RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7393
(549 letters)
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 182 bits (464), Expect = 1e-56
Identities = 94/103 (91%), Positives = 99/103 (96%)
Query: 219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 278
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 279 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
NKKTRIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNIQA L
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 103
Score = 111 bits (280), Expect = 3e-30
Identities = 58/64 (90%), Positives = 63/64 (98%)
Query: 361 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 420
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 421 NKKT 424
NKKT
Sbjct: 61 NKKT 64
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 178 bits (454), Expect = 4e-55
Identities = 66/101 (65%), Positives = 82/101 (81%)
Query: 221 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 280
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 281 KTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
K R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI L
Sbjct: 62 KGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPEL 102
Score = 111 bits (280), Expect = 4e-30
Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 363 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 422
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 423 KTHSWWCLTAETVQGAALTFERVDDVHGG 451
K +T + A E ++ + G
Sbjct: 62 KG----RVTPRHILLAVANDEELNQLLKG 86
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 156 bits (395), Expect = 1e-46
Identities = 65/103 (63%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Query: 220 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 278
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 279 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I L
Sbjct: 61 LKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSL 102
Score = 100 bits (251), Expect = 3e-26
Identities = 47/99 (47%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Query: 362 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 420
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 421 NKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVL 459
K +T +Q A E +D + GV+
Sbjct: 61 LKVK----RITPRHLQLAIRGDEELDSLIKATIAGGGVI 95
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 150 bits (381), Expect = 1e-43
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 209 GRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 268
+ A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 269 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303
L+LAGN R+ + I + +++A+ D+ L +
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171
Score = 104 bits (262), Expect = 7e-27
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 351 GRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 410
+ ++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 411 LELAGNAARDNKKTHSWWCLTAETVQGA 438
L+LAGN R+ + +T + ++ A
Sbjct: 137 LKLAGNYVRNIRHY----EITKQDIKVA 160
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 93.6 bits (233), Expect = 3e-24
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
+FP RI ++++ +V A PV ++ +E +L+ A + + HL
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 290 QLAI 293
+ I
Sbjct: 62 KQCI 65
Score = 74.8 bits (184), Expect = 1e-17
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 424
+FP RI ++++ +V A PV ++ +E +L+ A +
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAK 54
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 83.7 bits (207), Expect = 1e-20
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 232 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 291
P+ RI ++++ + + A APV A + E+ A DNK+ + + +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 292 AIRNDEELNKLLSGV 306
AI ++ + L+ V
Sbjct: 62 AITKFDQFDFLIDIV 76
Score = 58.7 bits (142), Expect = 9e-12
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 374 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE 433
P+ RI ++++ + + A APV A + E+ A DNK+ L
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRR----TLQRN 57
Query: 434 TVQGAALTFERVD 446
+ A F++ D
Sbjct: 58 DIAMAITKFDQFD 70
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 67.9 bits (166), Expect = 4e-14
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 220 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 279
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 280 KKTRIIPRHLQLAIRN 295
+ + ++ AI
Sbjct: 128 GRKTVQGEDVEKAITY 143
Score = 58.6 bits (142), Expect = 5e-11
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
+ P I R+ R+G R+ A + + +A V A + + K ++ HL
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 290 QLAIR 294
+
Sbjct: 61 KALAD 65
Score = 53.3 bits (128), Expect = 4e-09
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 362 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 421
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 422 KKTHSWWCLTAETVQGA 438
+ + E V+ A
Sbjct: 128 GRK----TVQGEDVEKA 140
Score = 50.2 bits (120), Expect = 5e-08
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 22/123 (17%)
Query: 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAAR-DNKKTHSWWCL 430
+ P I R+ R+G R+ A + + +A V A + KKT L
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKT-----L 55
Query: 431 TAETVQGAALTFERVDDVHGGDGL------------SLGVLGVGDGVAD---HVLEEHLE 475
E ++ A V+ V DG G+ D ++ E
Sbjct: 56 MEEHLKALADVL-MVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATE 114
Query: 476 NAT 478
Sbjct: 115 ELG 117
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 33.3 bits (76), Expect = 0.009
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 229 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 287
+ P+ + R+++ ++ A + + + + A K+ I
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 288 HLQLAIRNDEELN 300
+ A+ +
Sbjct: 61 DILFAMSTLGFDS 73
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 403
Score = 29.5 bits (66), Expect = 1.1
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 98 GLEVLGDLTHQTLERQLADQQLGALLVATD-----LTESHRAGTVTVGLLHAAGGRRALA 152
E D L Q G+ ++++ +G + +L G L+
Sbjct: 122 YTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKIHQHILPQGQGM--LS 179
Query: 153 GCLRRQLLPRGLASGRLASGLLRTGHVCKRNDSSITQSRSFSI 195
G R+ G+ S L +R+ S + S
Sbjct: 180 GIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISK 222
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 26.2 bits (58), Expect = 2.3
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 259 AVMEYLAAEVLELAGNAARDNKKTRIIP 286
++E A +V+ + A + + R++P
Sbjct: 24 HLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 26.2 bits (58), Expect = 4.0
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 197 GAVPIPQIYTMSGRGK-------GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERV 249
G + Q + +S G GK SK R R G+ G I L R + V
Sbjct: 7 GQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREV 66
Query: 250 GAG 252
G
Sbjct: 67 AQG 69
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 26.6 bits (58), Expect = 5.1
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 298
L A + A + I P HL A+ N E
Sbjct: 7 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEG 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,866,941
Number of extensions: 84742
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 23
Length of query: 549
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 459
Effective length of database: 1,171,896
Effective search space: 537900264
Effective search space used: 537900264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)