVGRIHRLLRKGNY-AERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 226 RAGLqFPVsRI~RlLke~~y-a~RIsssApV-YLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
.-.+.+|=.-|.+++++.-. ..||...|-- ++..|+||+ --|---|-..|....|+.|.|+|+..|+.|
T Consensus 8 dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI-~liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 8 DDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFI-NLISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred cccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHH-HHHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 44778898899999999765 5789876654 455666654 334444555566677899999999999875
No 77
>KOG3467|consensus
Probab=66.25 E-value=15 Score=32.77 Aligned_cols=85 Identities=31% Similarity=0.395 Sum_probs=55.0
Q ss_pred cccCCCCCCC-------CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393 349 MSGRGKGGKT-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 421 (549)
Q Consensus 349 msg~gK~gK~-------k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~ 421 (549)
||+++|++|. +.++.-+.+-+|++-| -|.|+-+.+. ..||+...---.--|+.-+..+++-.|...+..-
T Consensus 1 Ms~r~~g~KG~~KG~AKrHRK~LsDnIqgitKp--aIRRlARr~G-VkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HA 77 (103)
T KOG3467|consen 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP--AIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCcCccccccccchHHHHHHHHHhhccccchH--HHHHHHHhcC-cchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5666655543 3333444556677777 5888888864 4588765444445555545567777787777777
Q ss_pred CCCCcccccChHHHHHHHh
Q psy7393 422 KKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 422 kkkR~~~~ITPehLqlAI~ 440 (549)
|+|. ||.-++-.+..
T Consensus 78 KRKT----vT~~dvv~~LK 92 (103)
T KOG3467|consen 78 KRKT----VTAMDVVYALK 92 (103)
T ss_pred hhce----eeHHHHHHHHH
Confidence 7665 89888877654
No 78
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=56.51 E-value=17 Score=30.48 Aligned_cols=61 Identities=15% Similarity=0.307 Sum_probs=47.5
Q ss_pred hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
++..++++-.-...+...+--.|.-+-+-++..|++.|...|+..+...+.+++|++.+..
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 4667777766677888999999999999999999999999999999999999999987654
No 79
>KOG0869|consensus
Probab=56.24 E-value=19 Score=35.15 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=47.9
Q ss_pred cccchhhhhhhhcCCc-ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 230 QFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 230 qFPVsRI~RlLke~~y-a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
-+|+.-|-|+||+.-. ..+|++.|--.+--|+--+++=|---|..-+...++|.|+-.+|-+|+.
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4899999999999654 3699999887655554444444444444556667889999999999985
No 80
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=52.83 E-value=43 Score=28.13 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=46.6
Q ss_pred hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
++..++++-.-..++...+.-.|.-+-+=++..|++.|+..|+..+... +.++++++....
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~t----le~~Dv~~~Ler 64 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSST----LEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE----E-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCHHHHHHHHHh
Confidence 5677788766677888999999999999999999999999999988775 899999987653
No 81
>KOG1744|consensus
Probab=52.08 E-value=58 Score=30.85 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=45.1
Q ss_pred cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
........++| .|.||.-...--|+..|--.+-+.+--+...|...|+..|+.+|+.. |+.+++|.|++-
T Consensus 33 ~~~~e~~s~yv---~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krst----isSreiqta~rL 102 (127)
T KOG1744|consen 33 TRRKESYSEYV---YKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRST----ISSREIQTAVRL 102 (127)
T ss_pred ccccCceeeeh---hhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCc----ccHHHHHHHHHH
Confidence 33344555554 44666632222355656555555555556667777888888888876 999999999854
No 82
>KOG3467|consensus
Probab=51.60 E-value=24 Score=31.56 Aligned_cols=84 Identities=29% Similarity=0.417 Sum_probs=54.3
Q ss_pred ccCCCCCCCCCCcc-------CCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393 207 MSGRGKGGKAKAKS-------KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 279 (549)
Q Consensus 207 MSgrgk~gk~~~k~-------~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~ 279 (549)
||++++++|.-.|. .-+.+-.|++-|. |.|+-+.+. ..||+...---.-.|+.-+..+++-.|...+...
T Consensus 1 Ms~r~~g~KG~~KG~AKrHRK~LsDnIqgitKpa--IRRlARr~G-VkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HA 77 (103)
T KOG3467|consen 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPA--IRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCcCccccccccchHHHHHHHHHhhccccchHH--HHHHHHhcC-cchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67776654432222 2233445666776 778888865 3577765444455666666677777787777777
Q ss_pred CCcccchhhhhhhh
Q psy7393 280 KKTRIIPRHLQLAI 293 (549)
Q Consensus 280 kkkRITPrHI~lAI 293 (549)
+++.||.-++-.++
T Consensus 78 KRKTvT~~dvv~~L 91 (103)
T KOG3467|consen 78 KRKTVTAMDVVYAL 91 (103)
T ss_pred hhceeeHHHHHHHH
Confidence 88999988887654
No 83
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=51.34 E-value=60 Score=27.59 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=44.5
Q ss_pred chhhhhHhhhcC--CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393 374 PVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA 438 (549)
Q Consensus 374 PVgRI~R~Lk~g--~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA 438 (549)
|-.-|.|+|+.. .-.-||+.+|---++..++-++.|-+-.|...|++.+... .|.++|++..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~---~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEG---FLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---EE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCCHHHHHHH
Confidence 334567777752 2346999999999999999999999999999888766542 2789999864
No 84
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=48.16 E-value=18 Score=39.58 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=42.1
Q ss_pred CCccCCccccccccccchhhhhhhhcC----Ccc-cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhh
Q psy7393 217 KAKSKTRSSRAGLQFPVGRIHRLLRKG----NYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288 (549)
Q Consensus 217 ~~k~~SrSsRAGLqFPVsRI~RlLke~----~ya-~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrH 288 (549)
++++.||-...+-.+|.+-|++++..- .|+ .||++.|.-.|.-|+|++...+-+=-.-+|+.-|+|.|.+.+
T Consensus 338 k~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 338 KQKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp --------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 456667766677789999888877652 333 699999999999999999999987767778888999998754
No 85
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=45.92 E-value=34 Score=30.26 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhh--cCCcccchhhhhhhhcCcHH
Q psy7393 261 MEYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIRNDEE 298 (549)
Q Consensus 261 LEYLtaEILELAGn~Ar~--~kkkRITPrHI~lAI~NDeE 298 (549)
=|+++..|.++.-+++.. .++.+|+++++..+|++|+.
T Consensus 30 E~iv~~~i~~l~~~a~~~A~~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 30 EDIVVEYIIELCHKAAEVAQRRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCHH
Confidence 344445555555444322 46778899999999999975
No 86
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=45.49 E-value=43 Score=28.78 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=43.9
Q ss_pred ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHH---HHhhcCCCCcccccChHHHHHHHhCCcc
Q psy7393 368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGN---AARDNKKTHSWWCLTAETVQGAALTFER 444 (549)
Q Consensus 368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGN---aAkd~kkkR~~~~ITPehLqlAI~NDeE 444 (549)
|+.|.+-|++|-.---. ...+ .-+|-|++|+.|-....+-.+|.. .|+.-|++. |+++++.+..+.++.
T Consensus 4 Kaal~~~v~ki~ee~~~---~~~~-~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~t----I~~dDV~Ll~Rrn~~ 75 (76)
T PF15630_consen 4 KAALWYTVGKIVEEEAK---EKGV-EVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRST----INMDDVKLLARRNPS 75 (76)
T ss_dssp HHHHHHHHHHHHHHCCC---CTTS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE----E-HHHHHHHTTT-HH
T ss_pred HHHHHHHHHHHHHHHHh---ccCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe----ecHHHHHHHhhcCCC
Confidence 34566666665432211 1111 247889999999888887777754 456666665 999999999998875
Q ss_pred c
Q psy7393 445 V 445 (549)
Q Consensus 445 L 445 (549)
|
T Consensus 76 L 76 (76)
T PF15630_consen 76 L 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 87
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=44.61 E-value=23 Score=31.18 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH---HhhhcCCcccchhhhhhhhcCcHHH
Q psy7393 258 AAVMEYLAAEVLELAGN---AARDNKKTRIIPRHLQLAIRNDEEL 299 (549)
Q Consensus 258 AAVLEYLtaEILELAGn---~Ar~~kkkRITPrHI~lAI~NDeEL 299 (549)
..+-|+++.+|.++.-+ .|...|.++|+++|+..++++|+.-
T Consensus 26 ~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~K 70 (93)
T PF02269_consen 26 DLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKK 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHH
Confidence 44555666666666654 4556677899999999999999753
No 88
>KOG0871|consensus
Probab=41.67 E-value=73 Score=31.03 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=47.5
Q ss_pred cccccchhhhhHhhhcCCc-cccccCch-hHHHHHHHHHHHHHHHHH-hHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393 369 AGLQFPVGRIHRLLRKGNY-AERVGAGA-PVYLAAVMEYLAAEVLEL-AGNAARDNKKTHSWWCLTAETVQGAALTF 442 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~y-a~RVsa~A-pVYLAAVLEYLtaEILEL-AGNaAkd~kkkR~~~~ITPehLqlAI~ND 442 (549)
-.+..|-.-|.+++++.-. ..||-..| -+++..++||+ .++-. |-.+|....||. |.|+|+..|..|.
T Consensus 9 de~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI--~liSsEAneic~~e~KKT----Ia~EHV~KALe~L 79 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFI--NLISSEANEICNKEAKKT----IAPEHVIKALENL 79 (156)
T ss_pred ccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHH--HHHHHHHHHHHhHHhccc----CCHHHHHHHHHHc
Confidence 5678898899999999654 56887655 45677778776 33333 334554444444 9999999998764
No 89
>PLN00163 histone H4; Provisional
Probab=38.41 E-value=12 Score=31.10 Aligned_cols=43 Identities=42% Similarity=0.727 Sum_probs=27.4
Q ss_pred cccCCCCCCC-------CCcCCCcCcccccccchhhhhHhhhcCCccccccCc
Q psy7393 349 MSGRGKGGKT-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAG 394 (549)
Q Consensus 349 msg~gK~gK~-------k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ 394 (549)
|+++||+||. +.++.-+.+-.+++-| -|.|+-+.+. ..|||..
T Consensus 1 m~g~gkggkglGkggaKRhrk~lrd~i~gItKp--aIrRLARRgG-VKRIs~~ 50 (59)
T PLN00163 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP--AIRRLARRGG-VKRISGL 50 (59)
T ss_pred CCCCCCCCCccCCccchhHHHHHHHhhcccchH--HHHHHHHhcC-ceeecch
Confidence 6677776552 2223344455677777 5999999875 4588764
No 90
>KOG0870|consensus
Probab=38.36 E-value=84 Score=31.12 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=48.6
Q ss_pred cccccchhhhhHhhhcCCcc---ccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKGNYA---ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~ya---~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.-|-||-+-|.|+.|+- .. --|+..|...++-.---++..+.--|.+.|+++++|. |++.++-.|+.
T Consensus 7 ~dl~lP~AiI~rlvke~-l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt----~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEV-LPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKT----ISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHh-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----ccHHHHHHHHH
Confidence 35789999999888873 22 3456666655554444455666778899999998886 89999988874
No 91
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=38.17 E-value=17 Score=27.25 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=25.7
Q ss_pred HHHHhhhcCCcccchhhhhhhhcCcH--HHHhhhcC
Q psy7393 272 AGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLSG 305 (549)
Q Consensus 272 AGn~Ar~~kkkRITPrHI~lAI~NDe--EL~~Lfk~ 305 (549)
|-+.|+..+...|+|+||-.|+-.++ ....+++.
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~ 36 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKK 36 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH
Confidence 44678888999999999999987765 66666654
No 92
>KOG0870|consensus
Probab=37.99 E-value=51 Score=32.56 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=51.0
Q ss_pred cccccchhhhhhhhcCC-c-ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKGN-Y-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~-y-a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
-|-||-+-|-|+.|+-- - .--|+..|...++-.-=-|+..+..-|.+.|++++++.|++.++-.|+.
T Consensus 8 dl~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 8 DLNLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HhhccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 46789888887777722 1 1356677777666666667777788899999999999999999988875
No 93
>KOG0869|consensus
Probab=36.86 E-value=91 Score=30.69 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=46.1
Q ss_pred ccchhhhhHhhhcCCc-cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 372 QFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~y-a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
-+|+.-|-|+||+.-. ..+|+.+|.-.+--++--+++=|---|-..|...|+|. |+-++|-+|+..
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKT----IngdDllwAm~t 98 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKT----INGDDLLWAMST 98 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCc----ccHHHHHHHHHH
Confidence 5899999999999643 46999999876554443333444444555555555555 999999999854
No 94
>KOG1142|consensus
Probab=29.45 E-value=71 Score=33.47 Aligned_cols=67 Identities=10% Similarity=0.220 Sum_probs=58.9
Q ss_pred ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcH
Q psy7393 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 297 (549)
Q Consensus 231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDe 297 (549)
.-.-+++.++++-.-...|...+--+|.-+-|-|+..|+..|..-|+..++..|-.++|++.+.++-
T Consensus 155 l~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~ 221 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNF 221 (258)
T ss_pred ccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccc
Confidence 4445788888886566788899999999999999999999999999999999999999999998873
No 95
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=29.20 E-value=70 Score=35.13 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=38.0
Q ss_pred CCcCCCcCcccccccchhhhhHhhhc----CCc-cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChH
Q psy7393 359 KTKSKTRSSRAGLQFPVGRIHRLLRK----GNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE 433 (549)
Q Consensus 359 k~k~~SrSsRAgLqFPVgRI~R~Lk~----g~y-a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPe 433 (549)
++++.+|-....-.+|-+-|++++.. +.| ..||++.|---|.-++||+...+-+=-.-+|++-++|. |.+.
T Consensus 338 k~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKT----Ides 413 (414)
T PF15511_consen 338 KQKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKT----IDES 413 (414)
T ss_dssp --------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE----E-HH
T ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCCC
Confidence 55667777677778888888877765 234 37999999999999999998888765556666666664 6665
Q ss_pred H
Q psy7393 434 T 434 (549)
Q Consensus 434 h 434 (549)
+
T Consensus 414 D 414 (414)
T PF15511_consen 414 D 414 (414)
T ss_dssp H
T ss_pred C
Confidence 3
No 96
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=27.48 E-value=1.2e+02 Score=28.66 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=41.5
Q ss_pred hhhhhhhhcCCcccccCCChhHHHHHHHHHH---HHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 234 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYL---AAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 234 sRI~RlLke~~ya~RIsssApVYLAAVLEYL---taEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
--|+-+|++.. |..+-|-...-.|||. +.+||+-|-..|...+++.|+..++++||..-
T Consensus 16 ~~i~~iL~~~G----v~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 16 RVIHLILKSMG----VTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHTT-------B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHcC----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 34777888854 4455666677777775 57788888888888899999999999999843
No 97
>KOG1658|consensus
Probab=26.38 E-value=61 Score=31.73 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=60.7
Q ss_pred ccccchhhhhhhhcCCcccccCCChh-HHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393 229 LQFPVGRIHRLLRKGNYAERVGAGAP-VYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303 (549)
Q Consensus 229 LqFPVsRI~RlLke~~ya~RIsssAp-VYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf 303 (549)
.++|..||+.+++... -.++..... -.++-.-|-+..++-.-++..+...+++.+.-+++..||..-.|+..+-
T Consensus 58 ~rLpL~rik~vvkl~p-dl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~fle 132 (162)
T KOG1658|consen 58 SRLPLARIKQVVKLDP-DLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFAFLE 132 (162)
T ss_pred hhccHHHHHhhccCCc-chhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHHHHh
Confidence 5789999999999854 445555444 4567788999999999999888888888899999999999998887765
No 98
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=26.17 E-value=75 Score=30.33 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH-HHhhhcCCcccchhhhhhhhcCc
Q psy7393 251 AGAPVYLAAVMEYLAAEVLELAG-NAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 251 ssApVYLAAVLEYLtaEILELAG-n~Ar~~kkkRITPrHI~lAI~ND 296 (549)
..--+|+-+++||+.- |..-. .+|.+..++.|.|+|+-.|+.|=
T Consensus 34 earei~in~cieFi~~--lsseAne~ce~EaKKTIa~EHviKALenL 78 (148)
T COG5150 34 EAREIFINACIEFINM--LSSEANEACEEEAKKTIAYEHVIKALENL 78 (148)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccccHHHHHHHHHhc
Confidence 3446889999998752 32222 33444567889999999998763
No 99
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=25.32 E-value=2.4e+02 Score=26.64 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=38.5
Q ss_pred hhhhHhhhcCCccccccCchhHHHHHHHHHH---HHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 376 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYL---AAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 376 gRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYL---taEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
--|+.+|++... ...-|-...-.|||. +.+||+-|-..|...+++. |+..++++||..
T Consensus 16 ~~i~~iL~~~Gv----~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~----i~~~DVrLAi~~ 76 (129)
T PF02291_consen 16 RVIHLILKSMGV----TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRST----IDADDVRLAIQS 76 (129)
T ss_dssp HHHHHHHHHTT-------B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS----B-HHHHHHHHHH
T ss_pred HHHHHHHHHcCC----cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CChHHHHHHHHH
Confidence 468888888532 222333344455554 5788999999998887776 999999999985
No 100
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=24.48 E-value=1.5e+02 Score=24.68 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.6
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 247 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 247 ~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
..++..|---|+-+++..+.+|...+-..|...++...++.++..|+.
T Consensus 22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 367788888899999888899999998889888999999999998864
No 101
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=24.26 E-value=1.1e+02 Score=29.33 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=39.8
Q ss_pred ccccchhhhhHhhhcCCccc-ccc-CchhHHHHHHHHHHHHHHHHHhHHHHh-hcCCCCcccccChHHHHHHHhCCc
Q psy7393 370 GLQFPVGRIHRLLRKGNYAE-RVG-AGAPVYLAAVMEYLAAEVLELAGNAAR-DNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 370 gLqFPVgRI~R~Lk~g~ya~-RVs-a~ApVYLAAVLEYLtaEILELAGNaAk-d~kkkR~~~~ITPehLqlAI~NDe 443 (549)
.+..|-.-|.++.-+.-... -+. ..--+++-+++||+ .+|-.-.|.+. +.+||. |.|+|+-.|..|.+
T Consensus 9 e~sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi--~~lsseAne~ce~EaKKT----Ia~EHviKALenLe 79 (148)
T COG5150 9 ENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFI--NMLSSEANEACEEEAKKT----IAYEHVIKALENLE 79 (148)
T ss_pred cccCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcc----ccHHHHHHHHHhcc
Confidence 34455555555544321111 111 23467889999998 45555555443 344454 99999999987754
No 102
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=23.30 E-value=1.9e+02 Score=25.64 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhHHHHhhc--CCCCcccccChHHHHHHHhCCcc
Q psy7393 404 EYLAAEVLELAGNAARDN--KKTHSWWCLTAETVQGAALTFER 444 (549)
Q Consensus 404 EYLtaEILELAGNaAkd~--kkkR~~~~ITPehLqlAI~NDeE 444 (549)
|+++..|.++.-+++.-. ++.| |+++++..++++|+.
T Consensus 31 ~iv~~~i~~l~~~a~~~A~~r~~k----~~~eD~~FliR~D~~ 69 (92)
T cd07978 31 DIVVEYIIELCHKAAEVAQRRRGK----VKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHhcCHH
Confidence 344455555554444322 3443 899999999999974
No 103
>COG5251 TAF40 Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=22.07 E-value=69 Score=31.93 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=46.7
Q ss_pred ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhh-cCCcccchhhhhhhhcC
Q psy7393 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD-NKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~-~kkkRITPrHI~lAI~N 295 (549)
||-..|+++.-. ...+-|+..-.||+.++=--++.||+|+|..+-.. .-.....|.|++.|++-
T Consensus 116 lnKt~VKKlast-V~nQtVspNi~I~l~g~~KVfvGEiIElA~~Vq~~w~~sgpl~p~h~reayr~ 180 (199)
T COG5251 116 LNKTQVKKLAST-VANQTVSPNIRIFLQGVGKVFVGEIIELAMIVQNKWLTSGPLIPFHKREAYRY 180 (199)
T ss_pred CCHHHHHHHHHH-HhccccCCCeeeeeechhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Confidence 444455555443 34578888999999999999999999999765322 23446789999988763
No 104
>PHA02669 hypothetical protein; Provisional
Probab=21.00 E-value=1.5e+02 Score=29.56 Aligned_cols=80 Identities=30% Similarity=0.392 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHH-hCCcccccccCCCCcccceeecCCccccccchhh
Q psy7393 395 APVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAA-LTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEH 473 (549)
Q Consensus 395 ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI-~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~ 473 (549)
|.+||++..-|| ++|+-..+-+.|||.| +.-...++|. ..+--|+.-.+-.++|-.| +.-+.--.+|
T Consensus 12 avi~LTgAaiYl---LiEiGLAaERanKrsR----vK~nMRkLatQLGnGt~~S~iGP~~isr~m-----~~g~SRWDSD 79 (210)
T PHA02669 12 AVIYLTGAAIYL---LIEIGLAAERANKRSR----VKANMRKLATQLGNGTLDSTIGPCTISRDM-----GFGCSRWDSD 79 (210)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhhHHH----HHHHHHHHHHHhcCCcccccccceeeeccc-----ccCcccccCc
Q ss_pred hhhcccccccCCCCccccCCCC
Q psy7393 474 LENATGLLVDEPGDTLDSTSTR 495 (549)
Q Consensus 474 l~~~t~l~~d~~~d~l~~~~~~ 495 (549)
.|-+||+.+|++|
T Consensus 80 ---------tEdGdtvSTTSTS 92 (210)
T PHA02669 80 ---------TEDGDTVSTTSTS 92 (210)
T ss_pred ---------ccCCceeeeeecC
No 105
>PLN00160 histone H3; Provisional
Probab=21.00 E-value=1e+02 Score=27.84 Aligned_cols=67 Identities=27% Similarity=0.251 Sum_probs=52.1
Q ss_pred cccccchhhhhhhhcCC--c---ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKGN--Y---AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~~--y---a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
+|-+|-.-|.|+.++-. + ..|..+.|...|--+-|...-.++|-+..-|...|+..|.|++++++.+
T Consensus 19 ~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~r 90 (97)
T PLN00160 19 DLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARR 90 (97)
T ss_pred hhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHH
Confidence 56666666667766621 2 2688888988898899999999999887777777888999999998843
Done!