BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7398
         (463 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
           Fut8
          Length = 526

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/469 (48%), Positives = 298/469 (63%), Gaps = 12/469 (2%)

Query: 3   NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
             ++EI R R+ N  +E W+++ SEL K K    N    L    ++ + +   H+RS++ 
Sbjct: 47  GKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNE---LQRHADEFLLDLGHHERSIMT 103

Query: 63  DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
           DL  L  +D    WR KE+ DL++LVQRR+ YLQNP DC  AKKLVC +NKGCGYGCQLH
Sbjct: 104 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 163

Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
           HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT   G ST  W G      
Sbjct: 164 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKN 223

Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
            QV++LP++DS     P +     E L    +        +W  +    YL +PQ     
Sbjct: 224 VQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 282

Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
           +  +   K G K   +  ++   DKVGTEAAFH ++EYM  VEE+++ LA +  VD KRV
Sbjct: 283 EIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 342

Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
           Y+ATDDP +L E K KYP Y  + D SI+ +A +  RY+E+SL G+I DIHFLS  DFLV
Sbjct: 343 YLATDDPSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 402

Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
           CTFSSQ+CRVAYE M T+ PDAS  + SLDDIYYFGGQ +   +A+  H P+   E+ + 
Sbjct: 403 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPME 462

Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
            GD I VAGNHW+GYSKG N +  +  LYP++KV  ++ET  +PTYP+ 
Sbjct: 463 PGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 511


>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
           Hypothetical Protein Sh3rf2
          Length = 70

 Score = 38.5 bits (88), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 391 GQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
           G    + VA+  ++   P E++L  G+ I V G + +G+ KG +L T +  ++P+  V+P
Sbjct: 4   GSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63


>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
           Cd2ap
          Length = 60

 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 391 GQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT 445
           G + R    +  ++P++  E+EL+VGD I V      G+  GT    N+L L+P+
Sbjct: 1   GSMGRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGT--LNNKLGLFPS 53


>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
          Length = 65

 Score = 33.5 bits (75), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 397 HVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
           + A+  + P++  E+EL  GD + V     +G+  GT+ RT Q   +P   V P
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62


>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
          Length = 64

 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 397 HVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
           + A+  + P++  E+EL  GD + V     +G+  GT+ RT Q   +P   V P
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62


>pdb|3BEO|A Chain A, A Structural Basis For The Allosteric Regulation Of Non-
          Hydrolyzing Udp-Glcnac 2-Epimerases
 pdb|3BEO|B Chain B, A Structural Basis For The Allosteric Regulation Of Non-
          Hydrolyzing Udp-Glcnac 2-Epimerases
          Length = 375

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 28 LTKFKT--EVVNYSPLL------ASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLK 79
          +T F T  E +  +PL+        K+E +++ TA+H++ L Q L+    +  F+   +K
Sbjct: 12 MTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMK 71

Query: 80 ESHDLSDLVQRRLEYL 95
          +   L D+  R LE L
Sbjct: 72 DRQTLIDITTRGLEGL 87


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 32.0 bits (71), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 362 CRVAYEYMNTMFPDASMQYKSLDDIYYFGGQIS 394
           C +A+    T +PD+ + +K LDD Y+F  Q +
Sbjct: 434 CTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFT 466


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 31.6 bits (70), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 362 CRVAYEYMNTMFPDASMQYKSLDDIYYFGGQIS 394
           C +A+    T +PD+ + +K LDD Y+F  Q +
Sbjct: 434 CTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFT 466


>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
           Protein
          Length = 70

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 399 AVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
           A+  + P++  E+EL  GD++ V     +G+  G + RT +   +P   V P
Sbjct: 12  AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63


>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|B Chain B, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|C Chain C, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|D Chain D, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|E Chain E, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|F Chain F, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|G Chain G, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction.
 pdb|2JER|H Chain H, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
           Reaction
          Length = 389

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 329 GRRYSESSLMGIITDIHFL-SNCDFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIY 387
           G    E   + I + ++FL +N   +V  +  +  R+A E + TMFPD  +   +  ++ 
Sbjct: 290 GTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVV 349

Query: 388 YFGGQISRI 396
           Y GG I  I
Sbjct: 350 YGGGNIHXI 358


>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
 pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
 pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
 pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
          Length = 222

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 391 GQISRIHVAVLPHTPKDPSEMELVVGDKISVAG----NHWNGYSKGTNLRTNQLALYPTF 446
           GQ+ ++  A+    P+ P E+ +  GD I +      N W G SKG      +  L P+ 
Sbjct: 12  GQV-KVFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKG------RTGLIPSN 64

Query: 447 KVVPRVETADFPTY 460
            V  + E+ D P +
Sbjct: 65  YVAEQAESIDNPLH 78


>pdb|2OHH|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Active Oxidized State
 pdb|2OHH|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Active Oxidized State
 pdb|2OHH|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Active Oxidized State
 pdb|2OHH|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Active Oxidized State
 pdb|2OHI|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|G Chain G, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|H Chain H, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|I Chain I, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHI|J Chain J, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Reduced State
 pdb|2OHJ|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Inactive Oxidized State
 pdb|2OHJ|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Inactive Oxidized State
 pdb|2OHJ|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Inactive Oxidized State
 pdb|2OHJ|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
           Diiron Flavoprotein, Inactive Oxidized State
          Length = 404

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 270 DEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEKYPQ 313
           DE MA VE+  +Q+ +++   + + +V  D   VL E+  ++P+
Sbjct: 58  DELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPE 101


>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
           The Target Of Lithium Therapy
 pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
           The Target Of Lithium Therapy
          Length = 277

 Score = 28.9 bits (63), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 297 ATD---DPQVLTEIKEKYPQYTVLGDPSIA 323
           ATD   +  ++T IKEKYP ++ +G+ S+A
Sbjct: 45  ATDQKVEKMLITSIKEKYPSHSFIGEESVA 74


>pdb|3EFC|A Chain A, Crystal Structure Of Yaet Periplasmic Domain
          Length = 395

 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 341 ITDIHFLSNC----DFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRI 396
           I  I F  N     D L     +   RV      T   D     K L+D YY  G+ S  
Sbjct: 77  IASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIE---KGLEDFYYSVGKYSAS 133

Query: 397 HVAVLPHTPKDPSEMELVVGD-------KISVAGNH 425
             AV+   P++  +++LV  +       +I++ GNH
Sbjct: 134 VKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNH 169


>pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone
          Length = 135

 Score = 28.5 bits (62), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 55/107 (51%), Gaps = 13/107 (12%)

Query: 5   NYEITRIRLSNNVQEFWYYVNSELTKFKTEVV--NYSPLLASKLEQVISETAEHKRSLVQ 62
           + E++  +++N++QE    +N EL+  +   +          KL++ +  T E    +++
Sbjct: 25  DLEVSAEKIANHLQE----LNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILE 80

Query: 63  DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVC 109
           +++T+   + F+  RLK      +LV++   +L   ++C T ++ +C
Sbjct: 81  EIDTMVLPEQFKDSRLKR----KNLVKKVQVFL---AECDTVEQYIC 120


>pdb|2QCZ|A Chain A, Structure Of N-Terminal Domain Of E. Coli Yaet
 pdb|2QCZ|B Chain B, Structure Of N-Terminal Domain Of E. Coli Yaet
 pdb|2QDF|A Chain A, Structure Of N-Terminal Domain Of E. Coli Yaet
          Length = 335

 Score = 28.5 bits (62), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 341 ITDIHFLSNC----DFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRI 396
           I  I F  N     D L     +   RV      T   D     K L+D YY  G+ S  
Sbjct: 78  IASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIE---KGLEDFYYSVGKYSAS 134

Query: 397 HVAVLPHTPKDPSEMELVVGD-------KISVAGNH 425
             AV+   P++  +++LV  +       +I++ GNH
Sbjct: 135 VKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNH 170


>pdb|1P5Y|A Chain A, The Structures Of Host Range Controlling Regions Of The
           Capsids Of Canine And Feline Parvoviruses And Mutants
          Length = 548

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 153 EEVFEPVSKTCTSPEGASTSSWPGHDETQVIKLPVIDSNQSARPLISSLHSERLG----T 208
           +E+F  V KT +       +    +D T  + +  +DSN +     +++ SE LG     
Sbjct: 107 QEIFNVVLKTVSESATQPPTKVYNNDLTASLMV-ALDSNNTMPFTPAAMRSETLGFYPWK 165

Query: 209 PTIPTSRRSNRLWDWTDPPSYLFKPQTKT 237
           PTIPT  R    WD T  PS+     T T
Sbjct: 166 PTIPTPWRYYFQWDRTLIPSHTGTSGTPT 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,376,620
Number of Sequences: 62578
Number of extensions: 594749
Number of successful extensions: 1422
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 31
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)