RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7395
(365 letters)
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 339 bits (871), Expect = e-117
Identities = 129/244 (52%), Positives = 166/244 (68%), Gaps = 8/244 (3%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
LV++RHGES+W K N F GW D LSE G+ EA AG++L++EG+ FD +TS L RA
Sbjct: 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRA 60
Query: 66 QDTVQIILQELGQS--PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVL 123
T+ I+L EL Q P V KSWRLNERHYG L G NK + A KYG EQV+IWRRSYDV
Sbjct: 61 IRTLWIVLDELDQMWLP-VEKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVP 119
Query: 124 PPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 183
PP + KD + Y +P + E++ P TESLK+TI RVLPYWNE IA ++K GK+
Sbjct: 120 PPALEKDDERYP--GHDPRYA--KLPEEELPLTESLKDTIARVLPYWNETIAPQLKSGKR 175
Query: 184 VLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVS 243
VL+ HG SLR LVK+++ +SD EI++LNIPT +P VY+LD NL P K +L D + ++
Sbjct: 176 VLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPIK-HYYLGDADEIA 234
Query: 244 KAME 247
A
Sbjct: 235 AAAA 238
Score = 123 bits (312), Expect = 2e-33
Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV+IWRRSYDV PP + KD + Y +P + E++ P TESLK+TI RVLPYWN
Sbjct: 108 QVKIWRRSYDVPPPALEKDDERYP--GHDPRYA--KLPEEELPLTESLKDTIARVLPYWN 163
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E IA ++K GK+VL+ HG SLR LVK++
Sbjct: 164 ETIAPQLKSGKRVLIAAHGNSLRALVKYL 192
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 327 bits (839), Expect = e-112
Identities = 131/244 (53%), Positives = 163/244 (66%), Gaps = 8/244 (3%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
LV++RHGESEW NLF GW D KLSE G +EA AG++L++EG++FD +TS L RA
Sbjct: 3 LVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIH 62
Query: 68 TVQIILQELGQS--PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
T+ I L EL Q P V KSWRLNERHYG L G NK + A KYG EQV IWRRS+DV PP
Sbjct: 63 TLNIALDELDQLWIP-VKKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPP 121
Query: 126 PMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 185
P+ + +P + + P TESLK+TI RVLPYWN+ IA ++ GK+VL
Sbjct: 122 PIDESDPRSPH--NDPRYA--HLDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVL 177
Query: 186 VVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSKA 245
+V HG SLR LVKH+E +SD EI++LNIPT IP VY+LD NL P K +L D E + A
Sbjct: 178 IVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKHY-YLGDPEAAAAA 236
Query: 246 MEKI 249
E +
Sbjct: 237 AEAV 240
Score = 117 bits (295), Expect = 5e-31
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV IWRRS+DV PPP+ + +P + + P TESLK+TI RVLPYWN
Sbjct: 108 QVNIWRRSFDVPPPPIDESDPRSPH--NDPRYA--HLDPKVLPLTESLKDTIARVLPYWN 163
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ IA ++ GK+VL+V HG SLR LVKH+
Sbjct: 164 DEIAPDLLSGKRVLIVAHGNSLRALVKHL 192
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 316 bits (811), Expect = e-108
Identities = 118/228 (51%), Positives = 151/228 (66%), Gaps = 5/228 (2%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
LV+LRHG+SEW K NLF GW D L+E GI EA AG++L++EG +FD +TS L RA
Sbjct: 3 KLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAI 62
Query: 67 DTVQIILQELGQSP-EVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
T+ I+L+E Q V KSWRLNERHYG L G NK + A KYG EQV IWRRSYD+ PP
Sbjct: 63 KTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPP 122
Query: 126 PMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 185
+ KD + + + + + P TESLK+T+ RVLPYW ++IA +K GK VL
Sbjct: 123 KLEKDDERSP----HRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVL 178
Query: 186 VVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPR 233
+V HG SLR L+K++E +SD +I+ LNIPT IP VY+LD NL
Sbjct: 179 IVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVISAY 226
Score = 110 bits (277), Expect = 2e-28
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV IWRRSYD+ PP + KD + + + + + P TESLK+T+ RVLPYW
Sbjct: 109 QVLIWRRSYDIPPPKLEKDDERSP----HRDRRYAHLDIGGLPLTESLKDTVERVLPYWE 164
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++IA +K GK VL+V HG SLR L+K++
Sbjct: 165 DDIAPNLKSGKNVLIVAHGNSLRALIKYL 193
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 292 bits (749), Expect = 7e-99
Identities = 121/233 (51%), Positives = 161/233 (69%), Gaps = 6/233 (2%)
Query: 18 WTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELG 77
W K N F GW D LSE G++EA AG++L+++GF+FD V+TS L RA T I+L+ELG
Sbjct: 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELG 60
Query: 78 QSP-EVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPPMTKDHKYYQD 136
Q V KSWRLNERHYG L G NK + A K+G EQV+IWRRSYD+ PPP+ K + Y
Sbjct: 61 QLHVPVIKSWRLNERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPG 120
Query: 137 IITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGL 196
+P +K +D P+TE LK+T+ RVLPYW ++IA +I GKKVLV HG SLR L
Sbjct: 121 --NDPVYK--DIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRAL 176
Query: 197 VKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSKAMEKI 249
VK+++++S+ +I++LNIPT +P VY+LD NL P K +L DEE + ME +
Sbjct: 177 VKYLDKMSEEDILELNIPTGVPLVYELDENLKPIKKY-YLLDEEELKAKMEAV 228
Score = 114 bits (287), Expect = 8e-30
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV+IWRRSYD+ PPP+ K + Y +P +K +D P+TE LK+T+ RVLPYW
Sbjct: 96 QVKIWRRSYDIPPPPLEKSDERYPG--NDPVYK--DIPKDALPNTECLKDTVERVLPYWE 151
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++IA +I GKKVLV HG SLR LVK++
Sbjct: 152 DHIAPDILAGKKVLVAAHGNSLRALVKYL 180
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 270 bits (693), Expect = 4e-90
Identities = 111/244 (45%), Positives = 143/244 (58%), Gaps = 9/244 (3%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
YTLV+LRHGESEW +NLF GW D L+E G EA G++L + G D V+TS L RA
Sbjct: 5 YTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRA 64
Query: 66 QDTVQIILQELGQS--PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVL 123
T + L + P V +SWRLNERHYG L G +K + +YG EQ +WRRSYD
Sbjct: 65 IRTANLALDAADRLWIP-VRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTP 123
Query: 124 PPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 183
PPP+ +Y QD +P + G P TE LK+ + R LPYW ++I ++K GK
Sbjct: 124 PPPIEDGSEYSQD--NDPRYADLGVG----PRTECLKDVVARFLPYWEDDIVPDLKAGKT 177
Query: 184 VLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVS 243
VL+ HG SLR LVKH++ +SD +I LNIPT IP VY+LD + P P D E +
Sbjct: 178 VLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDEDFKPLNPGGTYLDPEAAA 237
Query: 244 KAME 247
Sbjct: 238 AGAA 241
Score = 99.3 bits (248), Expect = 3e-24
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
Q +WRRSYD PPP+ +Y QD +P + G P TE LK+ + R LPYW
Sbjct: 112 QFMLWRRSYDTPPPPIEDGSEYSQD--NDPRYADLGVG----PRTECLKDVVARFLPYWE 165
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++I ++K GK VL+ HG SLR LVKH+
Sbjct: 166 DDIVPDLKAGKTVLIAAHGNSLRALVKHL 194
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 232 bits (594), Expect = 1e-75
Identities = 112/222 (50%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
LV +RHG SEW +NLF GW D L+E G++EA AG+ L++ G++FD FTS L+RA
Sbjct: 3 LVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIK 62
Query: 68 TVQIILQELGQ--SPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
T I+L+E Q P+V K+WRLNERHYG L G +K A +YG EQV IWRRSYD LPP
Sbjct: 63 TCNIVLEESNQLWIPQV-KNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPP 121
Query: 126 PMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 185
+ + + + D P E+LK T+ RVLP+W + IA + GK+VL
Sbjct: 122 DLDPQDPNS----AHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVL 177
Query: 186 VVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANL 227
V HG SLR L KHIE +SDA+IM L IPT P VYKLD NL
Sbjct: 178 VAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDNL 219
Score = 81.9 bits (202), Expect = 4e-18
Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV IWRRSYD LPP + + + + D P E+LK T+ RVLP+W
Sbjct: 108 QVHIWRRSYDTLPPDLDPQDPNS----AHNDRRYAHLPADVVPDAENLKVTLERVLPFWE 163
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ IA + GK+VLV HG SLR L KHI
Sbjct: 164 DQIAPALLSGKRVLVAAHGNSLRALAKHI 192
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 230 bits (588), Expect = 9e-75
Identities = 110/225 (48%), Positives = 139/225 (61%), Gaps = 5/225 (2%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
LV RHGESEW K NLF GW D LSE G ++A AG+++++ G +FD FTS L RA
Sbjct: 4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIK 63
Query: 68 TVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
T + L+ Q V KSWRLNERHYG LTG NK + A ++G EQV IWRRSYDVLPP
Sbjct: 64 TTNLALEASDQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPA 123
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
M KD +Y + + + ++ P E+LK T+ R LP+W + IA +K GK V V
Sbjct: 124 MAKDDEYS----AHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFV 179
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTK 231
HG S+R LVKHI+ LSD EIM + IP P V++ D L K
Sbjct: 180 GAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVK 224
Score = 92.4 bits (229), Expect = 8e-22
Identities = 51/123 (41%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 250 LKVHVGRPWGLQSHVF--LLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDI 302
L V V + W L + L G N F QV IWRRSYDVLPP M KD +Y
Sbjct: 75 LWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYS--- 131
Query: 303 ITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLV 362
+ + + ++ P E+LK T+ R LP+W + IA +K GK V V HG S+R LV
Sbjct: 132 -AHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALV 190
Query: 363 KHI 365
KHI
Sbjct: 191 KHI 193
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 225 bits (576), Expect = 4e-73
Identities = 102/223 (45%), Positives = 133/223 (59%), Gaps = 30/223 (13%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
TLV++RHG+SEW +NLF GW D L+E G+ EA AG+ L+ G +FD FTS LSRAQ
Sbjct: 4 TLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQ 63
Query: 67 DTVQIILQELGQSP-EVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
T Q+IL+ELGQ E + LNER YGDL+G NK K+G EQV IWRRSYDV PP
Sbjct: 64 HTCQLILEELGQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPP 123
Query: 126 PMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 185
ESLK+T RVLPY+ + I + +G++VL
Sbjct: 124 -----------------------------GGESLKDTGARVLPYYLQEILPRVLRGERVL 154
Query: 186 VVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLT 228
V HG SLR LV ++ L+ +I+KL + T +P VY+L+A+ T
Sbjct: 155 VAAHGNSLRALVMVLDGLTPEQILKLELATGVPIVYRLNADST 197
Score = 69.3 bits (170), Expect = 8e-14
Identities = 39/102 (38%), Positives = 48/102 (47%), Gaps = 34/102 (33%)
Query: 266 LLGINNNFARF-----QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPH 320
L G+N + AR QV IWRRSYDV PP
Sbjct: 94 LSGLNKDDARAKWGEEQVHIWRRSYDVPPP-----------------------------G 124
Query: 321 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLV 362
ESLK+T RVLPY+ + I + +G++VLV HG SLR LV
Sbjct: 125 GESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALV 166
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 219 bits (560), Expect = 2e-70
Identities = 104/222 (46%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
LV++RHG+SEW N F GW D LSE G++EA AG+++++ G +FD +TS L+RA
Sbjct: 4 LVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIK 63
Query: 68 TVQIILQELGQ--SPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
T+ L+E Q PE TK+WRLNERHYG L G NK + A KYG EQV IWRRSYDVLPP
Sbjct: 64 TLHYALEESDQLWIPE-TKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPP 122
Query: 126 PMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 185
+ D + + + P P E+LK T+ RV+P+W ++IA ++ GK V+
Sbjct: 123 LLDADDEGSA--AKDRRYANLDPR--IIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVI 178
Query: 186 VVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANL 227
+ HG SLR L K+IE +SD +IM L + T P VY D L
Sbjct: 179 IAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKL 220
Score = 76.1 bits (187), Expect = 6e-16
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV IWRRSYDVLPP + D + + + P P E+LK T+ RV+P+W
Sbjct: 109 QVHIWRRSYDVLPPLLDADDEGSA--AKDRRYANLDPR--IIPGGENLKVTLERVIPFWE 164
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++IA ++ GK V++ HG SLR L K+I
Sbjct: 165 DHIAPDLLDGKNVIIAAHGNSLRALTKYI 193
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 216 bits (551), Expect = 4e-69
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 9/224 (4%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L++ RHG+SEW +NLF GW D LSE GI EA AG+ +R+ D FTS L+RA
Sbjct: 3 KLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRAL 62
Query: 67 DTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
DT IL E Q V KSWRLNERHYG L G NK ++G EQV IWRRSYDV PP
Sbjct: 63 DTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPP 122
Query: 126 PMTKDHK--YYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 183
T++ + Y D + + ++ P++ESLK+T++RV+P+W ++I+ + G+
Sbjct: 123 AETEEQREAYLAD------RRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQT 176
Query: 184 VLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANL 227
VLV HG S+R L+K++E +SD +I+ I T P VY+L +L
Sbjct: 177 VLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDL 220
Score = 86.5 bits (214), Expect = 1e-19
Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 13/107 (12%)
Query: 266 LLGINNNFARF-----QVQIWRRSYDVLPPPMTKDHK--YYQDIITNPNFKIDGPNEDQF 318
L G+N + AR QV IWRRSYDV PP T++ + Y D + + ++
Sbjct: 93 LQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLAD------RRYNHLDKRMM 146
Query: 319 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
P++ESLK+T++RV+P+W ++I+ + G+ VLV HG S+R L+K++
Sbjct: 147 PYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYL 193
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 182 bits (463), Expect = 6e-56
Identities = 85/244 (34%), Positives = 118/244 (48%), Gaps = 58/244 (23%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
L++LRHG+S W +NLF GW D LS+ GI EA AG+ ++D D +FTS L R+
Sbjct: 4 LILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIKD--LPIDCIFTSTLVRSLM 61
Query: 68 T------------VQIILQELGQSPEVTK---------------SWRLNERHYGDLTGYN 100
T + I+ E +++ S LNER YG+L G N
Sbjct: 62 TALLAMTNHSSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKN 121
Query: 101 KLQMANKYGLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLK 160
K + A K+G EQV++WRRSY P P ESL+
Sbjct: 122 KAETAEKFGEEQVKLWRRSYKTAP-----------------------------PQGESLE 152
Query: 161 ETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFV 220
+T R LPY+ I ++QGK V V HG SLR L+ +E+LS+ E++ L +PT P V
Sbjct: 153 DTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIV 212
Query: 221 YKLD 224
Y+
Sbjct: 213 YEWT 216
Score = 63.2 bits (154), Expect = 2e-11
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 29/90 (32%)
Query: 273 FARFQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVL 332
F QV++WRRSY PP ESL++T R L
Sbjct: 129 FGEEQVKLWRRSYKTAPP-----------------------------QGESLEDTGQRTL 159
Query: 333 PYWNENIATEIKQGKKVLVVTHGTSLRGLV 362
PY+ I ++QGK V V HG SLR L+
Sbjct: 160 PYFQNRILPHLQQGKNVFVSAHGNSLRSLI 189
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 161 bits (410), Expect = 6e-49
Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEG-FQFDHVFTSQLSRA 65
L ++RHGE+EW + G D L+E G +A G++L +FD V++S L RA
Sbjct: 1 RLYLIRHGETEWNREGRLYGDTDVPLTELGRAQAEALGRLLASLLLPRFDVVYSSPLKRA 60
Query: 66 QDTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPP 125
+ T + + LG L ER +G G ++A KY E + WR YD PP
Sbjct: 61 RQTAEALAIALGL-------PGLRERDFGAWEGLTWDEIAAKYPEEYLAAWRDPYDPAPP 113
Query: 126 PMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 185
P ESL + + RV P +E IAT G+ VL
Sbjct: 114 A--------------------------PPGGESLADLVERVEPALDELIATADASGQNVL 147
Query: 186 VVTHGTSLRGL 196
+V+HG +R L
Sbjct: 148 IVSHGGVIRAL 158
Score = 54.0 bits (130), Expect = 6e-09
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 292 MTKDH--KYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 349
+T D Y + P P ESL + + RV P +E IAT G+ V
Sbjct: 87 LTWDEIAAKYPEEYLAAWRDPYDPAPPAPPGGESLADLVERVEPALDELIATADASGQNV 146
Query: 350 LVVTHGTSLRGL 361
L+V+HG +R L
Sbjct: 147 LIVSHGGVIRAL 158
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 126 bits (318), Expect = 2e-35
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 36/190 (18%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L ++RHGE+EW G DS L+E G ++A G+ R +G FD +++S L RA
Sbjct: 1 RLYLVRHGETEWNVER-LQGDTDSPLTELGREQARALGK--RLKGIPFDRIYSSPLLRAI 57
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
T +I+ + LG + RL ER +GD G ++ ++ E D PP
Sbjct: 58 QTAEILAEALG--LPIIVDPRLRERDFGDWEGLTFDEIKAEFPEELRAWLEDPADFRPPG 115
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
ESL + RV E +A G VL+
Sbjct: 116 G-----------------------------ESLADVYERVEAALEELLAK--HPGGNVLI 144
Query: 187 VTHGTSLRGL 196
V+HG +R L
Sbjct: 145 VSHGGVIRAL 154
Score = 43.6 bits (103), Expect = 3e-05
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 310 IDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGL 361
++ P + + P ESL + RV E +A G VL+V+HG +R L
Sbjct: 105 LEDPADFRPPGGESLADVYERVEAALEELLAK--HPGGNVLIVSHGGVIRAL 154
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 124 bits (313), Expect = 4e-34
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 33/210 (15%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L ++RHGE+EW GW DS L+E G +A + L FD +++S L RAQ
Sbjct: 4 RLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQ 63
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
T + + +ELG EV RL E +GD G ++A + E++ W
Sbjct: 64 QTAEPLAEELGLPLEVDD--RLREIDFGDWEGLTIDELAEEP-PEELAAWLA-------- 112
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
P P ESL + RV+ E + G VLV
Sbjct: 113 --------------------DPYLAPPPGGESLADVSKRVVAALAE-LLRS-PPGNNVLV 150
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKLNIPTA 216
V+HG +R L+ ++ L E+ +L + A
Sbjct: 151 VSHGGVIRALLAYLLGLDLEELWRLRLDNA 180
Score = 40.2 bits (94), Expect = 7e-04
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 295 DHKYYQDIITNPN----FKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 350
+ ++ P + P P ESL + RV+ E + G VL
Sbjct: 92 EGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAE-LLRS-PPGNNVL 149
Query: 351 VVTHGTSLRGLVKHI 365
VV+HG +R L+ ++
Sbjct: 150 VVSHGGVIRALLAYL 164
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA,
and related proteins. Functions include roles in
metabolism, signaling, or regulation, for example,
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system. Deficiency and mutation
in many of the human members result in disease, for
example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG.
Length = 153
Score = 115 bits (289), Expect = 4e-31
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L ++RHGESEW F GW D L+E G ++A G+ L++ G +FD +++S L RA
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60
Query: 67 DTVQIILQELGQSPEVTKSWRLNE 90
T +IIL+EL V RL E
Sbjct: 61 QTAEIILEELPG-LPVEVDPRLRE 83
Score = 70.4 bits (173), Expect = 1e-14
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 156 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPT 215
L+E RVLP E IA GK VL+V+HG LR L+ ++ LSD +I++LN+P
Sbjct: 78 DPRLREA--RVLPALEELIAPH--DGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLPN 133
Query: 216 AIPFVYKLDANLTPTK 231
V +LD N
Sbjct: 134 GSISVLELDENGGGVL 149
Score = 45.0 bits (107), Expect = 7e-06
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 321 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
L+E RVLP E IA GK VL+V+HG LR L+ ++
Sbjct: 78 DPRLREA--RVLPALEELIAPH--DGKNVLIVSHGGVLRALLAYL 118
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains
a His residue which is phosphorylated during the
reaction. Catalytic domain of a functionally diverse
set of proteins, most of which are phosphatases. The
conserved catalytic core of this domain contains a His
residue which is phosphorylated in the reaction. This
set of proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM,
and BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in
disease, for example erythrocyte BPGM deficiency is a
disease associated with a decrease in the concentration
of 2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 104 bits (261), Expect = 4e-27
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L ++RHGE E F GW D L+E G ++A G+ LR+ +FD +++S L RA
Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60
Query: 67 DTVQIILQELGQSPEVTKSWR 87
T +IIL+ L + V R
Sbjct: 61 QTAEIILEGLFEGLPVEVDPR 81
Score = 66.3 bits (162), Expect = 3e-13
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 165 RVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLD 224
RVL E +A + GK VL+V+HG ++R L+ + LSD EI+ LN+P V +LD
Sbjct: 83 RVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLPNGSILVLELD 142
Query: 225 ANLTP 229
Sbjct: 143 ECGGK 147
Score = 46.3 bits (110), Expect = 3e-06
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 330 RVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
RVL E +A + GK VL+V+HG ++R L+ +
Sbjct: 83 RVLNALLELLARHLLDGKNVLIVSHGGTIRALLAAL 118
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 86.5 bits (215), Expect = 3e-20
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 37/209 (17%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
L ++RHGE++ + G D L+E+G ++A + L D FD V++S LSR ++
Sbjct: 1 LYLIRHGETDVNAGLCY-GQTDVPLAESGEEQAAALREKLAD--VPFDAVYSSPLSRCRE 57
Query: 68 TVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPPM 127
+I+ + + + K RL E +GD G RS+D +P
Sbjct: 58 LAEILAE--RRGLPIIKDDRLREMDFGDWEG-------------------RSWDEIPEAY 96
Query: 128 TKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVV 187
+ + D + + P ES + RV + E + +G VL+V
Sbjct: 97 PELDAWAADW---QHAR--------PPGGESFADFYQRVSEFLEE-LLKA-HEGDNVLIV 143
Query: 188 THGTSLRGLVKHIEQLSDAEIMKLNIPTA 216
THG +R L+ H+ L + +
Sbjct: 144 THGGVIRALLAHLLGLPLEQWWSFAVEYG 172
Score = 35.3 bits (82), Expect = 0.023
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 318 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
P ES + RV + E + +G VL+VTHG +R L+ H+
Sbjct: 111 PPGGESFADFYQRVSEFLEE-LLKA-HEGDNVLIVTHGGVIRALLAHL 156
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 65.5 bits (160), Expect = 2e-12
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 10 MLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQDTV 69
++RHGE++W G DS L+ G ++A + ++ G H+ +S L R + T
Sbjct: 6 LVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGIT--HIISSDLGRTRRTA 63
Query: 70 QIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPPMTK 129
+II Q G ++ RL E + G L + + + E+ WRR
Sbjct: 64 EIIAQACG--CDIIFDPRLRELNMGVL----EKRHIDSLTEEEEG-WRRQL--------- 107
Query: 130 DHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTH 189
++G + + P ES++E R+ + E+ QG + L+V+H
Sbjct: 108 ---------------VNGTVDGRIPEGESMQELSDRMHAALESCL--ELPQGSRPLLVSH 150
Query: 190 GTSLRGLVKHI 200
G +L LV I
Sbjct: 151 GIALGCLVSTI 161
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 63.1 bits (154), Expect = 1e-11
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
L ++RHGE++ L+ G + L+ GI++A +LR FD V S+L RAQ
Sbjct: 3 LWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR--DVPFDLVLCSELERAQH 60
Query: 68 TVQIILQELGQSPEVTKSWRLNERHYGD 95
T +++L + + LNE +GD
Sbjct: 61 TARLVLSDRQLPVHIIP--ELNEMFFGD 86
>gnl|CDD|224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 61.5 bits (150), Expect = 2e-11
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDS--KLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
L ++RHG++EW G D L+E G KEA + L +G + D V S RA
Sbjct: 4 LYLMRHGKAEWAAP----GIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRA 59
Query: 66 QDTVQIILQELGQSPEVTKSWRL 88
+ T +I+ + LG+ L
Sbjct: 60 RQTAEIVAEHLGEKKVEVFEELL 82
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 64.2 bits (157), Expect = 2e-11
Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 35/193 (18%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L++LRHG++E + + + G + +L+E G ++A A + L G D V +S L RA+
Sbjct: 173 RLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAARG-GIDAVVSSPLQRAR 231
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
DT + LG +VT L E +G G + A + W V PP
Sbjct: 232 DTAAAAAKALG--LDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRA-WLADTSVAPP- 287
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
G ES RV + IA G VLV
Sbjct: 288 -------------------GG---------ESFDAVARRVRRARDRLIAEY--PGATVLV 317
Query: 187 VTHGTSLRGLVKH 199
V+H T ++ L++
Sbjct: 318 VSHVTPIKTLLRL 330
Score = 31.9 bits (73), Expect = 0.48
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 319 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKH 364
P ES RV + IA G VLVV+H T ++ L++
Sbjct: 287 PGGESFDAVARRVRRARDRLIAEY--PGATVLVVSHVTPIKTLLRL 330
>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
A three-gene system broadly conserved among the
Actinobacteria includes MSMEG_4193 and homologs, a
subgroup among the larger phosphoglycerate mutase family
protein (pfam00300). Another member of the trio is a
probable kinase, related to phosphatidylinositol
kinases; that context supports the hypothesis that this
protein acts as a phosphomutase.
Length = 204
Score = 56.2 bits (136), Expect = 2e-09
Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 41/196 (20%)
Query: 7 TLVMLRHGES-EWTKRNLFCGWYDS-KLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSR 64
T++++RHG S T L G L E G ++A + L D + +S L R
Sbjct: 1 TVILVRHGRSTANTAGTL-AGRTPGVDLDERGREQAAALAERLAD--LPIAAIVSSPLER 57
Query: 65 AQDTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
++T + I + G P V + RL E YGD TG ++A + +W
Sbjct: 58 CRETAEPIAEARGLPPRVDE--RLGECDYGDWTGRELKELAKE------PLW-------- 101
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRV---LPYWNENIATEIKQG 181
P+ + H P+ FP ESL + R + + +A E
Sbjct: 102 -PVVQAH----------------PSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPD 144
Query: 182 KKVLVVTHGTSLRGLV 197
+ +HG ++ ++
Sbjct: 145 AVWVACSHGDVIKSVL 160
>gnl|CDD|139587 PRK13462, PRK13462, acid phosphatase; Provisional.
Length = 203
Score = 46.0 bits (109), Expect = 8e-06
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
L++LRHGE+EW+K G + +L+E G +A +AGQ L + V +S RA D
Sbjct: 8 LLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALD 67
Query: 68 TVQIILQELGQSPEVTKSWRLNERHYGDLTG 98
T +L S L E YG G
Sbjct: 68 TA-----KLAGLTVDEVSGLLAEWDYGSYEG 93
>gnl|CDD|129351 TIGR00249, sixA, phosphohistidine phosphatase SixA. [Regulatory
functions, Protein interactions].
Length = 152
Score = 44.4 bits (105), Expect = 1e-05
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDS--KLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
L ++RHG++ + DS L+ NG E+ + Q L+ +G + + + S RA
Sbjct: 3 LFIMRHGDAALDAAS------DSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRA 56
Query: 66 QDTVQIILQELGQSPE 81
+ T +I+ L
Sbjct: 57 EQTAEIVGDCLNLPSS 72
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 37.7 bits (87), Expect = 0.005
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
T+ + RHGE+EW G +S L+ENGI +A G+ ++D +++S R
Sbjct: 4 TVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKD--LSIHAIYSSPSERTL 61
Query: 67 DTVQIILQE 75
T ++I E
Sbjct: 62 HTAELIKGE 70
>gnl|CDD|235734 PRK06193, PRK06193, hypothetical protein; Provisional.
Length = 206
Score = 32.4 bits (74), Expect = 0.25
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 31 KLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQDTVQII 72
LSE G ++A G+ R V +S RA +T Q+
Sbjct: 73 NLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLA 114
>gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer
domain, having a ribosomal S5 domain 2-like fold, found
in proteins similar to human PSM1 (hPSM1) and yeast
MLH2. hPSM1 and yMLH2 are members of the DNA mismatch
repair (MutL/MLH1/PMS2) family. This transducer domain
is homologous to the second domain of the DNA gyrase B
subunit, which is known to be important in nucleotide
hydrolysis and the transduction of structural signals
from ATP-binding site to the DNA breakage/reunion
regions of the enzymes. PMS1 forms a heterodimer with
MLH1. The MLH1-PMS1 complex functions in meiosis. Loss
of yMLH2 results in a small but significant decrease in
spore viability and a significant increase in gene
conversion frequencies. A role for hMLH1-hPMS1 in DNA
mismatch repair has not been established. Mutation in
hMLH1 accounts for a large fraction of Lynch syndrome
(HNPCC) families, however there is no convincing
evidence to support hPMS1 having a role in HNPCC
predisposition.
Length = 132
Score = 30.7 bits (70), Expect = 0.42
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 183 KVLVVTHGTSLRGLVKHIEQLSDAEIMKLNI--PTAIPFVYKLDANLTPTKPRQFLCDEE 240
K+L + ++ R L + LNI P + +D N+ P K L ++E
Sbjct: 68 KLLRQYYSSAYRKS-----SLRRYPVFFLNILCPPGL-----VDVNIEPDKDDVLLQNKE 117
Query: 241 TVSKAMEKILKVHVG 255
V +A+E +L+ G
Sbjct: 118 AVLQAVENLLESLYG 132
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 30.8 bits (70), Expect = 0.99
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 159 LKETIMRVLPYWN---ENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPT 215
++ TI++ E I IK K++VV+H +++ G + IE EI +L
Sbjct: 112 VEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIE-----EIGELAQEN 166
Query: 216 AIPFVYKLDANLT 228
I F+ LDA T
Sbjct: 167 GIFFI--LDAAQT 177
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 153 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVV----THGTSLRGLVKHIEQ 202
F E PY E +GK+VL+V G +L ++ +++
Sbjct: 43 FIRKERKGPGRTPSEPYGLELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKE 96
>gnl|CDD|182641 PRK10677, modA, molybdate transporter periplasmic protein;
Provisional.
Length = 257
Score = 29.3 bits (66), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 172 ENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEI 208
++IA + K+ K V VV+ S L + IEQ + A++
Sbjct: 42 QDIAAQYKKEKGVDVVSSFASSSTLARQIEQGAPADL 78
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 29.7 bits (67), Expect = 2.6
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 180 QGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKP--RQF 235
+G V++VTH + + + ++ D EI++ V + T RQF
Sbjct: 193 RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGWRQF 250
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 28.1 bits (63), Expect = 3.8
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 168 PYWNENIATEIKQGKKVLVV----THGTSLRGLVKHIEQ 202
+ E+ +GK+VL+V G +LR V+ +++
Sbjct: 73 SVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKK 111
>gnl|CDD|222271 pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found
at the N-terminus of the chaperone SurA. It is a helical
domain of unknown function. The C-terminus of the SurA
protein folds back and forms part of this domain also
but is not included in the current alignment.
Length = 154
Score = 28.1 bits (63), Expect = 4.8
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 27 WYDSKLSEN-GIKEAHVAGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPE 81
+ +A VA +I + FQ VF++ D + +L+E G +P
Sbjct: 89 LIQEAKRLGLEVSDAEVADEIEQIPEFQVGGVFSA------DRYEEVLRENGYTPA 138
>gnl|CDD|190632 pfam03431, RNA_replicase_B, RNA replicase, beta-chain. This family
is of Leviviridae RNA replicases. The replicase is also
known as RNA dependent RNA polymerase.
Length = 540
Score = 28.7 bits (64), Expect = 5.9
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 45 QILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPEVTKSWRLNERHYGDLTG----YN 100
Q L G ++ T LS A D++ + L EL PE YG L G Y
Sbjct: 233 QRLAYLGSVDGNLATIDLSSASDSISLRLVELLLPPEWYSYLLDLRSPYGILDGKVHTYE 292
Query: 101 KLQ-MANKYGLE 111
K+ M N + E
Sbjct: 293 KISSMGNGFTFE 304
>gnl|CDD|223746 COG0674, PorA, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[Energy production and conversion].
Length = 365
Score = 28.4 bits (64), Expect = 6.4
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 138 ITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGK-------KVLVVTHG 190
P+ + G D + + + I R L NE E + ++++V G
Sbjct: 207 EAVPDAYVTGFEHDNAGY-PAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMG 265
Query: 191 TSLRGLVKHIEQLSDAEIMK---LNIPTAIPFVYK 222
+S + + L + K L + T PF +
Sbjct: 266 SSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAE 300
>gnl|CDD|240279 PTZ00122, PTZ00122, phosphoglycerate mutase; Provisional.
Length = 299
Score = 27.8 bits (62), Expect = 8.7
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 31 KLSENGIKEAHVAGQILRD---EGFQFDHV---FTSQLSRAQDTVQIILQELGQSPEVTK 84
+L+E G ++A + G+ L++ E V + S ++RA++T +II + +
Sbjct: 125 RLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPGVRLIED 184
Query: 85 SWRLNER 91
L E
Sbjct: 185 P-NLAEG 190
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 27.9 bits (62), Expect = 9.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 217 IPFVYKLDANLTPTKPRQFLCDEETVSKAMEKILKVHVGR 256
IP+ YK+DAN TP F EE + E + V
Sbjct: 21 IPYKYKMDANETP-----FELPEEVIKNIQEIVKSSQVNI 55
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,709,813
Number of extensions: 1801576
Number of successful extensions: 2048
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1992
Number of HSP's successfully gapped: 69
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)