BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7396
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 80/120 (66%), Gaps = 8/120 (6%)
Query: 22 QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
++ ++SAA GK + EMK+ +EHTN GTLHGG+TATLVD +S ALL ++
Sbjct: 27 KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALL--------CTERG 78
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
GVSVD++ITY+ AK+GE IVI + K GK LAF V + NK TG L+A G HTK++
Sbjct: 79 APGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 138
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 80/120 (66%), Gaps = 8/120 (6%)
Query: 22 QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
++ ++SAA GK + EMK+ +EHTN GTLHGG+TATLVD +S ALL ++
Sbjct: 32 KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALL--------CTERG 83
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
GVSVD++ITY+ AK+GE IVI + K GK LAF V + NK TG L+A G HTK++
Sbjct: 84 APGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 143
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 8/120 (6%)
Query: 22 QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
++ ++SAA GK + E K+ +EHTN GTLHGG+TATLVD +S ALL ++
Sbjct: 27 KITLVSAAPGKVICEXKVEEEHTNAIGTLHGGLTATLVDNISTXALL--------CTERG 78
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
GVSVD +ITY AK+GE IVI + K GK LAF V + NK TG L+A G HTK++
Sbjct: 79 APGVSVDXNITYXSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 138
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 21 HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKI 80
+V ++SAA K + E K+ ++HTN GTLHGG+TATLVD +S AL ++
Sbjct: 26 EKVTLVSAAPEKLICEXKVEEQHTNKLGTLHGGLTATLVDSISTXALX--------CTER 77
Query: 81 SHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140
GVSVD +ITY AKIGE+IVI + K GK LAF V + NK TG L+A G HTK+
Sbjct: 78 GAPGVSVDXNITYXSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKH 137
Query: 141 I 141
+
Sbjct: 138 L 138
>pdb|4I82|A Chain A, Crystal Structure Of Hypothetical Thioesterase Protein
Sp_1851 From Streptococcus Pneumoniae Tigr4
pdb|4I82|B Chain B, Crystal Structure Of Hypothetical Thioesterase Protein
Sp_1851 From Streptococcus Pneumoniae Tigr4
Length = 137
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 13 HLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKN 72
H + ++ I DG V K+ N +G HGG TL D +SG +++
Sbjct: 8 HFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVIS--- 64
Query: 73 VMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALV 132
+ GV++ I Y++ K+ + + I+ G+ +DV I N+E G V
Sbjct: 65 -------LGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQE-GRNV 116
Query: 133 ATGVHTKYIAG 143
T ++ G
Sbjct: 117 CKATFTMFVTG 127
>pdb|3LBB|A Chain A, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159
pdb|3LBB|B Chain B, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159
pdb|3LBE|A Chain A, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
pdb|3LBE|B Chain B, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
pdb|3LBE|C Chain C, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
pdb|3LBE|D Chain D, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
Length = 163
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 7 GKTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCA 66
G + NHL ++ + +++S G + ++ + N +G HGG TL D +SG
Sbjct: 33 GSMSDNHLHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLV 92
Query: 67 LLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106
S V++ I Y++ K+G+ ++I+
Sbjct: 93 ----------SISTGFDAVTLQSSINYLKSGKLGDTLLID 122
>pdb|2HBO|A Chain A, Crystal Structure Of A Thioesterase Superfamily Protein
(Cc_3309) From Caulobacter Vibrioides At 1.85 A
Resolution
Length = 158
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 31 GKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH 90
G+ ++ + HTN G HGG + D G + K S+S V+V L
Sbjct: 42 GQARLAFRVEEHHTNGLGNCHGGXLXSFADXAWGRIISLQK---------SYSWVTVRLX 92
Query: 91 ITYIRGAKIGEQI 103
++ GAK+G+ +
Sbjct: 93 CDFLSGAKLGDWV 105
>pdb|3NWZ|A Chain A, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|B Chain B, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|C Chain C, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|D Chain D, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
Length = 176
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 6 LGKTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGC 65
L K + + L S Q+ DG+ + I N +HGG+TATL+D G
Sbjct: 37 LAKQERRYATYLASLTQIESQEREDGRFEVRLPIGPLVNNPLNXVHGGITATLLDTAXGQ 96
Query: 66 ALLTHKNVMEESSKISHSGVSVDLHITYIR 95
+ ++ + + S V+ +L+I Y++
Sbjct: 97 XV--NRQLPD-----GQSAVTSELNIHYVK 119
>pdb|3E29|A Chain A, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|B Chain B, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|C Chain C, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|D Chain D, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a
Length = 144
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 24 NILSAADGKCVAEMKISQE--HTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
++L A + V +K +E + + HGG+ ATLVD A+ + K
Sbjct: 25 SVLEAGEQGIVLGIKWREELISSPEIRSTHGGILATLVDAAGDYAV---------ALKTG 75
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
H + D H+ Y R A G+ + E GK+ A + + + G LVA+G
Sbjct: 76 HPVPTXDXHVDYHRVATPGD-LRAEGQVIHFGKRFATAHARVLDXD-GNLVASG 127
>pdb|2QWZ|A Chain A, Crystal Structure Of A Putative Thioesterase (Tm1040_1390)
From Silicibacter Sp. Tm1040 At 2.15 A Resolution
pdb|2QWZ|B Chain B, Crystal Structure Of A Putative Thioesterase (Tm1040_1390)
From Silicibacter Sp. Tm1040 At 2.15 A Resolution
pdb|2QWZ|C Chain C, Crystal Structure Of A Putative Thioesterase (Tm1040_1390)
From Silicibacter Sp. Tm1040 At 2.15 A Resolution
pdb|2QWZ|D Chain D, Crystal Structure Of A Putative Thioesterase (Tm1040_1390)
From Silicibacter Sp. Tm1040 At 2.15 A Resolution
Length = 159
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 13 HLKDLFSYHQ--VNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTH 70
+L+++F Q +I + A G+ + + + H GT+ G L D +L H
Sbjct: 32 YLEEVFPQIQGEFSIDALAKGEITXRLNVQERHLRPGGTVSGPSXFALADVSVYALVLAH 91
Query: 71 --KNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKET 128
+ + V+ + + + R + G ++ ++ K G+ LA D+L+ ++
Sbjct: 92 LGREAL---------AVTTNASLDFXRKPESGRDLLGQARLLKLGRTLAVGDILLFSEGX 142
Query: 129 GALVATGVHTKYIA 142
A VA T I
Sbjct: 143 EAPVARSTXTYSIP 156
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 29.3 bits (64), Expect = 0.75, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 15 KDLFSYHQVNILSAADGKCVAEM-KISQEHT--NTFGTLHGGMTATLVDYLSGCALLTHK 71
KD+F+YH+V+ +CVA M KI E T TF H + T+V +SG L HK
Sbjct: 204 KDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPH--VIRTVVSLISG--LPEHK 259
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 29.3 bits (64), Expect = 0.75, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 15 KDLFSYHQVNILSAADGKCVAEM-KISQEHT--NTFGTLHGGMTATLVDYLSGCALLTHK 71
KD+F+YH+V+ +CVA M KI E T TF H + T+V +SG L HK
Sbjct: 204 KDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPH--VIRTVVSLISG--LPEHK 259
>pdb|3E8P|A Chain A, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|B Chain B, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|C Chain C, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|D Chain D, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246
Length = 164
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 50 LHGGMTATLVDYLSG----CALLTHKN--VMEESSKISHSGVSVDLHITYIRGAKIGEQI 103
LHGG+TAT++D + G L+ ++ +EE + + ++D + Y+R + G+
Sbjct: 68 LHGGVTATVLDVVGGLTAFAGLVASRDDWTIEELQQRLQTLGTIDXRVDYLRPGR-GQIF 126
Query: 104 VIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
S + G +++ + N E G +A G T
Sbjct: 127 TGTGSVIRAGNRVSVCRXELHN-EQGTHIAFGTGT 160
>pdb|1J1Y|A Chain A, Crystal Structure Of Paai From Thermus Thermophilus Hb8
pdb|1J1Y|B Chain B, Crystal Structure Of Paai From Thermus Thermophilus Hb8
pdb|1WLU|A Chain A, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|A Chain A, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|B Chain B, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|C Chain C, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|D Chain D, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|E Chain E, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|F Chain F, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|G Chain G, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WLV|H Chain H, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|A Chain A, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|B Chain B, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|C Chain C, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|D Chain D, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|E Chain E, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|F Chain F, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|G Chain G, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WM6|H Chain H, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|A Chain A, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|B Chain B, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|C Chain C, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|D Chain D, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|E Chain E, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|F Chain F, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|G Chain G, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
pdb|1WN3|H Chain H, Crystal Structure Of Tt0310 Protein From Thermus
Thermophilus Hb8
Length = 136
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 23 VNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
+ +L A G+ V ++ +H N GT HGG L D S AL +S
Sbjct: 11 LKVLHLAPGEAVVAGEVRADHLNLHGTAHGGFLYALAD--SAFAL---------ASNTRG 59
Query: 83 SGVSVDLHITYIRGAKIGEQI 103
V++ + Y R G ++
Sbjct: 60 PAVALSCRMDYFRPLGAGARV 80
>pdb|4GAH|A Chain A, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
pdb|4GAH|B Chain B, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
Length = 209
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 48 GTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106
G +HGG AT++D G CA++ VM + +L+I Y R + ++I
Sbjct: 110 GFIHGGAIATMIDATVGMCAMMAGGIVM-----------TANLNINYKRPIPLCSVVMIN 158
Query: 107 SSTKKC-GKKL 116
S K G+K
Sbjct: 159 SQLDKVEGRKF 169
>pdb|4AE8|A Chain A, Crystal Structure Of Human Them4
pdb|4AE8|B Chain B, Crystal Structure Of Human Them4
pdb|4AE8|C Chain C, Crystal Structure Of Human Them4
pdb|4AE8|D Chain D, Crystal Structure Of Human Them4
Length = 211
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 48 GTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106
G +HGG AT++D G CA++ VM + +L+I Y R + ++I
Sbjct: 120 GFIHGGAIATMIDATVGMCAMMAGGIVM-----------TANLNINYKRPIPLCSVVMIN 168
Query: 107 SSTKKC-GKKL 116
S K G+K
Sbjct: 169 SQLDKVEGRKF 179
>pdb|3VST|A Chain A, The Complex Structure Of Xylc With Tris
pdb|3VST|B Chain B, The Complex Structure Of Xylc With Tris
pdb|3VST|C Chain C, The Complex Structure Of Xylc With Tris
pdb|3VST|D Chain D, The Complex Structure Of Xylc With Tris
pdb|3VSU|A Chain A, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|B Chain B, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|C Chain C, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|D Chain D, The Complex Structure Of Xylc With Xylobiose
pdb|3VSV|A Chain A, The Complex Structure Of Xylc With Xylose
pdb|3VSV|B Chain B, The Complex Structure Of Xylc With Xylose
pdb|3VSV|C Chain C, The Complex Structure Of Xylc With Xylose
pdb|3VSV|D Chain D, The Complex Structure Of Xylc With Xylose
Length = 638
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 62 LSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTK 110
++G ++ H+ V E K + G+S ITY A GE++VI+ S +
Sbjct: 32 MAGDTIIVHEGVYREWVKPKYKGLSDKRRITY--KAAEGEKVVIKGSER 78
>pdb|1VH9|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VH9|B Chain B, Crystal Structure Of A Putative Thioesterase
Length = 149
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 35 AEMKISQEHTNTFGTLHGGMTATLVDYLSGCA 66
AEM + FG LHGG +A L + L A
Sbjct: 40 AEMPVDTRTHQPFGLLHGGASAALAETLGSMA 71
>pdb|1SC0|A Chain A, X-Ray Structure Of Yb61_haein Northeast Structural
Genomics Consortium Target Ir63
pdb|1SC0|B Chain B, X-Ray Structure Of Yb61_haein Northeast Structural
Genomics Consortium Target Ir63
Length = 138
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 35 AEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYI 94
A + FG LHGG++ L + + L +EE + V +D++ ++
Sbjct: 38 ATXPVDHRTXQPFGVLHGGVSVALAETIGS---LAGSLCLEEGKTV----VGLDINANHL 90
Query: 95 RGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKE 127
R + G ++ ++ G+ + + I+ +E
Sbjct: 91 RPVRSG-KVTARATPINLGRNIQVWQIDIRTEE 122
>pdb|2B6E|A Chain A, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|B Chain B, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|C Chain C, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|D Chain D, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|E Chain E, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|F Chain F, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|G Chain G, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|H Chain H, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|3LZ7|A Chain A, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
pdb|3LZ7|B Chain B, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
pdb|3LZ7|C Chain C, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
pdb|3LZ7|D Chain D, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
Length = 146
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 35 AEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYI 94
A + FG LHGG++ L + + L +EE + V +D++ ++
Sbjct: 38 ATXPVDHRTXQPFGVLHGGVSVALAETIGS---LAGSLCLEEGKTV----VGLDINANHL 90
Query: 95 RGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKE 127
R + G ++ ++ G+ + + I+ +E
Sbjct: 91 RPVRSG-KVTARATPINLGRNIQVWQIDIRTEE 122
>pdb|2DSL|A Chain A, Mutant N33d Structure Of Phenylacetic Acid Degradation
Protein Paai From Thermus Thermophilus Hb8
pdb|2DSL|B Chain B, Mutant N33d Structure Of Phenylacetic Acid Degradation
Protein Paai From Thermus Thermophilus Hb8
Length = 136
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 23 VNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
+ +L A G+ V ++ +H + GT HGG L D S AL +S
Sbjct: 11 LKVLHLAPGEAVVAGEVRADHLDLHGTAHGGFLYALAD--SAFAL---------ASNTRG 59
Query: 83 SGVSVDLHITYIRGAKIGEQI 103
V++ + Y R G ++
Sbjct: 60 PAVALSCRMDYFRPLGAGARV 80
>pdb|1ZKI|A Chain A, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
pdb|1ZKI|B Chain B, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
Length = 133
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 23 VNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
++ +S DG + + N G HGG +L D G A + +S
Sbjct: 22 LDPVSLGDGVAEVRLPXAAHLRNRGGVXHGGALFSLXDVTXGLACSSSHGFDRQS----- 76
Query: 83 SGVSVDLHITYIRGAKIGE 101
V+++ I YIR GE
Sbjct: 77 --VTLECKINYIRAVADGE 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,981,170
Number of Sequences: 62578
Number of extensions: 137266
Number of successful extensions: 406
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 29
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)