RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7396
(145 letters)
>gnl|CDD|239527 cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric
acyl-CoA thioesterase with a hot dog fold and one of
several proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI
exist in archaea and eukaryotes, their function has not
been determined. Sequence similarity between PaaI, E.
coli medium chain acyl-CoA thioesterase II, and human
thioesterase III suggests they all belong to the same
thioesterase superfamily. The conserved fold present in
these thioesterases is referred to as an asymmetric hot
dog fold, similar to those of 4-hydroxybenzoyl-CoA
thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP
dehydratases (FabA/FabZ).
Length = 113
Score = 92.6 bits (231), Expect = 2e-25
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
++ G+ V + + H N G +HGG ATL D G A L+
Sbjct: 6 VVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSA-------LPPGALA 58
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V+VDL++ Y+R A+ G+ + + K G++LA ++V + + E G LVAT T +
Sbjct: 59 VTVDLNVNYLRPARGGD-LTARARVVKLGRRLAVVEVEVTD-EDGKLVATARGTFAV 113
>gnl|CDD|224961 COG2050, PaaI, HGG motif-containing thioesterase, possibly involved
in aromatic compounds catabolism [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 141
Score = 85.1 bits (211), Expect = 4e-22
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I +G+ A + + E N G LHGG+ A L D +G A + V
Sbjct: 28 IEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGV-------VALA 80
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143
V+++L+I ++R K + E+ G+++A +++ +KN E G LVA G T +
Sbjct: 81 VTLELNINFLRPVK-EGDVTAEARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLR 138
>gnl|CDD|239524 cd03440, hot_dog, The hotdog fold was initially identified in the
E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase) structure and subsequently in 4HBT
(4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A
number of other seemingly unrelated proteins also share
the hotdog fold. These proteins have related, but
distinct, catalytic activities that include metabolic
roles such as thioester hydrolysis in fatty acid
metabolism, and degradation of phenylacetic acid and the
environmental pollutant 4-chlorobenzoate. This
superfamily also includes the PaaI-like protein FapR, a
non-catalytic bacterial homolog involved in
transcriptional regulation of fatty acid biosynthesis.
Length = 100
Score = 61.7 bits (150), Expect = 2e-13
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 33 CVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHIT 92
V + ++ E + G +HGG+ L D +G A V++ L +
Sbjct: 1 FVLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARL-------GGRGLGAVTLSLDVR 53
Query: 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
++R + G+ + +E+ + G+ ++V ++N E G LVAT T
Sbjct: 54 FLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRN-EDGKLVATATAT 98
>gnl|CDD|217345 pfam03061, 4HBT, Thioesterase superfamily. This family contains a
wide variety of enzymes, principally thioesterases. This
family includes 4HBT (EC 3.1.2.23) which catalyzes the
final step in the biosynthesis of 4-hydroxybenzoate from
4-chlorobenzoate in the soil dwelling microbe
Pseudomonas CBS-3. This family includes various
cytosolic long-chain acyl-CoA thioester hydrolases.
Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA
to CoA and palmitate, they also catalyze the hydrolysis
of other long chain fatty acyl-CoA thioesters.
Length = 79
Score = 55.0 bits (133), Expect = 4e-11
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 47 FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIE 106
G +HGG+ L D +G A + V V+L+I ++R ++G+ + +E
Sbjct: 1 GGVVHGGVYLALADEAAGAAARSLG-------GSGQVVVVVELNIDFLRPVRLGDVLTVE 53
Query: 107 SSTKKCGKKLAFLDVLIKNKETG 129
+ + G+ A ++V +++++
Sbjct: 54 ARVVRLGRTSAVVEVEVRDEDGR 76
>gnl|CDD|161843 TIGR00369, unchar_dom_1, uncharacterized domain 1. Most proteins
containing this domain consist almost entirely of a
single copy of this domain. A protein from C. elegans
consists of two tandem copies of the domain. The domain
is also found as the N-terminal region of an apparent
initiation factor eIF-2B alpha subunit of Aquifex
aeolicus. The function of the domain is unknown.
Length = 117
Score = 46.2 bits (110), Expect = 2e-07
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 17 LFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCA----LLTHKN 72
L S+ + I DG A M + + FG+LHGG++A L D A +
Sbjct: 2 LVSFLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQA 61
Query: 73 VMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALV 132
V V ++L+ ++R A+ G+ + + G++ ++ I + E G L
Sbjct: 62 V-----------VGLELNANHLRPAREGK-VRAIAQVVHLGRQTGVAEIEIVD-EQGRLC 108
Query: 133 ATGVHTKYI 141
A T +
Sbjct: 109 ALSRGTTAV 117
>gnl|CDD|131339 TIGR02286, PaaD, phenylacetic acid degradation protein PaaD. This
member of the domain family TIGR00369 (which is, in
turn, a member of the pfam03061 thioesterase
superfamily) is nearly always found adjacent to other
genes of the phenylacetic acid degradation pathway. Its
function is currently unknown, but a role as a
thioesterase is not inconsistent with the proposed
overall pathway. Sequences scoring between trusted and
noise include those from archaea and other species not
known to catabolize phenylacetic acid and which are not
adjacent to other genes potentially involved with such a
pathway.
Length = 114
Score = 42.8 bits (101), Expect = 5e-06
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 23 VNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
++IL G M + + N GT HGG +L D S A +
Sbjct: 6 IDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLAD--SAFAYA--------CNSYGD 55
Query: 83 SGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVA 133
+ V+ I ++R + GE++ E+ G + DV + N+E G LVA
Sbjct: 56 AAVAAQCTIDFLRPGRAGERLEAEAVEVSRGGRTGTYDVEVVNQE-GELVA 105
>gnl|CDD|238329 cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
the final step in the 4-chlorobenzoate degradation
pathway in which 4-chlorobenzoate is converted to
4-hydroxybenzoate in certain soil-dwelling bacteria.
4HBT forms a homotetramer with four active sites. There
is no evidence to suggest that 4HBT is related to the
type I thioesterases functioning in primary or secondary
metabolic pathways. Each subunit of the 4HBT tetramer
adopts a so-called hot-dog fold similar to those of
beta-hydroxydecanoyl-ACP dehydratase, (R)-specific
enoyl-CoA hydratase, and type II, thioesterase (TEII).
Length = 110
Score = 36.8 bits (86), Expect = 7e-04
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 36 EMKISQEHTNTFGTLHGGMTATLVDYLSGC--ALLTHKNVMEESSKISHSG-VSVDLHIT 92
E+++ T+ G ++ A + Y L + + + G V V+L I
Sbjct: 4 EIRVRFGDTDAAGHVN---NARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEID 60
Query: 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
Y+R ++G+++ +E+ + G+K + I E G L+AT
Sbjct: 61 YLRPLRLGDRLTVETRVLRLGRKSFTFEQEIFR-EDGELLATA 102
>gnl|CDD|222021 pfam13279, 4HBT_2, Thioesterase-like superfamily. This family
contains a wide variety of enzymes, principally
thioesterases. These enzymes are part of the Hotdog fold
superfamily.
Length = 120
Score = 35.5 bits (82), Expect = 0.002
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSGC--ALLTHKNVMEESSKISHSGVSVDLHITYIRGAKI 99
+ G ++ A + Y L + E V V+ HI Y+R K+
Sbjct: 4 SDIDYNGHMN---NARYLRYFDEAREDFLARTGLGELLRAAGWGLVVVESHIRYLRELKL 60
Query: 100 GEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
G+++ + +K L+ I G L ATG
Sbjct: 61 GDELEVRLRLLDWDEKRFHLEHEIL-SVDGRLAATGEQV 98
>gnl|CDD|224523 COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].
Length = 157
Score = 35.3 bits (82), Expect = 0.003
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 24 NILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHS 83
+G+ V + TN GT+ GG L+ ++ A + +S+ +
Sbjct: 5 ETKELPEGELVLRTLVMPSDTNPNGTIFGG---WLLSWMDLAAAIA-------ASRHAGG 54
Query: 84 GV---SVDLHITYIRGAKIGEQIVIESSTKKCGK 114
V SVD + + + ++G+ + + + G+
Sbjct: 55 RVVTASVD-SVDFKKPVRVGDIVCLYARVVYTGR 87
>gnl|CDD|183276 PRK11688, PRK11688, hypothetical protein; Provisional.
Length = 154
Score = 34.4 bits (80), Expect = 0.007
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 50 LHGGMTATLVDYLSGCA-----LLTHKNVMEES--SKISHSGVSVDLHITYIR-GAKIGE 101
LHGG+ A+++D G L H+++ EE ++S G ++DL + Y+R G GE
Sbjct: 58 LHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLG-TIDLRVDYLRPG--RGE 114
Query: 102 QIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143
+ SS + G K+A + + N E G +A+G T Y+ G
Sbjct: 115 RFTATSSVLRAGNKVAVARMELHN-EQGVHIASGTAT-YLVG 154
>gnl|CDD|223894 COG0824, FcbC, Predicted thioesterase [General function prediction
only].
Length = 137
Score = 29.9 bits (68), Expect = 0.26
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
+ V V+ I Y+R A++G+ + + + ++ G K L I N L+ATG T +
Sbjct: 55 IAFVVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVN--EDELLATG-ETTLV 111
Query: 142 A 142
Sbjct: 112 C 112
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 28.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 72 NVMEESSKISHSGVSVDLHITYIRGAKIGEQI 103
+ E K S SGV I Y R A+I EQ+
Sbjct: 1300 QFVTEKRKASISGVQRQFRIGYNRAARIIEQM 1331
>gnl|CDD|182337 PRK10254, PRK10254, thioesterase; Provisional.
Length = 137
Score = 27.6 bits (61), Expect = 1.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 30 DGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCA--LLTHKN---VMEESSKISHSG 84
D AEM + FG LHGG +A L + L A L+T V E + H
Sbjct: 33 DDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRP 92
Query: 85 VS 86
VS
Sbjct: 93 VS 94
>gnl|CDD|177210 MTH00153, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 28.3 bits (64), Expect = 1.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 77 SSKISHSGVSVDLHI 91
SS I+HSG SVDL I
Sbjct: 131 SSNIAHSGASVDLAI 145
>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA
dehydrogenase/thioesterase; Validated.
Length = 495
Score = 28.6 bits (64), Expect = 1.4
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 66 ALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC-GKKLAFLDVLIK 124
ALL V HS +V+ HI ++ AK G+ + +E+ K+L L
Sbjct: 378 ALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTL-- 435
Query: 125 NKETGALVATGVH 137
G L+AT H
Sbjct: 436 YDAGGELIATAEH 448
>gnl|CDD|239526 cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT). Brain
acyl-CoA hydrolase (BACH). These enzymes deacylate
long-chain fatty acids by hydrolyzing acyl-CoA
thioesters to free fatty acids and CoA-SH. Eukaryotic
members of this family are expressed in brain, testis,
and brown adipose tissues. The archeal and eukaryotic
members of this family have two tandem copies of the
conserved hot dog fold, while most bacterial members
have only one copy.
Length = 123
Score = 27.1 bits (61), Expect = 2.1
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 28 AADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGV-- 85
D + + E TN GT+ GG +D L+G A + + + V
Sbjct: 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIA----------AYRHAGGRVVT 52
Query: 86 -SVDLHITYIRGAKIGEQIVIESS 108
SVD I +++ ++G+ + + +
Sbjct: 53 ASVD-RIDFLKPVRVGDVVELSAR 75
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 27.8 bits (62), Expect = 2.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 69 THKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKC 112
T K VM E SK SH +TY+ A IG + I T C
Sbjct: 353 TKKIVMGEGSKASH--------LTYLGDATIGRNVNIGCGTITC 388
>gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate
decarboxylase/orotate phosphoribosyltransferase protein;
Validated.
Length = 477
Score = 27.7 bits (62), Expect = 2.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 48 GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSV 87
G H G T +VD + L+T K+VME + K+ +G++V
Sbjct: 388 GNFHPGETVVVVDDI----LITGKSVMEGAEKLKSAGLNV 423
>gnl|CDD|238833 cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I.
Cytochrome c oxidase (CcO), the terminal oxidase in the
respiratory chains of eukaryotes and most bacteria, is a
multi-chain transmembrane protein located in the inner
membrane of mitochondria and the cell membrane of
prokaryotes. It catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane. The
number of subunits varies from three to five in bacteria
and up to 13 in mammalian mitochondria. Only subunits I
and II are essential for function, but subunit III,
which is also conserved, may play a role in assembly or
oxygen delivery to the active site. Subunits I, II, and
III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunit I contains a
heme-copper binuclear center (the active site where O2
is reduced to water) formed by a high-spin heme (heme
a3) and a copper ion (CuB). It also contains a low-spin
heme (heme a), believed to participate in the transfer
of electrons to the binuclear center. For every
reduction of an O2 molecule, eight protons are taken
from the inside aqueous compartment and four electrons
are taken from cytochrome c on the opposite side of the
membrane. The four electrons and four of the protons
are used in the reduction of O2; the four remaining
protons are pumped across the membrane. This charge
separation of four charges contributes to the
electrochemical gradient used for ATP synthesis. Two
proton channels, the D-pathway and K-pathway, leading to
the binuclear center have been identified in subunit I.
A well-defined pathway for the transfer of pumped
protons beyond the binuclear center has not been
identified. Electrons are transferred from cytochrome c
(the electron donor) to heme a via the CuA binuclear
site in subunit II, and directly from heme a to the
binuclear center.
Length = 488
Score = 26.7 bits (60), Expect = 5.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 77 SSKISHSGVSVDLHI 91
SS ++HSG SVDL I
Sbjct: 124 SSILAHSGPSVDLAI 138
>gnl|CDD|218361 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3. RNA
polymerases catalyze the DNA dependent polymerisation
of RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 3, represents the pore domain. The 3'
end of RNA is positioned close to this domain. The pore
delimited by this domain is thought to act as a channel
through which nucleotides enter the active site and/or
where the 3' end of the RNA may be extruded during
back-tracking.
Length = 158
Score = 25.7 bits (57), Expect = 7.5
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 20/50 (40%)
Query: 24 NILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNV 73
NILS +GK + + SQ D + G LLT ++
Sbjct: 1 NILSPQNGKPI--IGPSQ------------------DMVLGLYLLTRRDT 30
>gnl|CDD|240715 cd12269, RRM_Vip1_like, RNA recognition motif in a group of
uncharacterized plant proteins similar to fission yeast
Vip1. This subfamily corresponds to the Vip1-like,
uncharacterized proteins found in plants. Although
their biological roles remain unclear, these proteins
show high sequence similarity to the fission yeast
Vip1. Like Vip1 protein, members in this family contain
an N-terminal RNA recognition motif (RRM), also termed
RBD (RNA binding domain) or RNP (ribonucleoprotein
domain). .
Length = 69
Score = 24.7 bits (54), Expect = 8.1
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 21/78 (26%)
Query: 8 KTTKNHLKDLFSY----HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLS 63
K T+ + D FS+ V I + + A + TF T
Sbjct: 9 KATERDIYDFFSFSGDIEYVEIQRSGEQSQTAYV--------TFKDPQAQET-------- 52
Query: 64 GCALLTHKNVMEESSKIS 81
LL+ ++++S I+
Sbjct: 53 -ALLLSGATIVDQSVTIT 69
>gnl|CDD|214431 MTH00142, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 26.2 bits (58), Expect = 8.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 77 SSKISHSGVSVDLHI 91
SS ++HSG SVDL I
Sbjct: 131 SSNLAHSGGSVDLAI 145
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 26.0 bits (57), Expect = 8.8
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 3 YTALGKTTK----NHLKDLFSYHQVNILSAADGKCVAEMKIS--QEHTNTFGTLHGGMTA 56
Y + GKT + L + F+ + + L G VA M + Q TFG L G+T
Sbjct: 44 YHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103
Query: 57 TLVDYLSGCALLTHKNVMEESSKI 80
V+ L L H+ + +S +
Sbjct: 104 VNVNPLYTPRELKHQLIDSGASVL 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,833,117
Number of extensions: 570828
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 28
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)