Query psy7396
Match_columns 145
No_of_seqs 110 out of 1072
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:08:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 1.8E-27 3.9E-32 163.1 16.2 119 15-142 18-136 (136)
2 PRK10254 thioesterase; Provisi 100.0 5.7E-27 1.2E-31 160.6 17.2 121 13-142 16-136 (137)
3 TIGR00369 unchar_dom_1 unchara 99.9 1.9E-26 4.2E-31 154.2 15.4 117 16-141 1-117 (117)
4 PLN02322 acyl-CoA thioesterase 99.9 9E-26 2E-30 157.0 16.4 122 13-142 8-134 (154)
5 TIGR02286 PaaD phenylacetic ac 99.9 4.7E-25 1E-29 146.9 16.2 113 19-142 2-114 (114)
6 PRK11688 hypothetical protein; 99.9 2.6E-25 5.6E-30 155.5 14.8 125 15-141 21-153 (154)
7 COG2050 PaaI HGG motif-contain 99.9 1.6E-24 3.4E-29 149.5 15.4 122 15-144 18-139 (141)
8 KOG3328|consensus 99.9 3.7E-23 8.1E-28 140.5 12.8 116 21-144 27-142 (148)
9 TIGR02447 yiiD_Cterm thioester 99.9 3E-21 6.5E-26 132.7 14.8 120 15-143 6-138 (138)
10 cd03443 PaaI_thioesterase PaaI 99.9 7.9E-21 1.7E-25 125.3 15.8 111 21-140 2-112 (113)
11 PF14539 DUF4442: Domain of un 99.8 8E-18 1.7E-22 114.8 13.5 119 13-141 11-132 (132)
12 cd03442 BFIT_BACH Brown fat-in 99.8 3.8E-17 8.1E-22 109.1 15.0 106 29-143 4-114 (123)
13 PRK10694 acyl-CoA esterase; Pr 99.7 1.6E-16 3.4E-21 108.5 14.3 106 29-143 8-121 (133)
14 COG1607 Acyl-CoA hydrolase [Li 99.7 6.4E-16 1.4E-20 107.4 14.9 105 30-143 11-120 (157)
15 PF03061 4HBT: Thioesterase su 99.7 5E-16 1.1E-20 96.0 11.1 79 47-133 1-79 (79)
16 PF09500 YiiD_Cterm: Putative 99.6 4.1E-14 9E-19 97.4 13.5 119 16-143 13-144 (144)
17 cd00556 Thioesterase_II Thioes 99.6 2.1E-14 4.6E-19 92.4 10.2 85 47-140 14-98 (99)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.6 1.6E-13 3.6E-18 88.6 13.6 107 35-142 3-109 (110)
19 PRK04424 fatty acid biosynthes 99.5 1.1E-12 2.4E-17 94.2 16.1 104 24-141 76-181 (185)
20 PRK10800 acyl-CoA thioesterase 99.5 8.4E-12 1.8E-16 84.5 14.4 110 34-144 4-113 (130)
21 PLN02647 acyl-CoA thioesterase 99.4 5.6E-12 1.2E-16 100.7 13.3 118 25-143 80-210 (437)
22 TIGR02799 thio_ybgC tol-pal sy 99.4 1.8E-11 4E-16 82.1 13.3 108 35-144 3-111 (126)
23 COG4109 Predicted transcriptio 99.4 4.3E-12 9.2E-17 97.6 8.7 119 5-142 313-431 (432)
24 COG0824 FcbC Predicted thioest 99.3 7.3E-11 1.6E-15 81.0 13.9 111 32-144 5-115 (137)
25 cd03440 hot_dog The hotdog fol 99.3 1.7E-10 3.6E-15 70.9 13.8 97 35-139 3-99 (100)
26 PLN02647 acyl-CoA thioesterase 99.3 7.8E-11 1.7E-15 94.2 14.7 107 28-143 286-402 (437)
27 KOG4781|consensus 99.3 1.9E-11 4.1E-16 89.0 9.0 92 27-126 121-212 (237)
28 TIGR00051 acyl-CoA thioester h 99.3 1.4E-10 3.1E-15 76.4 12.6 105 37-142 2-106 (117)
29 PF13279 4HBT_2: Thioesterase- 99.2 1.9E-09 4.2E-14 71.7 13.6 104 39-144 1-106 (121)
30 PRK07531 bifunctional 3-hydrox 99.1 3.4E-09 7.5E-14 86.6 14.2 113 29-143 342-454 (495)
31 cd03445 Thioesterase_II_repeat 99.0 7.2E-09 1.6E-13 66.7 11.0 80 46-140 14-93 (94)
32 PF13622 4HBT_3: Thioesterase- 99.0 1.2E-08 2.5E-13 76.3 12.7 82 47-143 9-90 (255)
33 cd03449 R_hydratase (R)-hydrat 98.9 3.5E-08 7.5E-13 66.1 11.6 81 48-141 46-128 (128)
34 cd01288 FabZ FabZ is a 17kD be 98.8 1.6E-06 3.5E-11 58.2 16.1 111 24-141 12-130 (131)
35 PRK00006 fabZ (3R)-hydroxymyri 98.8 2.5E-06 5.3E-11 58.9 17.1 112 24-143 27-146 (147)
36 COG5496 Predicted thioesterase 98.7 2.4E-06 5.3E-11 57.0 14.1 102 34-144 8-116 (130)
37 TIGR00189 tesB acyl-CoA thioes 98.5 8E-07 1.7E-11 67.2 9.4 78 48-140 21-98 (271)
38 PLN02370 acyl-ACP thioesterase 98.5 1.4E-05 3.1E-10 64.0 15.0 111 33-143 140-256 (419)
39 cd03455 SAV4209 SAV4209 is a S 98.5 6.2E-06 1.3E-10 55.2 11.1 77 49-139 45-122 (123)
40 cd03451 FkbR2 FkbR2 is a Strep 98.4 3.9E-06 8.5E-11 57.5 9.6 56 89-145 84-146 (146)
41 cd01289 FabA_like Domain of un 98.4 8.8E-05 1.9E-09 50.8 16.0 114 24-142 18-137 (138)
42 KOG2763|consensus 98.4 4E-06 8.8E-11 65.4 9.9 91 27-126 194-285 (357)
43 cd03441 R_hydratase_like (R)-h 98.4 1.3E-05 2.8E-10 53.3 11.0 80 47-138 42-125 (127)
44 cd03447 FAS_MaoC FAS_MaoC, the 98.3 2.5E-05 5.3E-10 52.8 12.0 80 49-140 44-124 (126)
45 cd03452 MaoC_C MaoC_C The C-t 98.3 1.3E-05 2.7E-10 55.2 10.7 83 49-144 52-141 (142)
46 TIGR01750 fabZ beta-hydroxyacy 98.3 0.00013 2.8E-09 49.8 15.5 112 24-140 20-139 (140)
47 PRK10526 acyl-CoA thioesterase 98.3 1.1E-05 2.3E-10 61.9 10.9 82 46-142 30-111 (286)
48 cd03446 MaoC_like MoaC_like 98.3 1.2E-05 2.6E-10 54.7 9.9 51 89-140 83-139 (140)
49 cd03453 SAV4209_like SAV4209_l 98.3 3.4E-05 7.5E-10 51.9 11.5 76 49-138 46-125 (127)
50 cd00493 FabA_FabZ FabA/Z, beta 98.2 0.00027 5.8E-09 47.2 15.4 110 24-138 11-128 (131)
51 PLN02868 acyl-CoA thioesterase 98.2 8.7E-06 1.9E-10 65.2 9.4 115 8-142 123-237 (413)
52 PRK13692 (3R)-hydroxyacyl-ACP 98.2 3.4E-05 7.3E-10 54.2 10.8 59 84-143 84-146 (159)
53 cd03454 YdeM YdeM is a Bacillu 98.2 3.6E-05 7.9E-10 52.5 10.3 52 89-141 81-139 (140)
54 PF01643 Acyl-ACP_TE: Acyl-ACP 98.1 0.00014 3.1E-09 54.9 13.7 109 34-143 5-120 (261)
55 PRK13188 bifunctional UDP-3-O- 98.1 0.00039 8.4E-09 56.5 16.7 113 25-144 342-462 (464)
56 PRK08190 bifunctional enoyl-Co 98.1 0.00011 2.4E-09 59.9 12.5 97 35-144 37-144 (466)
57 PRK13691 (3R)-hydroxyacyl-ACP 98.0 0.00012 2.7E-09 51.7 10.1 58 86-144 86-147 (166)
58 PF07977 FabA: FabA-like domai 98.0 0.0017 3.7E-08 44.2 14.9 110 24-136 12-138 (138)
59 cd03444 Thioesterase_II_repeat 97.9 0.00058 1.3E-08 44.5 11.1 87 49-139 16-102 (104)
60 cd01287 FabA FabA, beta-hydrox 97.9 0.0039 8.4E-08 43.4 15.6 108 32-142 28-147 (150)
61 cd03450 NodN NodN (nodulation 97.7 0.001 2.2E-08 46.2 10.8 85 49-141 58-147 (149)
62 KOG3016|consensus 97.7 0.0006 1.3E-08 51.8 10.1 105 24-144 15-119 (294)
63 PF13622 4HBT_3: Thioesterase- 97.5 0.0048 1E-07 46.0 12.6 99 32-141 156-255 (255)
64 TIGR00189 tesB acyl-CoA thioes 97.5 0.0044 9.6E-08 46.8 12.5 102 33-140 167-269 (271)
65 cd03448 HDE_HSD HDE_HSD The R 97.5 0.0022 4.8E-08 43.0 9.3 71 49-135 46-116 (122)
66 COG0764 FabA 3-hydroxymyristoy 97.4 0.0023 5E-08 44.4 8.8 60 83-144 85-146 (147)
67 COG2030 MaoC Acyl dehydratase 97.4 0.0059 1.3E-07 42.8 10.8 58 86-144 96-157 (159)
68 PRK13693 (3R)-hydroxyacyl-ACP 97.3 0.011 2.4E-07 40.7 11.3 78 49-140 56-140 (142)
69 COG1946 TesB Acyl-CoA thioeste 97.3 0.0012 2.6E-08 50.3 6.8 83 46-143 30-112 (289)
70 PF01575 MaoC_dehydratas: MaoC 97.3 0.0019 4.2E-08 43.0 7.1 66 48-124 51-116 (122)
71 PF13452 MaoC_dehydrat_N: N-te 97.2 0.0026 5.7E-08 42.7 7.8 53 81-134 72-131 (132)
72 TIGR02278 PaaN-DH phenylacetic 97.2 0.0026 5.6E-08 54.2 8.9 95 35-142 552-662 (663)
73 KOG2763|consensus 97.1 0.016 3.4E-07 45.6 11.4 105 39-143 15-126 (357)
74 PRK10526 acyl-CoA thioesterase 97.0 0.016 3.4E-07 44.5 11.0 106 34-144 179-285 (286)
75 TIGR01749 fabA beta-hydroxyacy 97.0 0.069 1.5E-06 37.9 15.0 96 32-136 51-156 (169)
76 PF01643 Acyl-ACP_TE: Acyl-ACP 97.0 0.021 4.5E-07 43.1 11.1 95 31-139 164-259 (261)
77 PLN02864 enoyl-CoA hydratase 96.7 0.039 8.4E-07 42.9 11.2 93 33-141 204-305 (310)
78 PRK05174 3-hydroxydecanoyl-(ac 96.7 0.12 2.7E-06 36.7 16.0 96 32-136 54-159 (172)
79 PRK11563 bifunctional aldehyde 96.7 0.0075 1.6E-07 51.5 7.6 95 35-142 564-674 (675)
80 COG1946 TesB Acyl-CoA thioeste 96.6 0.019 4E-07 43.9 8.0 104 34-142 179-283 (289)
81 PF02551 Acyl_CoA_thio: Acyl-C 96.2 0.046 9.9E-07 37.1 7.5 82 49-136 45-127 (131)
82 PLN02868 acyl-CoA thioesterase 96.2 0.053 1.1E-06 43.6 9.3 96 34-137 312-409 (413)
83 PLN02864 enoyl-CoA hydratase 96.1 0.067 1.5E-06 41.5 9.0 61 83-143 93-157 (310)
84 PLN02370 acyl-ACP thioesterase 95.9 0.21 4.5E-06 40.4 11.2 97 32-142 301-403 (419)
85 PF03756 AfsA: A-factor biosyn 95.9 0.31 6.6E-06 32.8 14.7 104 30-140 19-131 (132)
86 KOG3016|consensus 94.6 0.2 4.3E-06 38.4 7.1 80 49-135 209-291 (294)
87 COG3884 FatA Acyl-ACP thioeste 94.4 0.71 1.5E-05 34.4 9.4 62 81-144 53-114 (250)
88 PF14765 PS-DH: Polyketide syn 94.0 1.9 4.2E-05 32.3 15.3 102 31-141 182-287 (295)
89 COG3884 FatA Acyl-ACP thioeste 93.3 0.49 1.1E-05 35.2 6.8 71 33-116 153-223 (250)
90 TIGR02813 omega_3_PfaA polyket 82.0 8 0.00017 38.5 8.2 85 52-143 2489-2574(2582)
91 COG3777 Uncharacterized conser 74.2 12 0.00026 28.4 5.5 86 33-138 186-272 (273)
92 COG4706 Predicted 3-hydroxylac 52.4 78 0.0017 22.1 5.9 106 24-133 27-138 (161)
93 PF10648 Gmad2: Immunoglobulin 50.3 60 0.0013 20.3 4.9 46 91-138 3-49 (88)
94 PF01835 A2M_N: MG2 domain; I 47.3 67 0.0015 19.9 6.5 39 98-137 12-55 (99)
95 PF10989 DUF2808: Protein of u 47.1 90 0.002 21.3 7.4 41 86-126 88-130 (146)
96 PF12988 DUF3872: Domain of un 46.4 21 0.00046 24.4 2.4 21 94-114 41-61 (137)
97 PF11769 DUF3313: Protein of u 38.9 1.4E+02 0.0031 21.2 10.1 82 53-137 75-169 (201)
98 PF11684 DUF3280: Protein of u 37.5 1.3E+02 0.0029 20.5 5.8 42 98-139 78-119 (140)
99 PF11886 DUF3406: Domain of un 36.2 85 0.0018 24.1 4.5 128 2-137 116-250 (273)
100 PF11974 MG1: Alpha-2-macroglo 32.3 86 0.0019 19.8 3.6 34 102-136 14-48 (97)
101 KOG1206|consensus 27.2 52 0.0011 24.9 2.1 58 34-105 169-235 (272)
102 TIGR00074 hypC_hupF hydrogenas 27.2 1.5E+02 0.0033 18.0 3.9 25 83-107 22-46 (76)
103 smart00634 BID_1 Bacterial Ig- 26.6 77 0.0017 19.5 2.6 28 112-140 15-42 (92)
104 PF01336 tRNA_anti-codon: OB-f 23.4 1.3E+02 0.0028 17.1 3.0 24 92-115 40-63 (75)
105 PF04052 TolB_N: TolB amino-te 21.6 2.2E+02 0.0047 17.8 4.3 36 90-126 64-99 (105)
106 PF15490 Ten1_2: Telomere-capp 21.6 2.6E+02 0.0056 18.6 7.0 42 85-126 51-95 (118)
107 KOG4366|consensus 20.7 20 0.00043 26.0 -1.1 56 82-137 100-155 (213)
108 PF11355 DUF3157: Protein of u 20.6 3.5E+02 0.0076 19.8 7.2 50 88-138 99-151 (199)
109 PF14230 DUF4333: Domain of un 20.6 2.1E+02 0.0046 17.3 4.8 37 89-129 44-80 (80)
110 TIGR03786 strep_pil_rpt strept 20.5 2E+02 0.0042 16.8 4.4 23 114-136 30-52 (64)
111 TIGR00993 3a0901s04IAP86 chlor 20.1 1.7E+02 0.0037 25.9 4.0 131 1-137 595-730 (763)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.96 E-value=1.8e-27 Score=163.11 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=109.8
Q ss_pred cccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEe
Q psy7396 15 KDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYI 94 (145)
Q Consensus 15 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl 94 (145)
.|+.+++|+++.++++|++.+++++++.|+|+.|.+|||++++|+|.+++.+....... +...+|++++++|+
T Consensus 18 ~~~~~~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~-------~~~~vTiel~infl 90 (136)
T PRK10293 18 GNMVGLLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEG-------EQKVVGLEINANHV 90 (136)
T ss_pred ccHHHhcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccC-------CceEEEEEEEeEEe
Confidence 46778999999999999999999999999999999999999999999988877665432 46789999999999
Q ss_pred ecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 95 RGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 95 ~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
+|++.| .|++++++++.||+.++++++++|+ +|+++|.++++++++
T Consensus 91 ~p~~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 91 RSAREG-RVRGVCKPLHLGSRHQVWQIEIFDE-KGRLCCSSRLTTAIL 136 (136)
T ss_pred cccCCc-eEEEEEEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEEEC
Confidence 999988 6999999999999999999999998 999999999999874
No 2
>PRK10254 thioesterase; Provisional
Probab=99.96 E-value=5.7e-27 Score=160.64 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=111.7
Q ss_pred cccccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEE
Q psy7396 13 HLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHIT 92 (145)
Q Consensus 13 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~ 92 (145)
...++..++|+++.++++|++++++++++.++|+.|.+|||++++|+|.++++++....+. +...+|++++++
T Consensus 16 ~~~~~~~~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~-------g~~~vTiel~in 88 (137)
T PRK10254 16 SDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRD-------GQCVVGTELNAT 88 (137)
T ss_pred cccchHHhhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCC-------CCeEEEEEEEeE
Confidence 3456778999999999999999999999999999999999999999999999988765442 578899999999
Q ss_pred EeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 93 fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
|++|++.| .|++++++++.||+..+++++++++ +|+++|.++++..++
T Consensus 89 ~Lrp~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~-~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 89 HHRPVSEG-KVRGVCQPLHLGRQNQSWEIVVFDE-QGRRCCTCRLGTAVL 136 (137)
T ss_pred EeccCcCC-eEEEEEEEEecCcCEEEEEEEEEcC-CCCEEEEEEEEEEEe
Confidence 99999987 7999999999999999999999998 999999999999886
No 3
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.95 E-value=1.9e-26 Score=154.18 Aligned_cols=117 Identities=24% Similarity=0.359 Sum_probs=107.4
Q ss_pred ccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEee
Q psy7396 16 DLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIR 95 (145)
Q Consensus 16 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~ 95 (145)
|+.+.+|+++.+.+++++.+++++.|+++|+.|++|||++++++|.+++.++....++ +...+|++++++|++
T Consensus 1 p~~~~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~-------~~~~vt~~l~i~f~~ 73 (117)
T TIGR00369 1 PLVSFLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSG-------GQAVVGLELNANHLR 73 (117)
T ss_pred CcccccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCC-------CceEEEEEEEeeecc
Confidence 5677899999999999999999999999999999999999999999987766554432 567899999999999
Q ss_pred cCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 96 GAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 96 pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
|++.| .|++++++++.||+.++++++++++ +|+++|++++++++
T Consensus 74 p~~~g-~l~a~a~v~~~gr~~~~~~~~i~~~-~g~~va~~~~t~~~ 117 (117)
T TIGR00369 74 PAREG-KVRAIAQVVHLGRQTGVAEIEIVDE-QGRLCALSRGTTAV 117 (117)
T ss_pred ccCCC-EEEEEEEEEecCceEEEEEEEEECC-CCCEEEEEEEEEcC
Confidence 99999 8999999999999999999999998 99999999999874
No 4
>PLN02322 acyl-CoA thioesterase
Probab=99.94 E-value=9e-26 Score=156.98 Aligned_cols=122 Identities=15% Similarity=0.251 Sum_probs=108.3
Q ss_pred cccccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEE
Q psy7396 13 HLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHIT 92 (145)
Q Consensus 13 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~ 92 (145)
...|+...+|+++.++++|++++++++.+.|.|+.|.+|||++++|+|.+++++...... ....+|++++++
T Consensus 8 ~~dpf~~~LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~--------~~~~vTiel~in 79 (154)
T PLN02322 8 AIDPPLHMLGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASG--------FKRVAGIQLSIN 79 (154)
T ss_pred ccchHHHHCCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccC--------CCceEEEEEEEE
Confidence 346777899999999999999999999999999999999999999999998877654322 346799999999
Q ss_pred EeecCCCCCEEEEEEEEEecCceEEEEEEEEEEC----CC-CcEEEEEEEEEEEe
Q psy7396 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNK----ET-GALVATGVHTKYIA 142 (145)
Q Consensus 93 fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~----~~-g~~~a~a~~~~~v~ 142 (145)
|++|++.|+.|++++++++.||+..++++++++. ++ |+++|.+++|+.+.
T Consensus 80 fLrpa~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 80 HLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred EeccCCCCCEEEEEEEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 9999999999999999999999999999999983 12 79999999999664
No 5
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.94 E-value=4.7e-25 Score=146.89 Aligned_cols=113 Identities=25% Similarity=0.301 Sum_probs=103.6
Q ss_pred eecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCC
Q psy7396 19 SYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAK 98 (145)
Q Consensus 19 ~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~ 98 (145)
.++|+++.++++|++.++++++++|+|+.|++|||++++++|.+++.++... ....+|.+++++|++|++
T Consensus 2 ~~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~----------~~~~~t~~~~i~f~rp~~ 71 (114)
T TIGR02286 2 KALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY----------GDAAVAAQCTIDFLRPGR 71 (114)
T ss_pred cccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC----------CCceEEEEEEEEEecCCC
Confidence 3689999999999999999999999999999999999999999987665332 245689999999999999
Q ss_pred CCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 99 IGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 99 ~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
.|+.+.+++++.+.|++..+++++++++ +|+++|+++++++++
T Consensus 72 ~G~~l~~~a~v~~~g~~~~~~~~~i~~~-~~~~va~~~~t~~~~ 114 (114)
T TIGR02286 72 AGERLEAEAVEVSRGGRTGTYDVEVVNQ-EGELVALFRGTSRRL 114 (114)
T ss_pred CCCEEEEEEEEEEeCCcEEEEEEEEEcC-CCCEEEEEEEEEEEC
Confidence 9999999999999999999999999997 999999999999874
No 6
>PRK11688 hypothetical protein; Provisional
Probab=99.94 E-value=2.6e-25 Score=155.53 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=106.8
Q ss_pred cccceecceEEEEeeCCEEEEEEEeCCCCcC--ccCCchHHHHHHHHHHHhHHhhhhccccc-----ccc-ccccceeEE
Q psy7396 15 KDLFSYHQVNILSAADGKCVAEMKISQEHTN--TFGTLHGGMTATLVDYLSGCALLTHKNVM-----EES-SKISHSGVS 86 (145)
Q Consensus 15 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n--~~g~vhGG~l~~l~D~a~~~~~~~~~~~~-----~~~-~~~~~~~vt 86 (145)
.|+.+++|+++.++++|.+.+++++.++|+| +.|.+|||++++++|.++++++....... .+. .+.....+|
T Consensus 21 ~pf~~~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vT 100 (154)
T PRK11688 21 MPFNRLLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGT 100 (154)
T ss_pred CCHHHHhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceE
Confidence 4677789999999999999999999999995 68999999999999999999987643210 000 000235689
Q ss_pred EEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 87 ~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
++++++|++|++ |+.|++++++++.||+.++++++++++ +|+++|+++++|++
T Consensus 101 i~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~v 153 (154)
T PRK11688 101 IDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELHNE-QGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEEe
Confidence 999999999996 889999999999999999999999998 89999999999986
No 7
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1.6e-24 Score=149.45 Aligned_cols=122 Identities=28% Similarity=0.429 Sum_probs=112.3
Q ss_pred cccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEe
Q psy7396 15 KDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYI 94 (145)
Q Consensus 15 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl 94 (145)
.++...+|++++++.+|++.+++++.+++.|+.|++|||++++++|.+++.++...... ....+|++++++|+
T Consensus 18 ~~~~~~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~-------~~~~~ti~l~i~fl 90 (141)
T COG2050 18 SPFLKTLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGV-------VALAVTLELNINFL 90 (141)
T ss_pred cchhhhcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCc-------cceeEEEEEEehhc
Confidence 56677899999999999999999999999999999999999999999999999988763 35558999999999
Q ss_pred ecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 95 RGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 95 ~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
+|++.|+ ++++|++++.|++.++++++++++++++++|++++++++.++
T Consensus 91 r~~~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~ 139 (141)
T COG2050 91 RPVKEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRK 139 (141)
T ss_pred cCCCCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecC
Confidence 9999997 999999999999999999999976467999999999999875
No 8
>KOG3328|consensus
Probab=99.91 E-value=3.7e-23 Score=140.54 Aligned_cols=116 Identities=45% Similarity=0.744 Sum_probs=108.6
Q ss_pred cceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCC
Q psy7396 21 HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIG 100 (145)
Q Consensus 21 ~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g 100 (145)
.++++....+|++.++|++.+.++|..+++|||++++++|..+..++....+ ..+.++++|+++||+|++.|
T Consensus 27 ~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~--------~~~gvsvdLsvsyL~~AklG 98 (148)
T KOG3328|consen 27 NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSG--------FKPGVSVDLSVSYLSSAKLG 98 (148)
T ss_pred CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccC--------CCCceEEEEEhhhccccCCC
Confidence 6889999999999999999999999999999999999999998887666555 58999999999999999999
Q ss_pred CEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 101 EQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 101 ~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
+.|.+++++++.|+++++++++++...+|+++|+++++.++.+.
T Consensus 99 e~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~ 142 (148)
T KOG3328|consen 99 EELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPA 142 (148)
T ss_pred CeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEEeecC
Confidence 99999999999999999999999998789999999999998754
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.88 E-value=3e-21 Score=132.72 Aligned_cols=120 Identities=22% Similarity=0.177 Sum_probs=99.0
Q ss_pred cccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEe
Q psy7396 15 KDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYI 94 (145)
Q Consensus 15 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl 94 (145)
.|+...+|+++.+++++++.+++++.++ .|+.|++|||++++++|.++..++....... ..+...++.+++++|+
T Consensus 6 ip~~~~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~----~~~~~~vt~~~~i~yl 80 (138)
T TIGR02447 6 IPLSEAMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQEL----GIDGDIVIADSHIRYL 80 (138)
T ss_pred CCHHHHcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeeeEEc
Confidence 5778899999999999999999999997 8999999999999999977443332111100 0035789999999999
Q ss_pred ecCCCCCEEEEEEEE-------------EecCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 95 RGAKIGEQIVIESST-------------KKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 95 ~pv~~g~~l~~~~~~-------------~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
+|++.+ +.++|++ .+.||+.+++++++++ +|+++|+++++|++++
T Consensus 81 ~P~~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 81 APVTGD--PVANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVALP 138 (138)
T ss_pred CCcCCC--eEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEeC
Confidence 999843 7888777 6889999999999997 7899999999999864
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.88 E-value=7.9e-21 Score=125.33 Aligned_cols=111 Identities=30% Similarity=0.449 Sum_probs=102.2
Q ss_pred cceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCC
Q psy7396 21 HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIG 100 (145)
Q Consensus 21 ~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g 100 (145)
+++.+.+.+++.+.+++++.+.++|..|++|||++++++|.+++..+....++ +...++.+++++|++|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~-------~~~~~~~~~~i~f~~p~~~- 73 (113)
T cd03443 2 LGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPP-------GALAVTVDLNVNYLRPARG- 73 (113)
T ss_pred CcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCC-------CCceEEEEEEEeEEcCCCC-
Confidence 57788899999999999999999999999999999999999999888776532 5788999999999999999
Q ss_pred CEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEE
Q psy7396 101 EQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140 (145)
Q Consensus 101 ~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~ 140 (145)
+.+++++++.+.|+++++++++++++ +|+++++++++++
T Consensus 74 ~~v~~~~~v~~~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 74 GDLTARARVVKLGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred CeEEEEEEEEecCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 79999999999999999999999996 7999999999886
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.78 E-value=8e-18 Score=114.85 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=94.5
Q ss_pred cccccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEE
Q psy7396 13 HLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHIT 92 (145)
Q Consensus 13 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~ 92 (145)
...|++...|+++++++++++.++++..+...|+.|++|||++++++|.+++..+....+. ...++..+++++
T Consensus 11 ~~~P~~~~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~-------~~~~~~k~~~i~ 83 (132)
T PF14539_consen 11 NKVPFFGTAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGD-------KYRVWDKSAEID 83 (132)
T ss_dssp HCSHHHHCCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-T-------TEEEEEEEEEEE
T ss_pred hhcCccccceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCC-------cEEEEEEeeEEE
Confidence 3467788899999999999999999999999999999999999999999999988887764 567889999999
Q ss_pred EeecCCCCCEEEEEEEEEec---CceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 93 YIRGAKIGEQIVIESSTKKC---GKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 93 fl~pv~~g~~l~~~~~~~~~---gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
|++|.+ | .|++++++... .+....++++++|+ +|+.+|+++.+++|
T Consensus 84 f~kpa~-g-~v~a~~~~~~e~~~~~~~~~~~v~i~D~-~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 84 FLKPAR-G-DVTATAELTEEQIGERGELTVPVEITDA-DGEVVAEATITWYV 132 (132)
T ss_dssp E-S----S--EEEEEE-TCCHCCHEEEEEEEEEEEET-TC-EEEEEEEEEEE
T ss_pred EEeccC-C-cEEEEEEcCHHHhCCCcEEEEEEEEEEC-CCCEEEEEEEEEEC
Confidence 999987 6 49999998653 36788999999998 99999999999876
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.77 E-value=3.8e-17 Score=109.07 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=92.4
Q ss_pred eCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEeecCCCCCEEEEEE
Q psy7396 29 ADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIRGAKIGEQIVIES 107 (145)
Q Consensus 29 ~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~pv~~g~~l~~~~ 107 (145)
+++...+.+++.+.++|+.|++|||.+++++|.++..++.... ....++..+ +++|++|++.|+.|.+++
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~---------~~~~~~~~~~~~~f~~p~~~gd~l~i~~ 74 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA---------GGRVVTASVDRIDFLKPVRVGDVVELSA 74 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh---------CCcEEEEEECceEEcCccccCcEEEEEE
Confidence 4678899999999999999999999999999999887765443 245667788 799999999999999999
Q ss_pred EEEecCceEEEEEEEEEECC----CCcEEEEEEEEEEEec
Q psy7396 108 STKKCGKKLAFLDVLIKNKE----TGALVATGVHTKYIAG 143 (145)
Q Consensus 108 ~~~~~gr~~~~~~~~i~~~~----~g~~~a~a~~~~~v~~ 143 (145)
++.+.|++++.+++++++++ ++++++++..+++.+.
T Consensus 75 ~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 75 RVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 99999999999999999862 2478999999998864
No 13
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.74 E-value=1.6e-16 Score=108.51 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=91.3
Q ss_pred eCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEeecCCCCCEEEEEE
Q psy7396 29 ADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIRGAKIGEQIVIES 107 (145)
Q Consensus 29 ~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~pv~~g~~l~~~~ 107 (145)
.++...+.+.+.|+++|..|++|||.++.++|.+++.++.... +..++|+++ .++|++|++.||.+.+++
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~---------~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a 78 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIA---------HGRVVTVRVEGMTFLRPVAVGDVVCCYA 78 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHc---------CCceEEEEECceEECCCcccCcEEEEEE
Confidence 4567888899999999999999999999999999888887665 368899999 589999999999999999
Q ss_pred EEEecCceEEEEEEEEEECC-------CCcEEEEEEEEEEEec
Q psy7396 108 STKKCGKKLAFLDVLIKNKE-------TGALVATGVHTKYIAG 143 (145)
Q Consensus 108 ~~~~~gr~~~~~~~~i~~~~-------~g~~~a~a~~~~~v~~ 143 (145)
++++.|++++.++++++.+. +..+++++..+|+.++
T Consensus 79 ~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd 121 (133)
T PRK10694 79 RCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVD 121 (133)
T ss_pred EEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEEC
Confidence 99999999999999998521 1245678888887764
No 14
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.72 E-value=6.4e-16 Score=107.39 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=92.2
Q ss_pred CCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEE-EEEeecCCCCCEEEEEEE
Q psy7396 30 DGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH-ITYIRGAKIGEQIVIESS 108 (145)
Q Consensus 30 ~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~-i~fl~pv~~g~~l~~~~~ 108 (145)
.+...++.-+.|.+.|+.|.+|||.+++++|.++.+++..+.+ ..++|++++ ++|.+|++.||.|.++++
T Consensus 11 ~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~---------~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 11 EGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAG---------GRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred CceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhC---------CeEEEEEeceEEEccccccCcEEEEEEE
Confidence 5677788999999999999999999999999999999988874 699999995 999999999999999999
Q ss_pred EEecCceEEEEEEEEEECC----CCcEEEEEEEEEEEec
Q psy7396 109 TKKCGKKLAFLDVLIKNKE----TGALVATGVHTKYIAG 143 (145)
Q Consensus 109 ~~~~gr~~~~~~~~i~~~~----~g~~~a~a~~~~~v~~ 143 (145)
+.+.||++..+.+++|.++ .....+.+..+|+-++
T Consensus 82 v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd 120 (157)
T COG1607 82 VVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVD 120 (157)
T ss_pred EeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEEC
Confidence 9999999999999999762 2344566777776654
No 15
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.70 E-value=5e-16 Score=95.99 Aligned_cols=79 Identities=28% Similarity=0.474 Sum_probs=71.8
Q ss_pred cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEEC
Q psy7396 47 FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNK 126 (145)
Q Consensus 47 ~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~ 126 (145)
+|++|||.+++++|.++..++...... ....++.+++++|++|++.||.+++++++.+.|+++++++++++++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~-------~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~ 73 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGD-------GRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSE 73 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSS-------TEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEET
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccC-------CcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEEC
Confidence 589999999999999999999888762 3688999999999999999999999999999999999999999998
Q ss_pred CCCcEEE
Q psy7396 127 ETGALVA 133 (145)
Q Consensus 127 ~~g~~~a 133 (145)
+++++|
T Consensus 74 -~~~~~~ 79 (79)
T PF03061_consen 74 -DGRLCA 79 (79)
T ss_dssp -TSCEEE
T ss_pred -CCcEEC
Confidence 887775
No 16
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=99.61 E-value=4.1e-14 Score=97.39 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=86.2
Q ss_pred ccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEee
Q psy7396 16 DLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIR 95 (145)
Q Consensus 16 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~ 95 (145)
|....||+++.+++++.+.+..|..|+ .|..|+++||.+++++-.+ ||++...... +.+. ....|..+-+++|++
T Consensus 13 Pls~~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLa-GW~lv~l~l~-e~~~--~~~IVi~~~~i~Y~~ 87 (144)
T PF09500_consen 13 PLSKAMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLA-GWGLVWLQLK-EAGL--NGDIVIADSNIRYLK 87 (144)
T ss_dssp HHHHHTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHH-HHHHHHHHHH-HHT-----EEEEEEEEEEE-S
T ss_pred ChhhhcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHH-HHHHHHHHHH-HhCC--CCcEEEEeCceEEcC
Confidence 566789999999999999999999998 9999999999999999988 6655443221 1111 368889999999999
Q ss_pred cCCCCCEEEEEEEEE-------------ecCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 96 GAKIGEQIVIESSTK-------------KCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 96 pv~~g~~l~~~~~~~-------------~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
|+. ++ ++++|++- +.||.++.+++++++ +|+.+++.++.|+++|
T Consensus 88 Pv~-~d-~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~lk 144 (144)
T PF09500_consen 88 PVT-GD-FTARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVALK 144 (144)
T ss_dssp ----S---EEEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE-
T ss_pred CCC-CC-cEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEEC
Confidence 998 53 88888885 578889999999999 8999999999999875
No 17
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.59 E-value=2.1e-14 Score=92.45 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=76.7
Q ss_pred cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEEC
Q psy7396 47 FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNK 126 (145)
Q Consensus 47 ~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~ 126 (145)
.+.+|||++++++|.++..++....+ .....|.+++++|++|...++++.+++++++.|++.++.+++++++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~--------~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 85 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHG--------ASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR 85 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccC--------CCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC
Confidence 68999999999999998877765432 3567899999999999999999999999999999999999999997
Q ss_pred CCCcEEEEEEEEEE
Q psy7396 127 ETGALVATGVHTKY 140 (145)
Q Consensus 127 ~~g~~~a~a~~~~~ 140 (145)
+|+++|++..++.
T Consensus 86 -~G~lva~~~~~~~ 98 (99)
T cd00556 86 -DGKLVASATQSFL 98 (99)
T ss_pred -CCcEEEEEEEeEc
Confidence 8999999998875
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.58 E-value=1.6e-13 Score=88.64 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=90.8
Q ss_pred EEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCc
Q psy7396 35 AEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGK 114 (145)
Q Consensus 35 ~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr 114 (145)
..+++.+.++|..|.+|+|.++.++|++....+.........-...+...++.+++++|++|++.|+.|++++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 46789999999999999999999999998877766543211001125678899999999999999999999999999999
Q ss_pred eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 115 KLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 115 ~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
+.+.++.+++++ +|+++|++...+..+
T Consensus 83 ~~~~~~~~~~~~-~g~~~a~~~~~~~~~ 109 (110)
T cd00586 83 KSFTFEQEIFRE-DGELLATAETVLVCV 109 (110)
T ss_pred EEEEEEEEEECC-CCeEEEEEEEEEEEe
Confidence 999999999996 799999999988765
No 19
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.54 E-value=1.1e-12 Score=94.23 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=90.2
Q ss_pred EEEEeeCC-EEEEEEEeCCCCc-CccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCC
Q psy7396 24 NILSAADG-KCVAEMKISQEHT-NTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGE 101 (145)
Q Consensus 24 ~v~~~~~~-~~~~~~~~~~~~~-n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~ 101 (145)
++.++.+| .+...+.++.++. |..+++|||.+++++|.++... . + +...++...+++|++|+.+||
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~-~--------~~~~~~~i~~irF~kPV~pGD 143 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I-D--------AELALTGVANIRFKRPVKLGE 143 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c-C--------CcEEEEEeeeEEEccCCCCCC
Confidence 57778888 6889999999988 9999999999999999863321 1 2 356778888999999999999
Q ss_pred EEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 102 QIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 102 ~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
+|.+++++.+.+++...++++++. +|+++++|..+++.
T Consensus 144 ~L~~ea~v~~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 144 RVVAKAEVVRKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred EEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999999999999999999997 89999999999876
No 20
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.45 E-value=8.4e-12 Score=84.52 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=93.1
Q ss_pred EEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecC
Q psy7396 34 VAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCG 113 (145)
Q Consensus 34 ~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~g 113 (145)
..+.++.+..+|..|++|-+.+..+++.+.............+..+.+...+.++.+++|++|+..||+|.+++++.+.|
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~ 83 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMR 83 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeC
Confidence 45778899999999999999999999999777665544322222223567889999999999999999999999999999
Q ss_pred ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 114 KKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 114 r~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
++++.+..+++++ +|++++++..+++.++.
T Consensus 84 ~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d~ 113 (130)
T PRK10800 84 GTSLTFTQRIVNA-EGTLLNEAEVLIVCVDP 113 (130)
T ss_pred cEEEEEEEEEEcC-CCeEEEEEEEEEEEEEC
Confidence 9999999999987 89999999999988753
No 21
>PLN02647 acyl-CoA thioesterase
Probab=99.41 E-value=5.6e-12 Score=100.74 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=93.3
Q ss_pred EEEeeCCEEEEEEEeCC------CCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEE-EEEeecC
Q psy7396 25 ILSAADGKCVAEMKISQ------EHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH-ITYIRGA 97 (145)
Q Consensus 25 v~~~~~~~~~~~~~~~~------~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~-i~fl~pv 97 (145)
.....+....+..++.+ .+.|+.|.+|||.|+.++|.++++++..+.... ++......+||++++ ++|++|+
T Consensus 80 ~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~-~~~~~p~~vVTAsVD~i~F~~Pi 158 (437)
T PLN02647 80 TKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDD-DSTTRPLLLVTASVDKIVLKKPI 158 (437)
T ss_pred ccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCC-cccCCcceEEEEEECcEEEcCCC
Confidence 34455667777885544 459999999999999999999999998876520 000001279999995 9999999
Q ss_pred CCCCEEEEEEEEEecCceEEEEEEEEEECC------CCcEEEEEEEEEEEec
Q psy7396 98 KIGEQIVIESSTKKCGKKLAFLDVLIKNKE------TGALVATGVHTKYIAG 143 (145)
Q Consensus 98 ~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~------~g~~~a~a~~~~~v~~ 143 (145)
+.|+.|.+++++...|+++..+.++++.+. +..+++++..+|+-++
T Consensus 159 ~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D 210 (437)
T PLN02647 159 RVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARD 210 (437)
T ss_pred cCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEc
Confidence 999999999999999999999999999752 2246888888887765
No 22
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.40 E-value=1.8e-11 Score=82.06 Aligned_cols=108 Identities=7% Similarity=0.041 Sum_probs=91.0
Q ss_pred EEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhcccccccc-ccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecC
Q psy7396 35 AEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEES-SKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCG 113 (145)
Q Consensus 35 ~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~-~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~g 113 (145)
..+++.+..+|..|+++.+.+..+++.+....+........+. .+.+...+.++++++|++|++.||.|.+++++.+.|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 4678899999999999999999999999776666544332222 123567789999999999999999999999999999
Q ss_pred ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 114 KKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 114 r~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
++++.++.++++ +|+++|++..+++.++.
T Consensus 83 ~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 83 GASLVFAQEVRR--GDTLLCEATVEVACVDA 111 (126)
T ss_pred ceEEEEEEEEEe--CCEEEEEEEEEEEEEEC
Confidence 999999999996 88999999998887743
No 23
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.35 E-value=4.3e-12 Score=97.56 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=98.2
Q ss_pred eecccccccccccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhcccccccccccccee
Q psy7396 5 ALGKTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84 (145)
Q Consensus 5 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~ 84 (145)
|+|.++.+++...+... .++ -...+++.|.|.|+.|+++.|++..++..+....+.... ....
T Consensus 313 qvget~~d~I~~~l~e~------~~~--~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~---------~~ni 375 (432)
T COG4109 313 QVGETISDQIANNLSEK------GDE--YGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKK---------KRNI 375 (432)
T ss_pred cccccHHHHHHhhhhhh------ccc--cceEEEechhhccccccchHHHHHHHHHHHHHHHHHHhc---------CCce
Confidence 35777777775433311 122 223389999999999999999999999999777776665 4788
Q ss_pred EEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 85 vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
+.-++++.|++|++.++.++++.|++..||+...++++++. +|.++|+|..+..+.
T Consensus 376 iIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~ql~ 431 (432)
T COG4109 376 IIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTVQLN 431 (432)
T ss_pred EEEeeeeeeecceecccEEEEeeeeeccccccceeEEEEee--Ccchhhhheeeeecc
Confidence 89999999999999999999999999999999999999999 888899998877654
No 24
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.35 E-value=7.3e-11 Score=80.99 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=93.3
Q ss_pred EEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEe
Q psy7396 32 KCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKK 111 (145)
Q Consensus 32 ~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~ 111 (145)
.....+++...++|..|++|-+.+..+++.+-.-.+........+..+.+...++++++++|++|++.||.+.+++++.+
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~ 84 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEE 84 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEe
Confidence 35678899999999999999999999999997766666333221111113678899999999999999999999999999
Q ss_pred cCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 112 CGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 112 ~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
.|+.+..+..+++++ ++++++|+.+.+.+++
T Consensus 85 ~~~~s~~~~~~i~~~--~~l~a~~~~~~V~v~~ 115 (137)
T COG0824 85 LGGKSLTLGYEIVNE--DELLATGETTLVCVDL 115 (137)
T ss_pred ecCeEEEEEEEEEeC--CEEEEEEEEEEEEEEC
Confidence 999999999999995 4999999999998864
No 25
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.34 E-value=1.7e-10 Score=70.88 Aligned_cols=97 Identities=24% Similarity=0.436 Sum_probs=85.0
Q ss_pred EEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCc
Q psy7396 35 AEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGK 114 (145)
Q Consensus 35 ~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr 114 (145)
..+.+.+.+.|..+.+||+.+..++|.+....+...... ....+..+++++|++|++.|+.+.++.++.+.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 75 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGR-------GLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGR 75 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccC-------CCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccc
Confidence 467788888899999999999999999988777655421 4678899999999999999999999999999999
Q ss_pred eEEEEEEEEEECCCCcEEEEEEEEE
Q psy7396 115 KLAFLDVLIKNKETGALVATGVHTK 139 (145)
Q Consensus 115 ~~~~~~~~i~~~~~g~~~a~a~~~~ 139 (145)
+...+++.++++ +|++++.+..++
T Consensus 76 ~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 76 SSVTVEVEVRNE-DGKLVATATATF 99 (100)
T ss_pred cEEEEEEEEECC-CCCEEEEEEEEe
Confidence 999999999996 799999987654
No 26
>PLN02647 acyl-CoA thioesterase
Probab=99.32 E-value=7.8e-11 Score=94.23 Aligned_cols=107 Identities=12% Similarity=0.146 Sum_probs=86.6
Q ss_pred eeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEE-EEEeecCCCCCEEEEE
Q psy7396 28 AADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH-ITYIRGAKIGEQIVIE 106 (145)
Q Consensus 28 ~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~-i~fl~pv~~g~~l~~~ 106 (145)
.++..+....-+.|.+.|.+|.+|||.++.++|++++.++..+.+ ..++|++++ ++|++|++.|+.|.++
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~---------~~~vt~svd~v~F~~PV~vGdil~l~ 356 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG---------LRPYFLEVDHVDFLRPVDVGDFLRFK 356 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC---------CceEEEEecceEecCccccCcEEEEE
Confidence 345567788889999999999999999999999999988887763 689999995 9999999999999999
Q ss_pred EEEEecCc-----eEEEEEEEEE--EC--CCCcEEEEEEEEEEEec
Q psy7396 107 SSTKKCGK-----KLAFLDVLIK--NK--ETGALVATGVHTKYIAG 143 (145)
Q Consensus 107 ~~~~~~gr-----~~~~~~~~i~--~~--~~g~~~a~a~~~~~v~~ 143 (145)
++++..|. +++.+++.++ +. .+++++.++..||+..+
T Consensus 357 A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d 402 (437)
T PLN02647 357 SCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRP 402 (437)
T ss_pred EEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEec
Confidence 98887664 4456665554 43 24567778888887764
No 27
>KOG4781|consensus
Probab=99.30 E-value=1.9e-11 Score=88.95 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=84.4
Q ss_pred EeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEE
Q psy7396 27 SAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106 (145)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~ 106 (145)
+.+..+.++-+......+++.|.+|||+|++++|++..++.+...+ ....+|++++++|.+|++....+.++
T Consensus 121 d~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~p--------nk~~vTanLsisy~~pip~~~f~vi~ 192 (237)
T KOG4781|consen 121 DPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALP--------NKIGVTANLSISYKRPIPTNHFVVIR 192 (237)
T ss_pred ecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCC--------chhheeeecccccCCCcccceEEEEe
Confidence 3455688999999999999999999999999999999999988876 57889999999999999999999999
Q ss_pred EEEEecCceEEEEEEEEEEC
Q psy7396 107 SSTKKCGKKLAFLDVLIKNK 126 (145)
Q Consensus 107 ~~~~~~gr~~~~~~~~i~~~ 126 (145)
+.+.+..++++.+.+++.+.
T Consensus 193 t~~~~~~Grk~~~~g~l~~~ 212 (237)
T KOG4781|consen 193 TQLDKVEGRKCKTFGELNVQ 212 (237)
T ss_pred cchhhhcCcccceeeEEEEe
Confidence 99999999999999988875
No 28
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.30 E-value=1.4e-10 Score=76.45 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=83.0
Q ss_pred EEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceE
Q psy7396 37 MKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKL 116 (145)
Q Consensus 37 ~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~ 116 (145)
+++.+..+|..|.+|.+.++.+++.+....+...........+.+...++++++++|++|++.||.|.+++++.+.|+++
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 56788899999999999999999999776655433211111122567789999999999999999999999999999999
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 117 AFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 117 ~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
+.++.+++++ ++.+++.+..+.+.+
T Consensus 82 ~~~~~~i~~~-~~~~~~~~~~~~v~~ 106 (117)
T TIGR00051 82 FVFSQEIFNE-DEALLKAATVIVVCV 106 (117)
T ss_pred EEEEEEEEeC-CCcEEEeeEEEEEEE
Confidence 9999999997 677666665544343
No 29
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.18 E-value=1.9e-09 Score=71.73 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=77.1
Q ss_pred eCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEE
Q psy7396 39 ISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAF 118 (145)
Q Consensus 39 ~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~ 118 (145)
+.+..+| .|++|.+.+..++|.+-...+..... .....+.+...+.++.+++|++|++.||.+++.+++.+.|++++.
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~-~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~ 78 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGL-YDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFR 78 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTS-CHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcch-hhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEE
Confidence 4567799 99999999999999986655542221 111112256888999999999999999999999999999999999
Q ss_pred EEEEEEECCCC--cEEEEEEEEEEEecC
Q psy7396 119 LDVLIKNKETG--ALVATGVHTKYIAGY 144 (145)
Q Consensus 119 ~~~~i~~~~~g--~~~a~a~~~~~v~~~ 144 (145)
++.++++..+| +++|++..+.+....
T Consensus 79 ~~~~i~~~~~g~~~~~a~~~~~~v~~d~ 106 (121)
T PF13279_consen 79 FEQEIFRPADGKGELAATGRTVMVFVDY 106 (121)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEEEEEET
T ss_pred EEEEEEEcCCCceEEEEEEEEEEEEEeC
Confidence 99999994345 459999998887753
No 30
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.10 E-value=3.4e-09 Score=86.56 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=94.7
Q ss_pred eCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEE
Q psy7396 29 ADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESS 108 (145)
Q Consensus 29 ~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~ 108 (145)
+....+.++++.+.++|..|+++-+.++.++|.+....+......... ...+..++.++.+++|++|++.||.+.++++
T Consensus 342 ~~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~-~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~ 420 (495)
T PRK07531 342 SQPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAY-VAAGHSYYTVETHIRHLGEAKAGQALHVETQ 420 (495)
T ss_pred CCceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHH-HhcCCcEEEEEEEEEEcccCCCCCEEEEEEE
Confidence 334567899999999999999999999999999977666554332211 1114566789999999999999999999999
Q ss_pred EEecCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 109 TKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 109 ~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
+.+.+++++.++.+++++ +|+++|++..+++.++
T Consensus 421 v~~~~~~s~~~~~~i~~~-~g~l~A~g~~~~v~vD 454 (495)
T PRK07531 421 LLSGDEKRLHLFHTLYDA-GGELIATAEHMLLHVD 454 (495)
T ss_pred EEecCCcEEEEEEEEECC-CCcEEEEEEEEEEEEE
Confidence 999999999999999986 8999999999988875
No 31
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.04 E-value=7.2e-09 Score=66.66 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=68.3
Q ss_pred ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEE
Q psy7396 46 TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKN 125 (145)
Q Consensus 46 ~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~ 125 (145)
+.+.+|||.+++++..++...+. ......+++.+|++|+..+..+.++++.++.||+..+.++++++
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~~-------------~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q 80 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTVP-------------DDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ 80 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhCC-------------CCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE
Confidence 47799999999999887554332 22347799999999999877899999999999999999999999
Q ss_pred CCCCcEEEEEEEEEE
Q psy7396 126 KETGALVATGVHTKY 140 (145)
Q Consensus 126 ~~~g~~~a~a~~~~~ 140 (145)
+|+++..++++|.
T Consensus 81 --~g~~~~~a~~sf~ 93 (94)
T cd03445 81 --NGKVIFTATASFQ 93 (94)
T ss_pred --CCEEEEEEEEEEe
Confidence 8999999988874
No 32
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=99.01 E-value=1.2e-08 Score=76.29 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=64.8
Q ss_pred cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEEC
Q psy7396 47 FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNK 126 (145)
Q Consensus 47 ~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~ 126 (145)
.+.+|||++++++-.++.... . .......+++++|++|++.| .++++++.++.||+..++++++++
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~----~--------~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q- 74 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA----P--------PPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ- 74 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH----T--------TTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE-
T ss_pred CCcChhHHHHHHHHHHHHHhc----c--------CCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE-
Confidence 568999988877776543333 1 12368899999999999999 999999999999999999999999
Q ss_pred CCCcEEEEEEEEEEEec
Q psy7396 127 ETGALVATGVHTKYIAG 143 (145)
Q Consensus 127 ~~g~~~a~a~~~~~v~~ 143 (145)
+|+++++++++|...+
T Consensus 75 -~~~~~~~a~~~f~~~~ 90 (255)
T PF13622_consen 75 -DGKVVATATASFGRPE 90 (255)
T ss_dssp -TTEEEEEEEEEEE--T
T ss_pred -CCcCEEEEEEEEccCc
Confidence 8999999999987654
No 33
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.94 E-value=3.5e-08 Score=66.09 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=65.5
Q ss_pred CCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCc--eEEEEEEEEEE
Q psy7396 48 GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGK--KLAFLDVLIKN 125 (145)
Q Consensus 48 g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr--~~~~~~~~i~~ 125 (145)
-.+||..++++++..+.. ..+ +...+....+++|++|+.+||+|++++++.+... +.+.+++++++
T Consensus 46 ~i~~g~~~~~~~~~~~~~----~~~--------g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~ 113 (128)
T cd03449 46 RIAHGMLTASLISAVLGT----LLP--------GPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTN 113 (128)
T ss_pred ceecHHHHHHHHHHHHhc----cCC--------CceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEe
Confidence 489999999998764321 111 2345667889999999999999999999987765 78999999999
Q ss_pred CCCCcEEEEEEEEEEE
Q psy7396 126 KETGALVATGVHTKYI 141 (145)
Q Consensus 126 ~~~g~~~a~a~~~~~v 141 (145)
+ +|+++++++.+.++
T Consensus 114 ~-~g~~v~~g~~~~~~ 128 (128)
T cd03449 114 Q-NGEVVIEGEAVVLA 128 (128)
T ss_pred C-CCCEEEEEEEEEeC
Confidence 7 89999999988763
No 34
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.80 E-value=1.6e-06 Score=58.25 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=81.2
Q ss_pred EEEEeeC-CEEEEEEEeCCCC--c-Ccc---CCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEE-EEEEEee
Q psy7396 24 NILSAAD-GKCVAEMKISQEH--T-NTF---GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVD-LHITYIR 95 (145)
Q Consensus 24 ~v~~~~~-~~~~~~~~~~~~~--~-n~~---g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~-l~i~fl~ 95 (145)
++.++++ +.+.....++++. . ++. ..++|-.+..++..+++......... ..+...+... -++.|++
T Consensus 12 ~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~-----~~~~~~~l~~~~~~kf~~ 86 (131)
T cd01288 12 RVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLED-----FEGKLVYFAGIDKARFRK 86 (131)
T ss_pred EEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccc-----cCCcEEEEeeecccEEcc
Confidence 3555564 5677777777653 2 322 67888888888887766654332110 0023444444 5799999
Q ss_pred cCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 96 GAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 96 pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
|+.+|+++++++++.+.+++...++++++. +|+++++++.+++.
T Consensus 87 pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~--~g~~v~~~~~~~~~ 130 (131)
T cd01288 87 PVVPGDQLILEVELLKLRRGIGKFKGKAYV--DGKLVAEAELMFAI 130 (131)
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999999999999999999999999987 89999999999875
No 35
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.79 E-value=2.5e-06 Score=58.88 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=80.5
Q ss_pred EEEEeeC-CEEEEEEEeCCCC--cC----ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEee
Q psy7396 24 NILSAAD-GKCVAEMKISQEH--TN----TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIR 95 (145)
Q Consensus 24 ~v~~~~~-~~~~~~~~~~~~~--~n----~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~ 95 (145)
++.++++ +.+.....++++. .. ....++|-.+..++..++++....... ..+...+...+ +++|++
T Consensus 27 ~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~------~~~~~~~l~gi~~~kF~~ 100 (147)
T PRK00006 27 RVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEE------NKGKLVYFAGIDKARFKR 100 (147)
T ss_pred EEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcC------cCCcEEEEeeeeEEEEcc
Confidence 4555654 5677777777653 22 234678877766666665553322211 01234444554 799999
Q ss_pred cCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 96 GAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 96 pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
|+.+||++++++++.+.+++.+.++++++. +|+++++++.++++.+
T Consensus 101 pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~--~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 101 PVVPGDQLILEVELLKQRRGIWKFKGVATV--DGKLVAEAELMFAIRD 146 (147)
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEEEc
Confidence 999999999999999999999999999987 8999999999998754
No 36
>COG5496 Predicted thioesterase [General function prediction only]
Probab=98.70 E-value=2.4e-06 Score=57.00 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=86.2
Q ss_pred EEEEEeCCCCcCc-------cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEE
Q psy7396 34 VAEMKISQEHTNT-------FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106 (145)
Q Consensus 34 ~~~~~~~~~~~n~-------~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~ 106 (145)
..++.+.++++.+ ...+--+.+..+++.++...+....+. +...+..+.+++.++|+++|.++.+.
T Consensus 8 e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~~Ld~-------g~ttVG~ev~vrHla~~~~G~~V~i~ 80 (130)
T COG5496 8 EGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQPYLDN-------GETTVGTEVLVRHLAATPPGLTVTIG 80 (130)
T ss_pred EEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHhhCcC-------CcceeeEEEEeeeccCCCCCCeEEEE
Confidence 4455555555542 345677889999999988888877764 67888999999999999999999999
Q ss_pred EEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 107 SSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 107 ~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
+++.+..++..++..+..+ +|+.+.++.++-+++++
T Consensus 81 ~~l~~v~Gr~v~f~i~a~~--~~~~Ig~g~h~R~iv~~ 116 (130)
T COG5496 81 ARLEKVEGRKVKFRIIAME--GGDKIGEGTHTRVIVPR 116 (130)
T ss_pred EEEEEEeccEEEEEEEEee--CCcEEeeeEEEEEEecH
Confidence 9999999999999999996 99999999999999864
No 37
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.54 E-value=8e-07 Score=67.18 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECC
Q psy7396 48 GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKE 127 (145)
Q Consensus 48 g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~ 127 (145)
+.++||.+++.+=.++...+. ......+++++|++|+..+..++++++.++.||+..+.++++++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv~-------------~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q-- 85 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTVP-------------EEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ-- 85 (271)
T ss_pred CceEccHHHHHHHHHHHhcCC-------------CCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--
Confidence 589999999998877555442 12234589999999999988999999999999999999999999
Q ss_pred CCcEEEEEEEEEE
Q psy7396 128 TGALVATGVHTKY 140 (145)
Q Consensus 128 ~g~~~a~a~~~~~ 140 (145)
+|+++.+++++|.
T Consensus 86 ~g~~~~~a~asf~ 98 (271)
T TIGR00189 86 HGKTIFTLQASFQ 98 (271)
T ss_pred CCEEEEEEEEEcc
Confidence 8999999999886
No 38
>PLN02370 acyl-ACP thioesterase
Probab=98.46 E-value=1.4e-05 Score=63.96 Aligned_cols=111 Identities=14% Similarity=0.031 Sum_probs=93.1
Q ss_pred EEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccc------cccccccccceeEEEEEEEEEeecCCCCCEEEEE
Q psy7396 33 CVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKN------VMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106 (145)
Q Consensus 33 ~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~------~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~ 106 (145)
..-.+.++...++..|.+.=..|+.++-+++......... ...+-.+.+..++..+++|+|.+++..||+|++.
T Consensus 140 y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~ 219 (419)
T PLN02370 140 FRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVD 219 (419)
T ss_pred EEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEE
Confidence 4667889999999999999999999999988877654331 1111122367899999999999999999999999
Q ss_pred EEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 107 SSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 107 ~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
+.+.+.++..+.-+.+++++.+|+++++|..+++++.
T Consensus 220 Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 220 TWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMN 256 (419)
T ss_pred EEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence 9999999999999999998657999999999998875
No 39
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.45 E-value=6.2e-06 Score=55.18 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=59.5
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCce-EEEEEEEEEECC
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKK-LAFLDVLIKNKE 127 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~-~~~~~~~i~~~~ 127 (145)
.+||..+++++...... ... ......+++++|++|+.+||+|++.+++....++ .+.+++++.++
T Consensus 45 ia~G~~~~~~~~~~~~~----~~~---------~~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq- 110 (123)
T cd03455 45 YVNGPTLAGLVIRYVTD----WAG---------PDARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNS- 110 (123)
T ss_pred EEEHHHHHHHHHHHHHH----ccC---------CcceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcC-
Confidence 59999999998865322 111 1234457899999999999999999999865433 78889999998
Q ss_pred CCcEEEEEEEEE
Q psy7396 128 TGALVATGVHTK 139 (145)
Q Consensus 128 ~g~~~a~a~~~~ 139 (145)
+|+++.+++++.
T Consensus 111 ~G~~v~~g~a~v 122 (123)
T cd03455 111 EGDHVMAGTATV 122 (123)
T ss_pred CCCEEEeEEEEE
Confidence 999999988764
No 40
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.42 E-value=3.9e-06 Score=57.54 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=48.9
Q ss_pred EEEEEeecCCCCCEEEEEEEEEecC-------ceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q psy7396 89 LHITYIRGAKIGEQIVIESSTKKCG-------KKLAFLDVLIKNKETGALVATGVHTKYIAGYS 145 (145)
Q Consensus 89 l~i~fl~pv~~g~~l~~~~~~~~~g-------r~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~~ 145 (145)
.+++|++|+.+||+|++++++.+.- ...+.+++++.++ +|+++++++.+.++.+++
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~~~~~~ 146 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ-DGEPVLSFERTALVPKRG 146 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC-CCCEEEEEEehhEEEcCC
Confidence 3899999999999999999998643 2588999999987 999999999999988763
No 41
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=98.40 E-value=8.8e-05 Score=50.81 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=79.5
Q ss_pred EEEEeeCCEEEEEEEeCCCC--cC-ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEeecCCC
Q psy7396 24 NILSAADGKCVAEMKISQEH--TN-TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIRGAKI 99 (145)
Q Consensus 24 ~v~~~~~~~~~~~~~~~~~~--~n-~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~pv~~ 99 (145)
++.+++++.++....++.+. .. ..+.+-|=.+...+=.+++........ ...+++...+...+ +++|.+|+.+
T Consensus 18 ~v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~---~~~~~~~~g~l~~i~~~~f~~~v~p 94 (138)
T cd01289 18 RVISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLAR---QQGNPPRPGFLLGSRKYEAHVDRFD 94 (138)
T ss_pred EEEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHH---hcCCCCCcEEEEEEEEEEEEcceeC
Confidence 45566777777777777543 22 235666666666666655444321110 00112456666776 6999999766
Q ss_pred -CCEEEEEEEEEecCc-eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 100 -GEQIVIESSTKKCGK-KLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 100 -g~~l~~~~~~~~~gr-~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
||+++++++..+..+ +...++++++. +|+++|+|+.+.+.+
T Consensus 95 ~Gd~l~i~~~~~~~~~~~~~~~~~~~~v--~~~~va~a~l~~~~p 137 (138)
T cd01289 95 LGSTLLIVVAELLQGDSGLGVFECTIED--QGGVLASGRLNVYQP 137 (138)
T ss_pred CCCeeEEEeeeeeeCCCcEEEEEEEEEE--CCEEEEEEEEEEEcC
Confidence 999999999998885 99999999998 899999999988865
No 42
>KOG2763|consensus
Probab=98.38 E-value=4e-06 Score=65.35 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred EeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEE-EEEeecCCCCCEEEE
Q psy7396 27 SAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH-ITYIRGAKIGEQIVI 105 (145)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~-i~fl~pv~~g~~l~~ 105 (145)
...+..+...--..|.+.|..|.+|||.++-++++.+...+..... ..+.+.+++ |+|.+|+..|..|.+
T Consensus 194 ~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~---------~~p~~rsVD~i~F~~pVdvG~~L~f 264 (357)
T KOG2763|consen 194 WMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCK---------GRPATRSVDDIEFQKPVDVGCVLTF 264 (357)
T ss_pred EeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcC---------CCceEEEechhhccCcceeeeEEEE
Confidence 3455566677778899999999999999999999999988888774 566888886 999999999999999
Q ss_pred EEEEEecCceEEEEEEEEEEC
Q psy7396 106 ESSTKKCGKKLAFLDVLIKNK 126 (145)
Q Consensus 106 ~~~~~~~gr~~~~~~~~i~~~ 126 (145)
.+.+.....+...++++..+.
T Consensus 265 ~s~V~yT~~k~~~vqv~~~~~ 285 (357)
T KOG2763|consen 265 SSFVTYTDNKSIYVQVKAVAS 285 (357)
T ss_pred eeEEEEecCCceeEEEEEecc
Confidence 999999888867777766553
No 43
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.37 E-value=1.3e-05 Score=53.26 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=62.8
Q ss_pred cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCc----eEEEEEEE
Q psy7396 47 FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGK----KLAFLDVL 122 (145)
Q Consensus 47 ~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr----~~~~~~~~ 122 (145)
.-.+||..+++++.......+.. +........+++|.+|+.+||+|++++++..... ..+.++.+
T Consensus 42 ~~i~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~ 110 (127)
T cd03441 42 GRIAHGMLTLSLASGLLVQWLPG-----------TDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTE 110 (127)
T ss_pred CceechHHHHHHHHhhhhhhccC-----------cccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEE
Confidence 34899999999988764332211 1355677899999999999999999999987643 58899999
Q ss_pred EEECCCCcEEEEEEEE
Q psy7396 123 IKNKETGALVATGVHT 138 (145)
Q Consensus 123 i~~~~~g~~~a~a~~~ 138 (145)
+.++ +|+++..+...
T Consensus 111 ~~n~-~g~~v~~g~~~ 125 (127)
T cd03441 111 ARNQ-GGEVVLSGEAT 125 (127)
T ss_pred EEeC-CCCEEEEEEEE
Confidence 9998 88988887654
No 44
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.34 E-value=2.5e-05 Score=52.78 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=61.3
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCC
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKET 128 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~ 128 (145)
.+||-..++++..+... .... +......+++++|++|+.+||+|+++.++.+.......+++++.++ +
T Consensus 44 iahG~l~~~~~~~~~~~---~~~~--------~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq-~ 111 (126)
T cd03447 44 ITHGMYTSAAVRALVET---WAAD--------NDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNE-E 111 (126)
T ss_pred eechhHHHHHHHHHHHH---hccC--------CCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEEC-C
Confidence 69999988888654322 1111 1334556689999999999999999999998777788999999997 6
Q ss_pred -CcEEEEEEEEEE
Q psy7396 129 -GALVATGVHTKY 140 (145)
Q Consensus 129 -g~~~a~a~~~~~ 140 (145)
|+++.+++++..
T Consensus 112 ~g~~V~~g~~~v~ 124 (126)
T cd03447 112 TGELVLRGEAEVE 124 (126)
T ss_pred CCCEEEEEEEEEe
Confidence 898888887653
No 45
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=98.34 E-value=1.3e-05 Score=55.16 Aligned_cols=83 Identities=16% Similarity=0.050 Sum_probs=61.5
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeE-EEEEEEEEeecCCCCCEEEEEEEEEecC------ceEEEEEE
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGV-SVDLHITYIRGAKIGEQIVIESSTKKCG------KKLAFLDV 121 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~v-t~~l~i~fl~pv~~g~~l~~~~~~~~~g------r~~~~~~~ 121 (145)
.+||..+++++..... . ..+ +.... ...-+++|++|+.+||+|+++.++.... +..+.+++
T Consensus 52 ia~G~l~~s~~~~l~~---~-~~~--------~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~ 119 (142)
T cd03452 52 VAHGYFVLSAAAGLFV---D-PAP--------GPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDA 119 (142)
T ss_pred eecHHHHHHHHhhhCc---c-CCc--------ccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEE
Confidence 6888888888875321 1 111 11111 1123899999999999999999997652 24788999
Q ss_pred EEEECCCCcEEEEEEEEEEEecC
Q psy7396 122 LIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 122 ~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
++.++ +|+++.+++...++.++
T Consensus 120 ~~~nq-~g~~V~~~~~~~~~~~~ 141 (142)
T cd03452 120 EVTNQ-NGELVASYDILTLVAKK 141 (142)
T ss_pred EEEec-CCCEEEEEEehHeeEec
Confidence 99998 99999999999988765
No 46
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.33 E-value=0.00013 Score=49.80 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=74.7
Q ss_pred EEEEee-CCEEEEEEEeCCCCc---Cc---cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEee
Q psy7396 24 NILSAA-DGKCVAEMKISQEHT---NT---FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIR 95 (145)
Q Consensus 24 ~v~~~~-~~~~~~~~~~~~~~~---n~---~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~ 95 (145)
++.+++ ++.++....+++++- ++ ...+=|=++..++-.+++..+...... .+. .........+ +++|++
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~kF~~ 96 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGG--EIG-KGKLVYFAGIDKAKFRR 96 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccc--cCC-CCcEEEEeecceeEECC
Confidence 455666 457888888877642 21 223445455555544444332211110 000 0234455555 899999
Q ss_pred cCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEE
Q psy7396 96 GAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140 (145)
Q Consensus 96 pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~ 140 (145)
|+.+||++++.+++.+..++...++++++. +|+++++++.+++
T Consensus 97 ~v~pGd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 97 PVVPGDQLILHAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred ccCCCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 999999999999999999999999999987 8999999998875
No 47
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=98.32 E-value=1.1e-05 Score=61.86 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=69.7
Q ss_pred ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEE
Q psy7396 46 TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKN 125 (145)
Q Consensus 46 ~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~ 125 (145)
....++||.+++.+=.|+...+. .....-+++++|++|+..+..|..+++.++.||+.++..+++++
T Consensus 30 ~~r~~fGGqv~AQal~AA~~tv~-------------~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q 96 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKETVP-------------EERLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ 96 (286)
T ss_pred CCCceechHHHHHHHHHHHhcCC-------------CCCCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE
Confidence 35689999999998877555442 22356799999999999998999999999999999999999999
Q ss_pred CCCCcEEEEEEEEEEEe
Q psy7396 126 KETGALVATGVHTKYIA 142 (145)
Q Consensus 126 ~~~g~~~a~a~~~~~v~ 142 (145)
+|+++.+++++|...
T Consensus 97 --~g~~if~~~~sF~~~ 111 (286)
T PRK10526 97 --NGKPIFYMTASFQAP 111 (286)
T ss_pred --CCEEEEEEEEEeccC
Confidence 899999999998743
No 48
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.31 E-value=1.2e-05 Score=54.73 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=44.0
Q ss_pred EEEEEeecCCCCCEEEEEEEEEecC------ceEEEEEEEEEECCCCcEEEEEEEEEE
Q psy7396 89 LHITYIRGAKIGEQIVIESSTKKCG------KKLAFLDVLIKNKETGALVATGVHTKY 140 (145)
Q Consensus 89 l~i~fl~pv~~g~~l~~~~~~~~~g------r~~~~~~~~i~~~~~g~~~a~a~~~~~ 140 (145)
-+++|++|+.+||+|++++++.+.. +..+.++.++.++ +|+++++++.+.+
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~l 139 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQ-RGEVVQSGEMSLL 139 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcC-CCCEEEEEEEeee
Confidence 3899999999999999999997653 3478889999998 9999999988765
No 49
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.28 E-value=3.4e-05 Score=51.86 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEec----CceEEEEEEEEE
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC----GKKLAFLDVLIK 124 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~----gr~~~~~~~~i~ 124 (145)
.+||-.+++++...... . .+ ......+++++|++|+.+||+|+++.++... +++.+.++.+++
T Consensus 46 i~~G~~~~~~~~~~~~~---~-~~---------~~~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~ 112 (127)
T cd03453 46 IAHGMLTMGLLGRLVTD---W-VG---------DPGRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDAT 112 (127)
T ss_pred EecHHHHHHHHHHHHHH---H-cC---------CccceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEE
Confidence 69999988888544222 1 11 1122357889999999999999999999642 456899999999
Q ss_pred ECCCCcEEEEEEEE
Q psy7396 125 NKETGALVATGVHT 138 (145)
Q Consensus 125 ~~~~g~~~a~a~~~ 138 (145)
++ +|+++.++++.
T Consensus 113 nq-~g~~v~~g~a~ 125 (127)
T cd03453 113 DQ-AGGKKVLGRAI 125 (127)
T ss_pred Ec-CCCEEEEEEEE
Confidence 98 89988888765
No 50
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.25 E-value=0.00027 Score=47.21 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=76.8
Q ss_pred EEEEeeC-CEEEEEEEeCCCCcCcc------CCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEE-EEEEEee
Q psy7396 24 NILSAAD-GKCVAEMKISQEHTNTF------GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVD-LHITYIR 95 (145)
Q Consensus 24 ~v~~~~~-~~~~~~~~~~~~~~n~~------g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~-l~i~fl~ 95 (145)
++.++++ +.+.....+++++--.. +.+=|-++..++-.+++..+....... .......+... -+++|++
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~---~~~~~~~~l~~~~~~kf~~ 87 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGK---GNPPRLGYLAGVRKVKFRG 87 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhccccc---ccCCcEEEEEEcceeEECC
Confidence 4566676 78888888887643222 456566666566555555544332100 01123344444 4899999
Q ss_pred cCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEE
Q psy7396 96 GAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138 (145)
Q Consensus 96 pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~ 138 (145)
|+.+|+++++++++.+.+.+.+.++++++. +|+++++++.+
T Consensus 88 ~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~v~~~~~~ 128 (131)
T cd00493 88 PVLPGDTLTLEVELLKVRRGLGKFDGRAYV--DGKLVAEAELM 128 (131)
T ss_pred CcCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEE
Confidence 999999999999999999899999999999 79999999843
No 51
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.25 E-value=8.7e-06 Score=65.25 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred ccccccccccceecceEEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEE
Q psy7396 8 KTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSV 87 (145)
Q Consensus 8 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~ 87 (145)
+..++...++...+. ++...++. ++....+.+. ..+.+|||.+++++=.|+...+. ......
T Consensus 123 ~~~~~~~~~l~~~~~--l~~~~~~~--f~~~~~~~~~-~~~~~fGG~~~aqal~Aa~~~~~-------------~~~~~~ 184 (413)
T PLN02868 123 DKTPKDCSLVERILH--LEPLEVDI--FRGITLPDAP-TFGKVFGGQLVGQALAAASKTVD-------------PLKLVH 184 (413)
T ss_pred cCChhhHHHHHhhcC--cEeccCCe--EECCcCCCCc-ccccccchHHHHHHHHHHHccCC-------------CCCCce
Confidence 333334443333443 44555543 3333444432 35789999999987766444332 123456
Q ss_pred EEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 88 DLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 88 ~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
+++.+|++|...+..+..+++.++.||+..+.++++++ +|+++.++.++|...
T Consensus 185 s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q--~g~~~~~~~~sf~~~ 237 (413)
T PLN02868 185 SLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQ--KGKVIFTLFASFQKE 237 (413)
T ss_pred EeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEE--CCeeEEEEeeccccC
Confidence 89999999998877899999999999999999999999 789999999887653
No 52
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=98.22 E-value=3.4e-05 Score=54.20 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=50.8
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEEEEec----CceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 84 GVSVDLHITYIRGAKIGEQIVIESSTKKC----GKKLAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 84 ~vt~~l~i~fl~pv~~g~~l~~~~~~~~~----gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
.+-...+++|++|+.+||+|+++.+++.. ++..++++.+++++ +|+++.++..++++.+
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-~Ge~V~~~~~~~~~r~ 146 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-EGDVVQETYTTLAGRA 146 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-CCCEEEEEEEEEEEec
Confidence 44455789999999999999999999743 55789999999998 9999999999998864
No 53
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.19 E-value=3.6e-05 Score=52.46 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=45.4
Q ss_pred EEEEEeecCCCCCEEEEEEEEEec-------CceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 89 LHITYIRGAKIGEQIVIESSTKKC-------GKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 89 l~i~fl~pv~~g~~l~~~~~~~~~-------gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
.+++|++|+.+||+|++++++.+. ++..+.+++++.++ +|++++++..+.++
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~~~ 139 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQ-RGEVVLTFEATVLV 139 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcC-CCCEEEEEEehhee
Confidence 489999999999999999999754 34588999999998 99999999987764
No 54
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.15 E-value=0.00014 Score=54.87 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=84.3
Q ss_pred EEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccc------cccccceeEEEEEEEEEeecCCCCCEEEEEE
Q psy7396 34 VAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEE------SSKISHSGVSVDLHITYIRGAKIGEQIVIES 107 (145)
Q Consensus 34 ~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~------~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~ 107 (145)
.-.+.+....++..|.+.=..++.++-++++..+...+..... ..+.+..++...+.+++.++...|++|++++
T Consensus 5 ~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~T 84 (261)
T PF01643_consen 5 EKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIET 84 (261)
T ss_dssp EEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEE
T ss_pred EEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEE
Confidence 4568889999999999999999999999988777666532222 2344678999999999999999999999999
Q ss_pred EEEecCceEEEEEEEEEE-CCCCcEEEEEEEEEEEec
Q psy7396 108 STKKCGKKLAFLDVLIKN-KETGALVATGVHTKYIAG 143 (145)
Q Consensus 108 ~~~~~gr~~~~~~~~i~~-~~~g~~~a~a~~~~~v~~ 143 (145)
.....++-.+.=+.++++ + +|+++++|...+++++
T Consensus 85 w~~~~~~~~~~R~f~i~d~~-~G~~l~~a~s~WvliD 120 (261)
T PF01643_consen 85 WPSGFKRFFAYRDFEIYDAE-DGELLARATSIWVLID 120 (261)
T ss_dssp EEEEE-SSEEEEEEEEE--T-TS-EEEEEEEEEEEEE
T ss_pred EeccCCCcEEEEEEEEEECC-CCcEEEEEEEEEEEEE
Confidence 999999999999999999 7 9999999999999874
No 55
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=98.14 E-value=0.00039 Score=56.54 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=79.4
Q ss_pred EEEeeCCEEEEEEEeCCCC--cC----ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEeecC
Q psy7396 25 ILSAADGKCVAEMKISQEH--TN----TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIRGA 97 (145)
Q Consensus 25 v~~~~~~~~~~~~~~~~~~--~n----~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~pv 97 (145)
+.+++++.++....++.+. .. ....++|=.+..++-.+++..+...... ..+...+..++ +++|++|+
T Consensus 342 Il~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~-----~~g~lg~LlgI~kvKF~~PV 416 (464)
T PRK13188 342 IIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPD-----PENYSTYFMKIDKVKFRQKV 416 (464)
T ss_pred EeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCC-----CCCceEEEEeccEEEEcCCC
Confidence 4455566777777666542 32 3456888777766666655544322110 00234455666 79999999
Q ss_pred CCCCEEEEEEEEEe-cCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 98 KIGEQIVIESSTKK-CGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 98 ~~g~~l~~~~~~~~-~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
.+||++++++++++ ..++.+.++++++. +|+++++++..+++.+.
T Consensus 417 ~PGDtL~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~~ 462 (464)
T PRK13188 417 VPGDTLIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVKK 462 (464)
T ss_pred CCCCEEEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEecc
Confidence 99999999999987 55778899999996 99999999999988754
No 56
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=98.07 E-value=0.00011 Score=59.92 Aligned_cols=97 Identities=16% Similarity=0.288 Sum_probs=71.4
Q ss_pred EEEEeCCCCcCc---------cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEE
Q psy7396 35 AEMKISQEHTNT---------FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVI 105 (145)
Q Consensus 35 ~~~~~~~~~~n~---------~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~ 105 (145)
+....+|-|.+. .-.+||..+++++...... ..+ +...+....+++|.+|+.+||+|++
T Consensus 37 lsGD~nPiH~D~e~Ak~sgfg~~IahG~l~~s~~~~l~~~----~~~--------g~~~~~~~~~~rF~~PV~~GDtl~~ 104 (466)
T PRK08190 37 MSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALISAVLGT----RLP--------GPGTIYLGQSLRFRRPVRIGDTLTV 104 (466)
T ss_pred HhCCCCCCCcCHHHHHhCCCCCceeCHHHHHHHHHHHHhh----hCC--------CcceEEEEEEEEEeCCcCCCCEEEE
Confidence 444566666653 1269998888877543211 121 2344556789999999999999999
Q ss_pred EEEEEec--CceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 106 ESSTKKC--GKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 106 ~~~~~~~--gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
+.++... ++..+.++++++++ +|+++.+++.+..+.++
T Consensus 105 ~~~V~~~~~~~~~v~~~~~~~nq-~G~~V~~g~~~~l~~~~ 144 (466)
T PRK08190 105 TVTVREKDPEKRIVVLDCRCTNQ-DGEVVITGTAEVIAPTE 144 (466)
T ss_pred EEEEEEEECCCCEEEEEEEEEeC-CCCEEEEEEEEeecccc
Confidence 9999753 66688899999998 99999999998887653
No 57
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.99 E-value=0.00012 Score=51.72 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=49.3
Q ss_pred EEEEEEEEeecCCCCCEEEEEEEEEec----CceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 86 SVDLHITYIRGAKIGEQIVIESSTKKC----GKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 86 t~~l~i~fl~pv~~g~~l~~~~~~~~~----gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
-...+.+|++|+.+||+|+++.++... ++..+.++.++.|+ +|++++++..++++..+
T Consensus 86 ~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~~~ 147 (166)
T PRK13691 86 QVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTND-DGELVMEAYTTLMGQQG 147 (166)
T ss_pred eeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECC-CCCEEEEEEEEEEEecC
Confidence 345688899999999999999998754 44689999999998 99999999999887643
No 58
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.95 E-value=0.0017 Score=44.18 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred EEEEee-CC-E----EEEEEEeCCCCc------CccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEE-EEE
Q psy7396 24 NILSAA-DG-K----CVAEMKISQEHT------NTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSV-DLH 90 (145)
Q Consensus 24 ~v~~~~-~~-~----~~~~~~~~~~~~------n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~-~l~ 90 (145)
++.+++ ++ . ++....+++++- .....+=|-++...+=.++++.+....... ...++....... --+
T Consensus 12 ~v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 90 (138)
T PF07977_consen 12 RVLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAE-GTGEARKVPFLAGIRN 90 (138)
T ss_dssp EEEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSS-SCCCCCEEEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccc-cCCCcceEEEeccccE
Confidence 456666 44 4 788888876543 123456666666555555555555443210 000000123334 447
Q ss_pred EEEeecCCCCC-EEEEEEEEEe---cCceEEEEEEEEEECCCCcEEEEEE
Q psy7396 91 ITYIRGAKIGE-QIVIESSTKK---CGKKLAFLDVLIKNKETGALVATGV 136 (145)
Q Consensus 91 i~fl~pv~~g~-~l~~~~~~~~---~gr~~~~~~~~i~~~~~g~~~a~a~ 136 (145)
++|++|+.+|+ .+++++++.+ ..+..+..+++++. +|+.++++.
T Consensus 91 ~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 91 VKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEEE
T ss_pred EEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEE--CCEEEEEEC
Confidence 99999999999 9999999999 88999999999999 899998874
No 59
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.89 E-value=0.00058 Score=44.50 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=69.1
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCC
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKET 128 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~ 128 (145)
.+|-..++.+.|...........+.. ........+.+-+++|++|....+.+..+.+..+.++.....+++++++ +
T Consensus 16 ~~~~a~lA~~SD~~~l~~~~~~~~~~---~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~-~ 91 (104)
T cd03444 16 RLHAAALAYLSDSLLLGTALRPHGLP---LFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR-D 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC---cccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC-C
Confidence 57888999999988655555443310 0012466788889999999998889999999999999999999999999 9
Q ss_pred CcEEEEEEEEE
Q psy7396 129 GALVATGVHTK 139 (145)
Q Consensus 129 g~~~a~a~~~~ 139 (145)
|+++|+..-..
T Consensus 92 G~LvAs~~Q~~ 102 (104)
T cd03444 92 GELVASVAQEG 102 (104)
T ss_pred CCEEEEEEEee
Confidence 99999886543
No 60
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.85 E-value=0.0039 Score=43.38 Aligned_cols=108 Identities=12% Similarity=0.009 Sum_probs=72.3
Q ss_pred EEEEEEEeCCCC--cC----ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEE-EEEEEeecCCCCC-EE
Q psy7396 32 KCVAEMKISQEH--TN----TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVD-LHITYIRGAKIGE-QI 103 (145)
Q Consensus 32 ~~~~~~~~~~~~--~n----~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~-l~i~fl~pv~~g~-~l 103 (145)
+++....++++. .. ....+=|-.+...+-.+++..+...... ..........+... -+++|.+++.+|+ ++
T Consensus 28 ~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l 106 (150)
T cd01287 28 YLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLG-TGVDNPRFQGAPGGPGEWKYRGQITPHNKKV 106 (150)
T ss_pred EEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccc-cccCcccceeEeccceEEEECccCcCCCEEE
Confidence 577777777653 33 3445667677766666666554432210 00000011223333 3699999999998 89
Q ss_pred EEEEEEEecCc----eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 104 VIESSTKKCGK----KLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 104 ~~~~~~~~~gr----~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
++++++.+.++ +.+..++.++. +|+++++++..-+.+
T Consensus 107 ~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~~~~~ 147 (150)
T cd01287 107 TYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEccEEEe
Confidence 99999999864 99999999999 999999998765544
No 61
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=97.72 E-value=0.001 Score=46.18 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEec---Cc--eEEEEEEEE
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC---GK--KLAFLDVLI 123 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~---gr--~~~~~~~~i 123 (145)
.+||..+++++......... .... .........+++|++|+.+||+|+++.++.+. .+ -.++.++++
T Consensus 58 Ia~G~~t~sl~~~l~~~~~~-~~~~-------~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~ 129 (149)
T cd03450 58 IAHGFLTLSLLPALTPQLFR-VEGV-------KMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTV 129 (149)
T ss_pred EECHHHHHHHHHHHHHhccc-CCCc-------eEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEE
Confidence 68999988887765332211 1000 11122334589999999999999999999752 22 488888888
Q ss_pred EECCCCcEEEEEEEEEEE
Q psy7396 124 KNKETGALVATGVHTKYI 141 (145)
Q Consensus 124 ~~~~~g~~~a~a~~~~~v 141 (145)
.-++.+++++.++-.++.
T Consensus 130 ~~~~~~~p~~~~~~~~~~ 147 (149)
T cd03450 130 EIEGEDKPACVAEWISRL 147 (149)
T ss_pred EEeCCCCceEEEEEEEee
Confidence 887677888888776654
No 62
>KOG3016|consensus
Probab=97.71 E-value=0.0006 Score=51.82 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=81.4
Q ss_pred EEEEeeCCEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEE
Q psy7396 24 NILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQI 103 (145)
Q Consensus 24 ~v~~~~~~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l 103 (145)
+++.++++-...+....+. .++.+.++||.+++-+=.|+ ...- +...+.-+++.+|++...+...|
T Consensus 15 ~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQaLaAA-----~~TV--------~e~f~p~SlH~YFI~~gd~~~pI 80 (294)
T KOG3016|consen 15 NLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQALAAA-----SKTV--------EEMFIPHSLHCYFILVGDPNIPI 80 (294)
T ss_pred eeeecCCCceecccCCccc-cccCcccccceehHHHHHHH-----Hhcc--------ccccccceeeeeeeecCCCCCce
Confidence 4555666543443333332 36788999999998876653 2211 35677889999999999999999
Q ss_pred EEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 104 VIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 104 ~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
.-..+-+|-||+.++=.++.++ +|++|.++...|....+
T Consensus 81 ~Y~V~rirdGr~F~~R~V~AvQ--~~k~If~~qiSF~~~~k 119 (294)
T KOG3016|consen 81 IYDVKRIRDGRNFATRSVDAVQ--KGKTIFTLQISFQQSEK 119 (294)
T ss_pred EEEeeeecCCceeEEEEEEEEE--CCeEEEEEEEEEccccC
Confidence 9999999999999999999999 89999999999985544
No 63
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.50 E-value=0.0048 Score=45.95 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=66.1
Q ss_pred EEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEE-eecCCCCCEEEEEEEEE
Q psy7396 32 KCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITY-IRGAKIGEQIVIESSTK 110 (145)
Q Consensus 32 ~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~f-l~pv~~g~~l~~~~~~~ 110 (145)
.....+...+...+. +--.++.++|............. .-....|.+++|+| ..|...++.+.++++..
T Consensus 156 ~~~~W~R~~~~~~~~----~~~~l~~~~D~~~~~~~~~~~~~------~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~ 225 (255)
T PF13622_consen 156 ELRGWIRLRDPLPDG----DFAALAFLSDAFPPATLRAFSGP------EWWFPATLDHTIHFHRLPFDGDEWLLLEARSP 225 (255)
T ss_dssp EEEEEEEESTTT-CT----HHHHHHHHCTCCHHHHHHCHTSS--------B-EEEEEEEEEECSHCCTTTS-EEEEEEEE
T ss_pred eEEEEEEeCCCcccc----hHHHHHHHHHhcchhhccccCCc------cccccccceeEEEEEeCCccCCceEEEEEEEe
Confidence 455666666554431 22248888887633333322210 00345599999997 44666688999999999
Q ss_pred ecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 111 KCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 111 ~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
..++.....+++++++ +|+++|++.-..+|
T Consensus 226 ~~~~Gr~~~~~~l~d~-~G~lvA~~~Q~~lv 255 (255)
T PF13622_consen 226 RAGNGRALMEGRLWDE-DGRLVASSRQEALV 255 (255)
T ss_dssp EEETTEEEEEEEEEET-TS-EEEEEEEEEE-
T ss_pred EeCCCEEEEEEEEECC-CCCEEEEEEEEeeC
Confidence 9999999999999999 99999999877654
No 64
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.50 E-value=0.0044 Score=46.76 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=71.6
Q ss_pred EEEEEEeCCCCcCccCCchHHHHHHHHHHHhH-HhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEe
Q psy7396 33 CVAEMKISQEHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKK 111 (145)
Q Consensus 33 ~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~-~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~ 111 (145)
....+......-+. -..|-..++.+.|.... .++..+.... .......+.+.+++|+++.+.++++..+++...
T Consensus 167 ~~~W~R~~~~l~~d-~~~~~~~la~~sD~~~l~~~l~~~~~~~----~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~ 241 (271)
T TIGR00189 167 QYVWRRARGSLPDD-PRLHQCALAYLSDLTLLPTALNPHNKAG----FDGSMAASLDHSIWFHRPFRADDWLLYKCSSPS 241 (271)
T ss_pred EEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCcc----cCCcEEEeeeeeEEEeCCCCCCeeEEEEEEecc
Confidence 44555554433222 24577889999998322 2222222110 001345688889999999888999999999999
Q ss_pred cCceEEEEEEEEEECCCCcEEEEEEEEEE
Q psy7396 112 CGKKLAFLDVLIKNKETGALVATGVHTKY 140 (145)
Q Consensus 112 ~gr~~~~~~~~i~~~~~g~~~a~a~~~~~ 140 (145)
.+......+++++++ +|+++|++.-.-+
T Consensus 242 ~~~Grg~~~~~l~d~-~G~lvAs~~Qe~l 269 (271)
T TIGR00189 242 ASGSRGLVEGKIFTR-DGVLIASTVQEGL 269 (271)
T ss_pred ccCCceEEEEEEECC-CCCEEEEEEeeee
Confidence 999999999999998 9999998875433
No 65
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=97.46 E-value=0.0022 Score=42.99 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCC
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKET 128 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~ 128 (145)
.+||-.+++++..... ....+ +.......++++|.+|+.+||+|+++.+. .++ .+.+++++.+ +
T Consensus 46 iahG~~t~a~~~~~~~---~~~~~--------~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~~--~ 109 (122)
T cd03448 46 ILHGLCTYGFAARAVL---EAFAD--------GDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVVE--R 109 (122)
T ss_pred eehhHHHHHHHHHHHH---HHhcC--------CCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEcc--C
Confidence 6899888888765432 11211 23344567799999999999999998873 344 6777777765 6
Q ss_pred CcEEEEE
Q psy7396 129 GALVATG 135 (145)
Q Consensus 129 g~~~a~a 135 (145)
|+++.++
T Consensus 110 g~~v~~g 116 (122)
T cd03448 110 DVVVLSN 116 (122)
T ss_pred CcEEEEC
Confidence 6665444
No 66
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.38 E-value=0.0023 Score=44.39 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=52.0
Q ss_pred eeEEEEE-EEEEeecCCCCCEEEEEEEEEecC-ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 83 SGVSVDL-HITYIRGAKIGEQIVIESSTKKCG-KKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 83 ~~vt~~l-~i~fl~pv~~g~~l~~~~~~~~~g-r~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
...-..+ ++.|.+|+.+|+.+.++.++++.+ +......++... +|+++++++..++....
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~V--dg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATV--DGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEE--CCEEEEEEEEEEEEeec
Confidence 3344444 799999999999999999999999 888999999998 99999999999988754
No 67
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=97.36 E-value=0.0059 Score=42.78 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=48.4
Q ss_pred EEEEEEEEeecCCCCCEEEEEEEEEecC----ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 86 SVDLHITYIRGAKIGEQIVIESSTKKCG----KKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 86 t~~l~i~fl~pv~~g~~l~~~~~~~~~g----r~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
..--+++|.+|+.+||+|+++.++.... ++.+.+..+..+. +|+.+........+.++
T Consensus 96 ~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~-~g~~v~~~~~~~~~~~~ 157 (159)
T COG2030 96 LGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQ-EGELVLTLEATVLVLRR 157 (159)
T ss_pred ccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEcc-CCcEEEEEEEeEeEeec
Confidence 3344799999999999999999998643 3788999999998 89999999888887743
No 68
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.28 E-value=0.011 Score=40.66 Aligned_cols=78 Identities=10% Similarity=0.136 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCC-----CEEEEEEEEEec--CceEEEEEE
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIG-----EQIVIESSTKKC--GKKLAFLDV 121 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g-----~~l~~~~~~~~~--gr~~~~~~~ 121 (145)
.+||...++++-..... ... ....+ .+++++|.+|+.+| +++++++++... +++.+.+++
T Consensus 56 iahG~~~~a~~~~~~~~----~~~--------~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~ 122 (142)
T PRK13693 56 IAHGMLTMGLGGGYVTS----WVG--------DPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIAL 122 (142)
T ss_pred EecHHHHHHHHHHHHHH----hcC--------CCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEE
Confidence 69999998888764322 111 12222 47899999999853 389999998754 667888888
Q ss_pred EEEECCCCcEEEEEEEEEE
Q psy7396 122 LIKNKETGALVATGVHTKY 140 (145)
Q Consensus 122 ~i~~~~~g~~~a~a~~~~~ 140 (145)
.+.++ +++++..+.+...
T Consensus 123 ~~~~~-~~~~~~~~~~~~~ 140 (142)
T PRK13693 123 TATTG-GKKIFGRAIASAK 140 (142)
T ss_pred EEEEC-CcEEEEEEEEEEE
Confidence 88875 5555666655543
No 69
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=97.27 E-value=0.0012 Score=50.33 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=68.6
Q ss_pred ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEE
Q psy7396 46 TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKN 125 (145)
Q Consensus 46 ~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~ 125 (145)
+.-.++||.+.+.+=.|+...+. ...+.-++..+|++|..+.+.|.-.++.+|-||+...-+++.++
T Consensus 30 g~~~vFGGqvvaQAL~Aa~~TV~-------------~~r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ 96 (289)
T COG1946 30 GLRRVFGGQVVAQALVAALRTVP-------------EDRVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQ 96 (289)
T ss_pred CCccccccchHHHHHHHHHhhcC-------------CCCCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEEE
Confidence 44578999998887765333222 33456678889999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEEEEEec
Q psy7396 126 KETGALVATGVHTKYIAG 143 (145)
Q Consensus 126 ~~~g~~~a~a~~~~~v~~ 143 (145)
+|+++..+.++|.+..
T Consensus 97 --~g~~If~~~ASF~~~e 112 (289)
T COG1946 97 --HGKLIFSATASFQVPE 112 (289)
T ss_pred --CCEEEEEEEeeccCCC
Confidence 9999999999998754
No 70
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.25 E-value=0.0019 Score=42.99 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEE
Q psy7396 48 GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIK 124 (145)
Q Consensus 48 g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~ 124 (145)
-.+||..+++++..... ..... ........++++|++|+.+||+|.+..++.+.....-...+++.
T Consensus 51 ~ivhG~~~~a~~~~~~~---~~~~~--------~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~ 116 (122)
T PF01575_consen 51 PIVHGMLTLALASGLLG---DWLGP--------NPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVT 116 (122)
T ss_dssp SB-BHHHHHHHHHHHHH---HHHST--------TECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEccHHHHHHHHHHHH---HhccC--------ccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEE
Confidence 37999999988875422 22221 23567889999999999999999999999875544444444443
No 71
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=97.25 E-value=0.0026 Score=42.69 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=39.6
Q ss_pred cceeEEEEEEEEEeecCCCCCEEEEEEEEEe----cC---ceEEEEEEEEEECCCCcEEEE
Q psy7396 81 SHSGVSVDLHITYIRGAKIGEQIVIESSTKK----CG---KKLAFLDVLIKNKETGALVAT 134 (145)
Q Consensus 81 ~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~----~g---r~~~~~~~~i~~~~~g~~~a~ 134 (145)
....+-.+.++.|++|+++|++|++++++.. .| ...+.++.+++|+ +|+++++
T Consensus 72 ~~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~-~Ge~v~t 131 (132)
T PF13452_consen 72 LTRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ-DGELVAT 131 (132)
T ss_dssp GGGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C-TTEEEEE
T ss_pred hhhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCEEEe
Confidence 3566778899999999999999999999964 22 2346677888888 9999976
No 72
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=97.20 E-value=0.0026 Score=54.16 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=66.1
Q ss_pred EEEEeCCCCcCc---------cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeE-EEEEEEEEeecCCCCCEEE
Q psy7396 35 AEMKISQEHTNT---------FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGV-SVDLHITYIRGAKIGEQIV 104 (145)
Q Consensus 35 ~~~~~~~~~~n~---------~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~v-t~~l~i~fl~pv~~g~~l~ 104 (145)
+..+.+|-|+|. .-.+||-.+++++.... .. ... +.... ....+++|++|+.+||+|+
T Consensus 552 ~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~---~~-~~~--------~~~~~~~g~~~~rF~~PV~~GDtl~ 619 (663)
T TIGR02278 552 LSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLF---VD-PAP--------GPVLANYGLENLRFLEPVGPGDTIQ 619 (663)
T ss_pred hhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHh---hc-cCc--------cchhhhcccceEEEcCCCCCCCEEE
Confidence 445677777763 12789998888885432 11 111 11111 2234899999999999999
Q ss_pred EEEEEEec------CceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 105 IESSTKKC------GKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 105 ~~~~~~~~------gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
++++++.. +...+++++++.++ +|+++.++....++.
T Consensus 620 ~~~~V~e~~~~~~~~~g~v~~~~~v~nq-~G~~Vl~~~~~~lv~ 662 (663)
T TIGR02278 620 VRLTVKRKTPRDEKTYGVVEWAAEVVNQ-NGEPVATYDVLTLVA 662 (663)
T ss_pred EEEEEEEEEecCCCCceEEEEEEEEEcC-CCCEEEEEEEHHhcc
Confidence 99999754 12378999999998 899999998877653
No 73
>KOG2763|consensus
Probab=97.07 E-value=0.016 Score=45.60 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=77.5
Q ss_pred eCCCCcCccCCchHH-HHHHHHHHHhHHhhhhccccccccccccceeEEEEEE-EEEeecCCCC-CEEEEEEEEEecCce
Q psy7396 39 ISQEHTNTFGTLHGG-MTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH-ITYIRGAKIG-EQIVIESSTKKCGKK 115 (145)
Q Consensus 39 ~~~~~~n~~g~vhGG-~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~-i~fl~pv~~g-~~l~~~~~~~~~gr~ 115 (145)
.-|.+.|..|..++| -+.-|+|++..++...+......+..-...++|++++ |+|.+|...| ..+.+.+.+...|++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 455667788999999 6999999997666644433211111112678899985 9999988777 467777999999999
Q ss_pred EEEEEEEEEECC----CCcEEEEEEEEEEEec
Q psy7396 116 LAFLDVLIKNKE----TGALVATGVHTKYIAG 143 (145)
Q Consensus 116 ~~~~~~~i~~~~----~g~~~a~a~~~~~v~~ 143 (145)
+.-+.+.+.+++ +..++.+|..+|+..+
T Consensus 95 SMEv~i~V~q~~~~~~~~~~~~kA~f~fVard 126 (357)
T KOG2763|consen 95 SMEVSIYVMQEDLATGEKSLVLKATFTFVARD 126 (357)
T ss_pred ceEEEEEEEEehhccchhhheeeeEEEEEEec
Confidence 999999998821 4466888888887763
No 74
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.03 E-value=0.016 Score=44.47 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=72.9
Q ss_pred EEEEEeCCCCcCccCCchHHHHHHHHHHHhH-HhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEec
Q psy7396 34 VAEMKISQEHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC 112 (145)
Q Consensus 34 ~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~-~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~ 112 (145)
.+.+...+..-+. ..+|-.+++.+.|.-.. .++..+..... .......+.+-+|.|++|.+.++++..+.+....
T Consensus 179 ~~W~R~~~~~~~d-~~~~~~~lay~sD~~~l~~al~~~~~~~~---~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a 254 (286)
T PRK10526 179 QVWIRANGSVPDD-LRVHQYLLGYASDLNFLPVALQPHGIGFL---EPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSA 254 (286)
T ss_pred EEEEEeCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhhccCCcc---CCcceEEeeeEeEEEeCCCCCCceEEEEEECCcc
Confidence 3455555433322 25777788877764432 33333322100 0023445777789999999999999999999999
Q ss_pred CceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 113 GKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 113 gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
+......++.+|++ +|+++|++.-.-++..+
T Consensus 255 ~~gr~~~~g~i~~~-~G~LvAs~~Qegl~r~~ 285 (286)
T PRK10526 255 SSARGFVRGEFYTQ-DGVLVASTVQEGVMRNH 285 (286)
T ss_pred cCCceEEEEEEECC-CCCEEEEEEeeEEEEec
Confidence 99999999999998 99999998877665544
No 75
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=96.98 E-value=0.069 Score=37.86 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=62.1
Q ss_pred EEEEEEEeCCCC--c-C---ccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEE-E
Q psy7396 32 KCVAEMKISQEH--T-N---TFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQI-V 104 (145)
Q Consensus 32 ~~~~~~~~~~~~--~-n---~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l-~ 104 (145)
.++.+..++++. . + ....+=|=++...+=.+++..+...... ....+...-+++|.+|+.+|+++ .
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~-------~~g~l~gi~~~kfr~~v~Pgd~~~~ 123 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGP-------GRGRALGVGEVKFTGQVLPTAKKVT 123 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccC-------CceEEeeccEEEEccCEecCCeEEE
Confidence 677777777653 2 2 1223555555555555544444322210 12223222389999999999986 8
Q ss_pred EEEEEEec---CceEEEEEEEEEECCCCcEEEEEE
Q psy7396 105 IESSTKKC---GKKLAFLDVLIKNKETGALVATGV 136 (145)
Q Consensus 105 ~~~~~~~~---gr~~~~~~~~i~~~~~g~~~a~a~ 136 (145)
++.++.+. .++....+++++. +|+++|+++
T Consensus 124 l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~ 156 (169)
T TIGR01749 124 YRIHFKRVINRRLVMGIADGEVLV--DGRLIYTAS 156 (169)
T ss_pred EEEEEEEEeecCCcEEEEEEEEEE--CCEEEEEEE
Confidence 88888774 4678999999998 899999854
No 76
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=96.96 E-value=0.021 Score=43.11 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=66.7
Q ss_pred CEEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEE
Q psy7396 31 GKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTK 110 (145)
Q Consensus 31 ~~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~ 110 (145)
......+++.....+.+|+|+...+..++-++....+. ...-..+++|.|.+.+..|+.|.+.+.+.
T Consensus 164 ~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~-------------~~~~~~~i~I~y~~E~~~gd~i~~~~~~~ 230 (261)
T PF01643_consen 164 PEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFL-------------EKYQIKSIDINYKKEIRYGDTITSYTEVE 230 (261)
T ss_dssp TSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHH-------------CCEEEEEEEEEE-S--BTT-EEEEEEEEE
T ss_pred hheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhh-------------ccCCcEEEEEEEccccCCCCEEEEEEEEc
Confidence 35677899999999999999999999998876444332 23346799999999999999999998875
Q ss_pred e-cCceEEEEEEEEEECCCCcEEEEEEEEE
Q psy7396 111 K-CGKKLAFLDVLIKNKETGALVATGVHTK 139 (145)
Q Consensus 111 ~-~gr~~~~~~~~i~~~~~g~~~a~a~~~~ 139 (145)
. .+.......-.+.++ +|+.+|++...+
T Consensus 231 ~~~~~~~~~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 231 KDEEEDGLSTLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp EECCTTEEEEEEEEECT--TCEEEEEEEEE
T ss_pred ccccCCceEEEEEEEcC-CCceEEEEEEEE
Confidence 4 334455666678886 699999998765
No 77
>PLN02864 enoyl-CoA hydratase
Probab=96.73 E-value=0.039 Score=42.85 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCcCc---------cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEE
Q psy7396 33 CVAEMKISQEHTNT---------FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQI 103 (145)
Q Consensus 33 ~~~~~~~~~~~~n~---------~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l 103 (145)
..++...+|-|.|. .-++||-..++++-.+.. ....+ +......+++++|.+|+.+||+|
T Consensus 204 a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~---~~~~~--------~~~~~~~~~~~rF~~PV~pGdtl 272 (310)
T PLN02864 204 YRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVI---KCFCN--------GDPTAVKTISGRFLLHVYPGETL 272 (310)
T ss_pred HHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHH---hhhcC--------CCCceEEEEEEEEcCCccCCCEE
Confidence 34566777777773 236899888777655421 11121 22234457899999999999999
Q ss_pred EEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 104 VIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 104 ~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
.++.+ +.+ ..+.+++.+ ++ +|+++.++.++..-
T Consensus 273 ~~~~~--~~~-~~v~~~~~~-~~-~g~~vl~G~a~~~~ 305 (310)
T PLN02864 273 VTEMW--LEG-LRVIYQTKV-KE-RNKAVLSGYVDLRH 305 (310)
T ss_pred EEEEE--eCC-CEEEEEEEE-ec-CCeEEEEEEEEEec
Confidence 76654 333 457777776 44 78888888877653
No 78
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=96.70 E-value=0.12 Score=36.67 Aligned_cols=96 Identities=14% Similarity=0.016 Sum_probs=64.3
Q ss_pred EEEEEEEeCCCCc---Cc---cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCE-EE
Q psy7396 32 KCVAEMKISQEHT---NT---FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQ-IV 104 (145)
Q Consensus 32 ~~~~~~~~~~~~~---n~---~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~-l~ 104 (145)
.++.+..++++.- ++ ...+=|=.+...+-.+++..+...... +...+...-+.+|.+++.+|+. ++
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~-------~~g~l~g~~~~kfr~~v~Pgd~~l~ 126 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGP-------GKGRALGVGEVKFTGQVLPTAKKVT 126 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhccccc-------CceEEeeccEEEECccCcCCCEEEE
Confidence 5888888887532 22 223555555555555555544322210 1223333347999999999998 89
Q ss_pred EEEEEEec---CceEEEEEEEEEECCCCcEEEEEE
Q psy7396 105 IESSTKKC---GKKLAFLDVLIKNKETGALVATGV 136 (145)
Q Consensus 105 ~~~~~~~~---gr~~~~~~~~i~~~~~g~~~a~a~ 136 (145)
++.++.+. .++....+++++. +|+++++++
T Consensus 127 l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~ 159 (172)
T PRK05174 127 YEIDIKRVINRKLVMGIADGRVLV--DGEEIYTAK 159 (172)
T ss_pred EEEEEEEEecCCCCEEEEEEEEEE--CCEEEEEEE
Confidence 99988885 5778999999998 899999983
No 79
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.70 E-value=0.0075 Score=51.49 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=64.9
Q ss_pred EEEEeCCCCcCcc---------CCchHHHHHHHHHHHhHHhhhhccccccccccccceeE-EEEEEEEEeecCCCCCEEE
Q psy7396 35 AEMKISQEHTNTF---------GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGV-SVDLHITYIRGAKIGEQIV 104 (145)
Q Consensus 35 ~~~~~~~~~~n~~---------g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~v-t~~l~i~fl~pv~~g~~l~ 104 (145)
+....+|-|.|.. -.+||-.+++++..... . ..+ ..... ..--+++|++|+.+||+|+
T Consensus 564 lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~---~-~~~--------~~~~~~~g~~~~rF~~PV~~GDtl~ 631 (675)
T PRK11563 564 LSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFV---D-PAP--------GPVLANYGLENLRFLTPVKPGDTIQ 631 (675)
T ss_pred hhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhh---c-cCc--------cchhhhcccceEEEcCCCCCCCEEE
Confidence 3456667777631 26888888777664321 1 111 11101 1112799999999999999
Q ss_pred EEEEEEecC------ceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 105 IESSTKKCG------KKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 105 ~~~~~~~~g------r~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
++.++.... +..+.+++++.++ +|+++.+++...++.
T Consensus 632 ~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 632 VRLTCKRKTPRRQAPYGVVRWDVEVTNQ-DGELVATYDILTLVA 674 (675)
T ss_pred EEEEEEEEEecCCCCceEEEEEEEEEEC-CCCEEEEEEEHHhcc
Confidence 999998652 2479999999998 999999998877653
No 80
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=96.55 E-value=0.019 Score=43.93 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=70.5
Q ss_pred EEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhh-ccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEec
Q psy7396 34 VAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLT-HKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC 112 (145)
Q Consensus 34 ~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~-~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~ 112 (145)
.+.++.+...-+-. .+|--.++.+-|......+.. +... -..++...++.+=++.|++|.+.+|+|.-..+.-..
T Consensus 179 ~vWira~~~~pdd~-~~~~~lLay~SD~~ll~tal~~Hg~~---~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A 254 (289)
T COG1946 179 QVWIRARGELPDDP-RLHQALLAYLSDFTLLDTALQPHGLG---FLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSA 254 (289)
T ss_pred eEEEEcCCCCCCCH-HHHHHHHHHhccchhhhhhhccCCCc---cccCcceEeeccceEEEeccccCCCEEEEEeeCCcc
Confidence 44555554433322 566666666666553322222 2210 011245566777789999999999999999999999
Q ss_pred CceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 113 GKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 113 gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
......+++.+++. +|+++|+..-.-++.
T Consensus 255 ~~~rgl~~G~lf~r-~G~LiA~~~QEG~~r 283 (289)
T COG1946 255 SGGRGLVRGQLFDR-DGQLIASVVQEGLIR 283 (289)
T ss_pred cCCcceeeeEEEcC-CCCEEEEEeeeEEEe
Confidence 99999999999998 999999876555544
No 81
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=96.19 E-value=0.046 Score=37.11 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEE-ECC
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIK-NKE 127 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~-~~~ 127 (145)
.+|--+++-+-|......+.... . -+. ....++++=++.|++|.+.++.+.-..+.-........++++++ +.
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H---~-~~~-~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q- 118 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPH---G-FGF-PKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQ- 118 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCG---C-CCC-CCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEEC-
T ss_pred hHhHHHHHHHhHHhHHHhhhccc---c-ccc-cccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecC-
Confidence 45666666666655333332211 1 111 23334777789999999999999999999999999999999999 66
Q ss_pred CCcEEEEEE
Q psy7396 128 TGALVATGV 136 (145)
Q Consensus 128 ~g~~~a~a~ 136 (145)
+|+++|+..
T Consensus 119 ~G~Lvas~~ 127 (131)
T PF02551_consen 119 DGELVASVV 127 (131)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999864
No 82
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.19 E-value=0.053 Score=43.60 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=67.7
Q ss_pred EEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccce--eEEEEEEEEEeecCCCCCEEEEEEEEEe
Q psy7396 34 VAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHS--GVSVDLHITYIRGAKIGEQIVIESSTKK 111 (145)
Q Consensus 34 ~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~--~vt~~l~i~fl~pv~~g~~l~~~~~~~~ 111 (145)
...+...+..-+ .-.+|-.+++.+.|......+..... .. ... ..+.+-++.|++|...++++..+.+...
T Consensus 312 ~~W~R~~~~~~~-d~~~~~a~lay~sD~~~l~~~l~~~~-----~~-~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~ 384 (413)
T PLN02868 312 RYWFRAKGKLSD-DQALHRCVAAYASDLIFLGTSLNPHR-----TK-GLKFAALSLDHSMWFHRPFRADDWLLFVIVSPA 384 (413)
T ss_pred EEEEEECCCCCC-CHHHHHHHHHHHhhhhhhHhhhcccc-----CC-CCceEEEEcceeEEEecCCCCCceEEEEEECCc
Confidence 344455443332 12578888888888654332221111 00 122 4566678999999999999999999999
Q ss_pred cCceEEEEEEEEEECCCCcEEEEEEE
Q psy7396 112 CGKKLAFLDVLIKNKETGALVATGVH 137 (145)
Q Consensus 112 ~gr~~~~~~~~i~~~~~g~~~a~a~~ 137 (145)
.+......++++|++ +|+++|+..-
T Consensus 385 a~~gr~~~~g~l~~~-~G~LvAs~~Q 409 (413)
T PLN02868 385 AHNGRGFATGHMFNR-KGELVVSLTQ 409 (413)
T ss_pred cCCCcceEEEEEECC-CCCEEEEEEe
Confidence 999999999999998 9999998753
No 83
>PLN02864 enoyl-CoA hydratase
Probab=96.07 E-value=0.067 Score=41.53 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=47.4
Q ss_pred eeEEEEEEEEEeecCCCCCEEEEEEEEEec---Cce-EEEEEEEEEECCCCcEEEEEEEEEEEec
Q psy7396 83 SGVSVDLHITYIRGAKIGEQIVIESSTKKC---GKK-LAFLDVLIKNKETGALVATGVHTKYIAG 143 (145)
Q Consensus 83 ~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~---gr~-~~~~~~~i~~~~~g~~~a~a~~~~~v~~ 143 (145)
..+=..-++.+++|++.++.+++++++... |+. .+.++.++.++.+|+++++...++++..
T Consensus 93 ~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg 157 (310)
T PLN02864 93 LLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRG 157 (310)
T ss_pred heeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeC
Confidence 444556679999999999999999999654 332 3577777777448999999999988763
No 84
>PLN02370 acyl-ACP thioesterase
Probab=95.88 E-value=0.21 Score=40.45 Aligned_cols=97 Identities=7% Similarity=-0.052 Sum_probs=68.2
Q ss_pred EEEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEE-
Q psy7396 32 KCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTK- 110 (145)
Q Consensus 32 ~~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~- 110 (145)
.....++++...++.+|+|+...+..++-++.-.-+.. ..-..+++|.|.+.+..|+.|.+.+...
T Consensus 301 ~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~-------------~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~ 367 (419)
T PLN02370 301 YIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIME-------------SHELAAITLEYRRECGRDSVLQSLTAVSG 367 (419)
T ss_pred ceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhh-------------cceEEEEEEEEcccCCCCCEEEEEEeecc
Confidence 34456899999999999999999999987764433321 2245789999999999999999877643
Q ss_pred ----ec-CceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q psy7396 111 ----KC-GKKLAFLDVLIKNKETGALVATGVHTKYIA 142 (145)
Q Consensus 111 ----~~-gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~ 142 (145)
.. ..........+..+ +|+.+++++..+.-.
T Consensus 368 ~~~~~~~~~~~~~~~h~~~~~-dG~e~a~a~t~Wr~~ 403 (419)
T PLN02370 368 TGIGNLGTAGDVECQHLLRLE-DGAEIVRGRTEWRPK 403 (419)
T ss_pred cccccccCCCcceEEEEEEcC-CCeEEEEEEEEEEEC
Confidence 11 11112233334444 899999999876543
No 85
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=95.87 E-value=0.31 Score=32.76 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCEEEEEEEeCCCCc---Cc-cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEE
Q psy7396 30 DGKCVAEMKISQEHT---NT-FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVI 105 (145)
Q Consensus 30 ~~~~~~~~~~~~~~~---n~-~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~ 105 (145)
++...+...+...|- ++ .+.+.|-.++..+=.++.......... + .+...+..+++++|.+++..+..+.+
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~v-p----~~~~~~~~~l~~~f~~~~e~~~P~~~ 93 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGV-P----LDHQFVLTSLDFTFSRFAELDVPADL 93 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCC-C----CCceEEEEEEEEEEccccccCCCEEE
Confidence 455555555544332 33 345666666656555533333222210 0 03567888999999999977777888
Q ss_pred EEEEEecC-----ceEEEEEEEEEECCCCcEEEEEEEEEE
Q psy7396 106 ESSTKKCG-----KKLAFLDVLIKNKETGALVATGVHTKY 140 (145)
Q Consensus 106 ~~~~~~~g-----r~~~~~~~~i~~~~~g~~~a~a~~~~~ 140 (145)
.+++.... .+...+++++++ +|++++++..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~q--~g~~~a~~~~~~t 131 (132)
T PF03756_consen 94 TVRITCRDRRGGRPRGLRFRVTVSQ--GGRVVATASMTFT 131 (132)
T ss_pred EEEEEeccccCCccceEEEEEEEEE--CCEEEEEEEEEEE
Confidence 77776433 348889999999 9999999998874
No 86
>KOG3016|consensus
Probab=94.64 E-value=0.2 Score=38.42 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE--EEEEeec-CCCCCEEEEEEEEEecCceEEEEEEEEEE
Q psy7396 49 TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL--HITYIRG-AKIGEQIVIESSTKKCGKKLAFLDVLIKN 125 (145)
Q Consensus 49 ~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l--~i~fl~p-v~~g~~l~~~~~~~~~gr~~~~~~~~i~~ 125 (145)
..|--+++.+-|..+...+...... ++...+..++ +|.|+++ .+.+|++.-++.....++++.++++.+|+
T Consensus 209 r~h~~~vaylSD~~ll~Ta~~~h~~------~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw~ 282 (294)
T KOG3016|consen 209 RLHRWVVAYLSDLILLTTALNPHNR------EGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLWN 282 (294)
T ss_pred hhceehHhhhhhHHHHHhcccchhh------ccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEEc
Confidence 4555666777776655444332211 0223333444 6999997 89999999999999999999999999999
Q ss_pred CCCCcEEEEE
Q psy7396 126 KETGALVATG 135 (145)
Q Consensus 126 ~~~g~~~a~a 135 (145)
. +|++++..
T Consensus 283 r-dG~l~~s~ 291 (294)
T KOG3016|consen 283 R-DGRLICST 291 (294)
T ss_pred c-CCcEEEEe
Confidence 8 99998753
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=94.44 E-value=0.71 Score=34.40 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=56.1
Q ss_pred cceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q psy7396 81 SHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144 (145)
Q Consensus 81 ~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v~~~ 144 (145)
+..++.....+++.+|+..++.++++..+....+.-|...+++.+ .|..+....+.++.+.+
T Consensus 53 ~l~WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~ 114 (250)
T COG3884 53 HLLWIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILMNR 114 (250)
T ss_pred CceEEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEEcc
Confidence 467889999999999999999999999999999999999999999 67777788888888765
No 88
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=94.02 E-value=1.9 Score=32.34 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=68.4
Q ss_pred CEEEEEEEeCCCCcCc--cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEE-EEEee-cCCCCCEEEEE
Q psy7396 31 GKCVAEMKISQEHTNT--FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLH-ITYIR-GAKIGEQIVIE 106 (145)
Q Consensus 31 ~~~~~~~~~~~~~~n~--~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~-i~fl~-pv~~g~~l~~~ 106 (145)
++...++.+.+...+. .-.+|. +++|.+.- ++..... .........+..++. +.+.+ |.+.++.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~P----~llD~~lq-~~~~~~~---~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~ 253 (295)
T PF14765_consen 182 GEALAEVRLPDDPASDPDPFVLHP----ALLDAALQ-AAGLALW---EDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVY 253 (295)
T ss_dssp SEEEEEEECGTTTGGGGGGSSS-H----HHHHHHHH-GHGCCHT---STTTTTSEEEEEEEEEEEESSS--SSTSEEEEE
T ss_pred ccceEEEEEEeeccCCCCceeECH----HHHHHHHH-HHHHHhc---cccCCCCEEcccEeCEEEEEeccCCCCCEEEEE
Confidence 7777777777654421 223454 55666544 2211100 000115678888884 88884 77788899999
Q ss_pred EEEEecCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q psy7396 107 SSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141 (145)
Q Consensus 107 ~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~~v 141 (145)
++..+.+...++.++.++|+ +|+++++.....+.
T Consensus 254 ~~~~~~~~~~~~~dv~v~d~-~G~~~~~~~gl~~~ 287 (295)
T PF14765_consen 254 ARLVKSDDDTITGDVTVFDE-DGRVVAELEGLTFR 287 (295)
T ss_dssp EEEESTTTTEEEEEEEEEET-TSBEEEEEEEEEEE
T ss_pred EEEecccceEEEEEEEEECC-CCCEEEEEccEEEE
Confidence 99999999999999999998 99999988876554
No 89
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=93.31 E-value=0.49 Score=35.24 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=57.4
Q ss_pred EEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEec
Q psy7396 33 CVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC 112 (145)
Q Consensus 33 ~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~ 112 (145)
....|+++-...+.+|+|+...+..++.+..+.-+..... ...+++.|.+|+.+|+.|++....-..
T Consensus 153 ~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~-------------p~r~~l~y~keva~G~~iti~~e~~~~ 219 (250)
T COG3884 153 EIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYG-------------PLRLTLEYVKEVAPGEKITIVYEVHPL 219 (250)
T ss_pred ccccceeEEEeeccccccccceehHHHHHHHhhhhHhhcc-------------cceeEEEEEcccCCCCeEEEEEEEccc
Confidence 3457888888889999999999999999987755554432 357899999999999999999998877
Q ss_pred CceE
Q psy7396 113 GKKL 116 (145)
Q Consensus 113 gr~~ 116 (145)
+.+-
T Consensus 220 ~s~~ 223 (250)
T COG3884 220 ESKH 223 (250)
T ss_pred Ccee
Confidence 7663
No 90
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=82.00 E-value=8 Score=38.47 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCc
Q psy7396 52 GGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGA 130 (145)
Q Consensus 52 GG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~ 130 (145)
++.--.+.|.+.-.++...... .+..++...+ ++...+|...|+...+..++.+...+.+..+++++++ +|+
T Consensus 2489 ~~~~p~~~D~~~Q~~~vW~~~~------~g~~sLP~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~-~g~ 2561 (2582)
T TIGR02813 2489 SGSQPFAEDILLQAMLVWARLK------YGAASLPSSIGEFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELYHQ-DGR 2561 (2582)
T ss_pred cccChhHHHHHHHHHHHHHHHh------cCCCCCCcccceEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEECC-CCc
Confidence 3344456666654444332111 0344555555 5788888999999999999999999999999999999 999
Q ss_pred EEEEEEEEEEEec
Q psy7396 131 LVATGVHTKYIAG 143 (145)
Q Consensus 131 ~~a~a~~~~~v~~ 143 (145)
++++....-++..
T Consensus 2562 ~~~~~~~~~~~~~ 2574 (2582)
T TIGR02813 2562 LSSEMKSAKVTIS 2574 (2582)
T ss_pred EEEEEeCCeEEEC
Confidence 9998877666654
No 91
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=74.22 E-value=12 Score=28.36 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCcCccC-CchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEEEEEEEEe
Q psy7396 33 CVAEMKISQEHTNTFG-TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKK 111 (145)
Q Consensus 33 ~~~~~~~~~~~~n~~g-~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~ 111 (145)
+-...+-.....|+.| ++||-.+++++-.++. ...+ . ....++.+=|+|+-+++++++-++...
T Consensus 186 IHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~----~~~p---------q--~~~Rf~fR~L~p~f~~~~lti~~~l~~ 250 (273)
T COG3777 186 IHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQ----PFLP---------Q--PIRRFRFRNLSPAFPNETLTICGSLSG 250 (273)
T ss_pred eeccCcceeeccCCCCceecchHHHHHHHHHhh----hhcc---------c--cchheeccccccccCCCCeeEeeEecC
Confidence 3333344445567777 6999999999876532 2221 1 256778888999999999999999988
Q ss_pred cCceEEEEEEEEEECCCCcEEEEEEEE
Q psy7396 112 CGKKLAFLDVLIKNKETGALVATGVHT 138 (145)
Q Consensus 112 ~gr~~~~~~~~i~~~~~g~~~a~a~~~ 138 (145)
.|+- +....+. ++.+..+|.+.
T Consensus 251 ~g~~----~~w~~~~-~~pv~mrarV~ 272 (273)
T COG3777 251 SGGA----ELWTIRG-DGPVAMRARVF 272 (273)
T ss_pred CCce----EEEEecC-Ccchhheeeec
Confidence 8864 2223333 56566666643
No 92
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=52.37 E-value=78 Score=22.08 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=58.0
Q ss_pred EEEEeeCCEEEEEEEeCCC---CcCccCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEE-EEEEee-cCC
Q psy7396 24 NILSAADGKCVAEMKISQE---HTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL-HITYIR-GAK 98 (145)
Q Consensus 24 ~v~~~~~~~~~~~~~~~~~---~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l-~i~fl~-pv~ 98 (145)
+|..++++.++++.+++|+ ..++.|.+-+=.-..++-.+++.........+.-++ -+..+.... ++.-+. ..+
T Consensus 27 ~VvtwdDd~~rc~atvsp~~a~~l~~dg~Lpa~~gIElmAQAv~vh~g~l~~rq~~ps--~r~GfLlg~Rkleaha~~l~ 104 (161)
T COG4706 27 DVVTWDDDSARCRATVSPSGAPFLDPDGNLPAWFGIELMAQAVGVHSGWLRHRQGKPS--IRLGFLLGARKLEAHAGILP 104 (161)
T ss_pred eeeeecCCeEEEEeEeCCCCCCccCcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCc--ccceeeeeeeeeeeeccccC
Confidence 5777889999999999987 446667666555555665555544432221110000 012222211 222222 335
Q ss_pred CCCEEEEEEEE-EecCceEEEEEEEEEECCCCcEEE
Q psy7396 99 IGEQIVIESST-KKCGKKLAFLDVLIKNKETGALVA 133 (145)
Q Consensus 99 ~g~~l~~~~~~-~~~gr~~~~~~~~i~~~~~g~~~a 133 (145)
.|+.+.+..+. ++-.+.....+|++.. +++..+
T Consensus 105 ~~q~ll~t~~e~iqddgg~g~f~csir~--d~~~~~ 138 (161)
T COG4706 105 AGQTLLITVKELIQDDGGFGSFECSIRN--DGEATG 138 (161)
T ss_pred CccchHHHHHHHhccCCCceEEEEEEcc--Cchhhc
Confidence 56655555444 4445568889999985 555444
No 93
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=50.28 E-value=60 Score=20.27 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEEeecCCCCCEEEEEEEEEecCce-EEEEEEEEEECCCCcEEEEEEEE
Q psy7396 91 ITYIRGAKIGEQIVIESSTKKCGKK-LAFLDVLIKNKETGALVATGVHT 138 (145)
Q Consensus 91 i~fl~pv~~g~~l~~~~~~~~~gr~-~~~~~~~i~~~~~g~~~a~a~~~ 138 (145)
|.-..|.+ |+.|.-.-++....+. -.++.+++.|. +|++++++..+
T Consensus 3 I~V~~P~p-g~~V~sp~~V~G~A~~FEgtv~~rv~D~-~g~vl~e~~~~ 49 (88)
T PF10648_consen 3 IWVTAPAP-GDTVSSPVKVSGKARVFEGTVNIRVRDG-HGEVLAEGFVT 49 (88)
T ss_pred eEEcCCCC-cCCcCCCEEEEEEEEEeeeEEEEEEEcC-CCcEEEEeeEE
Confidence 44455654 4444443333322221 34566677777 88888665544
No 94
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=47.26 E-value=67 Score=19.86 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.7
Q ss_pred CCCCEEEEEEEEEecCc-----eEEEEEEEEEECCCCcEEEEEEE
Q psy7396 98 KIGEQIVIESSTKKCGK-----KLAFLDVLIKNKETGALVATGVH 137 (145)
Q Consensus 98 ~~g~~l~~~~~~~~~gr-----~~~~~~~~i~~~~~g~~~a~a~~ 137 (145)
++||+|.+++-+..... ....+.+++.+. +|..+.+-..
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp-~g~~v~~~~~ 55 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDP-SGNEVFRWSV 55 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEET-TSEEEEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECC-CCCEEEEEEe
Confidence 56888888888776652 135677888888 8877766554
No 95
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=47.10 E-value=90 Score=21.28 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=32.6
Q ss_pred EEEEEEEEeecCCCCCEEEEEEEEEecC--ceEEEEEEEEEEC
Q psy7396 86 SVDLHITYIRGAKIGEQIVIESSTKKCG--KKLAFLDVLIKNK 126 (145)
Q Consensus 86 t~~l~i~fl~pv~~g~~l~~~~~~~~~g--r~~~~~~~~i~~~ 126 (145)
...++|.|-.||++|+++++.-+-++-- .....+.+..+-.
T Consensus 88 ~~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~ 130 (146)
T PF10989_consen 88 GRTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPP 130 (146)
T ss_pred CCEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECC
Confidence 5578999999999999999999777633 3567777777774
No 96
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=46.41 E-value=21 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=15.7
Q ss_pred eecCCCCCEEEEEEEEEecCc
Q psy7396 94 IRGAKIGEQIVIESSTKKCGK 114 (145)
Q Consensus 94 l~pv~~g~~l~~~~~~~~~gr 114 (145)
-+.+..|++++|++++.+.|+
T Consensus 41 pk~I~~GeTvEIR~~l~reG~ 61 (137)
T PF12988_consen 41 PKKIKKGETVEIRCELKREGN 61 (137)
T ss_dssp -SS--TTEEEEEEEEEEESS-
T ss_pred ccccCCCCEEEEEEEEecCce
Confidence 457788999999999999885
No 97
>PF11769 DUF3313: Protein of unknown function (DUF3313); InterPro: IPR021747 This a bacterial family of proteins which are annotated as putative lipoproteins.
Probab=38.92 E-value=1.4e+02 Score=21.24 Aligned_cols=82 Identities=18% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEE----EEEEEE---------ecCceEEEE
Q psy7396 53 GMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIV----IESSTK---------KCGKKLAFL 119 (145)
Q Consensus 53 G~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~----~~~~~~---------~~gr~~~~~ 119 (145)
-.+...++..+...+...... ..+++...+.+...|.=+.|..++.... -.+.++ +.+...+.+
T Consensus 75 ~~l~~~~~~~l~~~l~~~~~v---v~~pgp~~l~vr~aIt~~~~~~~~~~~~s~~~p~g~v~~~~~~~~g~~~~~g~~~v 151 (201)
T PF11769_consen 75 QQLANYFDRALCEALSKRFEV---VDKPGPGVLRVRAAITGVEPTAPDLSAYSEVIPIGLVIALAKSATGTRDGSGSLSV 151 (201)
T ss_pred HHHHHHHHHHHHHHHHhcCee---ccCCCCCeEEEEEEEEEeecCCCcccceeeeeccceeeecceeccCccccceeEEE
Confidence 344555666655555544221 1223566777888877777766543222 222232 567789999
Q ss_pred EEEEEECCCCcEEEEEEE
Q psy7396 120 DVLIKNKETGALVATGVH 137 (145)
Q Consensus 120 ~~~i~~~~~g~~~a~a~~ 137 (145)
+++++|..+|++++...-
T Consensus 152 e~e~~Da~tg~~laa~v~ 169 (201)
T PF11769_consen 152 EAELYDAQTGELLAAVVD 169 (201)
T ss_pred EEEEEecCCcceeeeeEe
Confidence 999999769999887654
No 98
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=37.49 E-value=1.3e+02 Score=20.54 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=36.8
Q ss_pred CCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEEEE
Q psy7396 98 KIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTK 139 (145)
Q Consensus 98 ~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~~~ 139 (145)
+.|..+.+.+.+-|...-...+.+.+.|-.+|+++......+
T Consensus 78 ~~GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 78 ELGADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred HcCCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 347789999999999999999999999988999998877654
No 99
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=36.19 E-value=85 Score=24.05 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=71.1
Q ss_pred eeeeecccccccccccceecceEEEEeeCCE-----EEEEEEeCCCCcCccCCchHHHHHHHHHHHhHHhhhhccccccc
Q psy7396 2 LYTALGKTTKNHLKDLFSYHQVNILSAADGK-----CVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEE 76 (145)
Q Consensus 2 ~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~~~~~~~~~n~~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~ 76 (145)
+|+-.|+|..+.+.-.....|+.+..+.+.. +.=.+.+.++.. =.+++|...+--|.|-|..+....+....
T Consensus 116 aYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgkrlk---lv~s~G~m~~~gd~AYGg~~Ea~lr~kDy 192 (273)
T PF11886_consen 116 AYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGKRLK---LVMSAGAMRGQGDVAYGGNLEATLRGKDY 192 (273)
T ss_pred EEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecCcEE---EEEEccEeeecCceeeceeEEEEeecCCC
Confidence 6888899988887766667788777765532 112222222211 12333333333455544444433332111
Q ss_pred cccccceeEEEEEE-EEEeecCCCCCEEEEEEEEEecCc-eEEEEEEEEEECCCCcEEEEEEE
Q psy7396 77 SSKISHSGVSVDLH-ITYIRGAKIGEQIVIESSTKKCGK-KLAFLDVLIKNKETGALVATGVH 137 (145)
Q Consensus 77 ~~~~~~~~vt~~l~-i~fl~pv~~g~~l~~~~~~~~~gr-~~~~~~~~i~~~~~g~~~a~a~~ 137 (145)
+. +....|..++ ++|.+-...|-.+.... +.|| +...+++.+-+...|++..+...
T Consensus 193 Pi--~~~~~tlglS~m~w~~d~alg~NlqSqf---~~gr~skm~v~anlNnk~~Gqisik~sS 250 (273)
T PF11886_consen 193 PI--GQDQSTLGLSLMKWRGDLALGANLQSQF---SVGRGSKMAVRANLNNKGTGQISIKTSS 250 (273)
T ss_pred CC--CCcceeeeeEeEecccCeEEeecceEee---ecCCCceEEEEecccCCccceEEEEecc
Confidence 11 3445566666 67776666664444333 3455 67788888888778888776654
No 100
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=32.29 E-value=86 Score=19.82 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=24.6
Q ss_pred EEEEEEEEEecCceEEEEEEEEEE-CCCCcEEEEEE
Q psy7396 102 QIVIESSTKKCGKKLAFLDVLIKN-KETGALVATGV 136 (145)
Q Consensus 102 ~l~~~~~~~~~gr~~~~~~~~i~~-~~~g~~~a~a~ 136 (145)
.+.+-++-++.|+-..-+++++++ . +|+++++++
T Consensus 14 ~~~v~v~~L~tg~Pv~ga~V~l~~~~-~~~~l~~g~ 48 (97)
T PF11974_consen 14 GLLVWVTSLSTGKPVAGAEVELYDSR-NGQVLASGK 48 (97)
T ss_pred CEEEEEeeCCCCCccCCCEEEEEECC-CCcEeeeee
Confidence 466666667777777777778877 6 777777765
No 101
>KOG1206|consensus
Probab=27.24 E-value=52 Score=24.87 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=39.5
Q ss_pred EEEEEeCCCCcCc---------cCCchHHHHHHHHHHHhHHhhhhccccccccccccceeEEEEEEEEEeecCCCCCEEE
Q psy7396 34 VAEMKISQEHTNT---------FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIV 104 (145)
Q Consensus 34 ~~~~~~~~~~~n~---------~g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~~~~~~~~vt~~l~i~fl~pv~~g~~l~ 104 (145)
++..+.+|-|.++ .-.+||-...++.--+++. +. .+.+-..+.++|..|+-+|++|.
T Consensus 169 rlsgD~NPLHiDPe~A~~agFetpilHGlc~lg~~~riv~a----~~----------~~a~y~~~kvrF~spV~pGdtll 234 (272)
T KOG1206|consen 169 RLSGDHNPLHIDPESALEAGFETPILHGLCTLGFSARIVGA----QF----------PPAVYKAQKVRFSSPVGPGDTLL 234 (272)
T ss_pred HhcCCCCccccCHHHHHhcCCCCchhhhHHHhhhhHHHHHH----hc----------CchhhheeeeeecCCCCCchhHH
Confidence 4555666666654 3479998888877654332 22 24567789999999999998654
Q ss_pred E
Q psy7396 105 I 105 (145)
Q Consensus 105 ~ 105 (145)
.
T Consensus 235 ~ 235 (272)
T KOG1206|consen 235 V 235 (272)
T ss_pred H
Confidence 3
No 102
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=27.23 E-value=1.5e+02 Score=18.01 Aligned_cols=25 Identities=16% Similarity=0.530 Sum_probs=20.4
Q ss_pred eeEEEEEEEEEeecCCCCCEEEEEE
Q psy7396 83 SGVSVDLHITYIRGAKIGEQIVIES 107 (145)
Q Consensus 83 ~~vt~~l~i~fl~pv~~g~~l~~~~ 107 (145)
..+....++.++.++++||.+.+.+
T Consensus 22 ~G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 22 CGIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CCeEEEEEEEeeCCCCCCCEEEEec
Confidence 3467788999999999999887765
No 103
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=26.57 E-value=77 Score=19.55 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=16.2
Q ss_pred cCceEEEEEEEEEECCCCcEEEEEEEEEE
Q psy7396 112 CGKKLAFLDVLIKNKETGALVATGVHTKY 140 (145)
Q Consensus 112 ~gr~~~~~~~~i~~~~~g~~~a~a~~~~~ 140 (145)
-|....++.+++.|+ +|.++.-...+|-
T Consensus 15 dg~d~~~i~v~v~D~-~Gnpv~~~~V~f~ 42 (92)
T smart00634 15 NGSDAITLTATVTDA-NGNPVAGQEVTFT 42 (92)
T ss_pred cCcccEEEEEEEECC-CCCCcCCCEEEEE
Confidence 345566666666666 6666555444443
No 104
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=23.41 E-value=1.3e+02 Score=17.06 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=17.8
Q ss_pred EEeecCCCCCEEEEEEEEEecCce
Q psy7396 92 TYIRGAKIGEQIVIESSTKKCGKK 115 (145)
Q Consensus 92 ~fl~pv~~g~~l~~~~~~~~~gr~ 115 (145)
.+...++.|+.+.+++++.+..++
T Consensus 40 ~~~~~l~~g~~v~v~G~v~~~~~~ 63 (75)
T PF01336_consen 40 RFREKLKEGDIVRVRGKVKRYNGG 63 (75)
T ss_dssp HHHHTS-TTSEEEEEEEEEEETTS
T ss_pred HHhhcCCCCeEEEEEEEEEEECCc
Confidence 344577889999999999877655
No 105
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=21.61 E-value=2.2e+02 Score=17.80 Aligned_cols=36 Identities=8% Similarity=0.256 Sum_probs=24.6
Q ss_pred EEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEEC
Q psy7396 90 HITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNK 126 (145)
Q Consensus 90 ~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~ 126 (145)
.++|-.=-..|....+.+++.+.|.+ ..++.+++|-
T Consensus 64 ~~~~~~w~~~gad~lv~G~v~~~g~~-~~v~~~L~Dv 99 (105)
T PF04052_consen 64 QVNFSDWRSLGADYLVTGSVTQSGNG-LRVEFRLYDV 99 (105)
T ss_dssp G--HHHHHTTT-SEEEEEEEEE-TTS-EEEEEEEEE-
T ss_pred CcCHHHHHHcCCCEEEEEEEEECCCE-EEEEEEEEec
Confidence 34444333457779999999999988 9999999984
No 106
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=21.58 E-value=2.6e+02 Score=18.60 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=30.4
Q ss_pred EEEEEEEEEeecCC--CCCEEEEEEEEEec-CceEEEEEEEEEEC
Q psy7396 85 VSVDLHITYIRGAK--IGEQIVIESSTKKC-GKKLAFLDVLIKNK 126 (145)
Q Consensus 85 vt~~l~i~fl~pv~--~g~~l~~~~~~~~~-gr~~~~~~~~i~~~ 126 (145)
....++++|+.|.+ .|....+.+++... ..+...+.+.+...
T Consensus 51 ~~l~V~t~~l~~~~~~~gslyq~iGEl~~~~~~~~~~L~ARV~r~ 95 (118)
T PF15490_consen 51 HSLKVDTKLLEPFQARVGSLYQFIGELEHQPQDGGIVLKARVLRC 95 (118)
T ss_pred cEEEEEeeEccccccCCCCEEEEEEEEEEEcCCCcEEEEEEEEEe
Confidence 45566777788876 78888888888887 56666777766543
No 107
>KOG4366|consensus
Probab=20.73 E-value=20 Score=26.02 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=45.6
Q ss_pred ceeEEEEEEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCCcEEEEEEE
Q psy7396 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVH 137 (145)
Q Consensus 82 ~~~vt~~l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g~~~a~a~~ 137 (145)
.+.+...-.+.|.+.+++=+.-.+..|++-...+.++++.......+|-++|-+..
T Consensus 100 ~~~v~~As~~ryrr~Irpfh~y~v~sRiI~WDekaiyle~rFv~~sd~fvcala~~ 155 (213)
T KOG4366|consen 100 GPYVQGASVFRYRREIRPFHPYSVSSRIICWDEKAIYLESRFVILSDGFVCALALT 155 (213)
T ss_pred CCeeechhhhhhhhhcCCCCccceeeEEEEEchhhhhhhhheeeccCceEeehHHH
Confidence 45566666688999999988999999999999999999999887757777765543
No 108
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.60 E-value=3.5e+02 Score=19.81 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=37.0
Q ss_pred EEEEEEeecCCCCCEEEEEEEEEecCce---EEEEEEEEEECCCCcEEEEEEEE
Q psy7396 88 DLHITYIRGAKIGEQIVIESSTKKCGKK---LAFLDVLIKNKETGALVATGVHT 138 (145)
Q Consensus 88 ~l~i~fl~pv~~g~~l~~~~~~~~~gr~---~~~~~~~i~~~~~g~~~a~a~~~ 138 (145)
.+++.|.++--.|+++.+...+...+.. .+.+++.++++ +|+.+.+-+..
T Consensus 99 GVdV~l~~~~y~~~~L~l~~~ltnqSsqsVv~Vel~v~l~d~-~G~~L~~e~v~ 151 (199)
T PF11355_consen 99 GVDVSLGASQYEDGQLGLPFSLTNQSSQSVVLVELEVTLFDD-SGQLLKTETVK 151 (199)
T ss_pred CeeEEEeccceeCCeEEEEEEEecCCCceEEEEEEEEEEEcC-CCCEeeEeeee
Confidence 4567777777778899999999887755 34456666787 99998876654
No 109
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=20.58 E-value=2.1e+02 Score=17.30 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=24.5
Q ss_pred EEEEEeecCCCCCEEEEEEEEEecCceEEEEEEEEEECCCC
Q psy7396 89 LHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETG 129 (145)
Q Consensus 89 l~i~fl~pv~~g~~l~~~~~~~~~gr~~~~~~~~i~~~~~g 129 (145)
++..==.+++.|.+.++. +..++....+.+++.+. +|
T Consensus 44 V~Cp~~~~~~~G~tf~C~---vt~~G~~~~v~Vtvt~~-dG 80 (80)
T PF14230_consen 44 VTCPGDLEVEVGATFTCT---VTVDGETQTVTVTVTDV-DG 80 (80)
T ss_pred eECCCCCcccCCceEEEE---EEeCCEEEEEEEEEECC-CC
Confidence 444433467778766655 33777788888888875 54
No 110
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=20.48 E-value=2e+02 Score=16.81 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.0
Q ss_pred ceEEEEEEEEEECCCCcEEEEEE
Q psy7396 114 KKLAFLDVLIKNKETGALVATGV 136 (145)
Q Consensus 114 r~~~~~~~~i~~~~~g~~~a~a~ 136 (145)
.+...+.+.+.+.++|++.|+..
T Consensus 30 ~~~~~vtV~V~~~~~G~L~A~v~ 52 (64)
T TIGR03786 30 TTVHTVTVTVTDDEQGKLVATVI 52 (64)
T ss_pred CCEEEEEEEEEECCCCcEEEEEE
Confidence 44677777787765788877654
No 111
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=20.15 E-value=1.7e+02 Score=25.89 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=76.1
Q ss_pred CeeeeecccccccccccceecceEEEEeeCCEEEEEEEeCCCCcCcc---CCchHHHHHHHHHHHhHHhhhhcccccccc
Q psy7396 1 ILYTALGKTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTF---GTLHGGMTATLVDYLSGCALLTHKNVMEES 77 (145)
Q Consensus 1 ~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~n~~---g~vhGG~l~~l~D~a~~~~~~~~~~~~~~~ 77 (145)
.+|+-.|+|....+.-....-|+.+..+.+.. ..-.++...+.=.. =.+++|...+-=|.|-|..+....+...-+
T Consensus 595 l~yt~r~etk~kn~~~n~t~~g~s~t~lg~~~-~~G~K~Ed~~~~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dyp 673 (763)
T TIGR00993 595 LAYTVRGETKFKNFRRNKTAAGLSVTFLGENV-STGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFP 673 (763)
T ss_pred eEEEEeccceecccccccccceeEEEEeccee-eeeeeehheeeeccceEEEEecceeeccCcccccceeEEEeecCcCC
Confidence 36888899988888766667788887776532 22233333332111 135555555556666555554433321111
Q ss_pred ccccceeEEEEEE-EEEeecCCCCCEEEEEEEEEecCc-eEEEEEEEEEECCCCcEEEEEEE
Q psy7396 78 SKISHSGVSVDLH-ITYIRGAKIGEQIVIESSTKKCGK-KLAFLDVLIKNKETGALVATGVH 137 (145)
Q Consensus 78 ~~~~~~~vt~~l~-i~fl~pv~~g~~l~~~~~~~~~gr-~~~~~~~~i~~~~~g~~~a~a~~ 137 (145)
. +....|..++ ++|.+-...|-.+.... ..|| +...+.+-+-+...|++..++..
T Consensus 674 ~--~~~~~tl~~s~~~w~~~~~l~~n~qsq~---~~gr~s~~~~~~~lnn~~~Gqi~ir~~s 730 (763)
T TIGR00993 674 L--GQDQSSLGLSLVDWRGDLALGANIQSQV---SIGRSSKLAARAGLNNKGSGQISVRTSS 730 (763)
T ss_pred C--CCCcchhceeeeccccceeeeccceeee---cccCCceEEEEecccCcccceEEEEecc
Confidence 1 3445566776 77777766664444433 3455 47778888877767887766543
Done!