Query psy7393
Match_columns 549
No_of_seqs 346 out of 956
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:06:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f8n_G Core histone macro-H2A. 100.0 4.2E-41 1.4E-45 301.2 7.1 119 207-327 1-119 (120)
2 2nqb_C Histone H2A; nucleosome 100.0 6.3E-41 2.1E-45 301.2 7.5 121 208-328 1-121 (123)
3 1tzy_A Histone H2A-IV; histone 100.0 7.5E-41 2.6E-45 302.9 7.5 122 207-328 1-123 (129)
4 2f8n_K Histone H2A type 1; nuc 100.0 3.3E-40 1.1E-44 305.0 7.3 124 206-329 19-143 (149)
5 1id3_C Histone H2A.1; nucleoso 100.0 2.9E-39 9.9E-44 293.2 9.9 117 213-329 8-124 (131)
6 1f66_C Histone H2A.Z; nucleoso 100.0 3E-39 1E-43 292.1 7.1 121 207-328 1-125 (128)
7 2nqb_C Histone H2A; nucleosome 100.0 2.4E-38 8.2E-43 284.4 7.5 120 350-479 1-120 (123)
8 2f8n_G Core histone macro-H2A. 100.0 2.2E-38 7.4E-43 283.7 7.2 119 349-479 1-119 (120)
9 1tzy_A Histone H2A-IV; histone 100.0 3.5E-38 1.2E-42 285.4 7.6 121 349-479 1-122 (129)
10 2f8n_K Histone H2A type 1; nuc 100.0 1.8E-37 6.2E-42 286.7 7.1 123 347-479 18-141 (149)
11 1id3_C Histone H2A.1; nucleoso 100.0 8.7E-37 3E-41 276.9 9.8 117 353-479 6-122 (131)
12 1f66_C Histone H2A.Z; nucleoso 100.0 2.4E-36 8.2E-41 273.1 7.0 114 355-479 10-124 (128)
13 2jss_A Chimera of histone H2B. 100.0 2E-34 6.9E-39 275.1 5.9 183 234-469 7-192 (192)
14 2jss_A Chimera of histone H2B. 100.0 7.6E-33 2.6E-37 264.3 2.6 115 193-317 77-192 (192)
15 3ksy_A SOS-1, SON of sevenless 99.8 6.2E-22 2.1E-26 226.8 3.5 100 219-320 93-192 (1049)
16 3ksy_A SOS-1, SON of sevenless 99.8 1.7E-21 5.7E-26 223.2 5.8 86 362-452 94-179 (1049)
17 1jfi_A Transcription regulator 99.8 5.8E-19 2E-23 152.6 6.3 81 223-303 4-84 (98)
18 1jfi_A Transcription regulator 99.7 5.9E-18 2E-22 146.3 6.1 82 365-450 4-85 (98)
19 1f1e_A Histone fold protein; a 99.6 6.4E-15 2.2E-19 137.1 10.4 144 230-442 4-147 (154)
20 1n1j_B NF-YC; histone-like PAI 99.5 5.7E-15 1.9E-19 127.2 6.7 78 226-303 15-92 (97)
21 4g92_C HAPE; transcription fac 99.5 8.4E-15 2.9E-19 130.6 6.4 75 229-303 40-114 (119)
22 1n1j_B NF-YC; histone-like PAI 99.5 6.8E-14 2.3E-18 120.5 8.2 77 369-449 16-92 (97)
23 4g92_C HAPE; transcription fac 99.5 9.5E-14 3.3E-18 123.8 8.0 75 371-449 40-114 (119)
24 2yfw_B Histone H4, H4; cell cy 99.4 1.9E-13 6.7E-18 119.0 7.1 88 349-443 1-95 (103)
25 1tzy_D Histone H4-VI; histone- 99.4 2.2E-13 7.5E-18 118.6 7.3 88 349-443 1-95 (103)
26 2byk_A Chrac-16; nucleosome sl 99.4 1.3E-13 4.4E-18 126.4 4.9 85 219-303 8-93 (140)
27 2yfw_B Histone H4, H4; cell cy 99.4 2.9E-13 9.9E-18 117.9 5.3 88 207-297 1-95 (103)
28 1tzy_D Histone H4-VI; histone- 99.4 4.9E-13 1.7E-17 116.4 5.8 87 207-296 1-94 (103)
29 2byk_A Chrac-16; nucleosome sl 99.2 4.9E-12 1.7E-16 116.0 5.9 85 361-449 8-93 (140)
30 1f1e_A Histone fold protein; a 98.8 4E-09 1.4E-13 98.2 4.6 71 225-296 77-147 (154)
31 1b67_A Protein (histone HMFA); 98.3 4.5E-07 1.5E-11 72.7 5.0 65 230-295 2-66 (68)
32 1ku5_A HPHA, archaeal histon; 98.1 2E-06 6.9E-11 69.5 5.0 65 230-295 6-70 (70)
33 1b67_A Protein (histone HMFA); 98.1 3.5E-06 1.2E-10 67.5 6.4 65 372-441 2-66 (68)
34 1ku5_A HPHA, archaeal histon; 98.1 6.7E-06 2.3E-10 66.5 6.5 65 372-441 6-70 (70)
35 1id3_B Histone H4; nucleosome 97.8 3.4E-05 1.2E-09 67.2 7.5 82 354-442 12-93 (102)
36 1id3_B Histone H4; nucleosome 97.8 3.1E-05 1E-09 67.5 6.1 75 219-296 19-93 (102)
37 1n1j_A NF-YB; histone-like PAI 97.7 3E-05 1E-09 65.8 5.0 67 228-294 6-73 (93)
38 3b0c_W CENP-W, centromere prot 97.7 4.2E-05 1.4E-09 62.9 5.2 65 230-294 4-68 (76)
39 2byk_B Chrac-14; nucleosome sl 97.5 4.9E-05 1.7E-09 68.6 3.8 70 228-297 7-77 (128)
40 1n1j_A NF-YB; histone-like PAI 97.4 0.0003 1E-08 59.6 7.0 68 369-440 5-73 (93)
41 3b0c_W CENP-W, centromere prot 97.3 0.00048 1.6E-08 56.6 6.9 65 372-440 4-68 (76)
42 2hue_C Histone H4; mini beta s 97.1 0.00064 2.2E-08 57.0 6.1 71 223-296 5-75 (84)
43 2byk_B Chrac-14; nucleosome sl 97.1 0.00075 2.6E-08 60.9 6.2 70 370-443 7-77 (128)
44 2hue_C Histone H4; mini beta s 96.8 0.0028 9.4E-08 53.1 6.9 72 365-443 5-76 (84)
45 1taf_B TFIID TBP associated fa 96.6 0.0026 9E-08 52.2 5.4 65 229-294 5-69 (70)
46 1taf_B TFIID TBP associated fa 96.3 0.0092 3.2E-07 49.0 7.0 65 371-440 5-69 (70)
47 1jfi_B DR1 protein, transcript 96.3 0.0032 1.1E-07 60.0 4.8 77 226-303 11-87 (179)
48 2l5a_A Histone H3-like centrom 96.3 0.011 3.9E-07 58.4 8.7 169 247-441 35-225 (235)
49 1tzy_B Histone H2B; histone-fo 95.5 0.011 3.8E-07 53.6 4.2 65 229-294 36-100 (126)
50 3b0c_T CENP-T, centromere prot 95.4 0.017 5.8E-07 50.9 5.3 70 229-299 6-75 (111)
51 1tzy_B Histone H2B; histone-fo 95.4 0.022 7.5E-07 51.7 6.0 66 371-441 36-101 (126)
52 3b0c_T CENP-T, centromere prot 95.3 0.018 6.2E-07 50.7 5.2 74 370-448 5-78 (111)
53 2nqb_D Histone H2B; nucleosome 95.3 0.027 9.1E-07 50.9 6.2 64 373-441 35-98 (123)
54 2nqb_D Histone H2B; nucleosome 95.3 0.013 4.4E-07 53.0 4.1 64 230-294 34-97 (123)
55 1jfi_B DR1 protein, transcript 95.1 0.036 1.2E-06 52.8 6.6 68 369-440 12-79 (179)
56 3v9r_A MHF1, uncharacterized p 95.0 0.029 9.9E-07 48.1 5.2 78 226-305 11-89 (90)
57 1taf_A TFIID TBP associated fa 94.7 0.048 1.6E-06 44.5 5.5 60 235-295 6-65 (68)
58 1taf_A TFIID TBP associated fa 94.6 0.098 3.3E-06 42.7 7.2 60 377-441 6-65 (68)
59 3b0b_B CENP-S, centromere prot 93.2 0.054 1.9E-06 47.8 3.4 78 226-304 18-95 (107)
60 4dra_A Centromere protein S; D 93.2 0.054 1.9E-06 48.3 3.5 80 225-305 25-104 (113)
61 1bh9_B TAFII28; histone fold, 91.6 0.16 5.5E-06 43.3 4.2 64 230-294 16-80 (89)
62 3vh5_A CENP-S; histone fold, c 91.1 0.13 4.5E-06 47.4 3.4 80 225-305 17-96 (140)
63 3v9r_A MHF1, uncharacterized p 90.5 0.33 1.1E-05 41.5 5.1 77 368-450 11-88 (90)
64 3nqj_A Histone H3-like centrom 90.0 0.26 9E-06 41.6 4.0 64 231-294 4-73 (82)
65 2hue_B Histone H3; mini beta s 89.9 0.31 1E-05 40.7 4.3 65 230-294 3-71 (77)
66 3nqj_A Histone H3-like centrom 89.7 0.58 2E-05 39.5 5.8 64 373-440 4-73 (82)
67 3b0b_C CENP-X, centromere prot 89.4 0.47 1.6E-05 39.9 5.1 65 228-292 6-72 (81)
68 4dra_E Centromere protein X; D 89.2 0.57 1.9E-05 39.8 5.5 66 227-292 9-76 (84)
69 2hue_B Histone H3; mini beta s 89.0 0.72 2.5E-05 38.5 5.9 65 372-440 3-71 (77)
70 3b0b_B CENP-S, centromere prot 88.8 0.3 1E-05 43.1 3.6 77 368-449 18-94 (107)
71 3nqu_A Histone H3-like centrom 88.0 0.41 1.4E-05 44.1 4.1 68 227-294 58-131 (140)
72 3r45_A Histone H3-like centrom 87.9 0.32 1.1E-05 45.5 3.4 69 227-295 74-148 (156)
73 2ly8_A Budding yeast chaperone 87.6 0.77 2.6E-05 41.3 5.5 49 246-294 62-110 (121)
74 2l5a_A Histone H3-like centrom 87.4 0.56 1.9E-05 46.4 5.0 59 236-295 167-225 (235)
75 4dra_A Centromere protein S; D 87.1 0.46 1.6E-05 42.4 3.8 78 368-450 26-103 (113)
76 3r45_A Histone H3-like centrom 86.8 0.7 2.4E-05 43.3 5.0 68 369-440 74-147 (156)
77 3nqu_A Histone H3-like centrom 86.4 0.86 2.9E-05 42.0 5.3 68 369-440 58-131 (140)
78 1bh9_B TAFII28; histone fold, 86.2 1.4 4.8E-05 37.5 6.1 66 372-441 16-81 (89)
79 2yfv_A Histone H3-like centrom 85.8 0.57 1.9E-05 40.8 3.6 68 227-294 24-98 (100)
80 1tzy_C Histone H3; histone-fol 84.9 0.81 2.8E-05 41.9 4.3 68 227-294 59-130 (136)
81 2yfv_A Histone H3-like centrom 84.6 1.2 4.1E-05 38.8 5.1 68 369-440 24-98 (100)
82 2ly8_A Budding yeast chaperone 83.9 2.2 7.4E-05 38.4 6.6 50 388-441 62-111 (121)
83 1tzy_C Histone H3; histone-fol 83.7 1.7 5.8E-05 39.8 5.9 68 369-440 59-130 (136)
84 3vh5_A CENP-S; histone fold, c 82.6 0.95 3.2E-05 41.7 3.8 78 368-450 18-95 (140)
85 4dra_E Centromere protein X; D 81.6 4.2 0.00014 34.4 7.1 66 369-438 9-76 (84)
86 3b0b_C CENP-X, centromere prot 80.8 3.7 0.00013 34.5 6.4 65 370-438 6-72 (81)
87 1k6k_A ATP-dependent CLP prote 64.3 4.7 0.00016 34.7 3.4 41 265-305 6-46 (143)
88 1khy_A CLPB protein; alpha hel 51.0 8.7 0.0003 33.1 2.8 33 265-297 10-42 (148)
89 3fes_A ATP-dependent CLP endop 48.4 6.5 0.00022 34.5 1.6 40 265-304 12-53 (145)
90 2y1q_A CLPC N-domain, negative 47.3 7.8 0.00027 33.6 1.9 40 265-304 10-51 (150)
91 3fh2_A Probable ATP-dependent 45.5 7.8 0.00027 33.9 1.6 40 265-304 11-52 (146)
92 1khy_A CLPB protein; alpha hel 44.9 23 0.00078 30.4 4.5 33 408-444 11-43 (148)
93 1h3o_B Transcription initiatio 42.3 53 0.0018 27.2 6.0 66 372-441 5-70 (76)
94 1h3o_B Transcription initiatio 40.4 33 0.0011 28.4 4.5 66 230-295 5-70 (76)
95 3zri_A CLPB protein, CLPV; cha 40.3 15 0.00051 33.9 2.7 48 257-304 18-70 (171)
96 3fes_A ATP-dependent CLP endop 38.5 16 0.00056 31.9 2.6 33 407-443 12-44 (145)
97 3fh2_A Probable ATP-dependent 38.4 20 0.00068 31.3 3.1 32 408-443 12-43 (146)
98 1k6k_A ATP-dependent CLP prote 37.2 19 0.00066 30.8 2.8 40 407-450 6-45 (143)
99 2y1q_A CLPC N-domain, negative 32.3 24 0.00082 30.5 2.6 33 408-444 11-43 (150)
100 3zri_A CLPB protein, CLPV; cha 31.7 36 0.0012 31.3 3.8 43 398-444 17-62 (171)
101 1wwi_A Hypothetical protein TT 28.0 77 0.0026 29.4 5.2 61 230-291 2-62 (148)
102 1r6b_X CLPA protein; AAA+, N-t 21.5 56 0.0019 35.7 3.6 40 265-304 6-45 (758)
No 1
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=4.2e-41 Score=301.21 Aligned_cols=119 Identities=62% Similarity=0.949 Sum_probs=106.6
Q ss_pred ccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccch
Q psy7393 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 286 (549)
Q Consensus 207 MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITP 286 (549)
|||+| +|++++++|||+||||||||+||+||||+++|+.||+++|||||+||||||++||+|+|+|+|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 88876 5666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393 287 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI 327 (549)
Q Consensus 287 rHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~ 327 (549)
+||++||+||+|||+||+++||++|||+|+||++|++||+.
T Consensus 79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 99999999999999999999999999999999999999864
No 2
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=6.3e-41 Score=301.19 Aligned_cols=121 Identities=89% Similarity=1.246 Sum_probs=105.2
Q ss_pred cCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchh
Q psy7393 208 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 287 (549)
Q Consensus 208 Sgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPr 287 (549)
||+||++|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||+|+|+|+|+++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 56777788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 288 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 288 HI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
||++||+||+|||+||+++||++|||+|+||++|++||+..
T Consensus 81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~ 121 (123)
T 2nqb_C 81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 121 (123)
T ss_dssp HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC---
T ss_pred HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCccccc
Confidence 99999999999999999999999999999999999998753
No 3
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=7.5e-41 Score=302.88 Aligned_cols=122 Identities=86% Similarity=1.224 Sum_probs=105.2
Q ss_pred ccCCCC-CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q psy7393 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 285 (549)
Q Consensus 207 MSgrgk-~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRIT 285 (549)
|||+|+ ++|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||||+|+|+|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 888887 6777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 286 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 286 PrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
|+||++||+||+|||+||+++||++|||+|+||+++++||+..
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~ 123 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDS 123 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC----
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCccccc
Confidence 9999999999999999999999999999999999999998653
No 4
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=3.3e-40 Score=304.97 Aligned_cols=124 Identities=84% Similarity=1.184 Sum_probs=104.4
Q ss_pred cccCCCCC-CCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q psy7393 206 TMSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 284 (549)
Q Consensus 206 ~MSgrgk~-gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRI 284 (549)
+|||+|++ +|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||||+|+|+|+++++++|
T Consensus 19 ~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrI 98 (149)
T 2f8n_K 19 SMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 98 (149)
T ss_dssp ---------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 69998874 77778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccce
Q psy7393 285 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITI 329 (549)
Q Consensus 285 TPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~~ 329 (549)
+|+||++||+||+|||+||+++||++|||+|+||++|++||+...
T Consensus 99 tprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 99 IPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp CHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred cHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence 999999999999999999999999999999999999999987543
No 5
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.9e-39 Score=293.18 Aligned_cols=117 Identities=74% Similarity=1.120 Sum_probs=106.4
Q ss_pred CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393 213 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 292 (549)
Q Consensus 213 ~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA 292 (549)
++|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus 8 ~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lA 87 (131)
T 1id3_C 8 AGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLA 87 (131)
T ss_dssp --------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHH
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHhhhcCceeccccccCCcccccccccccce
Q psy7393 293 IRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITI 329 (549)
Q Consensus 293 I~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~~ 329 (549)
|+||+|||+||+++||++|||+|+||++|++||+...
T Consensus 88 I~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (131)
T 1id3_C 88 IRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKA 124 (131)
T ss_dssp HHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSC
T ss_pred HhccHHHHHHhcCceecCCccCCCccHHHcCcccccc
Confidence 9999999999999999999999999999999987643
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=3e-39 Score=292.09 Aligned_cols=121 Identities=60% Similarity=0.871 Sum_probs=99.7
Q ss_pred ccCCCC---CCCCCCccCCccccccccccchhhhhhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy7393 207 MSGRGK---GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 282 (549)
Q Consensus 207 MSgrgk---~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya-~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkk 282 (549)
|||+.. +++.+++.+|||+||||||||+||+||||+++|+ .||+++|||||+||||||++||||+|+|+|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 665433 3455667899999999999999999999999987 599999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393 283 RIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT 328 (549)
Q Consensus 283 RITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~ 328 (549)
+|+|+||++||+||+||++||+. ||++|||+|+||++|++||+..
T Consensus 81 rItprhi~lAI~nDeEL~~Ll~~-tia~ggv~P~i~~~l~~k~~~~ 125 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGQQ 125 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHHCCS-EETTCCCCCCCCGGGC------
T ss_pred eEcHHHHHHHHhccHHHhhhhcc-eecCCccCCCCCHHhcCccccc
Confidence 99999999999999999999964 9999999999999999998653
No 7
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=2.4e-38 Score=284.43 Aligned_cols=120 Identities=66% Similarity=0.906 Sum_probs=103.6
Q ss_pred ccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccc
Q psy7393 350 SGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWC 429 (549)
Q Consensus 350 sg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ 429 (549)
||+||+||.+++++|+|+|+||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|++++++|
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr---- 76 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR---- 76 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----
Confidence 4778889988899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 430 LTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 430 ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+||++||+||+|||.+++ +++|++|||+||||+++++|++.
T Consensus 77 Itp~hi~lAI~nDeEL~~Ll~------~vtia~ggvlp~i~~~l~~k~~~ 120 (123)
T 2nqb_C 77 IIPRHLQLAIRNDEELNKLLS------GVTIAQGGVLPNIQAVLLPKKTE 120 (123)
T ss_dssp ECHHHHHHHHHTSHHHHHHTT------TEEETTCCCCCCCCGGGSSCC--
T ss_pred ccHHHHHHHHhccHHHHHHhc------CceeCCCCcCCCccHHHcCcccc
Confidence 999999999999999999998 58889999999999999999864
No 8
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.2e-38 Score=283.68 Aligned_cols=119 Identities=47% Similarity=0.708 Sum_probs=105.3
Q ss_pred cccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCccc
Q psy7393 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWW 428 (549)
Q Consensus 349 msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~ 428 (549)
|||+| ||++++++|+|+|+||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|++++++|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~r--- 75 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGR--- 75 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE---
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCce---
Confidence 78765 7778889999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 429 CLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 429 ~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+||++||+||+|||.+++ +++|++|||+||||+++++|+++
T Consensus 76 -Itp~hi~lAI~nDeEL~~Ll~------~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 76 -VTPRHILLAVANDEELNQLLK------GVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp -ECHHHHHHHHHTSHHHHHHTT------TEEETTCCCCCCCCGGGSCCC--
T ss_pred -EcHHHHHHHHhcCHHHHHHhC------CceECCCCcCCCcCHHHcCCccC
Confidence 999999999999999999998 58899999999999999999864
No 9
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=3.5e-38 Score=285.43 Aligned_cols=121 Identities=63% Similarity=0.905 Sum_probs=103.6
Q ss_pred cccCCC-CCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcc
Q psy7393 349 MSGRGK-GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSW 427 (549)
Q Consensus 349 msg~gK-~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~ 427 (549)
|||+|| +||.+++++|+|+|+||||||+||+|+||+++|+.||+++|||||+||||||++||||+|+|+|++++++|
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr-- 78 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR-- 78 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE--
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--
Confidence 788887 77888899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 428 WCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 428 ~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+||++||+||+|||.+|+ +++|++|||+||||+++++|++.
T Consensus 79 --Itp~hi~lAI~nDeEL~~L~~------~vtIa~ggvlP~i~~~l~~k~~~ 122 (129)
T 1tzy_A 79 --IIPRHLQLAIRNDEELNKLLG------KVTIAQGGVLPNIQAVLLPKKTD 122 (129)
T ss_dssp --ECHHHHHHHHHTSHHHHHHTT------TEEETTCCCCCCCCGGGSCC---
T ss_pred --EcHHHHHHHHhccHHHHHHhC------CCeecCCCcCCCCCHHHcCcccc
Confidence 999999999999999999998 68888999999999999999875
No 10
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=1.8e-37 Score=286.68 Aligned_cols=123 Identities=61% Similarity=0.860 Sum_probs=102.8
Q ss_pred cccccCCCC-CCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy7393 347 YTMSGRGKG-GKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425 (549)
Q Consensus 347 ~~msg~gK~-gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR 425 (549)
..|||+||+ ||.+++++|+|+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|++++++|
T Consensus 18 ~~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkr 97 (149)
T 2f8n_K 18 GSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 97 (149)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred cccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 468998876 7778889999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 426 SWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 426 ~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
|+|+||++||+||+|||.+|+ +++|++|||+|||++++++|++.
T Consensus 98 ----ItprhI~lAI~nDeEL~~Ll~------~vtIa~gGVlP~i~~~l~~k~~~ 141 (149)
T 2f8n_K 98 ----IIPRHLQLAIRNDEELNKLLG------RVTIAQGGVLPNIQAVLLPKKTE 141 (149)
T ss_dssp ----ECHHHHHHHHHHSHHHHHHTT------TEEETTCCCCCCCCGGGSCC---
T ss_pred ----CcHHHHHHHHhccHHHHHHhc------CceEcCCCCCCCccHHHcCcccc
Confidence 999999999999999999998 68899999999999999999875
No 11
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=8.7e-37 Score=276.95 Aligned_cols=117 Identities=51% Similarity=0.821 Sum_probs=104.1
Q ss_pred CCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccCh
Q psy7393 353 GKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTA 432 (549)
Q Consensus 353 gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITP 432 (549)
||++|.+++++|+|+|+||||||+||+|+||+++|+.||+++|||||+||||||++||||+|+|+|++++++| |+|
T Consensus 6 ~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr----Itp 81 (131)
T 1id3_C 6 GKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTR----IIP 81 (131)
T ss_dssp ----------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECH
T ss_pred CCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCce----EcH
Confidence 4566777789999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred HHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 433 ETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 433 ehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
+||++||+||+|||.+++ +++|++|||+||||+.+|+|++.
T Consensus 82 ~hI~lAI~nDeEL~~Ll~------~vtIa~ggvlP~i~~~l~~k~~~ 122 (131)
T 1id3_C 82 RHLQLAIRNDDELNKLLG------NVTIAQGGVLPNIHQNLLPKKSA 122 (131)
T ss_dssp HHHHHHHHTCHHHHHHTT------TEEETTCCCCCCCCGGGSCCSCC
T ss_pred HHHHHHHhccHHHHHHhc------CceecCCccCCCccHHHcCcccc
Confidence 999999999999999998 68889999999999999999875
No 12
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=2.4e-36 Score=273.13 Aligned_cols=114 Identities=47% Similarity=0.641 Sum_probs=98.4
Q ss_pred CCCCCCcCCCcCcccccccchhhhhHhhhcCCcc-ccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChH
Q psy7393 355 GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE 433 (549)
Q Consensus 355 ~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya-~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPe 433 (549)
+++.+++++|+|+||||||||+||+|+||+++|+ .||+++|||||+||||||++||||+|+|+|++++++| |+|+
T Consensus 10 ~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr----Itpr 85 (128)
T 1f66_C 10 SGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKR----ITPR 85 (128)
T ss_dssp -------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE----ECHH
T ss_pred CCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe----EcHH
Confidence 3456678899999999999999999999999987 5999999999999999999999999999999999997 9999
Q ss_pred HHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393 434 TVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG 479 (549)
Q Consensus 434 hLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~ 479 (549)
||++||+||+|||.+++ .+|++|||+||||+++|+|++.
T Consensus 86 hi~lAI~nDeEL~~Ll~-------~tia~ggv~P~i~~~l~~k~~~ 124 (128)
T 1f66_C 86 HLQLAIRGDEELDSLIK-------ATIAGGGVIPHIHKSLIGKKGQ 124 (128)
T ss_dssp HHHHHHHHSHHHHHHCC-------SEETTCCCCCCCCGGGC-----
T ss_pred HHHHHHhccHHHhhhhc-------ceecCCccCCCCCHHhcCcccc
Confidence 99999999999999995 3788999999999999999875
No 13
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2e-34 Score=275.15 Aligned_cols=183 Identities=36% Similarity=0.494 Sum_probs=153.0
Q ss_pred hhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC--cHHHHhhhcCceeccc
Q psy7393 234 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN--DEELNKLLSGVTIAQG 311 (549)
Q Consensus 234 sRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N--DeEL~~Lfk~vtIs~G 311 (549)
..|+|.|++..-...|+..|..+|...+..++..|..-|...++.++++.||+++|+.|++- ..|| ..+.++.|
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeL----ak~Av~eG 82 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGEL----AKHAVSEG 82 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHH----HHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHH
Confidence 36899999976667899999999999999999999999999999999999999999999972 1222 12233333
Q ss_pred cccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCcc-cc
Q psy7393 312 GVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ER 390 (549)
Q Consensus 312 GVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya-~R 390 (549)
+ | ++.. ..|+ ++++|+|+|+||||||+||+|+||+++|+ .|
T Consensus 83 ~------------k--------------Av~k---~~~s---------k~~~s~s~ragl~fPv~ri~R~lk~~~~a~~R 124 (192)
T 2jss_A 83 T------------R--------------AVTK---YSSS---------TQAQSSSARAGLQFPVGRIKRYLKRHATGRTR 124 (192)
T ss_dssp H------------H--------------HHHH---HHHH---------CSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCC
T ss_pred H------------H--------------HHHh---hccc---------cccccccccCCCcCCHHHHHHHHHhcCccccc
Confidence 1 0 0100 1111 14569999999999999999999999886 69
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccCCCCcccceeecCCcccccc
Q psy7393 391 VGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHV 469 (549)
Q Consensus 391 Vsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I 469 (549)
|+++|||||+||||||++||||+|+|+|+++++++ |+|+|+++||+||+|||++++ .+|++|||+|||
T Consensus 125 v~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~----I~p~~i~lAi~nD~eL~~L~~-------~ti~~ggv~p~i 192 (192)
T 2jss_A 125 VGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKR----ITPRHLQLAIRGDDELDSLIR-------ATIASGGVLPHI 192 (192)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS----CCHHHHHHHHHTSHHHHHHHC-------SCCTTTCCSSCC
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCHHHHHHHHhccHHHHHHHh-------hhhcCCCcCCCC
Confidence 99999999999999999999999999999999998 999999999999999999995 367889999997
No 14
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.97 E-value=7.6e-33 Score=264.32 Aligned_cols=115 Identities=56% Similarity=0.865 Sum_probs=107.3
Q ss_pred cCcCCCCCCcccccccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHH
Q psy7393 193 FSIPGAVPIPQIYTMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLEL 271 (549)
Q Consensus 193 ~~~~a~~~a~s~~~MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya-~RIsssApVYLAAVLEYLtaEILEL 271 (549)
+|+..+.+|.+.|+|++ +.+|+|+||||||||+||+||||+++++ .||+++|||||+||||||++||+|+
T Consensus 77 ~Av~eG~kAv~k~~~sk---------~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlel 147 (192)
T 2jss_A 77 HAVSEGTRAVTKYSSST---------QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLEL 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHC---------SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccc---------ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHH
Confidence 56777788888888875 3469999999999999999999999887 6999999999999999999999999
Q ss_pred HHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCceeccccccCCc
Q psy7393 272 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI 317 (549)
Q Consensus 272 AGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I 317 (549)
|+|+|+++++++|+|+||++||+||+||++||+ +||++|||+|||
T Consensus 148 A~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 148 AGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence 999999999999999999999999999999996 699999999997
No 15
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.83 E-value=6.2e-22 Score=226.77 Aligned_cols=100 Identities=27% Similarity=0.465 Sum_probs=82.7
Q ss_pred ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHH
Q psy7393 219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 298 (549)
Q Consensus 219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeE 298 (549)
+..+||+|||||||||||||+| +++|++||+++||||||||||||++||||||||+|+++++++|+|+||++||+||+|
T Consensus 93 ~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 93 AIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred hhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 4579999999999999999999 989999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeccccccCCcccc
Q psy7393 299 LNKLLSGVTIAQGGVLPNIQAG 320 (549)
Q Consensus 299 L~~Lfk~vtIs~GGVlP~I~~~ 320 (549)
|..+|.+. ...+|++|.....
T Consensus 172 L~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 172 LMDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHHHCC----------------
T ss_pred HHHHHhhc-cccccCCCCcccc
Confidence 99999765 3566788876654
No 16
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.83 E-value=1.7e-21 Score=223.21 Aligned_cols=86 Identities=30% Similarity=0.490 Sum_probs=81.4
Q ss_pred CCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 362 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 362 ~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
..++|+|||||||||||||+| +|+|+.|||++||||||||||||++||||||||+|++++++| |+|+|+++|++|
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~----i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYE----ITKQDIKVAMCA 168 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCB----CCHHHHHHHHHH
T ss_pred hhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCce----ecCccccccccC
Confidence 468889999999999999999 889999999999999999999999999999999999999997 999999999999
Q ss_pred CcccccccCCC
Q psy7393 442 FERVDDVHGGD 452 (549)
Q Consensus 442 DeEL~~L~gg~ 452 (549)
|+||+++++++
T Consensus 169 d~eL~~l~~~d 179 (1049)
T 3ksy_A 169 DKVLMDMFHQD 179 (1049)
T ss_dssp CSSHHHHCC--
T ss_pred CHHHHHHHhhc
Confidence 99999999864
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.75 E-value=5.8e-19 Score=152.57 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=62.5
Q ss_pred ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhh
Q psy7393 223 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 302 (549)
Q Consensus 223 rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~L 302 (549)
++.+++++|||+||+|+||.+.+..||++.|+||+++++|||+.||+++|++.|+++++++|+|+||..||++|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q psy7393 303 L 303 (549)
Q Consensus 303 f 303 (549)
+
T Consensus 84 ~ 84 (98)
T 1jfi_A 84 K 84 (98)
T ss_dssp -
T ss_pred H
Confidence 8
No 18
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.71 E-value=5.9e-18 Score=146.31 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=62.1
Q ss_pred cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcc
Q psy7393 365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFER 444 (549)
Q Consensus 365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeE 444 (549)
++.+++++|||+||+|+||.+.+..|||++|+||+++++||++.||+++|+|.|+++++++ |+|+||+.||.+|++
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krkt----I~~~di~~av~~~e~ 79 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT----MTTSHLKQCIELEGD 79 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C----BCHHHHHTTCC----
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----ecHHHHHHHHhcCch
Confidence 4567899999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred cccccC
Q psy7393 445 VDDVHG 450 (549)
Q Consensus 445 L~~L~g 450 (549)
++.+..
T Consensus 80 l~FL~d 85 (98)
T 1jfi_A 80 PAANKA 85 (98)
T ss_dssp ------
T ss_pred hhHHHh
Confidence 999883
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.57 E-value=6.4e-15 Score=137.06 Aligned_cols=144 Identities=21% Similarity=0.240 Sum_probs=127.3
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCceec
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIA 309 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~vtIs 309 (549)
-+|..-|.|+||+.--..|||..|...|+.++|.+..+|...|.+.|+..|+|.|+++||..|+. .|
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~------~l------- 70 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD------VL------- 70 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH------HH-------
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH------hc-------
Confidence 47889999999998445999999999999999999999999999999999999999999999881 11
Q ss_pred cccccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccc
Q psy7393 310 QGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE 389 (549)
Q Consensus 310 ~GGVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~ 389 (549)
+-+.|. .+.++.||++.|.|++|++ +..
T Consensus 71 ---------------------------g~~~v~------------------------d~~~l~lP~a~V~Ri~k~~-g~~ 98 (154)
T 1f1e_A 71 ---------------------------MVEGVE------------------------DYDGELFGRATVRRILKRA-GIE 98 (154)
T ss_dssp ---------------------------TCTTST------------------------TCCSCCCCHHHHHHHHHHT-TCC
T ss_pred ---------------------------ccccCC------------------------ccccccCCccHHHHHHHHc-CCc
Confidence 001111 2467889999999999998 789
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393 390 RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF 442 (549)
Q Consensus 390 RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND 442 (549)
|||++|.++++.+|||++.+|.+.|.+.|++.++|+ |+|+||+.|+.++
T Consensus 99 RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKT----It~eDV~~Al~~~ 147 (154)
T 1f1e_A 99 RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKT----VQGEDVEKAITYS 147 (154)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHhc
Confidence 999999999999999999999999999999999887 9999999999773
No 20
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.54 E-value=5.7e-15 Score=127.23 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=71.8
Q ss_pred cccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393 226 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303 (549)
Q Consensus 226 RAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf 303 (549)
-.+++||++||+|+||.+.+..||++.|++|+++++|||+.++.+.|++.|+.+++++|+|+||..||++|++|++|.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999999987
No 21
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.52 E-value=8.4e-15 Score=130.64 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=72.3
Q ss_pred ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303 (549)
Q Consensus 229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf 303 (549)
.+||++||+|+||.+.+..+|++.|++|+++++|||+.+|++.|++.|+.+++++|+|+||..||++|++|++|.
T Consensus 40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 40 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999999999998765
No 22
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.48 E-value=6.8e-14 Score=120.53 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=70.7
Q ss_pred cccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccc
Q psy7393 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDV 448 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L 448 (549)
.+++||++||+|+||.+.+..||++.|++|+++++||++.++.+.|++.|+++|+++ |+|+||..||.+|++++.+
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krkt----I~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRT----LQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTCGGGGGG
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CCHHHHHHHHhcCcHHHHH
Confidence 468999999999999998889999999999999999999999999999999998887 9999999999999999988
Q ss_pred c
Q psy7393 449 H 449 (549)
Q Consensus 449 ~ 449 (549)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 7
No 23
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.46 E-value=9.5e-14 Score=123.85 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=71.5
Q ss_pred cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccccc
Q psy7393 371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVH 449 (549)
Q Consensus 371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~ 449 (549)
-+|||+||+|+||.+.+..+|++.|++|+++++||++.+|++.|++.|+++|+++ |+|+||..||.++++++.+.
T Consensus 40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krkt----I~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 40 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRT----LQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTCGGGGGGT
T ss_pred CCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----cCHHHHHHHHhcCchhhHHH
Confidence 4699999999999998999999999999999999999999999999999999997 99999999999999998765
No 24
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.42 E-value=1.9e-13 Score=119.01 Aligned_cols=88 Identities=27% Similarity=0.322 Sum_probs=62.5
Q ss_pred cccCCCCCCC-------CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393 349 MSGRGKGGKT-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 421 (549)
Q Consensus 349 msg~gK~gK~-------k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~ 421 (549)
|||+||+||. +.+++++++.++ ||+..|+|+++++.+ .||+.+|..+|+.+|||++.||++.|.+.|++.
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777776663 445667999999 999999999999877 799999999999999999999999999999999
Q ss_pred CCCCcccccChHHHHHHHhCCc
Q psy7393 422 KKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 422 kkkR~~~~ITPehLqlAI~NDe 443 (549)
++++ |+|+||++|+.+.-
T Consensus 78 kRkt----vt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKT----VTSLDVVYALKRQG 95 (103)
T ss_dssp TCSE----ECHHHHHHHHHHHC
T ss_pred CCCc----CcHHHHHHHHHHcC
Confidence 9987 99999999998653
No 25
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.42 E-value=2.2e-13 Score=118.59 Aligned_cols=88 Identities=28% Similarity=0.333 Sum_probs=70.6
Q ss_pred cccCCCCCC-------CCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393 349 MSGRGKGGK-------TKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 421 (549)
Q Consensus 349 msg~gK~gK-------~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~ 421 (549)
|||+||+|| ++.++.++++.++ ||+..|+|+++++.+ .||+.+|..+|+.+|||++.||++.|.+.|++.
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 677666554 3445679999999 999999999999877 799999999999999999999999999999999
Q ss_pred CCCCcccccChHHHHHHHhCCc
Q psy7393 422 KKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 422 kkkR~~~~ITPehLqlAI~NDe 443 (549)
++++ |+|+||++|+.+.-
T Consensus 78 kRkt----It~~DV~~Alr~~g 95 (103)
T 1tzy_D 78 KRKT----VTAMDVVYALKRQG 95 (103)
T ss_dssp TCSE----ECHHHHHHHHHHTT
T ss_pred CCCc----CCHHHHHHHHHHcC
Confidence 9987 99999999998764
No 26
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.40 E-value=1.3e-13 Score=126.45 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=62.6
Q ss_pred ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHh-hhcCCcccchhhhhhhhcCcH
Q psy7393 219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE 297 (549)
Q Consensus 219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~A-r~~kkkRITPrHI~lAI~NDe 297 (549)
+..+++.+.+++||++||+|+||...+..+|++.|++|++.++|||+.++.+.|.+.| ...++++|+++||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4578888999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q psy7393 298 ELNKLL 303 (549)
Q Consensus 298 EL~~Lf 303 (549)
+|.+|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999988
No 27
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.37 E-value=2.9e-13 Score=117.92 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=63.2
Q ss_pred ccCCCCCCCC-------CCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393 207 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 279 (549)
Q Consensus 207 MSgrgk~gk~-------~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~ 279 (549)
|||+||++|. +.++++|+++++ ||+..|+|+++.+.+ .||+..|..+|+.+|||++.+|++.|.+.|+..
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7887765442 334566899999 999999999999887 799999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhcCcH
Q psy7393 280 KKTRIIPRHLQLAIRNDE 297 (549)
Q Consensus 280 kkkRITPrHI~lAI~NDe 297 (549)
++++|+|+||.+|+++..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999999654
No 28
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.36 E-value=4.9e-13 Score=116.37 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=70.3
Q ss_pred ccCCCCCCC-------CCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393 207 MSGRGKGGK-------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 279 (549)
Q Consensus 207 MSgrgk~gk-------~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~ 279 (549)
|||+||++| ++.++++|++.++ ||+..|+|+++.+.+ .||+..+..+|+.+|||++.+|++.|.+.|+..
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788766443 2334568999999 999999999999887 799999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhcCc
Q psy7393 280 KKTRIIPRHLQLAIRND 296 (549)
Q Consensus 280 kkkRITPrHI~lAI~ND 296 (549)
++++|+|+||.+|+++.
T Consensus 78 kRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp TCSEECHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHc
Confidence 99999999999999865
No 29
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.25 E-value=4.9e-12 Score=116.02 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=61.0
Q ss_pred cCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHH-hhcCCCCcccccChHHHHHHH
Q psy7393 361 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTHSWWCLTAETVQGAA 439 (549)
Q Consensus 361 k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaA-kd~kkkR~~~~ITPehLqlAI 439 (549)
|+.+++.+..++||++||+|+||......+|++.|++|++.++||++.++.+.|.+.| +.+|+++ |++.||..||
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKt----I~~~Dl~~AV 83 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEA----LKYEHLSQVV 83 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCE----ECHHHHHHHH
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cCHHHHHHHH
Confidence 4578888999999999999999999888999999999999999999999999999999 8888776 9999999999
Q ss_pred hCCccccccc
Q psy7393 440 LTFERVDDVH 449 (549)
Q Consensus 440 ~NDeEL~~L~ 449 (549)
.+++.++.+.
T Consensus 84 ~~~e~~dFL~ 93 (140)
T 2byk_A 84 NKNKNLEFLL 93 (140)
T ss_dssp HTCSTTGGGT
T ss_pred hcCchhhhHh
Confidence 9999999888
No 30
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.76 E-value=4e-09 Score=98.22 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred ccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 225 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 225 sRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
.+.++.||++.|.|+||++ ...|||+.|.++|..||||++.+|.+.|.+.|+..++++|+|+||.+|+.++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999998 7899999999999999999999999999999999999999999999999876
No 31
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.33 E-value=4.5e-07 Score=72.69 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=61.4
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
.||.++|.|+||+. ...||++.|...|.-++|+++.+|.+-|...|...+++.|+|+||+.|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999998 678999999999999999999999999999999999999999999999863
No 32
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.14 E-value=2e-06 Score=69.53 Aligned_cols=65 Identities=32% Similarity=0.468 Sum_probs=61.5
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
.||.+.|+|++|+.. ..|++..+...|..++|+++.+|++-|...|+..|++.|+|+||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 589999999999974 68999999999999999999999999999999999999999999999875
No 33
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.14 E-value=3.5e-06 Score=67.46 Aligned_cols=65 Identities=28% Similarity=0.394 Sum_probs=60.4
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.+|..+|.|++|+. ...||++.|...+.-++|++..+|.+-|...|.+.|++. |+|+|++.|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkT----I~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT----IKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHh
Confidence 48999999999998 678999999999999999999999999999999988887 999999999863
No 34
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.06 E-value=6.7e-06 Score=66.49 Aligned_cols=65 Identities=31% Similarity=0.386 Sum_probs=60.7
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.||...|+|++|++ -..|++..+...|.-++|+.+.+|++-|...|+..|++. |+|+|+++|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkT----I~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT----VKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE----ECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHHC
Confidence 58999999999997 468999999999999999999999999999999988887 999999999875
No 35
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.85 E-value=3.4e-05 Score=67.22 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChH
Q psy7393 354 KGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE 433 (549)
Q Consensus 354 K~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPe 433 (549)
|+|.++.+++.+.+..+ +|..-|.|+++++. ..||+..+..-++-++||...+|++-|...|+..+++. |+++
T Consensus 12 ~~g~kr~~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKT----Vt~~ 84 (102)
T 1id3_B 12 KGGAKRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT----VTSL 84 (102)
T ss_dssp ------------CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHH
T ss_pred CCccchHHHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CcHH
Confidence 44545556677887777 78889999999975 47999999999999999999999999999999988887 9999
Q ss_pred HHHHHHhCC
Q psy7393 434 TVQGAALTF 442 (549)
Q Consensus 434 hLqlAI~ND 442 (549)
||..|+...
T Consensus 85 DV~~ALkr~ 93 (102)
T 1id3_B 85 DVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999865
No 36
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.78 E-value=3.1e-05 Score=67.52 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=63.7
Q ss_pred ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
+++.+.+..+ +|..-|.|+++... ..||+..+..-|..++||++.+|+.-|...|+..+++.|++++|.+|++..
T Consensus 19 ~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 19 RKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp -----CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4455666666 78888999999975 489999999999999999999999999999999999999999999998844
No 37
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.72 E-value=3e-05 Score=65.85 Aligned_cols=67 Identities=10% Similarity=0.262 Sum_probs=62.4
Q ss_pred cccccchhhhhhhhcC-CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 228 GLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 228 GLqFPVsRI~RlLke~-~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+.||.++|.|+||+. ....||++.|...|+-+.|.++.+|.+-|...|...+++.|+++||..|++
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 5789999999999997 446899999999999999999999999999999999999999999999997
No 38
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.68 E-value=4.2e-05 Score=62.93 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=60.1
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+|.+.|+|+||+..-..+|+..|...+.-+.|-+..+|-.-|...|+..+++.|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999975446799999999999999999999999999999999999999999999985
No 39
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.52 E-value=4.9e-05 Score=68.63 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=61.6
Q ss_pred cccccchhhhhhhhc-CCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcH
Q psy7393 228 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 297 (549)
Q Consensus 228 GLqFPVsRI~RlLke-~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDe 297 (549)
.+.||.++|.|+||+ .....+|+..|...|+-+.|.++.+|-..|...|...+++.|+++||..|+...+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 468999999999996 5557899999999999999999999999999999999999999999999998754
No 40
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.41 E-value=0.0003 Score=59.65 Aligned_cols=68 Identities=10% Similarity=0.232 Sum_probs=60.8
Q ss_pred cccccchhhhhHhhhcC-CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g-~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
..+.+|.++|.|++|+. .-..||++.|...++-+.|.+..+|.+-|...|...+++. |+++|+..|+.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkT----I~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT----INGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHH
Confidence 35789999999999996 3357999999999999999999999999999999888776 99999999997
No 41
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.31 E-value=0.00048 Score=56.61 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=58.1
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.+|.+.|.|+||+-.-..+|+.+|...+.-+.|-+..+|-.-|...|+..+++. |+++||+.|+.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKT----I~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKI----IKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS----BCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHH
Confidence 589999999999753467999999999999999999999999999999888776 99999999985
No 42
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.14 E-value=0.00064 Score=56.98 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=63.5
Q ss_pred ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393 223 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 296 (549)
Q Consensus 223 rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND 296 (549)
|.+..| +|..-|+|+++.+.. .||+..+..-|..++||++.+|+.-|...++..+++.|++++|..|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 344555 678889999999764 89999999999999999999999999999999999999999999999864
No 43
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.07 E-value=0.00075 Score=60.95 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=59.9
Q ss_pred ccccchhhhhHhhhc-CCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393 370 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 370 gLqFPVgRI~R~Lk~-g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe 443 (549)
.+.||+++|.|+||+ ..-..+|+..|...++-+.|.++.+|-..|...|+..+++. |+++||..|+....
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKT----I~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT----ITAKDILQTLTELD 77 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----CCHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHHcC
Confidence 578999999999996 44568999999999999999999999999999998888776 99999999998765
No 44
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.79 E-value=0.0028 Score=53.13 Aligned_cols=72 Identities=22% Similarity=0.198 Sum_probs=63.3
Q ss_pred cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393 365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe 443 (549)
|.+..| +|..-|+|+++++. ..||+..+..-++-++||...+|++-|...++..++|. |+++++..|+...-
T Consensus 5 r~~~~~--ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKT----vt~~DV~~Alk~~g 76 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT----VTAMDVVYALKRQG 76 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTTC
T ss_pred cccCCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CcHHHHHHHHHHcC
Confidence 344455 68889999999975 48999999999999999999999999999999988887 99999999998753
No 45
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.61 E-value=0.0026 Score=52.24 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=60.4
Q ss_pred ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
-.||+.-|+++.+.-.. .||+..+...|+--+||-..||++-|.+.++..|+++++++||+.|++
T Consensus 5 s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 36899999999999553 699999999999999999999999999999999999999999999975
No 46
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.33 E-value=0.0092 Score=49.01 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=59.6
Q ss_pred cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
-.||+.-|+++.+.-. ..||+..+...|+--+||-..||++-|.+.++..|+++ ++++||..|++
T Consensus 5 s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~----Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQK----LSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----ecHHHHHHHHc
Confidence 3689999999999954 47999999999999999999999999999999999997 99999999874
No 47
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.31 E-value=0.0032 Score=60.02 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=65.5
Q ss_pred cccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393 226 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303 (549)
Q Consensus 226 RAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf 303 (549)
-..+.+|.+.|.|+||+.--..||+..|...|.-|.+-++.+|-..|...|...+++.|+++||..|+. +-++..+.
T Consensus 11 ~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 345689999999999995336799999999999999999999999999999999999999999999998 43444333
No 48
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.011 Score=58.40 Aligned_cols=169 Identities=22% Similarity=0.194 Sum_probs=104.4
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc-----------------CcHHHHhhhcCce--
Q psy7393 247 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR-----------------NDEELNKLLSGVT-- 307 (549)
Q Consensus 247 ~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~-----------------NDeEL~~Lfk~vt-- 307 (549)
.|..++|...|--+-|...-.++|-+.--|...++..|.|+++++|-+ +|.-|...|.+++
T Consensus 35 lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~~p~evme~~~~~~~~~k~~~~~i~~k 114 (235)
T 2l5a_A 35 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSNIISK 114 (235)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCCCCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888887777877777888887777777888999999999843 2222222221110
Q ss_pred ---eccccccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhc
Q psy7393 308 ---IAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRK 384 (549)
Q Consensus 308 ---Is~GGVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~ 384 (549)
|..-|-.+- .+...++-||+-. .+|+..+.. +...++..+.-|.-++ ++ +.|+.++
T Consensus 115 y~~~~~~gd~id------------l~tG~iv~dnGh~-----~~l~~~~~~-~~~~~r~~~vLrD~i~--i~-~~RlaRr 173 (235)
T 2l5a_A 115 YESIEEQGDLVD------------LKTGEIVEDNGHI-----KTLTANNST-KDKRTKYTSVLRDIID--IS-DEEDGDK 173 (235)
T ss_dssp HTTCCCCSCCCS------------SSSCCCCCCCCCC-----CSCCCCCGG-GCCSSTHHHHHHHHHH--HT-CCTTSCC
T ss_pred HhcccCCCCccc------------CCCCceeeeCcHH-----HHhhcCCCC-CccchhHHHHHHHhhc--cc-HHHHhhc
Confidence 000010000 0111222233222 133322110 1111111222222333 22 5588888
Q ss_pred CCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 385 GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 385 g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
+. ..|||..+...+..+||....+|+.-|...|...++|. |+++++.+|+..
T Consensus 174 gG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKT----Vta~DV~~ALKr 225 (235)
T 2l5a_A 174 GG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT----VTSLDVVYALKR 225 (235)
T ss_dssp TT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----CCHHHHHHHHHH
T ss_pred CC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CcHHHHHHHHHh
Confidence 65 58999999999999999999999999999999888776 999999999863
No 49
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=95.45 E-value=0.011 Score=53.58 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=59.1
Q ss_pred ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
-.|.+ .|+|.|++-.-...|++.|.-.|-..++.++..|..-|...|+-++++.|++++||.|++
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45766 899999996656689999999999999999999999999999999999999999999986
No 50
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.45 E-value=0.017 Score=50.95 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=60.5
Q ss_pred ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHH
Q psy7393 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 299 (549)
Q Consensus 229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL 299 (549)
+-+|-+-|.|+++++ -..||+..+...|.-+++.++.+|..-|...|+..|++.|+++||.+|++.+..+
T Consensus 6 ~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 6 PEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp ----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 468899999999997 4579999999999999999999999999999999999999999999999876443
No 51
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=95.41 E-value=0.022 Score=51.66 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=57.3
Q ss_pred cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
-.|.+ .|++.||.-.-..+|++.|--.|...++.+...|-.-|...|+.++++. |++++||.|++-
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~T----itsreIqtAvrL 101 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST----ITSREIQTAVRL 101 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHH
Confidence 34666 8999999965456899999999999999999999999999999988886 999999999853
No 52
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.34 E-value=0.018 Score=50.73 Aligned_cols=74 Identities=9% Similarity=-0.014 Sum_probs=61.7
Q ss_pred ccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccc
Q psy7393 370 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDV 448 (549)
Q Consensus 370 gLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L 448 (549)
.+.+|-+-|.|++|++ -..|||..+...+.-+++.++.+|..-|...|+..++|. |+++|+.+|++....+...
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKT----V~~eDV~lalrr~g~~~~~ 78 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKT----VEMADVELLMRRQGLVTDK 78 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHHTTSSBTT
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHHHCCCcccc
Confidence 3468999999999997 467999999999999999999999999999999888876 9999999999887765543
No 53
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=95.31 E-value=0.027 Score=50.94 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=55.6
Q ss_pred cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
|. ..|++.||+-.-..+|++.|--.|...++.+...|-.-|...|+.++++. |++++||.|++-
T Consensus 35 y~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~T----itsreIqtAvrL 98 (123)
T 2nqb_D 35 YA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRST----ITSREIQTAVRL 98 (123)
T ss_dssp SH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE----ECHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CCHHHHHHHHHH
Confidence 55 37999999965556899999999999999999999999999999888876 999999999853
No 54
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=95.31 E-value=0.013 Score=52.98 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=58.0
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.|. ..|+|.|++-.-...|++.|.-.|-..++.++..|..-|...|+-++++.|++++||.||+
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 455 5799999996656689999999999999999999999999999999999999999999986
No 55
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.06 E-value=0.036 Score=52.83 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=60.2
Q ss_pred cccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
..+.+|++.|.|+||+.--..||+..|...|+-+.+-++.+|--.|...|+..++|. |+++||..|+.
T Consensus 12 eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKT----I~~eDVl~Al~ 79 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKT----ISPEHVIQALE 79 (179)
T ss_dssp CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHH
Confidence 467899999999999952267999999999999999999999888988898887776 99999999987
No 56
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.029 Score=48.09 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=56.3
Q ss_pred cccccccchhhhhhh-hcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393 226 RAGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 304 (549)
Q Consensus 226 RAGLqFPVsRI~RlL-ke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk 304 (549)
|+.|.+-|++|-.-. +++ ...++..+...|+.+++..+.+|.+-+...|+.-|++.|++++|.++++.++.|..+++
T Consensus 11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 456777787765433 222 23466666666666666666666666666788899999999999999999999999876
Q ss_pred C
Q psy7393 305 G 305 (549)
Q Consensus 305 ~ 305 (549)
+
T Consensus 89 ~ 89 (90)
T 3v9r_A 89 Q 89 (90)
T ss_dssp C
T ss_pred c
Confidence 5
No 57
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.70 E-value=0.048 Score=44.50 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=54.9
Q ss_pred hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
-|+|+|++.. ..|++..++.-|.-.+|-.+.+|+.-|...|+..|++.|+.++|++||+.
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4789999955 47999999999999999999999999999999999999999999999864
No 58
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.60 E-value=0.098 Score=42.67 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=54.0
Q ss_pred hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
-|+++||+.. ..|++..++..|.-.++-.+.+|++-|...|+.-+++. |+.+++++||..
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrkt----v~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKT----IDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHh
Confidence 5889999954 57999999999999999999999999999999888776 999999999964
No 59
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=93.24 E-value=0.054 Score=47.76 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=61.9
Q ss_pred cccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393 226 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 304 (549)
Q Consensus 226 RAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk 304 (549)
|+.|.|-|+||-+---. ....|++..+...|+-+++..+.+|..-+...|+.-|++.|++++|.+|++.++.|...++
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 56778888776553322 1235888888888888888888888888888899999999999999999999999877664
No 60
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=93.24 E-value=0.054 Score=48.29 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=61.2
Q ss_pred ccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393 225 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 304 (549)
Q Consensus 225 sRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk 304 (549)
=|+.|.+.|+||-+-.-..+ ...|+..+...|+-+++..+.+|.+-+...|+--|++.|++++|.++++.++.|..+++
T Consensus 25 LKaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~ 103 (113)
T 4dra_A 25 LKAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYIT 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 36788899888754332211 22477777777777777777777777777788899999999999999999999988775
Q ss_pred C
Q psy7393 305 G 305 (549)
Q Consensus 305 ~ 305 (549)
+
T Consensus 104 ~ 104 (113)
T 4dra_A 104 D 104 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=91.56 E-value=0.16 Score=43.30 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=53.1
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 294 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~ 294 (549)
.||=..|+|+++. .....|+....+.|+++--.++.||+|.|....... ....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 3666678899877 356789999999999999999999999998886544 456899999998865
No 62
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=91.12 E-value=0.13 Score=47.37 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=61.8
Q ss_pred ccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393 225 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 304 (549)
Q Consensus 225 sRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk 304 (549)
=|+.|.|-|++|-.-.-.. ....|+..+...|+-+++..+.+|..-+-..|+.-|++.|++.+|.++++.++.|..+++
T Consensus 17 LKaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~ 95 (140)
T 3vh5_A 17 LRAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 3567888888875533221 124677777777777777777777777777788899999999999999999999998886
Q ss_pred C
Q psy7393 305 G 305 (549)
Q Consensus 305 ~ 305 (549)
+
T Consensus 96 ~ 96 (140)
T 3vh5_A 96 Q 96 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.33 Score=41.54 Aligned_cols=77 Identities=9% Similarity=-0.086 Sum_probs=58.5
Q ss_pred ccccccchhhhhHhh-hcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccc
Q psy7393 368 RAGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVD 446 (549)
Q Consensus 368 RAgLqFPVgRI~R~L-k~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~ 446 (549)
|+.|.|-|++|-.-. +++ ...|+..+...|+-+++..+.+|.+=+...|+.-+++. |+++++.++++.++.|.
T Consensus 11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkT----I~~eDV~L~~Rrn~~L~ 84 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGV----VNKSDLMLYLRKQPDLQ 84 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHhChHHH
Confidence 467788888876433 332 23577777777777777777777777778888888776 99999999999999988
Q ss_pred cccC
Q psy7393 447 DVHG 450 (549)
Q Consensus 447 ~L~g 450 (549)
.++.
T Consensus 85 ~~l~ 88 (90)
T 3v9r_A 85 ERVT 88 (90)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 7764
No 64
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=89.97 E-value=0.26 Score=41.57 Aligned_cols=64 Identities=22% Similarity=0.130 Sum_probs=53.1
Q ss_pred ccchhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 231 FPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 231 FPVsRI~RlLke~~------ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
+|---|.|++|+-. ...|++++|...|--+.|.....+.|-+..-|...|+..|.|++|++|.+
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 44444666666622 35699999999999999999999999998889888999999999999865
No 65
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=89.87 E-value=0.31 Score=40.69 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=53.2
Q ss_pred cccchhhhhhhhcC----CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 230 QFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 230 qFPVsRI~RlLke~----~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
-+|.-=|.|++|+- .-..|++++|...|--+.|....++.|-+..-|...|+..|.|++|++|.+
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 34555556666652 124799999999999999999999999998889889999999999999865
No 66
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=89.67 E-value=0.58 Score=39.50 Aligned_cols=64 Identities=20% Similarity=0.010 Sum_probs=51.7
Q ss_pred cchhhhhHhhhcCC------ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 373 FPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 373 FPVgRI~R~Lk~g~------ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
+|.--+.|+.|+-. ...|++++|...|--..|.....+.|-+..-|...|++. |.|+++++|.+
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvT----i~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT----LFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CcHHHHHHHHH
Confidence 34444556666521 357999999999999999999999999999888878776 99999999964
No 67
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.35 E-value=0.47 Score=39.90 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=56.5
Q ss_pred cccccchhhhhhhhcC--CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393 228 GLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 292 (549)
Q Consensus 228 GLqFPVsRI~RlLke~--~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA 292 (549)
+-.||..-|.|+|+.. ....||++.|...++..|+-++.|.+.+|..+|+..+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 4579999999999982 2346999999999999999999999999999998888889999999863
No 68
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=89.20 E-value=0.57 Score=39.76 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.3
Q ss_pred ccccccchhhhhhhhcCC--cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393 227 AGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 292 (549)
Q Consensus 227 AGLqFPVsRI~RlLke~~--ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA 292 (549)
++..||..-|.|+|+..- ..-||+..|-..++..|+-++.|.+-+|...|...+...|.++||+..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 466899999999999632 346999999999999999999999999999998877888999999863
No 69
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=88.97 E-value=0.72 Score=38.46 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=52.1
Q ss_pred ccchhhhhHhhhcC----CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 372 QFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 372 qFPVgRI~R~Lk~g----~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
-+|.--+.|++|+- ....|++++|...|.-..|....++.|-+..-|..-|++. |.|+++++|.+
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvT----i~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT----IMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CcHhhHHHHHH
Confidence 34555555666652 1357999999999999999888999999999888888776 99999999974
No 70
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=88.81 E-value=0.3 Score=43.08 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccc
Q psy7393 368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDD 447 (549)
Q Consensus 368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~ 447 (549)
|+.|.|-|+||-+---. ....|++..+...|+-+++..+.+|..-+...|+.-+++. |+++++.++++.++.+..
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkT----I~~eDV~La~Rrn~~l~~ 92 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRST----ITSEDVKLLARRSNSLLK 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----CCHHHHHHHHHhCHHHHH
Confidence 56788888887654322 1235899999999998888888889888888998888776 999999999999988765
Q ss_pred cc
Q psy7393 448 VH 449 (549)
Q Consensus 448 L~ 449 (549)
.+
T Consensus 93 ~l 94 (107)
T 3b0b_B 93 YI 94 (107)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 71
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=88.02 E-value=0.41 Score=44.10 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=59.2
Q ss_pred ccccccchhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 227 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 227 AGLqFPVsRI~RlLke~~------ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+|-+|.--|.|+++|-. ...|+.++|...|--+.|.....+.|-+..-|...++..|+|++|++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 478888888889888733 25799999999999999999999999998888888999999999999865
No 72
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=87.85 E-value=0.32 Score=45.51 Aligned_cols=69 Identities=22% Similarity=0.115 Sum_probs=59.5
Q ss_pred ccccccchhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 227 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 227 AGLqFPVsRI~RlLke~~------ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
.+|-+|.--|.|+++|-. ...|+.+.|...|--+.|.....++|-|...|...++..|+|++|++|.+=
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 468888888889888732 246999999999999999999999999988888889999999999999763
No 73
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=87.57 E-value=0.77 Score=41.32 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=46.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 246 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 246 a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
..|||..+-.-+..+||.+..+|+.-|...+...++|.|+..+|..|++
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999876
No 74
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=87.37 E-value=0.56 Score=46.44 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=53.8
Q ss_pred hhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 236 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 236 I~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
+.|+.+.+. ..|||..+..-+..+||.+..+|+.-|...|...++|.|++.+|.+|++.
T Consensus 167 ~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 557888865 48999999999999999999999999999999999999999999999874
No 75
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=87.14 E-value=0.46 Score=42.36 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=60.0
Q ss_pred ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccc
Q psy7393 368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDD 447 (549)
Q Consensus 368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~ 447 (549)
|+.|.|.|+||-+---.. ....|+..+...|+-+++..+.+|..-+...|+.-+++. |++++|.++++.++.|..
T Consensus 26 Kaal~y~V~rIvke~gae-r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkT----I~~eDV~La~Rr~~~L~~ 100 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALD-KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTT----INTEDVKLLARRSNSLLK 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCHHHHHHHHHhCHHHHH
Confidence 577899988876433221 122488888888888888888888888888888888776 999999999999988876
Q ss_pred ccC
Q psy7393 448 VHG 450 (549)
Q Consensus 448 L~g 450 (549)
.+.
T Consensus 101 ~l~ 103 (113)
T 4dra_A 101 YIT 103 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 76
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=86.83 E-value=0.7 Score=43.29 Aligned_cols=68 Identities=21% Similarity=0.017 Sum_probs=57.7
Q ss_pred cccccchhhhhHhhhcCC------ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~------ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.+|-+|.--+.|++++-. ...|+.++|...|.-+.|....+++|-|...|..-|++. |.|++|++|.+
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVT----Im~kDIqLArr 147 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT----LFPKDVQLARR 147 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE----ECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----ccHHHHHHHHH
Confidence 468888888888888732 246999999999999999999999999988888877776 99999999974
No 77
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=86.44 E-value=0.86 Score=41.98 Aligned_cols=68 Identities=21% Similarity=0.017 Sum_probs=57.6
Q ss_pred cccccchhhhhHhhhcCC------ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~------ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.+|-+|.--+.|++++-. ...|++++|...|.-+.|....+++|-|..-|..-|++. |.|+|+++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVT----Im~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT----LFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----ccHHHHHHHHH
Confidence 467888888888888732 357999999999999999999999999988888877776 99999999974
No 78
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=86.16 E-value=1.4 Score=37.53 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=52.6
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.||=..|+|++..- ....|+.+..+.++++--.++.||.|.|..+........ -|.|+||+-|.+.
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~---Pl~P~HireA~rr 81 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP---PLQPKHMREAVRR 81 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHHHHHHHH
Confidence 36666788888763 466899999999999999999999999999876543321 4999999998753
No 79
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=85.83 E-value=0.57 Score=40.83 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=55.7
Q ss_pred ccccccchhhhhhhhcCC--c-----ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 227 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 227 AGLqFPVsRI~RlLke~~--y-----a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+|-+|..-|.|++++-. + ..|+.++|...|.-+.|.....+.|-+..-|...|+..|.|++|++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 477888888888888732 2 5699999999999999999999999998889889999999999999864
No 80
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=84.90 E-value=0.81 Score=41.90 Aligned_cols=68 Identities=25% Similarity=0.249 Sum_probs=59.0
Q ss_pred ccccccchhhhhhhhcCC----cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393 227 AGLQFPVGRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 294 (549)
Q Consensus 227 AGLqFPVsRI~RlLke~~----ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ 294 (549)
.+|-+|.--|.|+++|-. -..|+.++|...|.-+.|....++.|-+..-|...++..|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 467788888888888731 24799999999999999999999999998889889999999999999864
No 81
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=84.63 E-value=1.2 Score=38.77 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=54.7
Q ss_pred cccccchhhhhHhhhcCC--c-----cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g~--y-----a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.+|-+|.--+.|+.++-. + ..|++++|...|.-+.|....+++|-+..-|..-|++. |.|+|+++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvT----i~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRIT----IMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CCHHHHHHHHH
Confidence 468888888888888731 2 56999999999999999999999999999888888776 99999999964
No 82
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=83.94 E-value=2.2 Score=38.41 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=45.9
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 388 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 388 a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
..|||+.+..-+..+||....+|+.-|...++..++|. |+.+|+..|++.
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKT----Vta~DV~~Alkr 111 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT----VTSLDVVYALKR 111 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CcHHHHHHHHHh
Confidence 57999999999999999999999999999999888776 999999999854
No 83
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=83.73 E-value=1.7 Score=39.81 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=57.8
Q ss_pred cccccchhhhhHhhhcC----CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393 369 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL 440 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g----~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ 440 (549)
.+|-+|.--+.|++++- ....|++++|...|.-..|....+++|-+..-|..-|++. |.|+|+++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvT----i~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVT----IMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CcHHhHHHHHH
Confidence 36788888888888874 1257999999999999999999999999999888888776 99999999974
No 84
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=82.57 E-value=0.95 Score=41.72 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=61.3
Q ss_pred ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccc
Q psy7393 368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDD 447 (549)
Q Consensus 368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~ 447 (549)
|+.|.|-|++|-.-.-.. ....|+..+...|+-+++..+.+|..=+-..|+.-+++. |++++|.++++.++.|..
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKT----I~~eDVkLa~Rrn~~L~~ 92 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRST----ITSEDVKLLARRSNSLLK 92 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHhCHHHHH
Confidence 567888888886543221 134688888888888888888888888888888888776 999999999999998887
Q ss_pred ccC
Q psy7393 448 VHG 450 (549)
Q Consensus 448 L~g 450 (549)
.+.
T Consensus 93 ~L~ 95 (140)
T 3vh5_A 93 YIT 95 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 85
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=81.63 E-value=4.2 Score=34.44 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=53.3
Q ss_pred cccccchhhhhHhhhcC--CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393 369 AGLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA 438 (549)
Q Consensus 369 AgLqFPVgRI~R~Lk~g--~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA 438 (549)
++..||-.-|.|+|+.. +-.-||+.+|-.-++..|+-++.|-+-.|...|+...... |.++|++..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~----le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALR----VDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccHHHHHHH
Confidence 46689999999999963 1346999999999999999999999999998888644443 899999874
No 86
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=80.77 E-value=3.7 Score=34.45 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=53.6
Q ss_pred ccccchhhhhHhhhcC--CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393 370 GLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA 438 (549)
Q Consensus 370 gLqFPVgRI~R~Lk~g--~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA 438 (549)
.-.||-.-|+|+|+.. +-.-||+++|-.-++..|+-++.|-+..|...|+...... |.++|++..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~----le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEK----VDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe----ecHHHHHHH
Confidence 3469999999999972 2346999999999999999999999999999887655443 899999974
No 87
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=64.25 E-value=4.7 Score=34.73 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcC
Q psy7393 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 305 (549)
Q Consensus 265 taEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~ 305 (549)
+.++|+.|-+.|+..+...|+|+||-+|+-.+++...+++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~ 46 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHH
Confidence 46789999999999999999999999999988876666654
No 88
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=51.00 E-value=8.7 Score=33.14 Aligned_cols=33 Identities=30% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhhhhcCcH
Q psy7393 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 297 (549)
Q Consensus 265 taEILELAGn~Ar~~kkkRITPrHI~lAI~NDe 297 (549)
+.++|+.|-+.|+..+...|+|+||-+|+-+++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357899999999999999999999999987765
No 89
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=48.44 E-value=6.5 Score=34.48 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhhhhcCcH--HHHhhhc
Q psy7393 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 304 (549)
Q Consensus 265 taEILELAGn~Ar~~kkkRITPrHI~lAI~NDe--EL~~Lfk 304 (549)
+.++|+.|-+.|+..+...|+|+||-+|+-.++ ....+++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 467899999999999999999999999998664 3444443
No 90
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=47.31 E-value=7.8 Score=33.60 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHH--HHhhhc
Q psy7393 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 304 (549)
Q Consensus 265 taEILELAGn~Ar~~kkkRITPrHI~lAI~NDeE--L~~Lfk 304 (549)
+.++|+.|-+.|+..+...|+|+||-+|+-.+++ ...+++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 3578999999999999999999999999976654 445553
No 91
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=45.55 E-value=7.8 Score=33.92 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhhhhcCc--HHHHhhhc
Q psy7393 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLS 304 (549)
Q Consensus 265 taEILELAGn~Ar~~kkkRITPrHI~lAI~ND--eEL~~Lfk 304 (549)
+.++|+.|-+.|+..+...|+|+||-+|+-.+ .....+++
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 46789999999999999999999999999765 33445554
No 92
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=44.89 E-value=23 Score=30.44 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=28.6
Q ss_pred HHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcc
Q psy7393 408 AEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFER 444 (549)
Q Consensus 408 aEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeE 444 (549)
.++|+.|-+.|+..+..- |+|+|+-+|+..+++
T Consensus 11 ~~~l~~A~~~A~~~~~~~----i~~eHlLlaLl~~~~ 43 (148)
T 1khy_A 11 QLALADAQSLALGHDNQF----IEPLHLMSALLNQEG 43 (148)
T ss_dssp HHHHHHHHHHHHHTTCSS----BCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHcCCCc----cCHHHHHHHHHcCCC
Confidence 578999999999887775 999999999988763
No 93
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=42.26 E-value=53 Score=27.18 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=55.7
Q ss_pred ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT 441 (549)
Q Consensus 372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N 441 (549)
.++-.+++.++++-.-...+...+--.|.-+-+-++..|++.|+..||..+... +.++++++....
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~----le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSST----LEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE----ECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----ccHHHHHHHHHh
Confidence 456678888888855567888889999999999999999999999999988775 899999987654
No 94
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=40.38 E-value=33 Score=28.40 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=56.3
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 295 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N 295 (549)
.++-.++..++++-.-...+...+--.|.-+-+-++..+++.|...|+..+...+.++++++.+..
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 355567888888855567888889999999999999999999999999988899999999987653
No 95
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=40.28 E-value=15 Score=33.89 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhcCCcccchhhhhhhhcCcH--HHHhhhc
Q psy7393 257 LAAVMEYLA---AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 304 (549)
Q Consensus 257 LAAVLEYLt---aEILELAGn~Ar~~kkkRITPrHI~lAI~NDe--EL~~Lfk 304 (549)
+..+++-++ .++|+.|.+.|+..+...|.|+||-+|+-.++ ....+++
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 455555554 67899999999999999999999999998764 3445553
No 96
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=38.54 E-value=16 Score=31.88 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.5
Q ss_pred HHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393 407 AAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 407 taEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe 443 (549)
+.++|+.|.+.|+..+... |+|+|+-+|+..++
T Consensus 12 a~~~l~~A~~~A~~~~~~~----i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNI----VGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCC----ccHHHHHHHHHhCC
Confidence 3578999999999988775 99999999998765
No 97
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=38.43 E-value=20 Score=31.31 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393 408 AEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE 443 (549)
Q Consensus 408 aEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe 443 (549)
.++|+.|.+.|+..+... |+|+|+-+|+..++
T Consensus 12 ~~~l~~A~~~A~~~~~~~----i~~eHLLlaLl~~~ 43 (146)
T 3fh2_A 12 RRVIVLAQEEARMLNHNY----IGTEHILLGLIHEG 43 (146)
T ss_dssp HHHHHHHHHHHHHTTCSS----BCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCC----chHHHHHHHHHhCC
Confidence 578999999999888775 99999999998753
No 98
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=37.16 E-value=19 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccC
Q psy7393 407 AAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHG 450 (549)
Q Consensus 407 taEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~g 450 (549)
+.++|+.|-+.|+..+..- |+|+|+-+|+..+++...++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~----i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEF----MTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSE----ECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC----cCHHHHHHHHHcCchHHHHHH
Confidence 3578999999999887764 999999999998876555554
No 99
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=32.27 E-value=24 Score=30.47 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcc
Q psy7393 408 AEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFER 444 (549)
Q Consensus 408 aEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeE 444 (549)
.++|+.|-+.|+..+... |+|+|+-+|+..+++
T Consensus 11 ~~al~~A~~~A~~~~h~~----i~~eHlLlaLl~~~~ 43 (150)
T 2y1q_A 11 QKVLALAQEEALRLGHNN----IGTEHILLGLVREGE 43 (150)
T ss_dssp HHHHHHHHHHHHHTTCSE----ECHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCCC----ccHHHHHHHHHhCCC
Confidence 578999999999888774 999999999987654
No 100
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=31.74 E-value=36 Score=31.26 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHHHHH---HHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcc
Q psy7393 398 YLAAVMEYLA---AEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFER 444 (549)
Q Consensus 398 YLAAVLEYLt---aEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeE 444 (549)
.+...++.+| .++|+.|.+.|+..+..- |.|+|+-+|+..+++
T Consensus 17 ~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~----I~~EHLLlaLL~~~~ 62 (171)
T 3zri_A 17 ELPTLIAKLNAQSKLALEQAASLCIERQHPE----VTLEHYLDVLLDNPL 62 (171)
T ss_dssp CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSE----ECHHHHHHHHTTCTT
T ss_pred hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCc----ccHHHHHHHHHHccC
Confidence 3555555554 468999999999888775 999999999988753
No 101
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=28.00 E-value=77 Score=29.44 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=49.0
Q ss_pred cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhh
Q psy7393 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 291 (549)
Q Consensus 230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~l 291 (549)
.+++.+++|++++. -.--|.++-.-=+..++|-=..+++..|-..|+.|++.-|.|.|+-.
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 46889999999983 23345566666677888888899999999999999999999999864
No 102
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.48 E-value=56 Score=35.75 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 304 (549)
Q Consensus 265 taEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk 304 (549)
+.++|+.|-+.|+..+...|+|+||-+|+-.|.+...+++
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999999999998877666654
Done!