RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7395
(365 letters)
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 401 bits (1032), Expect = e-141
Identities = 120/245 (48%), Positives = 165/245 (67%), Gaps = 1/245 (0%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
Y L+MLRHGE W K N FC W D KL+ G++EA G+ L+ F+FD VFTS L+R+
Sbjct: 4 YKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRS 63
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T +IL+ELGQ V SWRLNERHYG L G N+ QMA +G EQV++WRRSY+V P
Sbjct: 64 IHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTP 123
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
PP+ + H YYQ+I + +K+ DQ P +ESLK+ + R+LPYWNE IA E+ +GK +
Sbjct: 124 PPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTI 183
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
L+ HG S R L+KH+E +SD +I+ + +PT +P + +LD NL P QFL D+E +
Sbjct: 184 LISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPHQFLGDQEAIQA 243
Query: 245 AMEKI 249
A++K+
Sbjct: 244 AIKKV 248
Score = 146 bits (372), Expect = 5e-42
Identities = 44/89 (49%), Positives = 63/89 (70%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV++WRRSY+V PPP+ + H YYQ+I + +K+ DQ P +ESLK+ + R+LPYWN
Sbjct: 111 QVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWN 170
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E IA E+ +GK +L+ HG S R L+KH+
Sbjct: 171 ERIAPEVLRGKTILISAHGNSSRALLKHL 199
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 395 bits (1018), Expect = e-139
Identities = 136/245 (55%), Positives = 167/245 (68%), Gaps = 3/245 (1%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
Y LV++RHGES W N F GWYD+ LS G +EA GQ LRD G++FD FTS RA
Sbjct: 4 YKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRA 63
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T+ +L + Q V ++WRLNERHYG LTG NK + A K+G QV+IWRRSYDV P
Sbjct: 64 IRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPP 123
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
PPM DH +Y +I + + EDQ P ESLK+TI R LP+WNE I +IK+GK+V
Sbjct: 124 PPMEPDHPFYSNISKDRRYA--DLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRV 181
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
L+ HG SLRG+VKH+E LS+ IM+LN+PT IP VY+LD NL P KP QFL DEETV K
Sbjct: 182 LIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVRK 241
Query: 245 AMEKI 249
AME +
Sbjct: 242 AMEAV 246
Score = 141 bits (357), Expect = 7e-40
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV+IWRRSYDV PPPM DH +Y +I + + EDQ P ESLK+TI R LP+WN
Sbjct: 111 QVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYA--DLTEDQLPSCESLKDTIARALPFWN 168
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E I +IK+GK+VL+ HG SLRG+VKH+
Sbjct: 169 EEIVPQIKEGKRVLIAAHGNSLRGIVKHL 197
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 385 bits (992), Expect = e-135
Identities = 99/245 (40%), Positives = 139/245 (56%), Gaps = 7/245 (2%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
+LV+LRHGES+W NLF GW D L++ G EA +G+++ + D ++TS L RA
Sbjct: 5 GSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRA 64
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T + L + V +SWRLNERHYG L G +K + +YG EQ WRRSYD P
Sbjct: 65 ITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPP 124
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
PP+ + ++ QD P + + P TE L + + R LPY+ + I +++ GK V
Sbjct: 125 PPIERGSQFSQDAD--PRYA----DIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTV 178
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
L+V HG SLR LVKH++Q+SD EI+ LNIPT IP Y LD+ + P D E +
Sbjct: 179 LIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAA 238
Query: 245 AMEKI 249
+
Sbjct: 239 GAAAV 243
Score = 132 bits (335), Expect = 1e-36
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
Q WRRSYD PPP+ + ++ QD P + + P TE L + + R LPY+
Sbjct: 112 QFMAWRRSYDTPPPPIERGSQFSQDAD--PRYA----DIGGGPLTECLADVVARFLPYFT 165
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ I +++ GK VL+V HG SLR LVKH+
Sbjct: 166 DVIVGDLRVGKTVLIVAHGNSLRALVKHL 194
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 384 bits (989), Expect = e-135
Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 6/245 (2%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
LV++RHGES+W K N F GWYD LSE G+ EA AG++L++EG+ FD +TS L RA
Sbjct: 3 TKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRA 62
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T+ +L EL Q+ V KSW+LNERHYG L G NK + A KYG EQV+ WRR + V P
Sbjct: 63 IHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTP 122
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
P +TKD + Y +P + +E + P TESL TI RV+PYWNE I +K G++V
Sbjct: 123 PELTKDDERYP--GHDPRYA--KLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERV 178
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
++ HG SLR LVK+++ +S+ EI++LNIPT +P VY+ D N P K R +L + + ++
Sbjct: 179 IIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLK-RYYLGNADEIAA 237
Query: 245 AMEKI 249
+
Sbjct: 238 KAAAV 242
Score = 134 bits (341), Expect = 9e-38
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV+ WRR + V PP +TKD + Y +P + +E + P TESL TI RV+PYWN
Sbjct: 110 QVKQWRRGFAVTPPELTKDDERYP--GHDPRYA--KLSEKELPLTESLALTIDRVIPYWN 165
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E I +K G++V++ HG SLR LVK++
Sbjct: 166 ETILPRMKSGERVIIAAHGNSLRALVKYL 194
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 384 bits (988), Expect = e-135
Identities = 113/246 (45%), Positives = 150/246 (60%), Gaps = 8/246 (3%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
Y L ++RHGESEW K N F GW D LSE G+ EA AG++L ++GF+FD V+TS L RA
Sbjct: 21 YKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRA 80
Query: 66 QDTVQIILQELGQS--PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVL 123
T +L+ELG P + WRLNERHYG L G NK + A+K+G +QV+IWRRS+DV
Sbjct: 81 IMTTWTVLKELGNINCP-IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVP 139
Query: 124 PPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 183
PP + K + +K G P TE LK+T+ RV PY+ + IA I GK
Sbjct: 140 PPVLEKSDPRWP--GNELIYK--GICPSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKS 195
Query: 184 VLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVS 243
VLV HG SLR L+ +E ++ +I+++NIPTA P V +LD L TK +L EE +
Sbjct: 196 VLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKY-YLISEEELK 254
Query: 244 KAMEKI 249
ME +
Sbjct: 255 AKMEAV 260
Score = 134 bits (340), Expect = 2e-37
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV+IWRRS+DV PP + K + +K G P TE LK+T+ RV PY+
Sbjct: 128 QVKIWRRSFDVPPPVLEKSDPRWP--GNELIYK--GICPSCLPTTECLKDTVERVKPYFE 183
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ IA I GK VLV HG SLR L+ +
Sbjct: 184 DVIAPSIMSGKSVLVSAHGNSLRALLYLL 212
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 383 bits (986), Expect = e-134
Identities = 113/245 (46%), Positives = 156/245 (63%), Gaps = 6/245 (2%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
Y LV++RHGES W K N F GW D L+E G +EA AGQ+L++ G+ FD +TS L RA
Sbjct: 10 YKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRA 69
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T+ + ++ V SWRLNERHYG L+G NK + A KYG EQV +WRRSYD P
Sbjct: 70 IRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPP 129
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
P + + +P + +Q P TE LK+T+ RVLP WNE+IA +K GK+V
Sbjct: 130 PALEPGDERA--PYADPRYA--KVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQV 185
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
L+ HG SLR L+K+++ +SDA+I+ LNIP +P VY+LD +LTP + +L D+E ++K
Sbjct: 186 LIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIRHY-YLGDQEAIAK 244
Query: 245 AMEKI 249
A +
Sbjct: 245 AQAAV 249
Score = 134 bits (339), Expect = 2e-37
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV +WRRSYD PP + + +P + +Q P TE LK+T+ RVLP WN
Sbjct: 117 QVLVWRRSYDTPPPALEPGDERA--PYADPRYA--KVPREQLPLTECLKDTVARVLPLWN 172
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E+IA +K GK+VL+ HG SLR L+K++
Sbjct: 173 ESIAPAVKAGKQVLIAAHGNSLRALIKYL 201
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 383 bits (986), Expect = e-134
Identities = 129/250 (51%), Positives = 168/250 (67%), Gaps = 6/250 (2%)
Query: 1 MSEDCYTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTS 60
+ + Y LV++RHGESEW K NLF GW D KLS+ GI EA AG +L+ EG+ FD F+S
Sbjct: 23 LGDFMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSS 82
Query: 61 QLSRAQDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRS 119
LSRA DT+ IIL+ELGQS V K+WRLNERHYG L G NK + A KYG ++V IWRRS
Sbjct: 83 LLSRANDTLNIILRELGQSYISVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRS 142
Query: 120 YDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIK 179
YDV P + + + P +K + + P TE LK+T+ RV+PYW + IA E+
Sbjct: 143 YDVPPMSLDESDDRHPIKD--PRYK--HIPKRELPSTECLKDTVARVIPYWTDEIAKEVL 198
Query: 180 QGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDE 239
+GKKV+V HG SLR LVK+ + LS+ +++KLNIPT IP VY+LD +L P K +L DE
Sbjct: 199 EGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKHY-YLGDE 257
Query: 240 ETVSKAMEKI 249
+ KAME +
Sbjct: 258 SKIKKAMESV 267
Score = 133 bits (338), Expect = 4e-37
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
+V IWRRSYDV P + + + P +K + + P TE LK+T+ RV+PYW
Sbjct: 135 KVLIWRRSYDVPPMSLDESDDRHPIKD--PRYK--HIPKRELPSTECLKDTVARVIPYWT 190
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ IA E+ +GKKV+V HG SLR LVK+
Sbjct: 191 DEIAKEVLEGKKVIVAAHGNSLRALVKYF 219
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 382 bits (983), Expect = e-134
Identities = 121/245 (49%), Positives = 161/245 (65%), Gaps = 6/245 (2%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
YTLV+LRHGES W K N F GW D LSE G +EA AG+ L+++ F+FD V+TS L RA
Sbjct: 12 YTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRA 71
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T +L+ V K+WRLNERH G L G NK + A KYG EQV+IWRRSYD+ P
Sbjct: 72 ICTAWNVLKTADLLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPP 131
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
P + K+ + N +K +D P TE LK+T+ RVLP+W ++IA +I KKV
Sbjct: 132 PKLDKEDNRWP--GHNVVYK--NVPKDALPFTECLKDTVERVLPFWFDHIAPDILANKKV 187
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
+V HG SLRGLVKH++ LS+A++++LNIPT +P VY+LD NL P K +L D E + K
Sbjct: 188 MVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDENLKPIKH-YYLLDSEELKK 246
Query: 245 AMEKI 249
M+++
Sbjct: 247 KMDEV 251
Score = 134 bits (341), Expect = 1e-37
Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QV+IWRRSYD+ PP + K+ + N +K +D P TE LK+T+ RVLP+W
Sbjct: 119 QVKIWRRSYDIPPPKLDKEDNRWP--GHNVVYK--NVPKDALPFTECLKDTVERVLPFWF 174
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++IA +I KKV+V HG SLRGLVKH+
Sbjct: 175 DHIAPDILANKKVMVAAHGNSLRGLVKHL 203
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 381 bits (980), Expect = e-134
Identities = 111/243 (45%), Positives = 155/243 (63%), Gaps = 6/243 (2%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
LV++RHG+SEW ++NLF GW D KLS G +EA AG++L+++ D ++TS+LSRA
Sbjct: 3 LVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQ 62
Query: 68 TVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
T I L++ + V +SWRLNERHYGDL G +K + K+G E+ +RRS+DV PPP
Sbjct: 63 TANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPP 122
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
+ + Q +K + + P TESL I R+LPYW + IA ++ GK V++
Sbjct: 123 IDASSPFSQKGD--ERYK--YVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMI 178
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSKAM 246
HG SLRGLVKH+E +SDA+I KLNIPT IP V++LD NL P+KP +L D E +
Sbjct: 179 AAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYL-DPEAAAAGA 237
Query: 247 EKI 249
+
Sbjct: 238 AAV 240
Score = 134 bits (340), Expect = 1e-37
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
+ +RRS+DV PPP+ + Q +K + + P TESL I R+LPYW
Sbjct: 108 KFNTYRRSFDVPPPPIDASSPFSQKGD--ERYK--YVDPNVLPETESLALVIDRLLPYWQ 163
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ IA ++ GK V++ HG SLRGLVKH+
Sbjct: 164 DVIAKDLLSGKTVMIAAHGNSLRGLVKHL 192
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 374 bits (964), Expect = e-131
Identities = 100/244 (40%), Positives = 141/244 (57%), Gaps = 7/244 (2%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
TL++LRHGES+W RNLF GW D L++ G EA +G++L + D ++TS L RA
Sbjct: 28 ATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRA 87
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
T + L V +SWRLNERHYG L G +K +YG E+ WRRSYD P
Sbjct: 88 ITTAHLALDTADWLWIPVRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPP 147
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 184
PP+ K ++ QD P + + P TE L + + R LPY+ + I +++ G+ V
Sbjct: 148 PPIEKGSEFSQDAD--PRYT----DIGGGPLTECLADVVTRFLPYFTDVIVPDLRTGRTV 201
Query: 185 LVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSK 244
L+V HG SLR LVKH++++SD E++ LN+PT IP Y LDA+L P P D E +
Sbjct: 202 LIVAHGNSLRALVKHLDEMSDDEVVGLNVPTGIPLRYDLDADLRPVVPGGTYLDPEAAAA 261
Query: 245 AMEK 248
+ +
Sbjct: 262 VISQ 265
Score = 131 bits (332), Expect = 3e-36
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
+ WRRSYD PPP+ K ++ QD P + + P TE L + + R LPY+
Sbjct: 135 RFMAWRRSYDTPPPPIEKGSEFSQDAD--PRYT----DIGGGPLTECLADVVTRFLPYFT 188
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ I +++ G+ VL+V HG SLR LVKH+
Sbjct: 189 DVIVPDLRTGRTVLIVAHGNSLRALVKHL 217
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 338 bits (870), Expect = e-117
Identities = 105/241 (43%), Positives = 137/241 (56%), Gaps = 33/241 (13%)
Query: 1 MSEDC--YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVF 58
M+ + LV+ RHGESEW K NLF GW D LSE GIKEA + G+ L+ G++FD F
Sbjct: 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAF 60
Query: 59 TSQLSRAQDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWR 117
TS L RAQ T QIIL+E+G+ E KS +LNER+YGDL G NK K+G EQVQIWR
Sbjct: 61 TSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWR 120
Query: 118 RSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATE 177
RSYD+ PP ESLK+T RVLPY+ I
Sbjct: 121 RSYDIAPPN-----------------------------GESLKDTAERVLPYYKSTIVPH 151
Query: 178 IKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLC 237
I +G+KVL+ HG SLR L+ +E L+ +I+K + T +P VY LD + ++ +
Sbjct: 152 ILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDGKYVS-KELID 210
Query: 238 D 238
+
Sbjct: 211 N 211
Score = 105 bits (265), Expect = 3e-27
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 29/89 (32%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 336
QVQIWRRSYD+ PP ESLK+T RVLPY+
Sbjct: 115 QVQIWRRSYDIAPPN-----------------------------GESLKDTAERVLPYYK 145
Query: 337 ENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
I I +G+KVL+ HG SLR L+ +
Sbjct: 146 STIVPHILKGEKVLIAAHGNSLRALIMDL 174
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 269 bits (689), Expect = 2e-89
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 39/274 (14%)
Query: 6 YTLVMLRHGESEWTKRNLFCGW-YDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSR 64
+ L ++RHGE+ + K + G D LSE G K+A AG L +F H F+S L R
Sbjct: 9 FALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN--NVKFTHAFSSDLMR 66
Query: 65 AQDTVQIILQELGQSP--EVTKSWRLNERHYGDLTGYNKLQM--ANKYGLEQVQIWRRSY 120
+ T+ IL+ V RL ER YG + G ++ K E+ ++
Sbjct: 67 TKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFT--- 123
Query: 121 DVLPPPM-------TKDHKYYQDIITNPNFKID-GPNEDQFPHTESLKETIMRVLPYWNE 172
PP + +++ + + D Q + L+ ++ + P
Sbjct: 124 ---PPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKN 180
Query: 173 NIATEIKQ------GKKVLVVTHGTSLRGLVKHI---------EQLSDAEIMKLNIPTAI 217
+ + VLVV+HG +R L + LS +E+M + T +
Sbjct: 181 HSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGM 240
Query: 218 PFV---YKLDANLTPTKPRQFLCDEETVSKAMEK 248
++ + PT + ++ ++ E
Sbjct: 241 SLFIINFEEGREVKPTVQCICMNLQDHLNGLTET 274
Score = 86.8 bits (215), Expect = 1e-19
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 268 GINNNFARFQVQIWRRSYDVLPPPMTKD--------HKYYQDIITNPNFKID-GPNEDQF 318
G + R + R V PP + +++ + + D Q
Sbjct: 102 GKALSELRAMAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQG 161
Query: 319 PHTESLKETIMRVLPYWNENIATEIKQ------GKKVLVVTHGTSLRGLVKHI 365
+ L+ ++ + P + + VLVV+HG +R L +
Sbjct: 162 SPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYF 214
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 229 bits (586), Expect = 2e-74
Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 6 YTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
TL + RHG++ + GW DS L E G++ A G L+D F + ++S RA
Sbjct: 14 VTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLKD--IHFMNAYSSDSGRA 71
Query: 66 QDTVQIILQELGQS-PEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQV-----QIWRRS 119
+T ++L+ QS ++ + +L E ++G G M + G ++ + S
Sbjct: 72 IETANLVLKYSEQSKLKLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFS 131
Query: 120 YDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIK 179
+ + D E + R+ ++ K
Sbjct: 132 IQEVIDLIRAA--------------------DPTKQAEDWELFSTRIKAEIDKISEEAAK 171
Query: 180 Q-GKKVLVVTHGTSLRGLVKHIEQLSD------AEIMKLNIPTAIPFVYKLD 224
G VLVV HG + L++ ++ A + K+ I V +
Sbjct: 172 DGGGNVLVVVHGLLITTLIEMLDSSKTKLGVENASVTKIVYQDGIYTVESVG 223
Score = 74.2 bits (183), Expect = 2e-15
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 279 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 338
++ V P + D E + R+ ++
Sbjct: 113 DAVGKAAGVTSPEELLKFSIQE-------VIDLIRAADPTKQAEDWELFSTRIKAEIDKI 165
Query: 339 IATEIKQ-GKKVLVVTHGTSLRGLVKHI 365
K G VLVV HG + L++ +
Sbjct: 166 SEEAAKDGGGNVLVVVHGLLITTLIEML 193
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 217 bits (555), Expect = 2e-69
Identities = 43/242 (17%), Positives = 76/242 (31%), Gaps = 47/242 (19%)
Query: 1 MSEDCYTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEG-----FQFD 55
M +++RHG++EW+K + G D L+ G + G+ +
Sbjct: 1 MPSLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNIT 60
Query: 56 HVFTSQLSRAQDTVQIILQELGQSP----EVTKSWRLNERHYGDLTGYNKLQMA---NKY 108
++FTS RA+ TV ++L+ L V L E YGD G ++
Sbjct: 61 YIFTSPRLRARQTVDLVLKPLSDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSR 120
Query: 109 GLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLK---ETIMR 165
GL++ + W D E+ + + R
Sbjct: 121 GLDKERPWNIWRDGCEN------------------------------GETTQQIGLRLSR 150
Query: 166 VLPYWNENIATEIKQGK--KVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKL 223
+ +G+ ++V HG +LR L + + Y
Sbjct: 151 AIARIQNLHRKHQSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYDD 210
Query: 224 DA 225
D
Sbjct: 211 DT 212
Score = 56.7 bits (137), Expect = 2e-09
Identities = 10/94 (10%), Positives = 21/94 (22%), Gaps = 35/94 (37%)
Query: 277 QVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLK---ETIMRVLP 333
+ + W D E+ + + R +
Sbjct: 124 KERPWNIWRDGCEN------------------------------GETTQQIGLRLSRAIA 153
Query: 334 YWNENIATEIKQGK--KVLVVTHGTSLRGLVKHI 365
+G+ ++V HG +LR
Sbjct: 154 RIQNLHRKHQSEGRASDIMVFAHGHALRYFAAIW 187
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 162 bits (410), Expect = 6e-48
Identities = 41/245 (16%), Positives = 73/245 (29%), Gaps = 54/245 (22%)
Query: 7 TLVMLRHGE-------SEWTKR------------------------NLFCGWYDSKLSEN 35
L + RHGE W + D+ ++
Sbjct: 2 CLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVF 61
Query: 36 GIKEAHVAGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPEVTKSWRLNERHYGD 95
G +A + G+ L + DHV+ S R T IL+ L Q ++
Sbjct: 62 GCMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQD----NHLKIRVEP--- 114
Query: 96 LTGYNKLQMANKYGLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPH 155
GL + W + P + ++ + ++ +
Sbjct: 115 -------------GLFEWTKWVAGSTL-PAWIPPSELAAANLSVDTTYR-PHIPVSKLAI 159
Query: 156 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKL-NIP 214
+ES I R E I+ +G +L+V H +SL ++ LS +
Sbjct: 160 SESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMV 219
Query: 215 TAIPF 219
IP+
Sbjct: 220 RKIPY 224
Score = 87.7 bits (217), Expect = 4e-20
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 276 FQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 335
F+ W + P + ++ + ++ + +ES I R
Sbjct: 117 FEWTKWVAGSTL-PAWIPPSELAAANLSVDTTYR-PHIPVSKLAISESYDTYINRSFQVT 174
Query: 336 NENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E I+ +G +L+V H +SL +
Sbjct: 175 KEIISECKSKGNNILIVAHASSLEACTCQL 204
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 151 bits (385), Expect = 1e-44
Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 42/210 (20%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
L++LRHGE+ W+ G + +L++ G +A +AGQ+L + V S R
Sbjct: 12 RLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVICSPRRRTL 71
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
DT ++ + + + L E YG G Q+ +W P
Sbjct: 72 DTAKLAGLTVNE-----VTGLLAEWDYGSYEGLTTPQIRESEP--DWLVWTH-----GCP 119
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
G ES+ + R A E + VL
Sbjct: 120 -------------------AG---------ESVAQVNDRADSAVAL--ALEHMSSRDVLF 149
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKLNIPTA 216
V+HG R ++ QL AE + +PTA
Sbjct: 150 VSHGHFSRAVITRWVQLPLAEGSRFAMPTA 179
Score = 48.4 bits (116), Expect = 6e-07
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 316 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
P ES+ + R A E + VL V+HG R ++
Sbjct: 116 HGCPAGESVAQVNDRADSAVAL--ALEHMSSRDVLFVSHGHFSRAVITRW 163
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 149 bits (377), Expect = 5e-43
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 46/260 (17%)
Query: 6 YTLVMLRHGESEWTKRNLFCGW-YDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSR 64
+ L ++RHGE+++ + L G D+ LS+ G ++A AG+ L+D F +VF S L R
Sbjct: 4 FALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLKDL--HFTNVFVSNLQR 61
Query: 65 AQDTVQIILQELGQSP--EVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDV 122
A T +IIL S E+ L ER +G G K + N + D
Sbjct: 62 AIQTAEIILGNNLHSSATEMILDPLLRERGFGVAEGRPKEHLKNMANAA----GQSCRDY 117
Query: 123 LPPP-------MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIA 175
PP T+ + + + E + V ++ +
Sbjct: 118 TPPGGETLEQVKTRFKMFLKSLFQ--------------RMFEEHGSALSSVPSEADQPVI 163
Query: 176 TEIKQ------GKKVLVVTHGTSLRGLVKHI---------EQLSDAEIMKLNIPTAI-PF 219
+ L+V+HG +R V+H+ L ++ T I F
Sbjct: 164 AGLADDGAQNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVFSPCPNTGISRF 223
Query: 220 VYKLDANLTPTKPRQFLCDE 239
++ + + + +
Sbjct: 224 IFTIHREESVLRATRIQGVF 243
Score = 38.3 bits (89), Expect = 0.002
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 28/83 (33%)
Query: 311 DGPNEDQFPHTESLKETIMRVLPYWNENIATEI--------------------------- 343
+ P E+L++ R +
Sbjct: 112 QSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSSVPSEADQPVIAGLADDGA 171
Query: 344 -KQGKKVLVVTHGTSLRGLVKHI 365
L+V+HG +R V+H+
Sbjct: 172 QNVPVHALMVSHGAFIRISVRHL 194
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 146 bits (370), Expect = 2e-42
Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 35/205 (17%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
TL + RHGE++W GW DS L+E G ++A G+ L ++TS RA
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRAL 60
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
+T +I+ + RL E H GD G ++ + W+ + P
Sbjct: 61 ETAEIVRGGRLIPIYQDE--RLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQ- 117
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
G E + R L + +G+ VL+
Sbjct: 118 -------------------RG---------ERFCDVQQRALEAVQS--IVDRHEGETVLI 147
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKL 211
VTHG L+ L+ + +
Sbjct: 148 VTHGVVLKTLMAAFKDTPLDHLWSP 172
Score = 48.0 bits (115), Expect = 1e-06
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 311 DGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
P+ E + R L + +G+ VL+VTHG L+ L+
Sbjct: 109 QAPHLYAPQRGERFCDVQQRALEAVQS--IVDRHEGETVLIVTHGVVLKTLMAAF 161
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 141 bits (358), Expect = 4e-41
Identities = 43/221 (19%), Positives = 71/221 (32%), Gaps = 54/221 (24%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
L ++RHGE+ W + GW D L+ G +A L F+S L RA+
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPS-----LPAFSSDLLRARR 57
Query: 68 TVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPPM 127
T ++ L E H+G L G + +Y + R PP
Sbjct: 58 TAELA------GFSPRLYPELREIHFGALEGALWETLDPRYK----EALLRFQGFHPP-- 105
Query: 128 TKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVV 187
G ESL RV + A ++
Sbjct: 106 ------------------GG---------ESLSAFQERVFRFLEGLKAP-------AVLF 131
Query: 188 THGTSLRGLVKHIEQ---LSDAEIMKLNIPTAIPFVYKLDA 225
THG +R +++ + + + + ++ P + LD
Sbjct: 132 THGGVVRAVLRALGEDGLVPPGSAVAVDWPRRVLVRLALDG 172
Score = 43.8 bits (104), Expect = 2e-05
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 317 QFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
P ESL RV + A ++ THG +R +++ +
Sbjct: 103 HPPGGESLSAFQERVFRFLEGLKAP-------AVLFTHGGVVRAVLRAL 144
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 138 bits (348), Expect = 8e-37
Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 44/257 (17%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
T+ + RHGE+E + G DS LS G K A + + ++ + V+TSQL
Sbjct: 248 TIYLCRHGENEHNLQGRIGG--DSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTI 305
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
T + + + LNE G ++ + Y E + Y
Sbjct: 306 QTAEAL------RLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYY---- 355
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
++P ES ++ + R+ P E+++ + VLV
Sbjct: 356 -------------------------RYPTGESYQDLVQRLEPVIM-----ELERQENVLV 385
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSKAM 246
+ H LR L+ + S E+ L P V KL + + E+V
Sbjct: 386 ICHQAVLRCLLAYFLDKSAEEMPYLKCPLHT--VLKLTPVAYGCRVESIYLNVESVCTHR 443
Query: 247 EKILKVHVGRPWGLQSH 263
E+ G ++ +
Sbjct: 444 ERSEDAKKGPNPLMRRN 460
Score = 45.5 bits (107), Expect = 2e-05
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 313 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++P ES ++ + R+ P E +++ + VLV+ H LR L+ +
Sbjct: 352 KYYYRYPTGESYQDLVQRLEPVIME-----LERQENVLVICHQAVLRCLLAYF 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 130 bits (327), Expect = 5e-34
Identities = 43/209 (20%), Positives = 76/209 (36%), Gaps = 42/209 (20%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
++ + RHGESE + G D LS G + + Q + D+ + VFTSQ+ R
Sbjct: 251 SIYLCRHGESELNLKGRIGG--DPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTI 308
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
T + + + LNE G ++ + Y LE + Y
Sbjct: 309 QTAEALSV------PYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRY---- 358
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 186
++P ES ++ + R+ P E+++ + VLV
Sbjct: 359 -------------------------RYPKGESYEDLVQRLEPVIM-----ELERQENVLV 388
Query: 187 VTHGTSLRGLVKHIEQLSDAEIMKLNIPT 215
+ H +R L+ + + E+ L P
Sbjct: 389 ICHQAVMRCLLAYFLDKAAEELPYLKCPL 417
Score = 46.9 bits (111), Expect = 6e-06
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 313 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
++P ES ++ + R+ P E +++ + VLV+ H +R L+ +
Sbjct: 355 KYRYRYPKGESYEDLVQRLEPVIME-----LERQENVLVICHQAVMRCLLAYF 402
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 118 bits (297), Expect = 9e-32
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 40/200 (20%)
Query: 1 MSEDCYTLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTS 60
MS + ++RHG+ + G D K+ E ++ +A + G+ + +S
Sbjct: 1 MSLKTLNIYLMRHGKVDAAPG--LHGQTDLKVKEAEQQQIAMAWKTK---GYDVAGIISS 55
Query: 61 QLSRAQDTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSY 120
LSR D QI+ ++ L E +GD G + + W+
Sbjct: 56 PLSRCHDLAQILAEQQLLPMTTED--DLQEMDFGDFDGMPFDLLTEHWKKLD-AFWQSPA 112
Query: 121 DVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQ 180
P + ESL RV W++ I
Sbjct: 113 HHSLP--------------------NA---------ESLSTFSQRVSRAWSQIIN---DI 140
Query: 181 GKKVLVVTHGTSLRGLVKHI 200
+L+VTHG +R ++ H+
Sbjct: 141 NDNLLIVTHGGVIRIILAHV 160
Score = 40.7 bits (96), Expect = 3e-04
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 313 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
P P+ ESL RV W++ I +L+VTHG +R ++ H+
Sbjct: 111 PAHHSLPNAESLSTFSQRVSRAWSQIIN---DINDNLLIVTHGGVIRIILAHV 160
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 110 bits (276), Expect = 2e-28
Identities = 39/228 (17%), Positives = 67/228 (29%), Gaps = 54/228 (23%)
Query: 7 TLVMLRHGESE-----------------------------WTKRNLFCGWYDSKLSENGI 37
+ LRHGE D+ L+ G
Sbjct: 6 WVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGW 65
Query: 38 KEAHVAGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPEVTKSWRLNERHYGDLT 97
+A + G+ +R G HV+ S R +T Q L L P
Sbjct: 66 FQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADP----------------- 108
Query: 98 GYNKLQMANKYGLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTE 157
+++ + GL + + W MT + + +K P + E
Sbjct: 109 ---SVKIKVEPGLFEFKNWHMPKG--IDFMTPIELCKAGLNVDMTYK---PYVEMDASAE 160
Query: 158 SLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSD 205
++ E R + K G V+ + H +L +V + +L D
Sbjct: 161 TMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRD 208
Score = 54.7 bits (131), Expect = 9e-09
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 281 WRRSYDVLPPPMTKDHKYYQDIITNPNFKID---GPNEDQFPHTESLKETIMRVLPYWNE 337
++ + + + +D P + E++ E R
Sbjct: 121 FKNWHMPKGIDFMTPIELCKA-----GLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQA 175
Query: 338 NIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ K G V+ + H +L +V +
Sbjct: 176 AVNDTEKDGGNVIFIGHAITLDQMVGAL 203
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 104 bits (259), Expect = 6e-26
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 59/257 (22%)
Query: 7 TLVMLRHGE-------SEWT------------------------KRNLFCGWYDSKLSEN 35
++++RHGE W + D LS
Sbjct: 11 GILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSC 70
Query: 36 GIKEAHVAGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPEVTKSWRLNERHYGD 95
GI +A +AG+ L D G + VF S R T + IL+EL
Sbjct: 71 GIFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEELKLEK--------------- 115
Query: 96 LTGYNKLQMANKYGLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPH 155
KL++ + G+ + W S +T + + + +++
Sbjct: 116 -----KLKIRVEPGIFEWMKWEASKAT-LTFLTLEELKEANFNVDLDYR-PALPRCSLMP 168
Query: 156 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI-----EQLSDAEIMK 210
ES + + R + I T + L+V+H ++L + + + D +
Sbjct: 169 AESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPRECGDFAQLV 228
Query: 211 LNIPTA-IPFVYKLDAN 226
IP+ + F + +
Sbjct: 229 RKIPSLGMCFCEENRED 245
Score = 50.5 bits (120), Expect = 3e-07
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 276 FQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 335
F+ W S +T + + + +++ ES + + R
Sbjct: 126 FEWMKWEASKAT-LTFLTLEELKEANFNVDLDYR-PALPRCSLMPAESYDQYVERCAVSM 183
Query: 336 NENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
+ I T + L+V+H ++L + +
Sbjct: 184 GQIINTCPQDMGITLIVSHSSALDSCTRPL 213
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 91.0 bits (226), Expect = 1e-21
Identities = 30/213 (14%), Positives = 64/213 (30%), Gaps = 56/213 (26%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRD--EGFQFDHVFTSQLSR 64
++++RHG+ E +L++ G K+A + G+ L+D + ++ S + R
Sbjct: 23 HIILVRHGQYER---RYKDDENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIR 79
Query: 65 AQDTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLP 124
A++T II + + + LNE
Sbjct: 80 AKETANIISKYFPDAN-LINDPNLNEGTPYLP---------------------------- 110
Query: 125 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEI-KQGKK 183
D + +KE R+ + + +
Sbjct: 111 ---------------------DPLPRHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEY 149
Query: 184 VLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTA 216
LV+ HG +R + Q+ ++ +
Sbjct: 150 QLVICHGNVIRYFLCRALQIPLFAWLRFSSYNC 182
Score = 34.0 bits (78), Expect = 0.045
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 311 DGPNEDQFPHTESLKETIMRVLPYWNENIATEI-KQGKKVLVVTHGTSLRGLVKHI 365
D + +KE R+ + + + LV+ HG +R +
Sbjct: 111 DPLPRHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCRA 166
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 89.9 bits (223), Expect = 2e-21
Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 57/213 (26%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
+ ++RH + D L+ G ++A + G L G +F+ + S ++RA
Sbjct: 12 HIFLIRHSQYHVDGS----LEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAI 67
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
+T II + L + L E +
Sbjct: 68 ETTDIISRHLPGVC-KVSTDLLREGAPIEP------------------------------ 96
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIAT---EIKQGKK 183
D P P E R+ + I ++
Sbjct: 97 -------------------DPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSY 137
Query: 184 VLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTA 216
+ + H +R +V Q ++L++
Sbjct: 138 EIFICHANVIRYIVCRALQFPPEGWLRLSLNNG 170
Score = 31.7 bits (72), Expect = 0.26
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 311 DGPNEDQFPHTESLKETIMRVLPYWNENIAT---EIKQGKKVLVVTHGTSLRGLVKHI 365
D P P E R+ + I ++ + + H +R +V
Sbjct: 97 DPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCRA 154
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 86.8 bits (215), Expect = 4e-20
Identities = 26/197 (13%), Positives = 57/197 (28%), Gaps = 42/197 (21%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQD 67
+ + H + + + + LSE G + A A ++ + + +S ++A +
Sbjct: 24 ALYITHPQVKI---DPAVPVPEWGLSERGAERAREASRLPWAKAL--RRIVSSAETKAIE 78
Query: 68 TVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPPM 127
T ++ + G + E+ + ++E P
Sbjct: 79 TAHMLAETSGAAIEIIE--AMHENDRSATGFL--------------------------PP 110
Query: 128 TKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVV 187
+ K +P G E + R++ + + + V
Sbjct: 111 PEFEKAADWFFAHPEESFQG--------WERAIDAQARIVEAVKA-VLDRHDARQPIAFV 161
Query: 188 THGTSLRGLVKHIEQLS 204
HG L HIE
Sbjct: 162 GHGGVGTLLKCHIEGRG 178
Score = 36.7 bits (85), Expect = 0.006
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 322 ESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 365
E + R++ + + + V HG L HI
Sbjct: 132 ERAIDAQARIVEAVKA-VLDRHDARQPIAFVGHGGVGTLLKCHI 174
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; 2.35A {Agrobacterium tumefaciens str}
Length = 173
Score = 65.1 bits (159), Expect = 7e-13
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 7 TLVMLRHGESEWTKRNLFCGWYDSK--LSENGIKEAHVAGQILRDEGFQFDHVFTSQLSR 64
+ +LRH ++ W D L+E G EA + + D ++ D + +S +R
Sbjct: 10 RVYLLRHAKAAWAAPGE----RDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAAR 65
Query: 65 AQDTVQIILQELGQSPEVT 83
+ T Q + + ++
Sbjct: 66 CRQTTQAWQRAFNEGIDIV 84
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 64.3 bits (157), Expect = 1e-12
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDSK--LSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
+ ++RHG++ + DS L+ NG E+ + L+ + + + V S RA
Sbjct: 3 VFIMRHGDAALDAAS------DSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRA 56
Query: 66 QDTVQIILQELGQSPEV 82
+ T++ + L
Sbjct: 57 EQTLEEVGDCLNLPSSA 73
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG, function; 2.00A {Nostoc SP}
Length = 172
Score = 62.7 bits (153), Expect = 6e-12
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 8 LVMLRHGESEWTKRNLFCGWYDS--KLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRA 65
L ++RHG +E K + D +L++ G ++ L G QFD + TS L RA
Sbjct: 3 LYLIRHGIAEAQKTGI----KDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRA 58
Query: 66 QDTVQIILQELGQSPEVTKSWRLNERHYGDL 96
+ T +I+L + + +
Sbjct: 59 RQTAEILLASGLSCQLEESNHLAPNGNIFNW 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 1e-11
Identities = 64/389 (16%), Positives = 125/389 (32%), Gaps = 124/389 (31%)
Query: 40 AHVAGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPEVTKSWRLNERHYGDLTGY 99
+V+ + + QFD V + + L E E Y L G
Sbjct: 66 GYVSSLVEPSKVGQFDQV-----------LNLCLTEF-------------ENCY--LEGN 99
Query: 100 N------KLQMANKYGLEQVQIWRRSY----DVLPPPMTKDHK--YYQDIITNPNFKI-- 145
+ KL N L + + ++Y + P K ++ + N ++
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVA 158
Query: 146 ----DGPNEDQF-----------PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHG 190
G +D F L + L + +KV T G
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVF--TQG 212
Query: 191 TSLRGLVKHIEQLSDAEIMKLNIPTAIPFV-------YKLDAN---LTPTKPRQFL---- 236
++ +++ D + + L+IP + P + Y + A TP + R +L
Sbjct: 213 LNILEWLENPSNTPDKDYL-LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 237 -CDEETVS--------------KAMEKILKVHVGRPWGLQSHVFLLGINNNFARFQVQIW 281
+ V+ ++ K + V +F +G R + +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITV-----------LFFIG-----VRCY-EAY 314
Query: 282 RRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRV---LPYWNEN 338
+ LPP + +D + + +P I ++Q +++ + + LP +
Sbjct: 315 PNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQ------VQDYVNKTNSHLPA-GKQ 365
Query: 339 IATEIKQGKKVLVVTHG--TSLRGLVKHI 365
+ + G K LVV+ G SL GL +
Sbjct: 366 VEISLVNGAKNLVVS-GPPQSLYGLNLTL 393
Score = 46.6 bits (110), Expect = 1e-05
Identities = 51/283 (18%), Positives = 88/283 (31%), Gaps = 92/283 (32%)
Query: 109 GLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRV-- 166
G+ + + + LPP + +D + + +P I ++Q +++ + +
Sbjct: 307 GVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQ------VQDYVNKTNS 358
Query: 167 -LPYWNENIATEIKQGKKVLVVTHG--TSLRGLVKHIEQLSDAEIMKLNIPTA-----IP 218
LP + + + G K LVV+ G SL GL + K P+ IP
Sbjct: 359 HLPA-GKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLR--------KAKAPSGLDQSRIP 408
Query: 219 FVYKLDANLTPTKPR---QFLCDEETVS---------KAMEKILK--VHVGRPWG---LQ 261
F + K + +FL V+ A + I K V + +Q
Sbjct: 409 F--------SERKLKFSNRFL----PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 262 SHVFLL--GINNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFP 319
V+ G + R + + II P + QF
Sbjct: 457 IPVYDTFDGSD----------LRVLSGSISERIV------DCIIRLP---VKWETTTQFK 497
Query: 320 HTESLKETIMRVL---PYWNENIAT---EIKQGKKVLVVTHGT 356
T +L P + K G V V+ GT
Sbjct: 498 AT--------HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 43.1 bits (101), Expect = 1e-04
Identities = 44/262 (16%), Positives = 72/262 (27%), Gaps = 92/262 (35%)
Query: 74 QELG-------QSPEVTKSWRLNERHYGDLTGY--------NKLQMANKYGLEQVQIWRR 118
QE G S W + H+ D G+ N + + +G E+ + R
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 119 SYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQ--FPHTES-LKET------------- 162
+Y M + + T FK + F + L T
Sbjct: 1687 NYS----AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 163 IMRVLPYWNENIATEIKQGKKVLVVT---HGTSLRG----LVKHIEQLSDAEIMKLNIPT 215
L +G T H SL G L S A++M +I +
Sbjct: 1743 AFEDL----------KSKGLIPADATFAGH--SL-GEYAALA------SLADVM--SIES 1781
Query: 216 AIPFVY---KLDANLTPTK-------------PRQF--LCDEETVSKAMEKILKVHVGRP 257
+ V+ P P + +E + +E++ K G
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK-RTG-- 1838
Query: 258 WGLQSHVFLLGI-NNNFARFQV 278
+L+ I N N Q
Sbjct: 1839 -------WLVEIVNYNVENQQY 1853
Score = 31.9 bits (72), Expect = 0.38
Identities = 34/248 (13%), Positives = 73/248 (29%), Gaps = 96/248 (38%)
Query: 137 IITNPNFK--IDGPNEDQFPHTESLKETIMRVLP-----YWNEN---------------I 174
+++ + + + P F L+E ++LP + ++ +
Sbjct: 10 TLSHGSLEHVLLVPT-ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 175 ATEIKQGKKVLVVTHGTSLRGLVKHIEQ--LSDAEIMKLNIPTAIPFVYKLDANLTPTKP 232
++ ++ K V L + E L +I + L A L
Sbjct: 69 SSLVEPSK---VGQFDQVLNLCLTEFENCYLEGNDI------------HALAAKLLQ--- 110
Query: 233 RQFLCDEETVSKAMEKILK------VHVGRPWGLQSHVFLL-----GINNNFARF--Q-- 277
+ +T ++++K + RP+ +S+ L G A F Q
Sbjct: 111 -----ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 278 VQIW----RRSYDVLPPPMTKD-------------------HKYYQ---DI---ITNPNF 308
+ R Y + D K + +I + NP+
Sbjct: 166 TDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS- 223
Query: 309 KIDGPNED 316
+ P++D
Sbjct: 224 --NTPDKD 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 6e-08
Identities = 63/385 (16%), Positives = 110/385 (28%), Gaps = 141/385 (36%)
Query: 5 CYTLVMLRHGESEWTKRNLFCGWYDSKLSE--NGIKEAHVAGQILRDEGFQFD---HVFT 59
C L+ T R ++++ + H++ D +
Sbjct: 266 CKILL---------TTR-------FKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLL 308
Query: 60 SQLS-RAQD-----------TVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANK 107
L R QD + II + + +W+ H +KL +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVN----CDKLTTIIE 360
Query: 108 YGLEQVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVL 167
S +VL P + K + + FP + + ++ ++
Sbjct: 361 ----------SSLNVLEPAEYR--KMFDR------LSV-------FPPSAHIPTILLSLI 395
Query: 168 PYWNENIATEI--------------KQGKKVLVVTHGTSLRGLVKHIEQLSDAE---IMK 210
W + I +++ KQ K+ + L L +E +
Sbjct: 396 --WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDH 452
Query: 211 LNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSKAMEKILKVHVGR---------PWGLQ 261
NIP + D +L P Q+ H+G L
Sbjct: 453 YNIPKT----FDSD-DLIPPYLDQYFYS--------------HIGHHLKNIEHPERMTLF 493
Query: 262 SHVFLLGINNNFARF-QVQI------WRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPN 314
VFL +F RF + +I W S +L + K+Y+ I
Sbjct: 494 RMVFL-----DF-RFLEQKIRHDSTAWNASGSILN--TLQQLKFYKPYIC---------- 535
Query: 315 EDQFPHTESLKETIMRVLPYWNENI 339
D P E L I+ LP EN+
Sbjct: 536 -DNDPKYERLVNAILDFLPKIEENL 559
Score = 51.4 bits (122), Expect = 3e-07
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%)
Query: 202 QLSDAEIMKLNIPTAIPFVYKLDANLTPTKPRQFLCDEETVSKAMEKILKVHVGRPWGLQ 261
Q +I+ + FV D P+ L EE ++ I+ +
Sbjct: 15 QYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEE-----IDHIIMS----KDAVS 62
Query: 262 SHVFLLGI-----NNNFARFQVQIWRRSYDVL----------PPPMTKDHKYYQDIITNP 306
+ L +F ++ R +Y L P MT+ + +D + N
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 307 NFKIDGPNEDQFPHTESLKETIMRVLPYWN-ENIATEIKQGKKVLVVTHG 355
N F K + R+ PY E++ K VL+ G
Sbjct: 123 N--------QVFA-----KYNVSRLQPYLKLRQALLELRPAKNVLI--DG 157
Score = 42.9 bits (100), Expect = 1e-04
Identities = 72/484 (14%), Positives = 134/484 (27%), Gaps = 191/484 (39%)
Query: 14 GESEWTKRNL-------FCGWYDSKLSENGIKEAHVAGQILRDEGFQFDHVFTSQLSRAQ 66
GE ++ +++ F +D K ++ K IL E + DH+ A
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK------SILSKE--EIDHII--MSKDAV 61
Query: 67 DTVQIILQELGQSPEVTKSWRLNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYDVLPPP 126
+ L E + ++ ++ N + + EQ Q P
Sbjct: 62 SGTLRLFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIKTEQRQ---------PSM 107
Query: 127 MTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN-ENIATEIKQGKKVL 185
MT+ + +D + N N F K + R+ PY E++ K VL
Sbjct: 108 MTRMYIEQRDRLYNDN--------QVFA-----KYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 186 VVTHG------TSLRGLV---KHIEQLSDAEIMKLNI-----PTAIP-----FVYKLDAN 226
+ G T + V ++ D +I LN+ P + +Y++D N
Sbjct: 155 I--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 227 LTP----------------TKPRQFL---------------CDEETVSKAME---KIL-- 250
T + R+ L + + A KIL
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLT 271
Query: 251 --------------KVHV---GRPWGL-------------------------QSHVFLLG 268
H+ L ++ L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 269 I-----NNNFARF----QVQIWR------RSYDVLPPPMTKDHKYYQDIITNPNFKIDGP 313
I + A + V + S +VL P + K + +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDR------LSV--- 380
Query: 314 NEDQFPHTESLKETIMRVLPYWNENIATEI--------------KQGKKVLVVTHGTSLR 359
FP + + ++ ++ W + I +++ KQ K+ + L
Sbjct: 381 ----FPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 360 GLVK 363
VK
Sbjct: 435 LKVK 438
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 33.8 bits (78), Expect = 0.089
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 172 ENIATEIKQGKKVLVVTHGTSLR--GLVKHI-EQLSDAEI 208
+ +I +VL+ G S++ G++ + + L ++
Sbjct: 41 AGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDV 80
Score = 31.9 bits (73), Expect = 0.35
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 337 ENIATEIKQGKKVLVVTHGTSLR 359
+ +I +VL+ G S++
Sbjct: 41 AGLREQIPHDARVLITYGGGSVK 63
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.12
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 123 LPPPMTKDHKY-------YQDI-ITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 173
L K K+ +++I I P +I + + + + + +W+
Sbjct: 153 LSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAI 211
Score = 32.8 bits (74), Expect = 0.12
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 288 LPPPMTKDHKY-------YQDI-ITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 338
L K K+ +++I I P +I + + + + + +W+
Sbjct: 153 LSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAI 211
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
pathway, isopentenyl phsophate kinase, beta-alpha
sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
{Thermoplasma acidophilum} PDB: 3lkk_A*
Length = 249
Score = 32.6 bits (75), Expect = 0.15
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 160 KETIMRVLPYWNENIATEIKQGKKVLVVTHG 190
K Y +I + + ++ V HG
Sbjct: 18 KSAYRTARTYAIRSIVKVLSGIEDLVCVVHG 48
Score = 32.6 bits (75), Expect = 0.15
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 325 KETIMRVLPYWNENIATEIKQGKKVLVVTHG 355
K Y +I + + ++ V HG
Sbjct: 18 KSAYRTARTYAIRSIVKVLSGIEDLVCVVHG 48
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 29.5 bits (66), Expect = 2.0
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 45 QILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSP---EVTKSWRLNERHY--GDLTGY 99
Q EG +++ T LS A D++ + L EL P EV R + G + Y
Sbjct: 952 QRRAHEGSVTNNLATVDLSAASDSISLALCELLLPPGWFEVLMDLRSPKGRLPDGSVVTY 1011
Query: 100 NKL-QMANKYGLE 111
K+ M N Y E
Sbjct: 1012 EKISSMGNGYTFE 1024
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 29.2 bits (66), Expect = 2.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 172 ENIATEIKQ--GKKVLVVTHGTSLR--GLVKHI-EQLSDAEI 208
I EIK +KVL + G S++ G+ + + L I
Sbjct: 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGI 73
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 2.5
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 75 ELGQSPEVTKSWR------LNERHYGDLTGYNKLQMANKYGLEQVQIWRRSYD 121
L Q PE + WR L E D Q + + ++ W +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQEL---DAASKVMEQEWREKAKKDLEEWNQRQS 128
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
cobalamin biosynthesis, metal-bindin parallel beta
sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
1qgo_A*
Length = 264
Score = 28.7 bits (64), Expect = 2.9
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 30 SKLSENGIKEAHV-------AGQILRDEGFQFDHVFTSQLSRAQDTVQIILQELGQSPEV 82
L + G+ H+ + D + + + A L LG++P +
Sbjct: 185 DSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGENPAI 244
Query: 83 TKSW--RLNE 90
+ L++
Sbjct: 245 RAMFVAHLHQ 254
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Length = 382
Score = 28.6 bits (65), Expect = 3.1
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 158 SLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAI 217
S +ETI RV + I +K L + V Q+ + ++ + +
Sbjct: 125 SARETIGRV-------ASGAI--AEKFLAQNSNVEIVAFVT---QIGEIKMNRDSFDPEF 172
Query: 218 PFVYKLDANLTPTKPRQFLC-DEETVSKAMEKILKV 252
+ C D +++I K
Sbjct: 173 QHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKY 208
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A
{Bifidobacterium longum subsp}
Length = 398
Score = 28.7 bits (65), Expect = 3.2
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 46/137 (33%)
Query: 161 ETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFV 220
ET RV E+ K+ L G H+ L + +
Sbjct: 142 ETASRV-------ALGEV--AKQFLDQAFGIRTVA---HVVALGGVQTNPDLPLPTPDDL 189
Query: 221 YKLDANLTPTKPRQFLC-DEETVSKAMEKILKVH--------------VGRPWGLQSHVF 265
LDA+ D+E + +E+I + G P G+ ++V
Sbjct: 190 EALDAS-------PVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVE 242
Query: 266 ------------LLGIN 270
++GI
Sbjct: 243 SDRRLDAALASAIMGIQ 259
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium
tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Length = 407
Score = 28.3 bits (64), Expect = 4.3
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 47/137 (34%)
Query: 161 ETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIEQLSDAEIMKLNIPTAIPFV 220
ET RV A + + L G + H+ + + + P A
Sbjct: 140 ETAARV-------AAGTV--ARAFLRQALGVEVLS---HVISIGASAPYEGPPPRAEDLP 187
Query: 221 YKLDANLTPTKPRQFLC-DEETVSKAMEKILKVH--------------VGRPWGLQSHVF 265
+DA+ D+ + + +I +G P GL S
Sbjct: 188 -AIDAS-------PVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTS 239
Query: 266 ------------LLGIN 270
++GI
Sbjct: 240 GDHRLDSQLAAAVMGIQ 256
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria
phage MU} SCOP: a.4.1.14
Length = 129
Score = 27.2 bits (60), Expect = 4.8
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 84 KSWRLNERH---YGDLTGYNKLQMANKYGLEQVQIWR 117
++ R + D G N ++ +YG+ +++
Sbjct: 75 QALDSLIRDLRIWNDFNGRNVSELTTRYGVTFNTVYK 111
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 27.6 bits (62), Expect = 5.3
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 19/55 (34%)
Query: 137 IITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIK-QGKKVLVVTHG 190
+IT + + + D E IA+EI L++ HG
Sbjct: 13 VITRKDSEEPAIDRDNL------------------ERIASEIGNASPSSLMIVHG 49
Score = 27.6 bits (62), Expect = 5.3
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 19/55 (34%)
Query: 302 IITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIK-QGKKVLVVTHG 355
+IT + + + D E IA+EI L++ HG
Sbjct: 13 VITRKDSEEPAIDRDNL------------------ERIASEIGNASPSSLMIVHG 49
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 27.7 bits (62), Expect = 5.8
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 172 ENIATEIKQ-GKKVLVVTHGTSLRGLVKH--IEQLSDAEI 208
+ E+ + G++ VV + ++ + +
Sbjct: 31 NILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRV 70
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural
genomics consortium, SGC, signaling protein; 2.26A
{Homo sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 5.8
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 37 IKEAHVAGQILRDEGF-QFDHVFTSQLSRAQDTVQIILQELGQSPEVTKSW-RLNE-RHY 93
+KE + Q+ R + + + L + IL +L + + W R+N HY
Sbjct: 39 VKE-KIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHY 97
Query: 94 G 94
Sbjct: 98 N 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,728,583
Number of extensions: 342969
Number of successful extensions: 1193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1080
Number of HSP's successfully gapped: 98
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)