RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7393
(549 letters)
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional.
Length = 134
Score = 210 bits (536), Expect = 5e-66
Identities = 88/118 (74%), Positives = 99/118 (83%), Gaps = 3/118 (2%)
Query: 207 MSGRGKGGKAKAKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEY 263
G+GK G KA K +RS++AGLQFPVGR+HR L+KG YA+RVGAGAPVYLAAV+EY
Sbjct: 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEY 60
Query: 264 LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
L AEVLELAGNAA+DNKK RI PRH+QLAIRNDEELNKLL+GVTIA GGVLPNI L
Sbjct: 61 LTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVL 118
Score = 136 bits (344), Expect = 4e-38
Identities = 55/79 (69%), Positives = 64/79 (81%), Gaps = 3/79 (3%)
Query: 349 MSGRGKGGKTKTKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEY 405
G+GK G K K +RS++AGLQFPVGR+HR L+KG YA+RVGAGAPVYLAAV+EY
Sbjct: 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEY 60
Query: 406 LAAEVLELAGNAARDNKKT 424
L AEVLELAGNAA+DNKK
Sbjct: 61 LTAEVLELAGNAAKDNKKK 79
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 205 bits (523), Expect = 2e-64
Identities = 90/109 (82%), Positives = 97/109 (88%)
Query: 213 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 272
GGK K+K ++RS+RAGLQFPVGRIHR L+KG YAERVGAGAPVYLAAV+EYL AEVLELA
Sbjct: 3 GGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELA 62
Query: 273 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
GNAARDNKK RI PRHLQLA+RNDEELNKLL GVTIA GGVLPNI L
Sbjct: 63 GNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKVL 111
Score = 133 bits (337), Expect = 3e-37
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 355 GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 414
GGK K+K ++RS+RAGLQFPVGRIHR L+KG YAERVGAGAPVYLAAV+EYL AEVLELA
Sbjct: 3 GGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELA 62
Query: 415 GNAARDNKKT 424
GNAARDNKK
Sbjct: 63 GNAARDNKKK 72
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional.
Length = 132
Score = 199 bits (507), Expect = 8e-62
Identities = 89/117 (76%), Positives = 101/117 (86%), Gaps = 2/117 (1%)
Query: 207 MSGRGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264
MSGRGK GG K+ +RS++AGLQFPVGRI R L+ G YA RVGAGAPVYLAAV+EYL
Sbjct: 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYL 60
Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
AAEVLELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL GVTIA GGVLPNI + L
Sbjct: 61 AAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVL 117
Score = 131 bits (331), Expect = 2e-36
Identities = 59/78 (75%), Positives = 66/78 (84%), Gaps = 2/78 (2%)
Query: 349 MSGRGK--GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
MSGRGK GG K+ +RS++AGLQFPVGRI R L+ G YA RVGAGAPVYLAAV+EYL
Sbjct: 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYL 60
Query: 407 AAEVLELAGNAARDNKKT 424
AAEVLELAGNAARDNKK+
Sbjct: 61 AAEVLELAGNAARDNKKS 78
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 189 bits (483), Expect = 1e-58
Identities = 88/100 (88%), Positives = 92/100 (92%)
Query: 222 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 281
+RS+RAGLQFPVGRIHRLLRKG YA+RVGAGAPVYLAAV+EYL AEVLELAGNAARDNKK
Sbjct: 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60
Query: 282 TRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
RI PRHLQLAIRNDEELNKLL GVTIAQGGVLPNI L
Sbjct: 61 RRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHKVL 100
Score = 120 bits (304), Expect = 7e-33
Identities = 54/61 (88%), Positives = 58/61 (95%)
Query: 364 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
+RS+RAGLQFPVGRIHRLLRKG YA+RVGAGAPVYLAAV+EYL AEVLELAGNAARDNKK
Sbjct: 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60
Query: 424 T 424
Sbjct: 61 R 61
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional.
Length = 139
Score = 176 bits (447), Expect = 6e-53
Identities = 87/117 (74%), Positives = 99/117 (84%), Gaps = 1/117 (0%)
Query: 206 TMSGRGKGGKAKA-KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264
+ + +G GK KA KS +RSS+AGLQFPVGRI R L+ G YAERVGAGAPVYL+AV+EYL
Sbjct: 4 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 63
Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
AAEVLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI L
Sbjct: 64 AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTL 120
Score = 116 bits (292), Expect = 9e-31
Identities = 58/78 (74%), Positives = 66/78 (84%), Gaps = 1/78 (1%)
Query: 348 TMSGRGKGGKTK-TKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
+ + +G GK K TKS +RSS+AGLQFPVGRI R L+ G YAERVGAGAPVYL+AV+EYL
Sbjct: 4 SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 63
Query: 407 AAEVLELAGNAARDNKKT 424
AAEVLELAGNAARDNKK
Sbjct: 64 AAEVLELAGNAARDNKKN 81
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 173 bits (441), Expect = 3e-52
Identities = 90/115 (78%), Positives = 99/115 (86%), Gaps = 2/115 (1%)
Query: 209 GRGKGGKAKA--KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
GKGGKA S++RS++AGL FPVGR+ RLL+KGNY R+GAGAPVYLAAV+EYLAA
Sbjct: 3 SGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAA 62
Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
E+LELAGNAARDNKK RIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNI GL
Sbjct: 63 EILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGL 117
Score = 108 bits (271), Expect = 5e-28
Identities = 54/76 (71%), Positives = 63/76 (82%), Gaps = 2/76 (2%)
Query: 351 GRGKGGKT--KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 408
GKGGK S++RS++AGL FPVGR+ RLL+KGNY R+GAGAPVYLAAV+EYLAA
Sbjct: 3 SGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAA 62
Query: 409 EVLELAGNAARDNKKT 424
E+LELAGNAARDNKK
Sbjct: 63 EILELAGNAARDNKKK 78
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional.
Length = 129
Score = 166 bits (420), Expect = 3e-49
Identities = 88/115 (76%), Positives = 99/115 (86%)
Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
M+GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL A
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTA 60
Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
EVLELAGNAARDNKK RI+PRH+QLAIRNDEEL KLL VTIA GGVLPNI A L
Sbjct: 61 EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVL 115
Score = 110 bits (276), Expect = 8e-29
Identities = 57/75 (76%), Positives = 66/75 (88%)
Query: 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 408
M+GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL A
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTA 60
Query: 409 EVLELAGNAARDNKK 423
EVLELAGNAARDNKK
Sbjct: 61 EVLELAGNAARDNKK 75
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional.
Length = 136
Score = 136 bits (344), Expect = 3e-38
Identities = 73/117 (62%), Positives = 85/117 (72%), Gaps = 2/117 (1%)
Query: 206 TMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYL 264
T + K K K K +RSSRAGLQFPVGRIHR L++ A RVGA A VY AA++EYL
Sbjct: 14 TTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYL 73
Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L
Sbjct: 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 129
Score = 89.6 bits (222), Expect = 3e-21
Identities = 47/76 (61%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 348 TMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYL 406
T + K K K K +RSSRAGLQFPVGRIHR L++ A RVGA A VY AA++EYL
Sbjct: 14 TTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYL 73
Query: 407 AAEVLELAGNAARDNK 422
AEVLELAGNA++D K
Sbjct: 74 TAEVLELAGNASKDLK 89
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional.
Length = 134
Score = 108 bits (272), Expect = 3e-28
Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 215 KAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGN 274
KA RS++AGL FPVGR+ LLR+G YA R+GA VY+AAV+EYL AE+LEL+
Sbjct: 10 KASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVK 69
Query: 275 AARDN--KKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
AA K R+ PR + LA+R+D++L LL VT+++GGV+P++ L
Sbjct: 70 AAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKAL 118
Score = 76.5 bits (188), Expect = 1e-16
Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 357 KTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGN 416
K RS++AGL FPVGR+ LLR+G YA R+GA VY+AAV+EYL AE+LEL+
Sbjct: 10 KASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVK 69
Query: 417 AA-RDNKKTHSWWCLTAETVQGAA 439
AA + KK LT TV A
Sbjct: 70 AAAQQAKKPKR---LTPRTVTLAV 90
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 94.2 bits (235), Expect = 1e-23
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 223 RSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 281
S L+ P R+ R L++G YAE R+ + APV L +E L E+LE AG AR K+
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 282 TRIIPRHLQLAIRND 296
I PR +QLA+R D
Sbjct: 61 KTITPRDIQLAVRLD 75
Score = 73.7 bits (182), Expect = 2e-16
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 365 RSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
S L+ P R+ R L++G YAE R+ + APV L +E L E+LE AG AR K+
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 424 T 424
Sbjct: 61 K 61
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional.
Length = 58
Score = 82.1 bits (202), Expect = 1e-19
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
M+GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
Score = 82.1 bits (202), Expect = 2e-19
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264
M+GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit
(DRAP1 homolog) [Transcription].
Length = 113
Score = 44.2 bits (104), Expect = 1e-05
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
+FP+ R+ ++++ +VG PV + +E E++ L+ AR R+ L
Sbjct: 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFL 82
Query: 290 QLAIRNDEELNKLLSGVTIAQG 311
+ A +DE+ + L +
Sbjct: 83 KRATESDEKFDFLKNMEQFKNR 104
Score = 34.2 bits (78), Expect = 0.043
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 342 PIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAA 401
P+ TM + ++ K KTR FP+ R+ ++++ +VG PV +
Sbjct: 4 PVGNMGTMPKQ----NSQKKKKTR-------FPIARLKKIMQLDEDIGKVGQSTPVIASK 52
Query: 402 VMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVD 446
+E E++ L+ AR S +T+E ++ A + E+ D
Sbjct: 53 ALEMFLTEIVGLSLKEAR----KKSSKRMTSEFLKRATESDEKFD 93
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor
(CBF/NF-Y) and archaeal histone. This family includes
archaebacterial histones and histone like transcription
factors from eukaryotes.
Length = 65
Score = 37.2 bits (87), Expect = 0.001
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVME----YLAAEVLELAGNAARDNKKTRIIP 286
P+ R+ R+++ A R+ A +A +E ++A+E E+ ++ +KT I
Sbjct: 3 LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICK---KEKRKT-INA 58
Query: 287 RHLQLAI 293
H++LA+
Sbjct: 59 EHIKLAV 65
Score = 33.4 bits (77), Expect = 0.024
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVME----YLAAEVLELAGNAARDNKKT---- 424
P+ R+ R+++ A R+ A +A +E ++A+E E+ ++ +KT
Sbjct: 3 LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICK---KEKRKTINAE 59
Query: 425 HSWWCL 430
H +
Sbjct: 60 HIKLAV 65
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 30.4 bits (69), Expect = 1.7
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 268 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI 327
+L++ + +K + P + + + + L + L Q + + EF
Sbjct: 97 ILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQ- 155
Query: 328 TISLFSFVFDN 338
+LF ++ N
Sbjct: 156 HYALFDYIIVN 166
>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
A subgroup of AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
AraC regulators are defined by a AraC-type
helix-turn-helix DNA binding domain at their C-terminal.
AraC family transcriptional regulators are widespread
among bacteria and are involved in regulating diverse
and important biological functions, including carbon
metabolism, stress responses and virulence in different
microorganisms. The catalytic triad typical of GATase1
domains is not conserved in this GATase1-like domain.
However, in common with typical GATase1domains a
reactive cys residue is found in the sharp turn between
a beta strand and an alpha helix termed the nucleophile
elbow.
Length = 187
Score = 28.6 bits (65), Expect = 5.7
Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 26/136 (19%)
Query: 41 FLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLE 100
F G D +G +V G +LG ++RV ++ G +L A GL+
Sbjct: 6 FPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEG-----GPVRSSSGLSLVADAGLD 60
Query: 101 VLGDLTHQTL----ERQLADQQLGALLVATDLTESHRAGTVTVG------LLHAAG---G 147
L T+ + + L+A L + G +L AG G
Sbjct: 61 ALAAA--DTVIVPGGPDVDGRPPPPALLAA-LRRAAARGARVASVCTGAFVLAEAGLLDG 117
Query: 148 RRA-----LAGCLRRQ 158
RRA A L R+
Sbjct: 118 RRATTHWAYAEDLARR 133
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 29.0 bits (65), Expect = 5.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 404 EYLAAEVLELAGNAARDNKKTHSWWCLTA 432
EYLA EVL + +T WWCL A
Sbjct: 161 EYLAPEVLR-----KQPYDRTVDWWCLGA 184
>gnl|CDD|177669 PLN00035, PLN00035, histone H4; Provisional.
Length = 103
Score = 27.5 bits (61), Expect = 8.0
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 207 MSGRGKGG----KAKAKSKTRSSRAGLQ-FPVGRIHRLLRKG 243
MSGRGKGG K AK + R +Q I RL R+G
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG 42
Score = 27.1 bits (60), Expect = 9.8
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 349 MSGRGKGG----KTKTKSKTRSSRAGLQ-FPVGRIHRLLRKG 385
MSGRGKGG K K + R +Q I RL R+G
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG 42
>gnl|CDD|213917 TIGR04304, GeoRSP_SPASM, GeoRSP system SPASM domain protein.
Members of this protein family are encoded by one of two
consecutive genes for SPASM domain proteins. The two are
closely homologous in the SPASM domain regions, and also
in a small N-terminal region, but the other family
(TIGR04303) has an intact radical SAM domain (pfam04055)
that this "quasi-rSAM" protein lacks. A PqqD-family
protein, TIGR04302, is always adjacent.
Length = 293
Score = 28.7 bits (64), Expect = 8.4
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 488 TLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGTSFSESLSSLTTAGHDELV---LLLLLLR 544
+L+ TST T+ G L + L+ P+ S + + A + + LL+
Sbjct: 36 SLNVTSTAPTSPGWLLEVLERFR---GGPIAVSLTIPPQAHDDAVLALVAHGAVRELLVD 92
Query: 545 NEE 547
+
Sbjct: 93 VDH 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,189,986
Number of extensions: 2879739
Number of successful extensions: 2450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2439
Number of HSP's successfully gapped: 52
Length of query: 549
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 447
Effective length of database: 6,413,494
Effective search space: 2866831818
Effective search space used: 2866831818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)