RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7396
(145 letters)
>d2f0xa1 d.38.1.5 (A:3-138) Hypothetical protein Them2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 136
Score = 89.3 bits (221), Expect = 2e-24
Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 8/121 (6%)
Query: 21 HQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKI 80
++ ++SAA GK + EMK+ +EHTN GTLHGG+TATLVD +S ALL +
Sbjct: 24 GKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER-------- 75
Query: 81 SHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140
GVSVD++ITY+ AK+GE IVI + K GK LAF V + NK TG L+A G HTK+
Sbjct: 76 GAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKH 135
Query: 141 I 141
+
Sbjct: 136 L 136
>d1wlua1 d.38.1.5 (A:2-117) Phenylacetic acid degradation protein
PaaI {Thermus thermophilus [TaxId: 274]}
Length = 116
Score = 69.6 bits (170), Expect = 6e-17
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
+L A G+ V ++ +H N GT HGG L D A T
Sbjct: 12 VLHLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPA----------- 60
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140
V++ + Y R G ++ + ++ A V + ++ G LVA T +
Sbjct: 61 VALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSE--GKLVALFTGTVF 114
>d1sc0a_ d.38.1.5 (A:) Hypothetical protein HI1161 {Haemophilus
influenzae [TaxId: 727]}
Length = 137
Score = 68.9 bits (168), Expect = 2e-16
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I + + A M + FG LHGG++ L + + A +
Sbjct: 27 ISAFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLCLEEG-------KTV 79
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V +D++ ++R + G ++ ++ G+ + + I+ E L T +
Sbjct: 80 VGLDINANHLRPVRSG-KVTARATPINLGRNIQVWQIDIRT-EENKLCCVSRLTLSV 134
>d2fs2a1 d.38.1.5 (A:1-131) Phenylacetic acid degradation protein
PaaI {Escherichia coli [TaxId: 562]}
Length = 131
Score = 68.1 bits (166), Expect = 3e-16
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I+S +G V M ++ + N + HGG +L D A + +
Sbjct: 26 IISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQG----------LAA 75
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140
V+ I ++R G+ + + + GK+ D+ I N + VA +
Sbjct: 76 VASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVN-QQQKTVALFRGKSH 130
>d1vh5a_ d.38.1.5 (A:) Hypothetical protein YdiI {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 65.1 bits (158), Expect = 6e-15
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
D A M + FG LHGG + L + + A
Sbjct: 29 FEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGE-------QKV 81
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V ++++ ++R A+ G ++ G + + I + E G L + T I
Sbjct: 82 VGLEINANHVRSAREG-RVRGVCKPLHLGSRHQVWQIEIFD-EKGRLCCSSRLTTAI 136
>d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309
{Caulobacter crescentus [TaxId: 155892]}
Length = 142
Score = 65.0 bits (158), Expect = 7e-15
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 29 ADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVD 88
G+ ++ + HTN G HGGM + D G + K+ V+V
Sbjct: 28 GPGQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSW---------VTVR 78
Query: 89 LHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGV 136
L ++ GAK+G+ + E L + I E + TGV
Sbjct: 79 LMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGV 126
>d1vh9a_ d.38.1.5 (A:) Hypothetical protein YbdB {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 64.2 bits (156), Expect = 1e-14
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
D AEM + FG LHGG +A L + L A
Sbjct: 29 YTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDG-------QCV 81
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAG 143
V +L+ T+ R G+ + G++ ++++ + E G T + G
Sbjct: 82 VGTELNATHHRPVSEGK-VRGVCQPLHLGRQNQSWEIVVFD-EQGRRCCTCRLGTAVLG 138
>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818
{Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 203
Score = 64.2 bits (156), Expect = 4e-14
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 30 DGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL 89
DG + ++ + G +HGG++A L+D++ G A +G++ L
Sbjct: 103 DGSVRGTVTLTIPYQGPPGHVHGGVSALLLDHVLGVANAWG----------GKAGMTAQL 152
Query: 90 HITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATG 135
Y R + E + + + I+ + G + +
Sbjct: 153 STRYHRPTPLFEPLTLTGKLMSVDGRKITTAGDIRTAD-GQVCVSV 197
>d1ixla_ d.38.1.5 (A:) Hypothetical protein PH1136 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 130
Score = 61.1 bits (148), Expect = 1e-13
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 25 ILSAADGKCVAEMKISQE-HTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHS 83
+ +G E++ E + G +HGG T L DY + + +
Sbjct: 20 PILIKEGYAEVELETIDEMKVDEKGLVHGGFTFGLADYAAML------------AVNEPT 67
Query: 84 GVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
V + + + K+G+++V ++ + K ++V + +E +V G Y+
Sbjct: 68 VVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEE--VVLEGKFYCYV 123
>d1zkia1 d.38.1.5 (A:4-129) Hypothetical protein PA5202 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 60.8 bits (147), Expect = 2e-13
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
+S DG + ++ N G +HGG + +T S
Sbjct: 19 PVSLGDGVAEVRLPMAAHLRNRGGVMHGGALFS-------LMDVTMGLACSSSHGFDRQS 71
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHT 138
V+++ I YIR GE + + G++ ++ ++ + LVA G T
Sbjct: 72 VTLECKINYIRAVADGE-VRCVARVLHAGRRSLVVEAEVRQGDK--LVAKGQGT 122
>d1sh8a_ d.38.1.5 (A:) Hypothetical protein PA5026 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 153
Score = 58.6 bits (141), Expect = 2e-12
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 18/127 (14%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
G M + N G+++ G TL + G LT + +
Sbjct: 27 AEVLEPGYVRLRMPG-AGNENHIGSMYAGALFTLAELPGGALFLTSFDSARFYPIV---- 81
Query: 85 VSVDLHITYIRGAKIG----------EQIVIESSTKKCGKKLAFLDVLIKNKETGALVAT 134
++ + + R AK +E+ + GK L++ + + E G +VA
Sbjct: 82 --KEMTLRFRRPAKGDIRVEARLDAERIRQLETEAGERGKAEYSLELQLTD-EQGEVVAE 138
Query: 135 GVHTKYI 141
+
Sbjct: 139 SAALYQL 145
>d1q4ua_ d.38.1.5 (A:) 4-hydroxybenzoyl CoA thioesterase
{Arthrobacter sp., strain su [TaxId: 1667]}
Length = 140
Score = 56.3 bits (135), Expect = 1e-11
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 25 ILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSG 84
I + A ++++ +G +HGG L + L+ A + + + +
Sbjct: 28 IDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVVHEKGMMAVGQSN- 86
Query: 85 VSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYI 141
T + E+ G F DV +++ + G L A + +
Sbjct: 87 ------HTSFFRPVKEGHVRAEAVRIHAGSTTWFWDVSLRD-DAGRLCAVSSMSIAV 136
>d1yoca1 d.38.1.5 (A:1-145) Hypothetical protein PA1835 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 145
Score = 49.3 bits (117), Expect = 7e-09
Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 8/124 (6%)
Query: 18 FSYHQVNILSAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEES 77
F+ + G +E N GT+H + +G
Sbjct: 27 FASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAG--- 83
Query: 78 SKISHSGVSVDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVH 137
H + + + Y+ A + V + S + ++ V
Sbjct: 84 ----HRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAY-VDDKPVFRAEI 138
Query: 138 TKYI 141
T Y+
Sbjct: 139 TMYV 142
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 44.6 bits (105), Expect = 4e-07
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 27 SAADGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVS 86
+A + + ++ N TL GG + +D ++ + H S+ S
Sbjct: 4 TANESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRH-------SRKECVTAS 56
Query: 87 VDLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDV 121
+D + ++ + + + ES G+ + V
Sbjct: 57 MD-WVDFLHPVRSSDCVSYESFVIWTGRTSMEVFV 90
>d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase
HI0827 {Haemophilus influenzae [TaxId: 727]}
Length = 142
Score = 40.0 bits (93), Expect = 1e-05
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 30 DGKCVAEMKISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDL 89
G + TN G + GG + +D + V+V+
Sbjct: 4 KGVLLLRTLAMPSDTNANGDIFGGWIMSQMDMGGAILAKEI-------AHGRVVTVAVE- 55
Query: 90 HITYIRGAKIGEQIVIESSTKKCGK 114
+ +I+ +G+ + K G+
Sbjct: 56 SMNFIKPISVGDVVCCYGQCLKVGR 80
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
halodurans [TaxId: 86665]}
Length = 155
Score = 37.7 bits (87), Expect = 1e-04
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGE 101
TN GT+ GG +D ++ + H N + S+D + + A +G+
Sbjct: 20 PDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVT-------ASID-SVDFKSSATVGD 71
Query: 102 QIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIAGY 144
+ +E G+ + V + + + TG T +
Sbjct: 72 ALELEGFVTHTGRTSMEVYVRVHSNN----LLTGERTLTTESF 110
>d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 116
Score = 36.9 bits (85), Expect = 1e-04
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGE 101
+ N+ G + GG + + A + S + I + R +IGE
Sbjct: 11 DQANSAGRMFGGEAIAYMTKAAFVAASRY-------CGKLVVLASSE-RIDFARAIEIGE 62
Query: 102 QIVIESSTKKCGK 114
+ ++ ++ G+
Sbjct: 63 IVEAQAHVERVGR 75
>d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 135
Score = 35.4 bits (81), Expect = 8e-04
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 42 EHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSVDLHITYIRGAKIGE 101
TN GTL GG L+D ++ A + S + I + + A+IG
Sbjct: 18 GDTNHHGTLFGGTGLALMDRVAFIA-------ATRFGRTPFVTASCE-RIDFRQPARIGH 69
Query: 102 QIVIESSTKKCGKKL--AFLDVLIKNKETGA--LVATGVHT 138
+ + K G++ ++++ + G+
Sbjct: 70 IVEFTARPVKAGRRSLTVEVEMVAETIIGRQQHTCTRGIFH 110
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581
{Thermotoga maritima [TaxId: 2336]}
Length = 130
Score = 34.4 bits (79), Expect = 0.001
Identities = 6/61 (9%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 82 HSGVSVDLHITYIRGAKIGEQIVIES-STKKCGKKLAFLDVLIKNKETGALVATGVHTKY 140
++ V V+ +++ G ++ + G ++ F ++ + + + +
Sbjct: 61 YTAVVVETLARHVKAVPTGTRVAVGVRVVGVVGNRVKF-RGIVMSGDE--KILEAEFVRA 117
Query: 141 I 141
I
Sbjct: 118 I 118
>d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 32.1 bits (73), Expect = 0.010
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 9/115 (7%)
Query: 32 KCVAEMKISQEHTNTFG----TLHGGMTATLVDYLSGCALLTHKNVMEESSKISHSGVSV 87
+ V E ++ E T F T +V ++ +EE G+
Sbjct: 9 EAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEG----EEGIGS 64
Query: 88 DLHITYIRGAKIGEQIVIESSTKKCGKKLAFLDVLIKNKETGALVATGVHTKYIA 142
+ ++ A G ++ + + +K + V N E G L+ G + I
Sbjct: 65 YVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYN-ELGDLIGVGRTEQVIL 118
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
catalytic domain {Fungus (Penicillium citrinum) [TaxId:
5077]}
Length = 475
Score = 25.8 bits (56), Expect = 2.1
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 39 ISQEHTNTFGTLHGGMTATLVDYLSGCALLTHKNVMEESSKI------SHSGVSVDLHIT 92
+S H ++ G A+ VD LS ++ +V+ + S + +V L T
Sbjct: 33 VSNGHADSRN----GWGASAVDALSTAVIMGKADVVNAILEHVADIDFSKTSDTVSLFET 88
Query: 93 YIR 95
IR
Sbjct: 89 TIR 91
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 143
Score = 24.5 bits (53), Expect = 5.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 92 TYIRGAKIGEQIVIESSTKKCGKKLA 117
+Y GA+IG + + + ++ K +A
Sbjct: 5 SYQHGARIGVLVAAKGADEELVKHIA 30
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 24.5 bits (53), Expect = 5.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 77 SSKISHSGVSVDLHITYIRGAKIG 100
S GV VD I ++ + IG
Sbjct: 126 SGIEYSPGVGVDYWIWSLQLSGIG 149
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 24.3 bits (52), Expect = 7.3
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 44 TNTFGTLHGGMTATLVDYLSGCALLTHKNVMEES---------SKISHSGVSVDLHITYI 94
+N+F G ++ +D L L+ +++ + + + + T I
Sbjct: 38 SNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVFETNI 97
Query: 95 R 95
R
Sbjct: 98 R 98
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain
{Thermus thermophilus HB8 [TaxId: 300852]}
Length = 63
Score = 22.6 bits (49), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 103 IVIESSTKKCGKKLAFLDVLIKNKETGALV 132
+E +K G+ A + KN ETGA V
Sbjct: 21 ECVEYQHQKLGRGGAKVVAKFKNLETGATV 50
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 24.0 bits (52), Expect = 9.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 77 SSKISHSGVSVDLHI 91
+ ++H+G SVDL I
Sbjct: 133 AGNLAHAGASVDLTI 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,813
Number of extensions: 18280
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 28
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)