BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7398
(463 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VYV5|FUT8_DROME Alpha-(1,6)-fucosyltransferase OS=Drosophila melanogaster GN=FucT6
PE=1 SV=1
Length = 619
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/470 (51%), Positives = 319/470 (67%), Gaps = 8/470 (1%)
Query: 1 DPNNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVV--NYSPLLASKLEQVISETAEHKR 58
+P+ YE TR R+ N+ E W + +SEL K + V + S L + QV+ + AEHKR
Sbjct: 151 EPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQVLLQGAEHKR 210
Query: 59 SLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYG 118
SL+ D+ ++ SD +EAWR KE+ DLSDLVQRRL +LQNPSDC+ A+KLVC LNKGCGYG
Sbjct: 211 SLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNPSDCQNARKLVCKLNKGCGYG 270
Query: 119 CQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGHD 178
CQLHHVVYCFIVAYAT+RTLILKS+GWRY +GGWEEVF+PVS +C A+T +WPG
Sbjct: 271 CQLHHVVYCFIVAYATERTLILKSRGWRYHKGGWEEVFQPVSNSCHDAGTANTYNWPGKP 330
Query: 179 ETQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQTKTP 238
TQV+ LP+IDS P + E L P + +W YL +PQ T
Sbjct: 331 NTQVLVLPIIDSLMPRPPYLPLAVPEDLA-PRLKRLHGDPIVWWVGQFLKYLLRPQPTTR 389
Query: 239 DFLS----KYG-EKDQLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKR 293
DFL+ G E+ + ++ DKVGTEAA H V+EYM VE+YY+ L + + +R
Sbjct: 390 DFLTSGMRNLGWERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARR 449
Query: 294 VYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFL 353
+++A+DD QV+ E + KYPQY ++GDP +A ASV RY++++L GII DIH LS D L
Sbjct: 450 IFLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDIHLLSMSDHL 509
Query: 354 VCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMEL 413
VCTFSSQ+CRVAYE M TM+PDA+ ++KSLDDIYY+GGQ + V+ H P+ +++L
Sbjct: 510 VCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNAHNRRVVIAHKPRTHEDLQL 569
Query: 414 VVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
VGD +SVAGNHW+G SKG N RTNQ L+P+FKV +V+TA P Y +
Sbjct: 570 RVGDLVSVAGNHWDGNSKGKNTRTNQGGLFPSFKVEEKVDTAKLPLYAGI 619
>sp|Q6NVP8|FUT8_XENTR Alpha-(1,6)-fucosyltransferase OS=Xenopus tropicalis GN=fut8 PE=2
SV=1
Length = 578
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/474 (48%), Positives = 304/474 (64%), Gaps = 22/474 (4%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R + N +EFWY+V SE+ K K N L ++++I + +RS++
Sbjct: 112 GKDHEILRRAIENGAKEFWYFVQSEVKKLKHLDRNE---LQRHVDEIIIDMGHQQRSVMT 168
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR +E+ DL+DLVQRR+ YLQNP DC AKKLVC +NKGCGYGCQLH
Sbjct: 169 DLYYLSQTDGAGDWREREAKDLTDLVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 228
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF+PVS+TCT G+ST W G
Sbjct: 229 HVVYCFMIAYGTQRTLILESQSWRYATGGWETVFKPVSETCTDRSGSSTGHWSGEANDKN 288
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSN-----RLWDWTDPPSYLFKPQ 234
QV++LP++DS P + LG P R +W + YL +PQ
Sbjct: 289 VQVVELPIVDSLHPRPPYLP------LGVPEDLADRLIRLHGDPAVWWVSQFVKYLIRPQ 342
Query: 235 ----TKTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTV 289
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + +
Sbjct: 343 PWLEKEIEESTKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQI 402
Query: 290 DVKRVYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSN 349
D KRVY+ATDDP +L E K KYPQY + D SI+ +A + RY+E+SL G+I DIHFLS
Sbjct: 403 DKKRVYLATDDPTLLQEAKAKYPQYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQ 462
Query: 350 CDFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPS 409
DFLVCTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ PH P++
Sbjct: 463 ADFLVCTFSSQVCRVAYEIMQTLHPDASAHFHSLDDIYYFGGQNAHNQLAIYPHQPRNAE 522
Query: 410 EMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
E+ L GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTY +
Sbjct: 523 EIPLEPGDIIGVAGNHWDGYSKGINRKLGRTGLYPSYKVKEKIETVKYPTYQEA 576
>sp|Q659X0|FUT8_CANFA Alpha-(1,6)-fucosyltransferase OS=Canis familiaris GN=FUT8 PE=2
SV=1
Length = 575
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/469 (47%), Positives = 300/469 (63%), Gaps = 12/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R R+ N +E W+++ SEL K K N +L ++ +S+ H+RS++
Sbjct: 109 GKDHEILRRRIENGAKELWFFLQSELKKLKNLEGN---VLQRHADEFLSDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PV++TCT G ST W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVNETCTDRSGTSTGHWSGEVKDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQTKTPD 239
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 VQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 240 FLSKYGEK-----DQLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + +K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD +RV
Sbjct: 345 EIEEATKKLGFNIPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKRRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPSLLKEAKTKYPTYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 464
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ PH P+ E+ +
Sbjct: 465 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYPHQPRTADEIPME 524
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 525 PGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 573
>sp|Q6EV77|FUT8_PANTR Alpha-(1,6)-fucosyltransferase OS=Pan troglodytes GN=FUT8 PE=2 SV=1
Length = 575
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 298/469 (63%), Gaps = 12/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R R+ N +E W+++ SEL K K N L ++ + + H+RS++
Sbjct: 109 GKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNE---LQRHADEFLLDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT G ST W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 VQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD KRV
Sbjct: 345 EIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 464
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ H P+ E+ +
Sbjct: 465 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPME 524
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 525 PGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 573
>sp|Q9BYC5|FUT8_HUMAN Alpha-(1,6)-fucosyltransferase OS=Homo sapiens GN=FUT8 PE=1 SV=2
Length = 575
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 298/469 (63%), Gaps = 12/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R R+ N +E W+++ SEL K K N L ++ + + H+RS++
Sbjct: 109 GKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNE---LQRHADEFLLDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT G ST W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 VQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD KRV
Sbjct: 345 EIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 464
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ H P+ E+ +
Sbjct: 465 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPME 524
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 525 PGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 573
>sp|Q9WTS2|FUT8_MOUSE Alpha-(1,6)-fucosyltransferase OS=Mus musculus GN=Fut8 PE=2 SV=2
Length = 575
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 299/469 (63%), Gaps = 12/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R R+ N +E W+++ SEL K K N L ++++ + H+RS++
Sbjct: 109 GKDHEILRRRIENGAKELWFFLQSELKKLKHLEGNE---LQRHADEILLDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC A+KLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKARKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT G ST W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGLSTGHWSGEVNDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 IQVVELPIVDSLHPRPPYLPLAVPEDLADRLLRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD KRV
Sbjct: 345 EIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KY Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPTLLKEAKTKYSNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 464
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +AV PH P+ E+ +
Sbjct: 465 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAVYPHKPRTEEEIPME 524
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 525 PGDIIGVAGNHWDGYSKGINRKLGKTGLYPSYKVREKIETVKYPTYPEA 573
>sp|Q6EV76|FUT8_RAT Alpha-(1,6)-fucosyltransferase OS=Rattus norvegicus GN=Fut8 PE=2
SV=1
Length = 575
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 299/469 (63%), Gaps = 12/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++E+ R R+ N +E W+++ SEL K K N L ++++ + H+RS++
Sbjct: 109 GKDHELLRRRIENGAKELWFFLQSELKKLKHLEGNE---LQRHADEILLDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC A+KLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKARKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT G ST W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGLSTGHWSGEVNDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 IQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD KRV
Sbjct: 345 EIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KY Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPALLKEAKTKYSNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 464
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +AV PH P+ E+ +
Sbjct: 465 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAVYPHKPRTDEEIPME 524
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 525 PGDIIGVAGNHWDGYSKGVNRKLGKTGLYPSYKVREKIETVKYPTYPEA 573
>sp|Q9N0W2|FUT8_BOVIN Alpha-(1,6)-fucosyltransferase OS=Bos taurus GN=FUT8 PE=2 SV=1
Length = 575
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 295/469 (62%), Gaps = 12/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R R+ N +E W+++ SEL K K N L ++ +S+ H+RS++
Sbjct: 109 GKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNE---LQRHADEFLSDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S WRYA GGWE VF PVS+TCT G T W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESHNWRYATGGWETVFRPVSETCTDRSGVYTGHWSGEIKDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 VQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD KRV
Sbjct: 345 EIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPSLLKEAKTKYPHYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 464
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ PH P+ E+ +
Sbjct: 465 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYPHEPRTADEIPME 524
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET P P+
Sbjct: 525 PGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKVPHVPEA 573
>sp|Q5NVB3|FUT8_PONAB Alpha-(1,6)-fucosyltransferase OS=Pongo abelii GN=FUT8 PE=2 SV=1
Length = 574
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 298/469 (63%), Gaps = 13/469 (2%)
Query: 3 NNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQ 62
++EI R R+ N +E W+++ SEL K K N L ++ + + H+RS++
Sbjct: 109 GKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNE---LQRHADEFLLDLGHHERSIMT 165
Query: 63 DLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQLH
Sbjct: 166 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLH 225
Query: 123 HVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DE 179
HVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT G ST W G
Sbjct: 226 HVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKN 285
Query: 180 TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ----T 235
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 286 VQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLEK 344
Query: 236 KTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
+ + K G K + ++ DKVGTEAAFH ++EYM VEE+++ LA + VD KRV
Sbjct: 345 EIEEATRKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRV 404
Query: 295 YVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLV 354
Y+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFLV
Sbjct: 405 YLATDDPSLLKEAKTKYPNY-FISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLV 463
Query: 355 CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELV 414
CTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ H P+ E+ +
Sbjct: 464 CTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPME 523
Query: 415 VGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 524 PGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 572
>sp|P79282|FUT8_PIG Alpha-(1,6)-fucosyltransferase OS=Sus scrofa GN=FUT8 PE=1 SV=1
Length = 575
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/470 (47%), Positives = 295/470 (62%), Gaps = 12/470 (2%)
Query: 2 PNNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLV 61
P ++EI R R+ N +E W+++ SEL K K N L ++ +S+ H+RS++
Sbjct: 108 PGKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNE---LQRHADEFLSDLGHHERSIM 164
Query: 62 QDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQL 121
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQL
Sbjct: 165 TDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQL 224
Query: 122 HHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---D 178
HHVVYCF++AY TQRTL L+S WRYA GGWE VF PVS+TCT G+ST W G
Sbjct: 225 HHVVYCFMIAYGTQRTLALESHNWRYATGGWETVFRPVSETCTDRSGSSTGHWSGEVKDK 284
Query: 179 ETQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQ---- 234
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 285 NVQVVELPIVDSVHPRPPYLPLAVPEDLADRLVRV-HGDPAVWWVSQFVKYLIRPQPWLE 343
Query: 235 TKTPDFLSKYGEKDQ-LSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKR 293
+ + K G K + ++ DKVG EAAFH ++EY VEE ++ LA + VD KR
Sbjct: 344 KEIEEATKKLGFKHPVIGVHVRRTDKVGAEAAFHPIEEYTVHVEEDFQLLARRMQVDKKR 403
Query: 294 VYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFL 353
VY+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFL
Sbjct: 404 VYLATDDPALLKEAKTKYPSYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFL 463
Query: 354 VCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMEL 413
VCTFSSQ+CRVAYE M + PDAS ++SLDDIYYFGG + +A+ PH P+ E+ +
Sbjct: 464 VCTFSSQVCRVAYEIMQALHPDASANFRSLDDIYYFGGPNAHNQIAIYPHQPRTEGEIPM 523
Query: 414 VVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GY KG N + + LYP++KV ++ET +PTYP+
Sbjct: 524 EPGDIIGVAGNHWDGYPKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 573
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVV 449
G Q ++VA+ P++P+ E+EL G+ V +G+ KGT++ T ++ ++P +
Sbjct: 434 GRQRPTVYVAMFPYSPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVFPGNYMS 493
Query: 450 PRVETADFPTYPQV 463
P T + P+V
Sbjct: 494 PVSRTVSGSSQPKV 507
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 382 SLDDIYYFGGQI-SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQL 440
S D I + Q ++VA+ P+TP+ E+EL G+ V +G+ KGT++ T+++
Sbjct: 434 STDQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKI 493
Query: 441 ALYPTFKVVP 450
++P V P
Sbjct: 494 GVFPGNYVAP 503
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 382 SLDDIYYFGGQI-SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQL 440
S D I + Q ++VA+ P+TP+ E+EL G+ V +G+ KGT++ T+++
Sbjct: 434 STDQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKI 493
Query: 441 ALYPTFKVVP 450
++P V P
Sbjct: 494 GVFPGNYVAP 503
>sp|Q9ERE9|JIP2_MOUSE C-Jun-amino-terminal kinase-interacting protein 2 OS=Mus musculus
GN=Mapk8ip2 PE=1 SV=1
Length = 830
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTF 446
G + + H AV P+ P E+EL V D + V + + +G N+RT + ++P F
Sbjct: 608 GEEREQTHRAVFRFIPRHPDELELDVDDPVLVEAEEDDFWFRGFNMRTGERGVFPAF 664
>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1
SV=2
Length = 892
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
++VA+ P+TP+ E+EL G+ V +G+ KGT++ T+++ ++P V P
Sbjct: 456 VYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWYKGTSMHTSKIGVFPGNYVAP 510
>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1
PE=1 SV=1
Length = 894
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
++VA+ P+TP+ E+EL G+ V +G+ KGT++ T+++ ++P V P
Sbjct: 457 VYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWYKGTSMHTSKIGVFPGNYVAP 511
>sp|Q13387|JIP2_HUMAN C-Jun-amino-terminal kinase-interacting protein 2 OS=Homo sapiens
GN=MAPK8IP2 PE=1 SV=2
Length = 824
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTF 446
G + + H AV P+ P E+EL V D + V + + +G N+RT + ++P F
Sbjct: 602 GEEREQTHRAVFRFIPRHPDELELDVDDPVLVEAEEDDFWFRGFNMRTGERGVFPAF 658
>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2
SV=1
Length = 840
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
++VA+ P+TP+ E+EL G+ V +G+ KGT++ T+++ ++P V P
Sbjct: 443 VYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 497
>sp|Q8BLR5|PSD4_MOUSE PH and SEC7 domain-containing protein 4 OS=Mus musculus GN=Psd4
PE=2 SV=1
Length = 1005
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 63 DLNTLQASDSFE------------AWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCT 110
D +Q SD+FE W + S LSDL Q LE LQ R+ + L+
Sbjct: 323 DHELIQESDNFEFDLRPATTHPVQPWGSQTSQSLSDLTQPILEDLQREDPSRSQETLISQ 382
Query: 111 LNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSP 166
GC V+C + + +Q +L+ + RG + PVS +SP
Sbjct: 383 NRGERDAGC-FQEPVFCTLAPWGSQTSLLEPNCPESEGRGSGPQP-SPVSSQDSSP 436
>sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 OS=Rattus norvegicus
GN=Sh3rf2 PE=2 SV=1
Length = 735
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV--- 452
+ VA+ ++ + P E++L G+ I V G + +G+ +G +L T + ++P+ V+P
Sbjct: 387 MFVALHTYSAQGPEELDLKKGEGIRVLGKNQDGWLRGVSLVTGRTGIFPSDYVIPVFSST 446
Query: 453 --ETADFP 458
+T+ FP
Sbjct: 447 ARKTSSFP 454
>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus
GN=Sh3rf2 PE=1 SV=2
Length = 735
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV--- 452
+ VA+ ++ P E++L G+ I V G + +G+ KG +L T + ++P+ V+P
Sbjct: 386 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVFSST 445
Query: 453 --ETADFP 458
+T+ FP
Sbjct: 446 ARKTSSFP 453
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1
PE=2 SV=1
Length = 861
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
+ VA+ P+ P+ E+EL G+ V +G+ KGT++ T+++ ++P V P
Sbjct: 439 VFVAIYPYIPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 493
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2
SV=1
Length = 826
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
+ +A+ P+ P+ E+EL G+ V +G+ KGT++ T+++ ++P V P
Sbjct: 402 VFIAIYPYIPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 456
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 394 SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV- 452
+ + VA+ ++ P E++L G+ + V G +G+ +G +L T ++ ++P V+P
Sbjct: 382 ANMFVALHSYSAHGPDELDLQKGEGVRVLGKCQDGWLRGVSLVTGRVGIFPNNYVIPIFR 441
Query: 453 ETADFP 458
+T+ FP
Sbjct: 442 KTSSFP 447
>sp|A8FKR3|RPOB_CAMJ8 DNA-directed RNA polymerase subunit beta OS=Campylobacter jejuni
subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
GN=rpoB PE=3 SV=1
Length = 1375
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 11 IRLSNNVQEFWYYVNSE-LTKFKTEVVNYS--PLLASKLEQVISETAEHKRSLVQD--LN 65
+RL + +QE + + L + + +++ P LAS+ E + S + E + +D
Sbjct: 1148 LRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNYARDWSKG 1207
Query: 66 TLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVV 125
A+ FE ++E L ++ + ++ D RT +K+ ++ GC Y +LHH+V
Sbjct: 1208 VKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLV 1267
>sp|A1VYJ4|RPOB_CAMJJ DNA-directed RNA polymerase subunit beta OS=Campylobacter jejuni
subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpoB
PE=3 SV=1
Length = 1378
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 11 IRLSNNVQEFWYYVNSE-LTKFKTEVVNYS--PLLASKLEQVISETAEHKRSLVQD--LN 65
+RL + +QE + + L + + +++ P LAS+ E + S + E + +D
Sbjct: 1151 LRLGDQIQEIFDRRQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNYARDWSKG 1210
Query: 66 TLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVV 125
A+ FE ++E L ++ + ++ D RT +K+ ++ GC Y +LHH+V
Sbjct: 1211 VKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLV 1270
>sp|Q9XW12|CIAO1_CAEEL Probable cytosolic iron-sulfur protein assembly protein CIAO1
homolog OS=Caenorhabditis elegans GN=Y18D10A.9 PE=1 SV=2
Length = 337
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 366 YEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNH 425
Y+ NT +P S+ + S +D+ GG +I + + TP+ P L V + + NH
Sbjct: 249 YDVENTRWPLYSVAWNSTNDVIATGGGDCKIRLFKISSTPESPVIEHLGVVGRHELDVNH 308
Query: 426 --WNGYSKGTNLRTN 438
WN K +NL T+
Sbjct: 309 VAWNPNPKFSNLLTS 323
>sp|P34385|MCCB_CAEEL Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Caenorhabditis elegans GN=F02A9.4 PE=2 SV=1
Length = 608
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 268 HVDEYMAGVEEYYKQLA--LKQTVDVKRVYVATDDPQVLTEIKEKYPQYTVLGDPSI--- 322
+ DE + EE Y + LK+T DV+ V D E KE+Y + V G +I
Sbjct: 351 NADEPLYPAEEIYGIVGSNLKKTYDVREVIARIVDGSRFHEFKERYGETLVTGFATIYGQ 410
Query: 323 --ALTASVGRRYSESSLMGIITDIHFLSNC 350
+ A+ G ++ES++ G HF+ C
Sbjct: 411 RVGILANNGVLFAESAMKG----SHFIELC 436
>sp|P56696|KCNQ4_HUMAN Potassium voltage-gated channel subfamily KQT member 4 OS=Homo
sapiens GN=KCNQ4 PE=1 SV=2
Length = 695
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 158 PVSKTCTSPEGASTSSWPGHDETQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRS 217
P TC P STS PG IK + + R S H L PT+PTS S
Sbjct: 413 PPVATCHRP--GSTSFCPGESSRMGIKDRIRMGSSQRRTGPSKQH---LAPPTMPTSPSS 467
Query: 218 NRLWDWTDP----PSYLFKPQTKTPDFLSKYGEKDQLSENLYCWDKVGTEAAFH---HVD 270
++ + T P S+ F +T+ F + K + S ++V E ++ VD
Sbjct: 468 EQVGEATSPTKVQKSWSFNDRTR---FRASLRLKPRTSAEDAPSEEVAEEKSYQCELTVD 524
Query: 271 EYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEKY 311
+ M V+ + + + + + KR + T P + ++ E+Y
Sbjct: 525 DIMPAVKTVIRSIRILKFLVAKRKFKETLRPYDVKDVIEQY 565
>sp|Q21SE8|TRPC_RHOFD Indole-3-glycerol phosphate synthase OS=Rhodoferax ferrireducens
(strain DSM 15236 / ATCC BAA-621 / T118) GN=trpC PE=3
SV=1
Length = 264
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 293 RVYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSE--SSLMGIITDIHFLSNC 350
R +A P V+ EIK+ P VL + I A + + Y+E ++ + ++TD+ F C
Sbjct: 46 RGKIAAGQPAVIAEIKKSSPSKGVLREDFI--PADIAQSYAEHGAACLSVLTDLQFFRGC 103
Query: 351 -DFL 353
D+L
Sbjct: 104 IDYL 107
>sp|B9KFG7|RPOB_CAMLR DNA-directed RNA polymerase subunit beta OS=Campylobacter lari
(strain RM2100 / D67 / ATCC BAA-1060) GN=rpoB PE=3 SV=1
Length = 1377
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 8 ITRIRLSNNVQEFWYYVNSELTK-FKTEVVNYSPLLASKLEQVISETAEHKR--SLVQD- 63
I +RL + +QE + + K +T+++ + LE+ E+ ++ S +D
Sbjct: 1147 IVGMRLGDQIQEIFDKKQKDFIKQLRTKILEICSVSRLTLEKKFVESLNDEQLISYARDW 1206
Query: 64 -LNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLH 122
A+ FE ++E L ++ + ++ D RT +K+ ++ GC Y +LH
Sbjct: 1207 ARGVKFATPVFEGVTVEEFSKLFEMAKIAMDGKSELYDGRTGEKMAERVHVGCMYMLKLH 1266
Query: 123 HVV 125
H+V
Sbjct: 1267 HLV 1269
>sp|P38041|BOB1_YEAST Protein BOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=BOI1 PE=1 SV=1
Length = 980
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVA---GNHWNGYSKGTNLRTNQLALYP 444
G + +++AV ++ + E+ + GDKI V G + +G+ G NLRT + LYP
Sbjct: 11 GAKSFPLYIAVNQYSKRMEDELNMKPGDKIKVITDDGEYNDGWYYGRNLRTKEEGLYP 68
>sp|Q9PGT5|TRPC_XYLFA Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain
9a5c) GN=trpC PE=3 SV=1
Length = 264
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 296 VATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCD 351
+A DP V+ EIK+ P VL + ++ +S + ++TD+HF D
Sbjct: 49 IAHGDPAVIAEIKKASPSKGVLREDFRPAEIAISYELGGASCLSVLTDVHFFKGHD 104
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 400 VLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
V+ + P+ +E+EL GD + V H +G+ KGT R + L+P
Sbjct: 827 VVSYPPQSEAEIELKEGDIVFVHKKHEDGWFKGTLQRNGRTGLFP 871
>sp|Q87EX2|TRPC_XYLFT Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=trpC PE=3 SV=1
Length = 264
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 296 VATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCD 351
+A DP V+ EIK+ P VL + ++ +S + ++TD+HF D
Sbjct: 49 IAHGDPAVIAEIKKASPSKGVLREDFRPAEIAISYELGGASCLSVLTDVHFFKGHD 104
>sp|B2I6S5|TRPC_XYLF2 Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain
M23) GN=trpC PE=3 SV=1
Length = 264
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 296 VATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCD 351
+A DP V+ EIK+ P VL + ++ +S + ++TD+HF D
Sbjct: 49 IAHGDPAVIAEIKKASPSKGVLREDFRPAEIAISYELGGASCLSVLTDVHFFKGHD 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,894,399
Number of Sequences: 539616
Number of extensions: 7308019
Number of successful extensions: 18338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 18251
Number of HSP's gapped (non-prelim): 70
length of query: 463
length of database: 191,569,459
effective HSP length: 121
effective length of query: 342
effective length of database: 126,275,923
effective search space: 43186365666
effective search space used: 43186365666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)