RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7396
(145 letters)
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC
COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A* 2cy9_A
Length = 148
Score = 118 bits (297), Expect = 4e-35
Identities = 60/122 (49%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 22 QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
++ ++SAA GK + EMK+ +EHTN GTLHGG+TATLVD +S ALL +
Sbjct: 27 KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER--------G 78
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
GVSVD++ITY+ AK+GE IVI + K GK LAF V + NK TG L+A G HTK++
Sbjct: 79 APGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 138
Query: 142 AG 143
Sbjct: 139 GN 140
>2h4u_A Thioesterase superfamily member 2; structural genomics, structural
genomics consortium, SGC, hydrolase; 2.20A {Homo
sapiens} SCOP: d.38.1.5
Length = 145
Score = 117 bits (295), Expect = 7e-35
Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 8/120 (6%)
Query: 23 VNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
+ ++SAA GK + EMK+ +EHTN GTLHGG+TATLVD +S ALL +
Sbjct: 33 ITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER--------GA 84
Query: 83 SGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142
GVSVD++ITY+ AK+GE IVI + K GK LAF V + NK TG L+A G HTK++
Sbjct: 85 PGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 144
>3lbe_A Putative uncharacterized protein SMU.793; hypothetical protein,
unknown function; HET: COA; 1.70A {Streptococcus mutans}
PDB: 3lbb_A*
Length = 163
Score = 103 bits (257), Expect = 5e-29
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 7 GKTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCA 66
G + NHL ++ + +++S G + ++ + N +G HGG TL D +SG
Sbjct: 33 GSMSDNHLHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLV 92
Query: 67 LLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNK 126
++ V++ I Y++ K+G+ ++I+ G+ +DV + N
Sbjct: 93 SISTG----------FDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTN- 141
Query: 127 ETGALVATGVHTKYIAG 143
+ VA T ++ G
Sbjct: 142 QLKQEVAKATFTMFVTG 158
>2qwz_A Phenylacetic acid degradation-related protein; putative
thioesterase, structural genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter
SP}
Length = 159
Score = 99.9 bits (249), Expect = 7e-28
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I + A G+ + + + H GT+ G L D +L H
Sbjct: 46 IDALAKGEITMRLNVQERHLRPGGTVSGPSMFALADVSVYALVLAHLGREA-------LA 98
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V+ + + ++R + G ++ ++ K G+ LA D+L+ ++ A VA T I
Sbjct: 99 VTTNASLDFMRKPESGRDLLGQARLLKLGRTLAVGDILLFSEGMEAPVARSTMTYSI 155
>1wlu_A PAAI protein, phenylacetic acid degradation protein PAAI;
thioesterase, hot DOG fold, S genomics; 1.45A {Thermus
thermophilus HB8} SCOP: d.38.1.5 PDB: 1j1y_A 1wlv_A*
1wm6_A 1wn3_A* 2dsl_A
Length = 136
Score = 88.2 bits (219), Expect = 1e-23
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 14 LKDLFSYH-QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKN 72
++D F + +L A G+ V ++ +H N GT HGG L D A T
Sbjct: 1 MRDPFMEALGLKVLHLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGP 60
Query: 73 VMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALV 132
V++ + Y R G ++ + ++ A V + ++ G LV
Sbjct: 61 A-----------VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSE--GKLV 107
Query: 133 ATGVHTKYI 141
A T +
Sbjct: 108 ALFTGTVFR 116
>2fs2_A Phenylacetic acid degradation protein PAAI; operon, structural
genomics, PSI, protein structure initiative; 2.00A
{Escherichia coli} SCOP: d.38.1.5 PDB: 1psu_A
Length = 151
Score = 86.4 bits (214), Expect = 9e-23
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I+S +G V M ++ + N + HGG +L D A + +
Sbjct: 27 IISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG----------LAA 76
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143
V+ I ++R G+ + + + GK+ D+ I N + VA + G
Sbjct: 77 VASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN-QQQKTVALFRGKSHRIG 134
>2hbo_A Hypothetical protein (NP_422103.1); thioesterase/thiol ester
dehydrase-isomerase fold, structura genomics; HET: MSE
PE4; 1.85A {Caulobacter vibrioides} SCOP: d.38.1.5
Length = 158
Score = 86.6 bits (214), Expect = 1e-22
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
G+ ++ + HTN G HGGM + D G + K+ +S
Sbjct: 36 EHREGPGQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKS---------YSW 86
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGV 136
V+V L ++ GAK+G+ + E L + I E + TGV
Sbjct: 87 VTVRLMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGV 138
>3dkz_A Thioesterase superfamily protein; Q7W9W5, borpa, PF03061, NESG,
BPR208C, structural genomics, PSI-2, protein structure
initiative; 2.40A {Bordetella parapertussis}
Length = 142
Score = 81.6 bits (202), Expect = 5e-21
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
+ +G + + N+ G +HGG +++D+ G A+
Sbjct: 23 PEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTP--------EVGV 74
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
++D++ +++ + +VIE+ + G +AF + I++ G LVA T I
Sbjct: 75 ATIDMNTSFMSPGR--GDLVIETRCLRRGASIAFCEGEIRD-SAGELVAKATATFKI 128
>2pim_A Phenylacetic acid degradation-related protein; thioesterase
superfamily, phenylacetic acid degradation-RELA protein;
2.20A {Ralstonia eutropha JMP134}
Length = 141
Score = 80.5 bits (199), Expect = 2e-20
Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 22 QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
+ + G ++ + N G + GGM ++D ++ + +
Sbjct: 28 VIRAVDLEAGSLESDYVATDAFLNPVGQVQGGMLGAMLDDVTAMLVTAT-------LEDG 80
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
S +++L+++++R A+ G + + ++ G+ + + + G LVAT T +
Sbjct: 81 ASCSTLNLNLSFLRPAQAGL-LRGRARLERRGRNVCNVVGELSQD--GKLVATATATCMV 137
>3nwz_A BH2602 protein; structural genomics, PSI-biology, protein structure
initiati northeast structural genomics consortium, NESG,
unknown FUN; HET: COA; 2.57A {Bacillus halodurans}
Length = 176
Score = 78.7 bits (194), Expect = 2e-19
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
DG+ + I N +HGG+TATL+D G + + + S
Sbjct: 56 SQEREDGRFEVRLPIGPLVNNPLNMVHGGITATLLDTAMGQMVNRQ---LPD----GQSA 108
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
V+ +L+I Y++ G + +S GK+ ++ + + G VA G +
Sbjct: 109 VTSELNIHYVKPGM-GTYLRAVASIVHQGKQRIVVEGKVYT-DQGETVAMGTGS 160
>3e1e_A Thioesterase family protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Silicibacter pomeroyi}
Length = 141
Score = 77.1 bits (190), Expect = 3e-19
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I + G+ M + T G LH G+ +T++D G A + MEE + +
Sbjct: 28 IDTLLPGRVELCMPYDRALTQQHGFLHAGIVSTVLDSACGYAAFSL---MEEEAAV---- 80
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFL--DVLIKNKETGALVATGVHT 138
++V+ + ++ A+ GE+ + K G+ L +AT T
Sbjct: 81 LTVEFKVNFLNPAE-GERFAFRAEVVKPGRTLTVATATAYAFRDGEERAIATMTAT 135
>1zki_A Hypothetical protein PA5202; structural genomics, PSI, protein ST
initiative, midwest center for structural genomics,
MCSG, U function; 1.70A {Pseudomonas aeruginosa} SCOP:
d.38.1.5
Length = 133
Score = 74.7 bits (184), Expect = 2e-18
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
+S DG + ++ N G +HGG +L+D G A + +
Sbjct: 24 PVSLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSS---HGFDRQS---- 76
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143
V+++ I YIR GE + + G++ ++ ++ + LVA G T G
Sbjct: 77 VTLECKINYIRAVADGE-VRCVARVLHAGRRSLVVEAEVRQGDK--LVAKGQGTFAQLG 132
>3s4k_A Putative esterase RV1847/MT1895; seattle structural genomics center
for infectious disease, S hydrolase; 1.70A
{Mycobacterium tuberculosis}
Length = 144
Score = 74.2 bits (182), Expect = 6e-18
Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
A++ + + G +HGG+ +++ ++ A N E +
Sbjct: 29 FTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV---- 84
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V V+ + ++R G + + G++ V I + +T +VA G
Sbjct: 85 VGVNNNTDFVRSISSGM-VYGTAEPLHRGRRQQLWLVTITD-DTDRVVARGQVRLQN 139
>3f1t_A Uncharacterized protein Q9I3C8_pseae; PAR319A, NESG, structural
genomics, PSI-2, Pro structure initiative; HET: MSE;
2.20A {Pseudomonas aeruginosa}
Length = 148
Score = 73.8 bits (181), Expect = 9e-18
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTF--GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
+ +A + + SQ G +HGG TL+D G + + + +
Sbjct: 27 VEAADEKGLTLRLPYSQAIIGNPESGVVHGGAITTLMDTTCGISTVCV---LPDF----E 79
Query: 83 SGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
++DL I Y+ A+ + + + + + F + G +A V
Sbjct: 80 ICPTLDLRIDYMHPAEPHKDVYGFAECYRVTPNVIFTRGFAYQDDPGQPIAHVVGA 135
>3gek_A Putative thioesterase YHDA; structure genomics, NESG, KR113,
Q9CHK5_lacla, lactococcus L YHDA, structural genomics,
PSI-2; 2.24A {Lactococcus lactis subsp}
Length = 146
Score = 73.6 bits (180), Expect = 1e-17
Identities = 19/125 (15%), Positives = 44/125 (35%), Gaps = 8/125 (6%)
Query: 17 LFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEE 76
+F+ + + K ++M +S H G L+GG + L + +G A +
Sbjct: 14 VFTDENSDKFVSKIYKFSSKMILSDFHAQPQGFLNGGASLALAEITAGMASNAIGSG--- 70
Query: 77 SSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGV 136
+ ++ ++ K + K GK+ ++ I + E L++
Sbjct: 71 ----QYFAFGQSINANHLNPKKCEGFVNARGLLLKNGKRNHVWEIKITD-ENETLISQIT 125
Query: 137 HTKYI 141
+
Sbjct: 126 VVNAL 130
>3e29_A Uncharacterized protein Q7WE92_borbr; Q7WE92 NESG, structural
genomics, PSI-2, Pro structure initiative; 2.40A
{Bordetella bronchiseptica}
Length = 144
Score = 70.9 bits (174), Expect = 9e-17
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 25 ILSAADGKCVAEMKISQEHTNTF--GTLHGGMTATLVDYLSGCALLTHKNVMEESSKISH 82
+L A + V +K +E ++ + HGG+ ATLVD A+ H
Sbjct: 26 VLEAGEQGIVLGIKWREELISSPEIRSTHGGILATLVDAAGDYAVALKTG---------H 76
Query: 83 SGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
++D+H+ Y R A + E GK+ A + + G LVA+G
Sbjct: 77 PVPTMDMHVDYHRVAT-PGDLRAEGQVIHFGKRFATAHARVLD-MDGNLVASGRAL 130
>1q4t_A Thioesterase; hot-DOG, hydrolase; HET: 4CO; 1.60A {Arthrobacter SP}
SCOP: d.38.1.5 PDB: 1q4s_A* 1q4u_A* 3r37_A* 3r36_B*
3r3d_A* 3r34_A* 3r35_A* 3r3f_A* 3r32_A* 3r3a_A* 3r3b_A*
3r3c_A*
Length = 151
Score = 69.3 bits (169), Expect = 5e-16
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 8/117 (6%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I + A ++++ +G +HGG L + L+ A + +
Sbjct: 38 IDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEA------TVAVVHEKGMMA 91
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V H ++ R K G + E+ G F DV +++ + G L A + +
Sbjct: 92 VGQSNHTSFFRPVKEGH-VRAEAVRIHAGSTTWFWDVSLRD-DAGRLCAVSSMSIAV 146
>1vh5_A Hypothetical protein YDII; PSI, protein structure initiative, NEW
YORK SGX research center for structural genomics,
nysgxrc; 1.34A {Escherichia coli} SCOP: d.38.1.5 PDB:
1vi8_A 1sbk_A
Length = 148
Score = 68.8 bits (168), Expect = 8e-16
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 9/117 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
D A M + FG LHGG + L + + A
Sbjct: 30 FEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGE-------QKV 82
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V ++++ ++R A+ G + G + + I + E G L + T I
Sbjct: 83 VGLEINANHVRSAREGR-VRGVCKPLHLGSRHQVWQIEIFD-EKGRLCCSSRLTTAI 137
>1o0i_A Hypothetical protein HI1161; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.70A {Haemophilus influenzae} SCOP:
d.38.1.5 PDB: 1sc0_A 2b6e_A 3lz7_A
Length = 138
Score = 66.7 bits (163), Expect = 4e-15
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I + + A M + FG LHGG++ L + + A +
Sbjct: 28 ISAFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLCLEE-------GKTV 80
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V +D++ ++R + G+ + ++ G+ + + I+ E L T +
Sbjct: 81 VGLDINANHLRPVRSGK-VTARATPINLGRNIQVWQIDIRT-EENKLCCVSRLTLSV 135
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural
genomics, PSI-2, structure initiative; HET: MSE; 1.90A
{Rhodococcus SP} SCOP: d.38.1.5
Length = 216
Score = 67.4 bits (164), Expect = 9e-15
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 21 HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKI 80
V + +DG + ++ + G +HGG++A L+D++ G A
Sbjct: 100 PPVVLEGLSDGSVRGTVTLTIPYQGPPGHVHGGVSALLLDHVLGVANAWGG--------- 150
Query: 81 SHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+G++ L Y R + E + + + I+ + G + +
Sbjct: 151 -KAGMTAQLSTRYHRPTPLFEPLTLTGKLMSVDGRKITTAGDIRTAD-GQVCVSV 203
>1vh9_A P15, hypothetical protein YBDB; structural genomics, unknown
function; 2.15A {Escherichia coli} SCOP: d.38.1.5
Length = 149
Score = 65.7 bits (160), Expect = 1e-14
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
D AEM + FG LHGG +A L + L A ++
Sbjct: 30 YTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMM-------TRDGQCV 82
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V +L+ T+ R G+ + G++ ++++ + E G T +
Sbjct: 83 VGTELNATHHRPVSEGK-VRGVCQPLHLGRQNQSWEIVVFD-EQGRRCCTCRLGTAV 137
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Shewanella oneidensis}
Length = 164
Score = 65.4 bits (159), Expect = 2e-14
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 25 ILSAADGKCVAEMKISQEHTNTF--GTLHGGMTATLVDYLSGCALLTH------KNVMEE 76
I + + E LHGG+TAT++D + G +EE
Sbjct: 41 IKRYDIDGVEVAINMKPELIGNIHQQILHGGVTATVLDVVGGLTAFAGLVASRDDWTIEE 100
Query: 77 SSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGV 136
+ + ++D+ + Y+R + G+ S + G +++ + + N E G +A G
Sbjct: 101 LQQRLQTLGTIDMRVDYLRPGR-GQIFTGTGSVIRAGNRVSVCRMELHN-EQGTHIAFGT 158
Query: 137 HT 138
T
Sbjct: 159 GT 160
>4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A
{Homo sapiens}
Length = 211
Score = 65.8 bits (160), Expect = 3e-14
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 30 DGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL 89
+ + V + G +HGG AT++D G + ++ +L
Sbjct: 102 EKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAG----------GIVMTANL 151
Query: 90 HITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+I Y R + ++I S K + F+ +++ + L +
Sbjct: 152 NINYKRPIPLCSVVMINSQLDKVEGRKFFVSCNVQSVDEKTLYSEA 197
>3hdu_A Putative thioesterase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus
SB}
Length = 157
Score = 64.6 bits (157), Expect = 4e-14
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 25 ILSAADGKCVAEMKISQEHTNTF--GTLHGGMTATLVDYLSGCALLTH------KNVMEE 76
+ + + ++ E L+GG+ ++ +D +G A MEE
Sbjct: 34 VRFISPEQVKLSFEMRDELIGNAIRRMLYGGVISSAIDMTAGLAAFMGFQEKMSGKPMEE 93
Query: 77 SSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGV 136
+ ++ LH+ Y+R G + V + G K+A + + N + L+A G
Sbjct: 94 KLAMIGRLSTMSLHVEYLRPGL-GREFVCTGYNVRTGNKVAVIRTELMN-DQDELIAVGS 151
Query: 137 HT 138
+
Sbjct: 152 VS 153
>4ae7_A Thioesterase superfamily member 5; hydrolase, hotdog-fold; 1.45A
{Homo sapiens}
Length = 220
Score = 64.3 bits (156), Expect = 1e-13
Identities = 14/115 (12%), Positives = 33/115 (28%), Gaps = 10/115 (8%)
Query: 21 HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKI 80
V K V + G HGG A ++D
Sbjct: 101 EYVIFFQPTQKKSVCLFQPGSYLEGPPGFAHGGSLAAMMDETFSKTAFLAG--------- 151
Query: 81 SHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
++ L+I + + +V++ K + ++ + +++ + A
Sbjct: 152 -EGLFTLSLNIRFKNLIPVDSLVVMDVEVDKIEDQKLYMSCIAHSRDQQTVYAKS 205
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural
genomics, unknown funct; 1.94A {Pyrococcus horikoshii}
SCOP: d.38.1.5
Length = 131
Score = 61.8 bits (150), Expect = 2e-13
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 25 ILSAADGKCVAEMKISQEHT-NTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHS 83
+ +G E++ E + G +HGG T L DY + A+ +
Sbjct: 20 PILIKEGYAEVELETIDEMKVDEKGLVHGGFTFGLADYAAMLAVN------------EPT 67
Query: 84 GVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
V + + + K+G+++V ++ + K ++V + +E +V G
Sbjct: 68 VVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEE--VVLEG 117
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP:
d.38.1.5
Length = 154
Score = 58.4 bits (141), Expect = 7e-12
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 17 LFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEE 76
+ G M + N G+++ G TL + G LT +
Sbjct: 20 FVQRSGLRAEVLEPGYVRLRMPG-AGNENHIGSMYAGALFTLAELPGGALFLTSFD---- 74
Query: 77 SSKISHSGVSVDLHITYIRGAK--------IGEQIV--IESSTKKCGKKLAFLDVLIKNK 126
+ ++ + + R AK + + + +E+ + GK L++ + +
Sbjct: 75 --SARFYPIVKEMTLRFRRPAKGDIRVEARLDAERIRQLETEAGERGKAEYSLELQLTD- 131
Query: 127 ETGALVATGVHTKYI 141
E G +VA +
Sbjct: 132 EQGEVVAESAALYQL 146
>2prx_A Thioesterase superfamily protein; ZP_00837258.1, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; 1.50A {Shewanella loihica}
Length = 160
Score = 53.1 bits (127), Expect = 8e-10
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 30 DGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVME----ESSKISHSGV 85
+ +A HT G ++GG+ A+L+D + E V
Sbjct: 37 GEQTIAHFMPKPFHTAIPGFVYGGLIASLIDCHGTGSASAAAQRALEQAGEQLDEPPRFV 96
Query: 86 SVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+ L+I Y+ +G ++ + K+ + +++ + G L A G
Sbjct: 97 TAALNIDYLAPTPMGVELELVGEIKEVKPRKVVVEIALSAD--GKLCARG 144
>3lw3_A HP0420 homologue; hotdog-fold, structural genomics, unknown
function; 1.60A {Helicobacter felis} PDB: 3lwg_A
Length = 145
Score = 48.3 bits (115), Expect = 4e-08
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 12/103 (11%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
++S GK + + +H G + + CAL N +
Sbjct: 30 LISFGSGKATVCLTPKEFMLCEDDVVHAGFIVGAASFAALCAL----N--------KKNS 77
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKE 127
+ + + + +I ++I ++ K + + V + E
Sbjct: 78 LISSMKVNLLAPIEIKQEIYFNATITHTSSKKSTIRVEGEFME 120
>1yoc_A Hypothetical protein PA1835; structural genomics, PSI, protein
structure initiati midwest center for structural
genomics, MCSG, sulfur SAD; 1.70A {Pseudomonas
aeruginosa} SCOP: d.38.1.5
Length = 147
Score = 46.9 bits (111), Expect = 1e-07
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 8/125 (6%)
Query: 17 LFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEE 76
F+ + G +E N GT+H + +G
Sbjct: 28 YFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDA------- 80
Query: 77 SSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGV 136
S H + + + Y+ A G+ + ++ + L V + V
Sbjct: 81 SIPAGHRWIPRGMTVEYLAKAT-GDVRAVADGSQIDWQATGNLVVPVVAYVDDKPVFRAE 139
Query: 137 HTKYI 141
T Y+
Sbjct: 140 ITMYV 144
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function;
HET: MSE; 2.60A {Campylobacter jejuni}
Length = 152
Score = 37.6 bits (87), Expect = 4e-04
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 25 ILSAADGKCVAEMKISQEHT-NTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHS 83
I+ + + + E + G + +Y++ ++ N
Sbjct: 39 IIEIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASI----N--------KEF 86
Query: 84 GVSVDLHITYIRGAKIGEQIVIESS--TKKCGKKLAFLDVLIKNKE 127
V + + K+G+ + +E+ + KK + V+ KE
Sbjct: 87 SVIIGSKCFFYAPLKLGDVLELEAHALFDETSKK-RDVKVVGHVKE 131
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein
structure initiative, PSI, midwest center for structural
GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP:
d.38.1.1
Length = 174
Score = 37.3 bits (87), Expect = 6e-04
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 20/105 (19%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
N TL GG + +D ++ A S+ S S+D + ++
Sbjct: 29 TDLNDHNTLFGGKILSEMDMVASISA-----------SRHSRKECVTASMD-WVDFLHPV 76
Query: 98 KIGEQIVIESSTKKCGKKLA--FLDVLIKNKETGA--LVATGVHT 138
+ + + ES G+ F+ V+ + +G + AT T
Sbjct: 77 RSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKRIAATSFVT 121
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP:
d.38.1.1 PDB: 3sps_A
Length = 169
Score = 36.5 bits (85), Expect = 8e-04
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 20/105 (19%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
TN GT+ GG +D ++ A K ++S V S+D + + A
Sbjct: 33 PDTNHLGTIFGGKVLAYIDEIAALTA-----------MKHANSAVVTASID-SVDFKSSA 80
Query: 98 KIGEQIVIESSTKKCGKKLA--FLDVLIKNKETGA--LVATGVHT 138
+G+ + +E G+ ++ V N TG L T
Sbjct: 81 TVGDALELEGFVTHTGRTSMEVYVRVHSNNLLTGERTLTTESFLT 125
>2q2b_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain; 2.50A {Mus musculus}
Length = 179
Score = 35.8 bits (83), Expect = 0.002
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
G +HGG+T L+D ++G A ++ + + SVD I +
Sbjct: 36 SDCTLHGFVHGGVTMKLMDEVAGIVA-----------ARHCKTNIVTASVD-AINFHDKI 83
Query: 98 KIGEQIVIESSTKKCGKK 115
+ G I I K
Sbjct: 84 RKGCVITISGRMTFTSNK 101
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national
project on protein struc functional analyses; HET: COA;
2.10A {Thermus thermophilus}
Length = 133
Score = 34.9 bits (81), Expect = 0.003
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
TN +GTL GG +D + A ++ + V D + + R
Sbjct: 13 GETNHYGTLFGGTVLAWMDQAAFVAA-----------TRHARKKVVTVHAD-AVDFKRPV 60
Query: 98 KIGEQIVIESSTKKCGKK--LAFLDVLIKNKETGA---LVATGVHT 138
+G + + + K+ G+ +++ ++ + G L A G
Sbjct: 61 PLGAIVELVARLKEVGRTSMRVEVEMWVEPVKEGEEAYLAARGGFV 106
>2qq2_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain, thioesterase, structural genomics, structural
genomics consortium, SGC; 2.80A {Homo sapiens}
Length = 193
Score = 35.1 bits (81), Expect = 0.003
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
G +HGG+T L+D ++G A ++ + + SVD I +
Sbjct: 52 SDCTLHGFVHGGVTMKLMDEVAGIVA-----------ARHCKTNIVTASVD-AINFHDKI 99
Query: 98 KIGEQIVIESSTKKCGKK 115
+ G I I K
Sbjct: 100 RKGCVITISGRMTFTSNK 117
>2gvh_A AGR_L_2016P; 15159470, acyl-COA hydrolase, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; 2.50A {Agrobacterium tumefaciens} SCOP:
d.38.1.1 d.38.1.1
Length = 288
Score = 35.4 bits (82), Expect = 0.003
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 20/105 (19%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
TN GTL GG L+D ++ A ++ + S + I + + A
Sbjct: 38 GDTNHHGTLFGGTGLALMDRVAFIAA-----------TRFGRTPFVTASCE-RIDFRQPA 85
Query: 98 KIGEQIVIESSTKKCGKK--LAFLDVLIKNKETGA--LVATGVHT 138
+IG + + K G++ ++++ + G+
Sbjct: 86 RIGHIVEFTARPVKAGRRSLTVEVEMVAETIIGRQQHTCTRGIFH 130
Score = 30.8 bits (70), Expect = 0.12
Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 21/144 (14%)
Query: 3 YTALGKTTKNHLKDLFSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYL 62
A+ + + + + N+ G + GG +
Sbjct: 131 MVAIPEGEDAA-SYVLPELLTEETPDPSDAVTMVEIVFPDQANSAGRMFGGEAIAYMTKA 189
Query: 63 SG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGAKIGEQIVIESSTKKCGKK--L 116
+ A S+ V S + I + R +IGE + ++ ++ G+
Sbjct: 190 AFVAA-----------SRYCGKLVVLASSE-RIDFARAIEIGEIVEAQAHVERVGRSSMS 237
Query: 117 AFLDVLIKNKETGA--LVATGVHT 138
+ +N TG + ATG T
Sbjct: 238 IQTKLWSENLLTGERHITATGHFT 261
>3bjk_A Acyl-COA thioester hydrolase HI0827; hotdog fold, trimer of dimers,
YCIA, structural GENO structure 2 function project, S2F;
HET: CIT; 1.90A {Haemophilus influenzae rd KW20} PDB:
1yli_A*
Length = 153
Score = 34.6 bits (80), Expect = 0.004
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
TN G + GG + + A +I+H V +V+ + +I+
Sbjct: 25 SDTNANGDIFGGWIMSQMAMGGAILA-----------KEIAHGRVVTVAVE-SMNFIKPI 72
Query: 98 KIGEQIVIESSTKKCGK 114
+G+ + K G+
Sbjct: 73 SVGDVVCCYGQCLKVGR 89
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex,
gene regulation; HET: MLC; 3.10A {Bacillus subtilis}
SCOP: d.38.1.5
Length = 157
Score = 34.8 bits (80), Expect = 0.004
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 34 VAEMKISQEHTNT-FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHIT 92
++ ++I QEH + G + L+ A++ + ++ I
Sbjct: 57 ISILEIKQEHVFSRNQIARGHHLFAQANSLA-VAVIDDELA-----------LTASADIR 104
Query: 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+ R K GE++V ++ K+ V + + +V +G
Sbjct: 105 FTRQVKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGEEIVFSG 147
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 33.5 bits (77), Expect = 0.008
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGE 101
+ N G +HGG +++ H N ++ + V+ ++ IGE
Sbjct: 9 DDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVA-ALARVE-RTDFLSPMCIGE 66
Query: 102 QIVIESSTKKCGKK--LAFLDVLIKNKETGA--LVATGVHT 138
+ + K + V+ +N TG L
Sbjct: 67 VAHVSAEITYTSKHSVEVQVHVMSENILTGTKKLTNKATLW 107
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A
{Bacillus subtilis} SCOP: d.38.1.5
Length = 121
Score = 33.1 bits (76), Expect = 0.011
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 34 VAEMKISQEHTNT-FGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHIT 92
++ ++I QEH + G + L+ A++ + ++ I
Sbjct: 21 ISILEIKQEHVFSRNQIARGHHLFAQANSLA-VAVIDDELA-----------LTASADIR 68
Query: 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+ R K GE++V ++ K+ V + + +V +G
Sbjct: 69 FTRQVKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGEEIVFSG 111
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic
mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP}
SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Length = 141
Score = 33.1 bits (76), Expect = 0.011
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGA---LVATG 135
V + +++ A + + IE+ K+ +K + G LV
Sbjct: 62 VSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSRTTPGGDVQLVMRA 113
>3r87_A Putative uncharacterized protein; unknown function; 1.05A
{Photobacterium profundum}
Length = 135
Score = 33.0 bits (76), Expect = 0.012
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
++ + G + E I +S GK + G
Sbjct: 60 YKANMIFQDGVEFAEICDIRTSFTLDGKYKTLWRQEVWRPGASRAAVIG 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.017
Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 51/137 (37%)
Query: 3 YTALGKTTKNHLKDLFSYHQVNILSAAD--------GKCVAEMKISQEHTNTFGTLHGGM 54
Y AL +++S G + E G + GM
Sbjct: 1767 YAAL-------------ASLADVMSIESLVEVVFYRGMTMQVAVPRDEL----GRSNYGM 1809
Query: 55 TATLVDYLSGCALLTHKNVMEESSKIS-HSGVSVDLHITYIRGAKI------GEQIVIES 107
A ++ A + + + ++ +G V+ I +Q V +
Sbjct: 1810 IA--INPGRVAASFSQEALQYVVERVGKRTGWLVE----------IVNYNVENQQYVA-A 1856
Query: 108 STKKCGKKLAFLDVLIK 124
G A LD +
Sbjct: 1857 -----GDLRA-LDTVTN 1867
Score = 32.7 bits (74), Expect = 0.033
Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 47/157 (29%)
Query: 15 KDLFSYHQV--NILSAADGKCVAEMKIS---------QEHTNTFGTLHGG------MTAT 57
DL+ + ++ + AD S T FG G
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 58 LVDYLSGCALLTH--KNVMEESSKISHSGVSVDLHITYIRGAKIGEQ--IVIESSTKKCG 113
+ G K + E S+ + L T Q + +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF------TQPALTLME------ 1740
Query: 114 KKLAFLDVLIKNKETGALVATGVHTKYIAG-----YS 145
A + L K G + A AG Y+
Sbjct: 1741 --KAAFEDL---KSKGLIPA----DATFAGHSLGEYA 1768
Score = 30.8 bits (69), Expect = 0.16
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 33/95 (34%)
Query: 6 LGKTTKNHLKDL------FSYHQVNI--LSAADGK---------------CVAEMKISQE 42
L + KDL F+ + I DG C+ + + E
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 43 HTNTFGTLHGGMTATLVDY----LSGCALLTHKNV 73
T F H ++D+ SG +LTH+N
Sbjct: 492 TTTQFKATH------ILDFGPGGASGLGVLTHRNK 520
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A
{Campylobacter jejuni}
Length = 137
Score = 32.6 bits (75), Expect = 0.017
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 16/77 (20%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSGV---SVDLHITYIRGA 97
TN G + GG + +D A ++S V S+D + +
Sbjct: 16 SDTNPAGNIFGGWILSQIDLAGAIAA-----------RELSPERVVTISMD-KVVFKEPV 63
Query: 98 KIGEQIVIESSTKKCGK 114
IG+ I S G
Sbjct: 64 FIGDIISCYSKVVNVGN 80
>2own_A Putative oleoyl-[acyl-carrier protein] thioestera; NP_784467.1,
oleoyl thioesterase (putative); 2.00A {Lactobacillus
plantarum} SCOP: d.38.1.8 d.38.1.8
Length = 262
Score = 33.2 bits (75), Expect = 0.019
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 36 EMKISQEHTNTFGTLHGGMTATLVDYLSGCAL--LTHKNV-MEESSKISHSGVSVDLHIT 92
+ +I+ + G TL+D + + E V I
Sbjct: 15 QHRITYYECDRTGRAT---LTTLIDIAVLASEDQSDALGLTTEMVQSHGVGWVVTQYAID 71
Query: 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
R + E + I A+ + I++ G +A
Sbjct: 72 ITRMPRQDEVVTIAVRGSAYNPYFAYREFWIRD-ADGQQLAYI 113
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consor SGC, fatty acid metabolism,
hydrolase; HET: COA; 2.70A {Homo sapiens}
Length = 333
Score = 32.4 bits (74), Expect = 0.031
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 20/79 (25%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSG-CALLTHKNVMEESSKISHSG-----VSVDLHITYIR 95
H G L G +D + A H+G SVD I +
Sbjct: 35 AHATARGELSAGQLLKWIDTTACLAA-------------EKHAGVSCVTASVD-DIQFEE 80
Query: 96 GAKIGEQIVIESSTKKCGK 114
A++G+ I I++ +
Sbjct: 81 TARVGQVITIKAKVTRAFS 99
Score = 32.1 bits (73), Expect = 0.054
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 14/70 (20%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGV---SVDLHITYIRGAK 98
H N G GG ++ ++ + +S++ + SVD + +
Sbjct: 209 PHANHHGNTFGGQIMAWMETVATIS----------ASRLCWAHPFLKSVD-MFKFRGPST 257
Query: 99 IGEQIVIESS 108
+G+++V +
Sbjct: 258 VGDRLVFTAI 267
>1s5u_A Protein YBGC; structural genomics, hypothetical protein,
thioesterase fold, PSI, protein structure initiative;
1.70A {Escherichia coli} SCOP: d.38.1.1
Length = 138
Score = 30.6 bits (70), Expect = 0.099
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+ + Y A++ + + I++ I N E L+
Sbjct: 62 RKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAE-NTLLNEA 109
>2ess_A Acyl-ACP thioesterase; NP_810988.1, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Bacteroides
thetaiotaomicron} SCOP: d.38.1.8 d.38.1.8
Length = 248
Score = 30.5 bits (68), Expect = 0.17
Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 36 EMKISQEHTNTFGTLHGGMTATLVDYLSGCAL--LTHKNV-MEESSKISHSGVSVDLHIT 92
+ H + G L L ++L CA + + + ++ +++ V L I
Sbjct: 12 QFVAEPFHVDFNGRLT---MGVLGNHLLNCAGFHASDRGFGIATLNEDNYTWVLSRLAIE 68
Query: 93 YIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALV 132
E+ +++ + + + + +K+ +
Sbjct: 69 LDEMPYQYEKFSVQTWVENVYRLFTDRNFAVIDKDGKKIG 108
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.85A {Thermus thermophilus} SCOP: d.38.1.7
Length = 141
Score = 29.8 bits (67), Expect = 0.17
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 83 SGVSVDLHITYIRGAKIGEQIVIESS-TKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
G+ + ++ A G ++ + + K G ++ V N E G L+ G + I
Sbjct: 60 EGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYA-RVEAYN-ELGDLIGVGRTEQVI 117
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex
aeolicus} PDB: 2egi_A 2egr_A
Length = 128
Score = 29.1 bits (66), Expect = 0.27
Identities = 3/49 (6%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
++ + Y + + + + ++ + ++ ++ VA
Sbjct: 57 LNAYCEYKKPLFYDDVFEVHLNLEELSRFTFTFSYIVFKEDI--AVAKA 103
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A*
1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A*
2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A*
3abm_A* 3ag1_A* ...
Length = 514
Score = 29.9 bits (68), Expect = 0.28
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 77 SSKISHSGVSVDLHI 91
+ ++H+G SVDL I
Sbjct: 133 AGNLAHAGASVDLTI 147
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 29.1 bits (66), Expect = 0.30
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
V+L +T+ A+ GE + + + + + ++ + L+A G
Sbjct: 57 VELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGV--LLAEG 103
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane,
TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A
{Helicobacter pylori}
Length = 135
Score = 28.5 bits (64), Expect = 0.48
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+ + A +G+ + I + K+ K L I + +L
Sbjct: 52 RSIKADFFTPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMK 100
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious
disease, rhizobiales, bacteremia, endocarditis,
bacillary angiomatosis; 2.50A {Bartonella henselae}
Length = 167
Score = 28.1 bits (63), Expect = 0.77
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
+ I + R A+I + I++ + F++ I + E+ ++ T
Sbjct: 95 RHMEINFSRPAQIDNLLTIKTRISRLQGARFFMEQYILHGES--MLVTA 141
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 26.4 bits (59), Expect = 3.9
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 71 KN-VMEESSKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETG 129
K V+ E SKI H ++Y+ + I E + + T L F + +K G
Sbjct: 296 KESVIMEGSKIPH--------LSYVGDSVIAEDVNFGAGTLIAN--LRFDEKEVKVNVKG 345
Query: 130 ALVATGVH 137
+++G
Sbjct: 346 KRISSGRR 353
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta
dimeric protein with A fold resembling A hotdog, PSI;
1.70A {Shewanella oneidensis} SCOP: d.38.1.5
Length = 155
Score = 25.3 bits (55), Expect = 7.0
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 22 QVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKIS 81
Q+ LS DG+ ++ + N T+ G T++ + + ++ I
Sbjct: 33 QIAPLSFTDGELSVSAPLAP-NINLHHTMFAGSIYTIMTLTGWGMVWLQQQLLNVDGDI- 90
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIESST--------KKCGKKLAFLDVLIKNKETGALVA 133
V D HI Y+ + ++ ++ K L+V +
Sbjct: 91 ---VLADAHIRYLA--PVTSAPEVKVRWPDTNLSPLQRGRKAKVKLEVQLFCDGKLCAQF 145
Query: 134 TGVH 137
G++
Sbjct: 146 DGLY 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,059,260
Number of extensions: 109165
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 65
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)