Query psy7398
Match_columns 463
No_of_seqs 229 out of 301
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:11:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705|consensus 100.0 2E-139 3E-144 1032.3 20.6 449 4-462 116-577 (580)
2 PF05830 NodZ: Nodulation prot 100.0 1.9E-28 4E-33 239.4 9.8 259 105-369 3-295 (321)
3 PF03254 XG_FTase: Xyloglucan 99.3 2.8E-11 6E-16 126.6 16.6 142 224-370 271-437 (476)
4 PF14604 SH3_9: Variant SH3 do 99.1 1.4E-10 3E-15 85.4 4.5 49 399-449 1-49 (49)
5 PF10250 O-FucT: GDP-fucose pr 99.0 6.5E-10 1.4E-14 113.8 7.2 137 228-375 170-345 (351)
6 PF01531 Glyco_transf_11: Glyc 98.9 8.1E-09 1.7E-13 104.1 12.8 229 95-369 23-266 (298)
7 KOG4225|consensus 98.9 1E-09 2.2E-14 111.8 2.9 55 397-451 435-489 (489)
8 PF00018 SH3_1: SH3 domain; I 98.7 1.2E-08 2.5E-13 74.6 4.0 48 398-445 1-48 (48)
9 PF07653 SH3_2: Variant SH3 do 98.6 7.3E-08 1.6E-12 72.5 4.5 52 397-450 2-54 (55)
10 smart00326 SH3 Src homology 3 98.5 2.3E-07 5.1E-12 68.7 5.4 55 396-451 4-58 (58)
11 cd00174 SH3 Src homology 3 dom 98.5 2.5E-07 5.5E-12 67.7 5.2 52 397-449 2-53 (54)
12 KOG4348|consensus 98.3 1.1E-07 2.4E-12 96.9 0.9 60 393-454 99-158 (627)
13 KOG3775|consensus 98.1 8.6E-07 1.9E-11 89.1 1.7 66 392-457 260-325 (482)
14 KOG1702|consensus 97.8 1.3E-05 2.9E-10 74.8 2.8 60 391-450 204-263 (264)
15 KOG1118|consensus 97.5 5.9E-05 1.3E-09 74.5 2.8 54 397-452 309-362 (366)
16 KOG2199|consensus 97.4 4.5E-05 9.8E-10 77.7 0.4 57 394-452 215-271 (462)
17 KOG2856|consensus 97.4 7.8E-05 1.7E-09 75.2 1.7 55 395-450 415-470 (472)
18 KOG4226|consensus 97.2 0.00023 5E-09 69.4 3.4 55 398-454 111-165 (379)
19 KOG1029|consensus 97.1 0.00024 5.1E-09 77.5 2.8 55 396-452 1055-1109(1118)
20 KOG4225|consensus 96.8 0.0012 2.6E-08 68.3 4.3 65 387-453 223-287 (489)
21 KOG1029|consensus 96.7 0.00094 2E-08 73.0 2.4 54 397-452 696-751 (1118)
22 KOG0162|consensus 96.6 0.0017 3.8E-08 70.7 3.5 55 395-451 1052-1106(1106)
23 KOG3523|consensus 96.5 0.00058 1.3E-08 73.1 -0.6 56 398-453 612-667 (695)
24 KOG2070|consensus 95.9 0.0045 9.9E-08 64.9 2.5 58 393-452 16-73 (661)
25 KOG3849|consensus 95.8 0.018 3.9E-07 56.6 6.1 69 289-373 298-368 (386)
26 KOG2546|consensus 95.5 0.0072 1.6E-07 62.4 2.0 54 398-453 427-480 (483)
27 KOG4348|consensus 95.4 0.011 2.4E-07 61.2 3.0 53 398-452 265-319 (627)
28 KOG2996|consensus 94.7 0.022 4.7E-07 61.1 3.0 51 399-451 810-862 (865)
29 KOG0199|consensus 93.9 0.042 9.1E-07 60.7 3.2 51 399-449 379-430 (1039)
30 KOG3875|consensus 93.8 0.021 4.6E-07 56.9 0.7 55 398-453 272-332 (362)
31 KOG4226|consensus 93.7 0.058 1.2E-06 53.0 3.4 106 331-453 144-251 (379)
32 KOG3655|consensus 93.1 0.043 9.2E-07 57.7 1.5 51 398-449 431-481 (484)
33 KOG0197|consensus 89.6 0.2 4.3E-06 53.4 2.1 67 395-461 12-85 (468)
34 KOG3632|consensus 89.2 0.33 7.2E-06 55.2 3.6 61 391-453 1135-1204(1335)
35 KOG2528|consensus 87.9 0.22 4.7E-06 52.2 1.1 54 398-452 6-60 (490)
36 KOG1264|consensus 87.7 0.28 6E-06 54.8 1.7 50 399-453 779-832 (1267)
37 KOG3632|consensus 85.1 1 2.2E-05 51.4 4.4 99 347-455 408-514 (1335)
38 KOG4773|consensus 83.9 0.2 4.3E-06 51.0 -1.6 55 395-451 176-230 (386)
39 KOG3565|consensus 80.0 0.63 1.4E-05 51.8 0.4 56 398-453 582-638 (640)
40 KOG3771|consensus 79.5 0.91 2E-05 48.0 1.4 51 398-449 404-459 (460)
41 KOG4575|consensus 79.3 2.1 4.5E-05 46.9 3.9 54 394-448 8-62 (874)
42 KOG1843|consensus 79.2 1.1 2.5E-05 46.5 2.0 108 341-450 346-472 (473)
43 KOG3601|consensus 76.9 1.4 3.1E-05 42.0 1.7 54 396-451 165-218 (222)
44 KOG1451|consensus 74.3 2.8 6E-05 45.7 3.2 56 394-451 756-812 (812)
45 KOG4278|consensus 71.8 3.6 7.8E-05 45.6 3.4 63 396-460 92-155 (1157)
46 KOG2996|consensus 71.5 3.2 7E-05 45.1 2.9 43 410-452 626-669 (865)
47 KOG4792|consensus 67.9 4.9 0.00011 38.9 3.1 51 399-451 232-284 (293)
48 cd02515 Glyco_transf_6 Glycosy 67.0 26 0.00057 34.9 8.0 106 249-373 35-153 (271)
49 KOG4792|consensus 63.3 4.1 8.9E-05 39.4 1.6 53 399-452 129-181 (293)
50 COG1083 NeuA CMP-N-acetylneura 62.1 42 0.00091 32.5 8.1 79 287-373 40-120 (228)
51 cd06533 Glyco_transf_WecG_TagA 58.6 95 0.0021 28.5 9.8 74 290-372 45-123 (171)
52 PF03808 Glyco_tran_WecB: Glyc 58.6 82 0.0018 29.0 9.4 75 290-373 47-126 (172)
53 KOG0515|consensus 52.0 10 0.00022 41.0 2.4 56 395-451 684-749 (752)
54 KOG2391|consensus 50.0 56 0.0012 33.6 7.1 60 5-69 215-274 (365)
55 PHA01750 hypothetical protein 48.0 73 0.0016 24.9 5.8 44 8-58 27-70 (75)
56 COG1212 KdsB CMP-2-keto-3-deox 46.6 25 0.00055 34.3 3.9 30 290-320 42-71 (247)
57 KOG3416|consensus 43.0 13 0.00028 32.8 1.3 30 412-441 61-90 (134)
58 PF04375 HemX: HemX; InterPro 40.8 2.3E+02 0.0049 29.6 10.4 54 45-99 97-150 (372)
59 PF04740 LXG: LXG domain of WX 37.6 2.5E+02 0.0055 26.1 9.4 94 5-99 96-193 (204)
60 KOG1318|consensus 34.7 1.7E+02 0.0036 31.2 8.0 89 5-97 228-318 (411)
61 COG1922 WecG Teichoic acid bio 34.1 2.7E+02 0.0059 27.6 9.1 61 290-359 107-171 (253)
62 KOG4429|consensus 33.9 19 0.00042 36.1 1.0 50 400-451 369-418 (421)
63 smart00743 Agenet Tudor-like d 33.7 45 0.00097 24.9 2.9 25 412-436 2-26 (61)
64 KOG0609|consensus 33.0 21 0.00045 38.8 1.1 51 399-450 219-280 (542)
65 KOG2264|consensus 32.8 2.1E+02 0.0045 31.7 8.5 76 12-99 79-154 (907)
66 KOG2776|consensus 29.6 43 0.00094 34.7 2.7 42 376-430 78-121 (398)
67 PF14603 hSH3: Helically-exten 28.8 79 0.0017 26.2 3.6 62 387-449 5-70 (89)
68 PF13614 AAA_31: AAA domain; P 28.5 1.2E+02 0.0026 26.5 5.2 39 106-144 1-39 (157)
69 PF02348 CTP_transf_3: Cytidyl 28.0 4.7E+02 0.01 24.1 9.5 74 289-372 38-118 (217)
70 COG3657 Uncharacterized protei 27.7 45 0.00098 28.0 2.0 45 67-111 6-53 (100)
71 KOG3849|consensus 26.9 40 0.00086 33.8 1.9 38 104-142 29-66 (386)
72 PF12732 YtxH: YtxH-like prote 26.8 2.9E+02 0.0063 21.6 6.6 29 5-33 23-51 (74)
73 COG4019 Uncharacterized protei 25.6 45 0.00098 29.5 1.8 38 253-308 16-53 (156)
74 cd00179 SynN Syntaxin N-termin 25.4 4.6E+02 0.0099 22.9 9.8 89 7-96 5-105 (151)
75 COG4985 ABC-type phosphate tra 25.2 3.2E+02 0.0068 26.9 7.5 21 80-100 225-245 (289)
76 PF04065 Not3: Not1 N-terminal 25.1 6.6E+02 0.014 24.6 11.3 73 23-99 140-217 (233)
77 smart00503 SynN Syntaxin N-ter 24.1 4.2E+02 0.009 21.9 10.5 89 7-96 7-106 (117)
78 TIGR00696 wecB_tagA_cpsF bacte 23.9 5.9E+02 0.013 23.6 9.9 72 291-372 48-124 (177)
79 PRK06975 bifunctional uroporph 22.4 5.5E+02 0.012 29.0 10.1 44 54-99 398-441 (656)
80 PF11642 Blo-t-5: Mite allerge 22.2 4.6E+02 0.0099 22.9 7.2 79 17-96 30-109 (118)
81 PF12745 HGTP_anticodon2: Anti 22.0 44 0.00095 33.5 1.2 57 348-404 4-67 (273)
82 PF14523 Syntaxin_2: Syntaxin- 21.7 4.4E+02 0.0096 21.4 9.7 58 39-96 28-88 (102)
83 PRK06995 flhF flagellar biosyn 21.2 1.1E+03 0.024 25.7 14.0 126 11-143 166-295 (484)
84 PF13864 Enkurin: Calmodulin-b 20.7 4.1E+02 0.0089 22.0 6.7 54 10-69 42-95 (98)
85 PF08239 SH3_3: Bacterial SH3 20.5 1.5E+02 0.0032 21.2 3.5 37 412-449 18-55 (55)
86 COG0024 Map Methionine aminope 20.2 90 0.002 31.0 2.9 32 399-432 75-107 (255)
87 PF03414 Glyco_transf_6: Glyco 20.2 1.5E+02 0.0032 30.6 4.6 139 247-418 97-248 (337)
No 1
>KOG3705|consensus
Probab=100.00 E-value=1.6e-139 Score=1032.30 Aligned_cols=449 Identities=50% Similarity=0.878 Sum_probs=439.5
Q ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhhhhH
Q psy7398 4 NNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESHD 83 (463)
Q Consensus 4 ~~~e~lrr~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~ 83 (463)
..||++||||.++|+||||++++|+.|+++.. ++|+..++++++-...+|++|||.|++.|.+.||.++||.+++..
T Consensus 116 ~dhE~~rRri~~~i~E~w~fl~Sel~kvr~~~---~~dl~e~~~~~LL~~~~h~rSlm~d~~~l~q~dG~e~wR~Kea~d 192 (580)
T KOG3705|consen 116 VDHEVQRRRIDDRIREMWYFLHSELGKVRKAA---SADLIENSTKILLETAEHMRSLMGDSAQLEQLDGSEEWRFKEATD 192 (580)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh---hhhHHhhHHHHHHhhHHHHHHHHhHHHHHHhccCcHHHHHhHHhH
Confidence 48999999999999999999999999999985 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceEEEEecCCccchHHHHHHHHHHHHHHhcCcEEEEecCCCcccCCCccccccccCCCC
Q psy7398 84 LSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTC 163 (463)
Q Consensus 84 L~~~vq~~I~~~QnP~dC~~ak~Lv~~~~~~~GfG~~lh~l~~~L~~A~~t~RtLiid~~~~~Y~~~gw~~~F~P~S~~C 163 (463)
||++|||||+++|||+||++||+|+|+++++||+||++||++||++.|++|.||||+...||.|+.+||+.+|+|+|++|
T Consensus 193 lt~lvqrri~~LQNPkdCs~AkkLVCnlnKgCGyGCQLHHVvYCfi~AyaTqRtliLks~gWrY~~gGWe~VF~pvS~~c 272 (580)
T KOG3705|consen 193 LTQLVQRRIEKLQNPKDCSEAKKLVCNLNKGCGYGCQLHHVVYCFITAYATQRTLILKSDGWRYSSGGWESVFKPVSKCC 272 (580)
T ss_pred HHHHHHHHHHHhcChHhhHHHhhheeeccCCcccccceeeeeEeeeeeeecceEEEEecCCceecCCChhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCC--CCceEEeeeeecCCCCCCccccccccccCCCCCCCCccccc------ccccCCcccccccCCc
Q psy7398 164 TSPEGASTSSWPGHD--ETQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNR------LWDWTDPPSYLFKPQT 235 (463)
Q Consensus 164 ~~~~~~~~~~W~~~~--~~~~v~~p~i~~~~~~~~f~~~~~p~~l~~~~~~~~~~l~r------~Ww~gq~~~yl~Rp~~ 235 (463)
.++...|+..|||.. +.|||.+||+|++.++|+|+|+++|++|. ++|.| +||.||+++|||||||
T Consensus 273 ~D~~~~nT~~wpg~~~~n~qVv~LpIvDSL~prPpyLPlAVPEdLa-------~rL~rlHgdP~vwwVgqFikYL~Rpqp 345 (580)
T KOG3705|consen 273 FDEAVGNTEAWPGAEPSNAQVVSLPIVDSLIPRPPYLPLAVPEDLA-------ERLTRLHGDPPVWWVGQFIKYLMRPQP 345 (580)
T ss_pred cccccccccCCCCCCCCCceEEEeecccccCCCCCCccccCcHHHH-------HHHHHhcCCCceeeHHHHHHHHhCCCh
Confidence 999988999999854 78999999999999999999999999999 88876 8999999999999999
Q ss_pred chHHHHhh----cCCCC-ceEEEEecCCCCCccccccChHHHHHHHHHHHHHHHhcCCCCcceEEEEcCChHHHHHHHHh
Q psy7398 236 KTPDFLSK----YGEKD-QLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEK 310 (463)
Q Consensus 236 ~~~~~i~~----~~f~~-~VGvHIRrgDK~~~Ea~~~~l~eYm~~ve~~~~~~~~~~~~~~~~ifLATDd~~v~~e~k~~ 310 (463)
+++++|++ ++|.+ +||||||||||+|+||++|+++|||.+||.||+-++.++.+..+|||||||||+|+.|+|++
T Consensus 346 ~t~~~l~~a~k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~k 425 (580)
T KOG3705|consen 346 ATQEKLDKALKSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNK 425 (580)
T ss_pred hhHHHHHHHHHhCCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhcc
Confidence 99999998 89999 99999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCChhhHHHHHHHhccCCCCCCceEEcccccccC
Q psy7398 311 YPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFG 390 (463)
Q Consensus 311 yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv~rl~~elr~t~~~d~~~~~~slD~~y~~~ 390 (463)
||+|.|+++++++.+|++++||+++|++|+++||++||++||+||||||+|||++||+|||+++||+.+|+||||+||||
T Consensus 426 YPnYe~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQVCRvaYEimQt~~pDa~~~FhSLDDIYYfG 505 (580)
T KOG3705|consen 426 YPNYEVIGDTEIAKTAQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQVCRVAYEIMQTSGPDAGSKFHSLDDIYYFG 505 (580)
T ss_pred CCCcEEeccHHHHHHhhccccchhhhhhheeeeeeeecccceEEEechHHHHHHHHHHHhccCCCcccccccccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCccCCCCCCCCC
Q psy7398 391 GQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQ 462 (463)
Q Consensus 391 g~~~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~~~~~p~~~~ 462 (463)
||++|+++||++|.|++.+||+|+|||+|+|+|||||||++|+|.+|++.||||+|||++.+..+.+|+|++
T Consensus 506 GQnAHn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek~~t~k~ply~~ 577 (580)
T KOG3705|consen 506 GQNAHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREKFITIKIPLYVL 577 (580)
T ss_pred CccccceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeeeEEEeeecchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.95 E-value=1.9e-28 Score=239.36 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=140.2
Q ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHhcCcEEEEecCCCcccC----CCccccccccCC------CCCCCCCCCCCCC
Q psy7398 105 KKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYAR----GGWEEVFEPVSK------TCTSPEGASTSSW 174 (463)
Q Consensus 105 k~Lv~~~~~~~GfG~~lh~l~~~L~~A~~t~RtLiid~~~~~Y~~----~gw~~~F~P~S~------~C~~~~~~~~~~W 174 (463)
++++|. +..|||..|..++.|+.+|..|||+|+|||+++.|.. +.|..+|+|+.+ .|.++.. ....
T Consensus 3 r~~~~r--~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f~~ffepv~~i~~~~~~~~d~i~--~~~~ 78 (321)
T PF05830_consen 3 RFVVSR--RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAFPVFFEPVEDIAGVRVICDDRIN--QFSF 78 (321)
T ss_dssp -EEEEE----S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSHHHHB---SEETTEEEE-SGGGG--T---
T ss_pred ceEEEe--ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccCCcccchhhhhcCceeEecchhh--hhcC
Confidence 688888 7999999999999999999999999999999999974 567788999753 2554432 2222
Q ss_pred CCCCCCceEEeeeeecCCCCC--Cccc-cccccccCCCCCCCCccc---cc--ccccCCcccc----cccCCcchHHHHh
Q psy7398 175 PGHDETQVIKLPVIDSNQSAR--PLIS-SLHSERLGTPTIPTSRRS---NR--LWDWTDPPSY----LFKPQTKTPDFLS 242 (463)
Q Consensus 175 ~~~~~~~~v~~p~i~~~~~~~--~f~~-~~~p~~l~~~~~~~~~~l---~r--~Ww~gq~~~y----l~Rp~~~~~~~i~ 242 (463)
+|+--..+++.|-++..++.. .|.. -.+. ++++..-...... +. .|-..+-+.. .++|+++++++|+
T Consensus 79 ~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~-~lf~~~~d~~a~~vv~d~c~~~~c~~~aeR~if~slkpR~eIqarID 157 (321)
T PF05830_consen 79 PGPFFPAWWNKPSIDCVYRPDEQIFRERDELR-QLFQSQEDHEANTVVCDACLMWRCDEEAEREIFSSLKPRPEIQARID 157 (321)
T ss_dssp -SSEESGGGGS-GGGGS---HHHHHHHHHHHH-HHHHSSS--S-SEEEE-S--TTSS-HHHHHHHHHHS-B-HHHHHHHH
T ss_pred CCCcChhHHhCCCcceecCChHHHhhhhHHHH-HHhhcccccccchhhhHhhcCCcchhHHHHHHHHhCCCCHHHHHHHH
Confidence 222111222234333332211 0110 0000 0000000000000 00 4555543333 4889999999999
Q ss_pred h---cCCCC--ceEEEEecCCCCC--ccccc-cChHHHHHHHHHHHHHHHhcCCCCcceEEEEcCChHHHHHHHHhCCCc
Q psy7398 243 K---YGEKD--QLSENLYCWDKVG--TEAAF-HHVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEKYPQY 314 (463)
Q Consensus 243 ~---~~f~~--~VGvHIRrgDK~~--~Ea~~-~~l~eYm~~ve~~~~~~~~~~~~~~~~ifLATDd~~v~~e~k~~yp~~ 314 (463)
. ..|.+ +||||||+|+-.. .++.+ .+-+.+|.+|...+++...+......+||||||+++|+++++++||+.
T Consensus 158 ~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeVid~fr~~FPdi 237 (321)
T PF05830_consen 158 AIYREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEVIDQFRKKFPDI 237 (321)
T ss_dssp HHHHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHHHHHHHHHSTTE
T ss_pred HHHHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHHHHHHHHHCCCe
Confidence 9 45665 9999999993321 13333 344459999999988765555566899999999999999999999996
Q ss_pred EEEeCCccc-ccc-ccCCCC-ChhhHHHHHHHHHHhhcCCeEEE-ccCChhhHHHHHHH
Q psy7398 315 TVLGDPSIA-LTA-SVGRRY-SESSLMGIITDIHFLSNCDFLVC-TFSSQICRVAYEYM 369 (463)
Q Consensus 315 ~~~~~~~~~-~~a-~~~~R~-s~~sl~~~l~Dl~lLs~cD~~Vg-T~sSnv~rl~~elr 369 (463)
..+ ..... ..+ .+.... ..++..++++||+|||+||++|+ |.+|.+||++.-++
T Consensus 238 iti-~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~ 295 (321)
T PF05830_consen 238 ITI-PKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFV 295 (321)
T ss_dssp E-----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH-
T ss_pred EEc-ccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhc
Confidence 444 32221 111 132211 23566789999999999999995 99999999999887
No 3
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=99.34 E-value=2.8e-11 Score=126.63 Aligned_cols=142 Identities=13% Similarity=0.185 Sum_probs=96.8
Q ss_pred CCcccccccCCcchHHHHhh-----cCCCC-ceEEEEecCCCCCccccccChHHHHHHHHHHHHHHH----h---c----
Q psy7398 224 TDPPSYLFKPQTKTPDFLSK-----YGEKD-QLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLA----L---K---- 286 (463)
Q Consensus 224 gq~~~yl~Rp~~~~~~~i~~-----~~f~~-~VGvHIRrgDK~~~Ea~~~~l~eYm~~ve~~~~~~~----~---~---- 286 (463)
-++.+|||.|...+-..|.. +.-.+ .|||+||.-+... .+.+.+|+.|-.=..+.. . .
T Consensus 271 hhL~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~-----~~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~ 345 (476)
T PF03254_consen 271 HHLGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKP-----GPFQHVLDQILSCTQQEKLLPEVVDTQEPAA 345 (476)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCC-----CcchhHHHHHHHHHhhcccCCCccccccccc
Confidence 37899999999999999988 33344 9999999998642 255667777654222210 0 0
Q ss_pred ----CCCCcceEEEEcCChHHHHHHHHhCCCcEEEeCCccc---cccccCCCCChh-hHHHHHHHHHHhhcCCeEEEccC
Q psy7398 287 ----QTVDVKRVYVATDDPQVLTEIKEKYPQYTVLGDPSIA---LTASVGRRYSES-SLMGIITDIHFLSNCDFLVCTFS 358 (463)
Q Consensus 287 ----~~~~~~~ifLATDd~~v~~e~k~~yp~~~~~~~~~~~---~~a~~~~R~s~~-sl~~~l~Dl~lLs~cD~~VgT~s 358 (463)
.....+.|+|++..+.-.++++..|-+....+..... .+..-..+..+. .-..+++||+|||-||.+|-|..
T Consensus 346 ~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~ 425 (476)
T PF03254_consen 346 SSSSKSQKSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGW 425 (476)
T ss_pred cccCCCCceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCC
Confidence 1135688999999999999999988553221111000 011111222222 22569999999999999999999
Q ss_pred ChhhHHHHHHHh
Q psy7398 359 SQICRVAYEYMN 370 (463)
Q Consensus 359 Snv~rl~~elr~ 370 (463)
|++|.+|..|-.
T Consensus 426 STFGYVAqgLgG 437 (476)
T PF03254_consen 426 STFGYVAQGLGG 437 (476)
T ss_pred CCchhHHHhhcC
Confidence 999999999853
No 4
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.07 E-value=1.4e-10 Score=85.44 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=44.7
Q ss_pred EEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeecccee
Q psy7398 399 AVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 399 ~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~ 449 (463)
|+++|.|+.++||+|++||+|.|.....+||+.|+| +++.|+||+++|+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence 789999999999999999999999889999999997 9999999999986
No 5
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.99 E-value=6.5e-10 Score=113.77 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=69.4
Q ss_pred cccccCCcchHHHHhh----cC-CCC-ceEEEEecC-CCC---------------------------Cc-cccccChHHH
Q psy7398 228 SYLFKPQTKTPDFLSK----YG-EKD-QLSENLYCW-DKV---------------------------GT-EAAFHHVDEY 272 (463)
Q Consensus 228 ~yl~Rp~~~~~~~i~~----~~-f~~-~VGvHIRrg-DK~---------------------------~~-Ea~~~~l~eY 272 (463)
+..+|+++.+++..++ +. -.+ .||||+|+| |-. .. +...-..++.
T Consensus 170 ~r~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 249 (351)
T PF10250_consen 170 QRYLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKSINPEKKRRNGCCPSTPQE 249 (351)
T ss_dssp GGG--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGGTT-----HHHHS--HHHH
T ss_pred eEEEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhccccccchhhhhcCCCCChHHH
Confidence 4589999998887777 22 244 999999999 750 00 0111112222
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEcCCh----HHHHHHHHhCCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhh
Q psy7398 273 MAGVEEYYKQLALKQTVDVKRVYVATDDP----QVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLS 348 (463)
Q Consensus 273 m~~ve~~~~~~~~~~~~~~~~ifLATDd~----~v~~e~k~~yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs 348 (463)
+..+...... ...+.||||||+. ..++.+++.+|+.. ...... ....-.+... -..+++|.++++
T Consensus 250 ~~~i~~~~~~------~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~--~~~~~~-~~~~~~~~~~--~~~a~vD~~i~~ 318 (351)
T PF10250_consen 250 AKQILRALGK------NNTTVVYIATDEIYGGERRLDPLKNMFPNVV--TKDDLL-SHEELEPLND--DQLAMVDQEICS 318 (351)
T ss_dssp HHHHHHHHHH------HT-SEEEEEESS-----------HHHHHHHH--GGGT---EE--S-------S--HHHHHHHHH
T ss_pred HHHHHHHhcc------CCCCEEEEecCcccccchhHHHHHHHhhhhE--eccccC-CHHHhhhccc--cchhHHHHHHHh
Confidence 2222222221 2469999999993 24566666665432 110000 0000011111 234889999999
Q ss_pred cCCeEEEccCChhhHHHHHHHhccCCC
Q psy7398 349 NCDFLVCTFSSQICRVAYEYMNTMFPD 375 (463)
Q Consensus 349 ~cD~~VgT~sSnv~rl~~elr~t~~~d 375 (463)
+||+||||..|+|+..|.+.|...+..
T Consensus 319 ~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 319 RSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp HSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred cCCEEEecCcchhHHHhhcccCcCCCC
Confidence 999999999999999999999888754
No 6
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=98.94 E-value=8.1e-09 Score=104.07 Aligned_cols=229 Identities=15% Similarity=0.147 Sum_probs=119.5
Q ss_pred hcCCCCCCCCceEEEEecCCccchHHHHHHHHHHHHHHhcCcEEEEecCCCcccCCCccccccccCCCCCCCCCCCCCCC
Q psy7398 95 LQNPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSW 174 (463)
Q Consensus 95 ~QnP~dC~~ak~Lv~~~~~~~GfG~~lh~l~~~L~~A~~t~RtLiid~~~~~Y~~~gw~~~F~P~S~~C~~~~~~~~~~W 174 (463)
.|+.++ +.+.+.+...+|||++|..++..+.+|...+++.++......+..+ +...+.-... . .. ....|
T Consensus 23 ~~~~~~----~~~~~~i~~~g~LGNqmfqya~l~~lak~~~~~~~i~~~~~~~l~~-~~~~~~~~~~-~--~~--~~~~~ 92 (298)
T PF01531_consen 23 LQKLPR----KYLMSTINLNGRLGNQMFQYASLYGLAKLNGRTAFIPISMHRYLHP-FRITLPILNE-S--FP--IRIPW 92 (298)
T ss_pred hhhccC----ccceEEEEEcchHHHHHhHHHHHHHHHHhcCCccccchHHHHHhhh-hhhcccccch-h--hh--hhhhh
Confidence 454444 5667777679999999999999999998888887766533222222 2221111110 0 00 00001
Q ss_pred CCCCCCceEEeeeeecCCCCCCccccccccccCCCCCCCCcccccccccCCcccccccCCcchHHHHhh------cC---
Q psy7398 175 PGHDETQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQTKTPDFLSK------YG--- 245 (463)
Q Consensus 175 ~~~~~~~~v~~p~i~~~~~~~~f~~~~~p~~l~~~~~~~~~~l~r~Ww~gq~~~yl~Rp~~~~~~~i~~------~~--- 245 (463)
..........-.. ..... ..+....+|.. .... ..-.-|..+|.....+.+++.++. ..
T Consensus 93 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~---------~~~y-~~Gy~q~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 160 (298)
T PF01531_consen 93 INYFLKCFMKKNY-FILKN-EYFRFLGYPNS---------KNYY-LHGYFQSIKYFFDIKDELREEFKEFLRELNLEIII 160 (298)
T ss_pred hhhhHHHHhhccc-ccccc-ccchhhcccCc---------CCeE-EEeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000000 00000 00001111100 0000 010125566766666666665554 11
Q ss_pred CCC-ceEEEEecCCCCCcccc--cc--ChHHHHHHHHHHHHHHHhcCCCCcceEEEEcCChHHHHHH-HHhCCCcEEEeC
Q psy7398 246 EKD-QLSENLYCWDKVGTEAA--FH--HVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEI-KEKYPQYTVLGD 319 (463)
Q Consensus 246 f~~-~VGvHIRrgDK~~~Ea~--~~--~l~eYm~~ve~~~~~~~~~~~~~~~~ifLATDd~~v~~e~-k~~yp~~~~~~~ 319 (463)
-.. .|||||||||=+..... .+ .-.+|...|-+++.+ ......+|+.|||++-.++. ....+...|...
T Consensus 161 ~~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~-----~~~~~~f~ifSDD~~w~k~~l~~~~~~~~~~~~ 235 (298)
T PF01531_consen 161 KNSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIRE-----KVKNPKFFIFSDDIEWCKENLKFSNGDVYFSGN 235 (298)
T ss_pred cCCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHH-----hCCCCEEEEEcCCHHHHHHHHhhcCCcEEEECC
Confidence 223 89999999998632211 22 223566655555543 12456899999998865543 322222222111
Q ss_pred CccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCChhhHHHHHHH
Q psy7398 320 PSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQICRVAYEYM 369 (463)
Q Consensus 320 ~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv~rl~~elr 369 (463)
.....|+++||.||++|.| .|++|--++-|-
T Consensus 236 ------------------~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~ 266 (298)
T PF01531_consen 236 ------------------NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLS 266 (298)
T ss_pred ------------------CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHC
Confidence 2366899999999999999 688999998885
No 7
>KOG4225|consensus
Probab=98.86 E-value=1e-09 Score=111.84 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=53.3
Q ss_pred EEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 397 HVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 397 ~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
++|+|+|.|+.++||+|+-||+|.|...+.|||+-|+++|||++|.||.++|++.
T Consensus 435 yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 435 YRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred ceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCccccccC
Confidence 7899999999999999999999999999999999999999999999999999874
No 8
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.72 E-value=1.2e-08 Score=74.63 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=45.0
Q ss_pred EEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeec
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT 445 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~ 445 (463)
+|+|++.+..++||+++.||+|.|.....+||+.|.+.+|++.|++|+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 589999999999999999999999988888999999999999999996
No 9
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.57 E-value=7.3e-08 Score=72.47 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=46.2
Q ss_pred EEEEccCCCCCCCcccccCCCEEEec-CceeceeeeeEeccCCeeeeeeccceee
Q psy7398 397 HVAVLPHTPKDPSEMELVVGDKISVA-GNHWNGYSKGTNLRTNQLALYPTFKVVP 450 (463)
Q Consensus 397 ~~~i~~~~~~~~~El~l~~GD~i~~~-~~~~~g~~~G~n~rt~~~gl~P~~kv~~ 450 (463)
.+|+.+|.+..++||+++.||+|.|. ...++||+.|.+ +|+.|+||+.+|++
T Consensus 2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEE 54 (55)
T ss_dssp EEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEE
T ss_pred EEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEE
Confidence 46899999999999999999999998 677889999999 89999999999986
No 10
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.49 E-value=2.3e-07 Score=68.72 Aligned_cols=55 Identities=29% Similarity=0.346 Sum_probs=50.0
Q ss_pred eEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 396 ~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
..+|+++|.+..++||.|++||+|.+.....+||+.|++.+ ++.|++|+.+|+.+
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v~~~ 58 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVEEI 58 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHEEEC
Confidence 45699999999999999999999999888789999999988 99999999998753
No 11
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.47 E-value=2.5e-07 Score=67.71 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=48.4
Q ss_pred EEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeecccee
Q psy7398 397 HVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 397 ~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~ 449 (463)
.+|+++|.+..++||.|++||+|.+.....+||+.|++.++ +.|++|+.+|+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~-~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGG-KRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCC-CEEEEccccCc
Confidence 36899999999999999999999998888999999999988 99999999876
No 12
>KOG4348|consensus
Probab=98.35 E-value=1.1e-07 Score=96.91 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=53.3
Q ss_pred cceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCccC
Q psy7398 393 ISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVET 454 (463)
Q Consensus 393 ~~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~~ 454 (463)
..+...|.++|-|+..+||+|++||+|++.+.--+||++|+-. |+.||||+++|+.+..+
T Consensus 99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Ln--gk~GmFPsNFVkel~~~ 158 (627)
T KOG4348|consen 99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLN--GKVGMFPSNFVKELPTP 158 (627)
T ss_pred cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceec--CcccccchhhceecCCC
Confidence 3556668899999999999999999999999999999999755 99999999999987654
No 13
>KOG3775|consensus
Probab=98.13 E-value=8.6e-07 Score=89.12 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=57.4
Q ss_pred ccceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCccCCCC
Q psy7398 392 QISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADF 457 (463)
Q Consensus 392 ~~~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~~~~~ 457 (463)
.+..-|+|+..-.|+-++||+|++||-|.|...--|=|++|+|+|||+.|+||++++-++.-+..-
T Consensus 260 ~qe~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~eed 325 (482)
T KOG3775|consen 260 EQEQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPEED 325 (482)
T ss_pred hhchhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCchhh
Confidence 345567788888899999999999999999988889999999999999999999999887655443
No 14
>KOG1702|consensus
Probab=97.79 E-value=1.3e-05 Score=74.76 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=54.3
Q ss_pred cccceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceee
Q psy7398 391 GQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450 (463)
Q Consensus 391 g~~~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~ 450 (463)
|..++.+.|+|+|.+..++|+.++-||-|...-...|||.+|+-.|||.+||.|+++++-
T Consensus 204 ~~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 204 SCTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CCCCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 334477889999999999999999999998888889999999999999999999999864
No 15
>KOG1118|consensus
Probab=97.49 E-value=5.9e-05 Score=74.51 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=44.7
Q ss_pred EEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 397 HVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 397 ~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
-+|+|+-.|++++||+++.||+|.+....-.+||-|.- -|++||||.++|....
T Consensus 309 cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 309 CRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVLV 362 (366)
T ss_pred heeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEec
Confidence 34999999999999999999999997666666666653 3459999999998764
No 16
>KOG2199|consensus
Probab=97.38 E-value=4.5e-05 Score=77.65 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=44.0
Q ss_pred ceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 394 SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 394 ~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
.+..+|+|+-.+..++||+++.||+|.|...-.--|++|.|.| ..||||+++|++.+
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~--~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHR--GIGLFPSNFVTADL 271 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCC--cccccchhhhhhhh
Confidence 4556699999999999999999999998443333344444443 38999999999988
No 17
>KOG2856|consensus
Probab=97.35 E-value=7.8e-05 Score=75.16 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=47.1
Q ss_pred eeEEEEccCCCCCCCcccccCCCEEEecCce-eceeeeeEeccCCeeeeeeccceee
Q psy7398 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNH-WNGYSKGTNLRTNQLALYPTFKVVP 450 (463)
Q Consensus 395 ~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~-~~g~~~G~n~rt~~~gl~P~~kv~~ 450 (463)
...+|+|+|.+...+||.++.||.|.+.+.. --||.+|+ +-.|+.||||+++|+-
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Gr-l~~G~vGLyPAnYVe~ 470 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGR-LDSGRVGLYPANYVEC 470 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCcccccccccc-ccCCcccccchhhhhc
Confidence 5566999999999999999999999986654 45999998 5568999999999964
No 18
>KOG4226|consensus
Probab=97.24 E-value=0.00023 Score=69.35 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=50.0
Q ss_pred EEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCccC
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVET 454 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~~ 454 (463)
+|-+.|.|+.++||.|-+|+.|.|.....|||++|-. .|+.|.||+++|.+..+.
T Consensus 111 vVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 111 VVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred EEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceehhccc
Confidence 4568999999999999999999999999999999976 799999999999987654
No 19
>KOG1029|consensus
Probab=97.14 E-value=0.00024 Score=77.50 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=43.0
Q ss_pred eEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 396 ~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
..+|+|+|.++..|||.++.||+|.|.+.----|+.|. |.|++||||+++|....
T Consensus 1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge--~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGE--RNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred eeEEeeccccCCcccccccCCCEEEecCCCChhhhccc--ccCccccCccccccccc
Confidence 34599999999999999999999999655444444443 23779999999996544
No 20
>KOG4225|consensus
Probab=96.81 E-value=0.0012 Score=68.29 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=52.1
Q ss_pred cccCcccceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 387 YYFGGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 387 y~~~g~~~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
+...-+......|+++..|++..||.|++||+|.+...-...||-|. +-|+.|+||+++|+.+..
T Consensus 223 r~~~~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGE--hhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 223 RRKTEKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGE--HHGRVGIFPASYVEILTP 287 (489)
T ss_pred CCCCccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeee--ecceecceechheeecCc
Confidence 44455566668899999999999999999999998666666666665 345699999999998765
No 21
>KOG1029|consensus
Probab=96.66 E-value=0.00094 Score=73.02 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=45.6
Q ss_pred EEEEccCCCCCCCcccccCCCEEEecCceec--eeeeeEeccCCeeeeeeccceeeCc
Q psy7398 397 HVAVLPHTPKDPSEMELVVGDKISVAGNHWN--GYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 397 ~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~--g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
++|+|+..+++++||.+.|||+|.|...+-- ||..|.- | |++|.||.++|+.+.
T Consensus 696 yrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel-~-gktGWFPenyvEki~ 751 (1118)
T KOG1029|consen 696 YRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGEL-R-GKTGWFPENYVEKIP 751 (1118)
T ss_pred EeeecccccCCcccccccCCCEEEEehhccCCccccccee-c-cccCcCcHHHHhhcc
Confidence 5699999999999999999999999766544 8988853 2 789999999997554
No 22
>KOG0162|consensus
Probab=96.55 E-value=0.0017 Score=70.72 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=49.4
Q ss_pred eeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 395 ~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
...+|+|++..++.+||++++||+|++...--.||+.|. -.++.|+||+.+|++.
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk--~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGK--LNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhc--cCCccccccccccccC
Confidence 556799999999999999999999999888888999998 5588999999999863
No 23
>KOG3523|consensus
Probab=96.47 E-value=0.00058 Score=73.05 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=52.4
Q ss_pred EEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
.++-+|.|..+||+.|+.||++.|....-|||++|.-+|-|..|.||+.+|+.+..
T Consensus 612 ~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 612 QCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred heeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 37789999999999999999999999999999999999999999999999988764
No 24
>KOG2070|consensus
Probab=95.90 E-value=0.0045 Score=64.91 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=43.2
Q ss_pred cceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 393 ISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 393 ~~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
..-...|-++..-...||+.+.+||+|.|....-.||+-|+- .|++|.||+++|+.+-
T Consensus 16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTl--ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTL--NGRTGWFPSNYVREIK 73 (661)
T ss_pred CceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccc--cCccCccchHHHHHHh
Confidence 344445667777778999999999999997666666666652 2459999999997654
No 25
>KOG3849|consensus
Probab=95.83 E-value=0.018 Score=56.57 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhCCCcEE--EeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCChhhHHHH
Q psy7398 289 VDVKRVYVATDDPQVLTEIKEKYPQYTV--LGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQICRVAY 366 (463)
Q Consensus 289 ~~~~~ifLATDd~~v~~e~k~~yp~~~~--~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv~rl~~ 366 (463)
.+.+.||||||+...++|+.+.---+.| ...+ . ..+-+|+++|.++|.|||..-|+++-.+-
T Consensus 298 ~dakSVfVAsDs~hmi~Eln~aL~~~~i~vh~l~-------------p---dd~y~dLaIlGqadhFiGNCvSsfsafvK 361 (386)
T KOG3849|consen 298 GDAKSVFVASDSDHMIDELNEALKPYEIEVHRLE-------------P---DDMYTDLAILGQADHFIGNCVSSFSAFVK 361 (386)
T ss_pred cccceEEEeccchhhhHHHHHhhcccceeEEecC-------------c---ccchhhhhhhcccchhhhhhHHHHHHHHh
Confidence 3679999999999999999853322222 2111 0 12558999999999999999999998888
Q ss_pred HHHhccC
Q psy7398 367 EYMNTMF 373 (463)
Q Consensus 367 elr~t~~ 373 (463)
.=|...+
T Consensus 362 RERD~~G 368 (386)
T KOG3849|consen 362 RERDHAG 368 (386)
T ss_pred hhhcccC
Confidence 7775544
No 26
>KOG2546|consensus
Probab=95.47 E-value=0.0072 Score=62.45 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=48.3
Q ss_pred EEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
+|||+|.+...+|+.+..|-+|.|..+..||||.|.-- +-+||||.+||.++..
T Consensus 427 v~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~--~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 427 VAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQD--GVTGLFPGNYVEPLKA 480 (483)
T ss_pred HhhcccccccccccccccccEEEEEEecCCcchhheec--CcceeccCcccccccc
Confidence 48999999999999999999999999999999999744 3499999999998754
No 27
>KOG4348|consensus
Probab=95.37 E-value=0.011 Score=61.17 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=43.6
Q ss_pred EEEccCCCCCCCcccccCCCEEEe-cCceec-eeeeeEeccCCeeeeeeccceeeCc
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISV-AGNHWN-GYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~-~~~~~~-g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
.|++.|.|+..+||.|+.||+|.. ..++-+ ||+.|.- .|+.|+||-++|+-+.
T Consensus 265 rv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 265 RVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVELVQ 319 (627)
T ss_pred eeeeeecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhhhcC
Confidence 488999999999999999999987 455666 8888853 2679999999997554
No 28
>KOG2996|consensus
Probab=94.72 E-value=0.022 Score=61.06 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=39.3
Q ss_pred EEccCCCCCCCcccccCCCEEEecCc--eeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 399 AVLPHTPKDPSEMELVVGDKISVAGN--HWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 399 ~i~~~~~~~~~El~l~~GD~i~~~~~--~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
|-|+-.+++..|++|+.||+|.+... .-.||++|.- .|+.|.||+.+|++-
T Consensus 810 arYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 810 ARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEED 862 (865)
T ss_pred eccccCCCchhhcccccCCEEEEehhccccCceeccee--cCccccccccccccc
Confidence 34677778888999999999988543 3458888842 255999999999874
No 29
>KOG0199|consensus
Probab=93.93 E-value=0.042 Score=60.66 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=42.7
Q ss_pred EEccCCCCCCCcccccCCCEEEecCceecee-eeeEeccCCeeeeeecccee
Q psy7398 399 AVLPHTPKDPSEMELVVGDKISVAGNHWNGY-SKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 399 ~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~-~~G~n~rt~~~gl~P~~kv~ 449 (463)
|.-.++....+-|.|+.||.|.|..+--.|| ++|-|.||++.|.||..-|.
T Consensus 379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 4444555567999999999999987776675 89999999999999999887
No 30
>KOG3875|consensus
Probab=93.85 E-value=0.021 Score=56.93 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=43.8
Q ss_pred EEEccCCCCCCCcccccCCCEEEec------CceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVA------GNHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~------~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
.|+|+--++++.||.|+.||++.|+ ++..+||. +..+-.+.+|++|.++||-+-.
T Consensus 272 rA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~-lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 272 RALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWL-LATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCccee-eeeccCCeeeeeehhhhhhhhc
Confidence 4889999999999999999999984 44455775 4444678899999999986543
No 31
>KOG4226|consensus
Probab=93.74 E-value=0.058 Score=53.01 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=73.3
Q ss_pred CCChhhHHHHHHHHHHhhcCCeEEEccCChhhHHHHHHHhccCCCCCCceEEcccccccCcccceeEEEEccCCCCCCCc
Q psy7398 331 RYSESSLMGIITDIHFLSNCDFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSE 410 (463)
Q Consensus 331 R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv~rl~~elr~t~~~d~~~~~~slD~~y~~~g~~~~~~~~i~~~~~~~~~E 410 (463)
|-+.++-.|.+-.-++.-+||--.|..-|-.++=.+.+- .++ =+++.-|+.+|+|+....+..|
T Consensus 144 rG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a-----------~n~-----~~s~vl~vVvaLYsFsssndeE 207 (379)
T KOG4226|consen 144 RGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASA-----------SNG-----QGSRVLHVVVALYSFSSSNDEE 207 (379)
T ss_pred ecccCCeeccccccceehhccccccCCccceecchhhcc-----------cCC-----CCceEEEEEEEEecccCCChhh
Confidence 334455556666666677777666655554443222111 111 1266677888999999999999
Q ss_pred ccccCCCEEEecC--ceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 411 MELVVGDKISVAG--NHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 411 l~l~~GD~i~~~~--~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
|.+++||.++|.. .+---|++-+|.| |++||.|.++|..+.+
T Consensus 208 LsFeKGerleivd~Pe~DPdWwkarn~~-G~vGLVPrNYv~vl~d 251 (379)
T KOG4226|consen 208 LSFEKGERLEIVDKPENDPDWWKARNAR-GQVGLVPRNYVVVLSD 251 (379)
T ss_pred cccccCceeEeccCCCCCchHHhhcccC-CccceeecceEEEecc
Confidence 9999999999843 3444689999988 8999999999986643
No 32
>KOG3655|consensus
Probab=93.09 E-value=0.043 Score=57.72 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=44.8
Q ss_pred EEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeecccee
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~ 449 (463)
.|+|+|.+.+..||...++|+|.+....-.||+.|.-.+ |..||||+++|+
T Consensus 431 ~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pd-G~~glfPaNyV~ 481 (484)
T KOG3655|consen 431 RALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPD-GEVGLFPANYVE 481 (484)
T ss_pred cccccccccCCcccccCCccccccccccCCccccccCCC-CCcCcccccccc
Confidence 488999999999999999999988777678999888754 799999999886
No 33
>KOG0197|consensus
Probab=89.55 E-value=0.2 Score=53.40 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=54.1
Q ss_pred eeEEEEccCCCCCCCcccccCCCEEEecCceec-eeeeeEeccCCeeeeeeccceeeC------ccCCCCCCCC
Q psy7398 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWN-GYSKGTNLRTNQLALYPTFKVVPR------VETADFPTYP 461 (463)
Q Consensus 395 ~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~-g~~~G~n~rt~~~gl~P~~kv~~~------~~~~~~p~~~ 461 (463)
...+|.|++.++++++|.++.||.+....+..+ .|++-+++-++..|+.|+++|.+. ...-.+|-|.
T Consensus 12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~ 85 (468)
T KOG0197|consen 12 TIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFF 85 (468)
T ss_pred ceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchh
Confidence 356799999999999999999999555555554 488888888999999999999987 5555566554
No 34
>KOG3632|consensus
Probab=89.22 E-value=0.33 Score=55.18 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=49.3
Q ss_pred cccceeEEEEccCCCCC--------CCcccccCCCEEEecCc-eeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 391 GQISRIHVAVLPHTPKD--------PSEMELVVGDKISVAGN-HWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 391 g~~~~~~~~i~~~~~~~--------~~El~l~~GD~i~~~~~-~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
-+..+.-+|+.+|.|.. +.||.++.||||.|.|. --||||.|.- .++.|+.|.+.|.+...
T Consensus 1135 ~lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~~v 1204 (1335)
T KOG3632|consen 1135 ALPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQPV 1204 (1335)
T ss_pred cCcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccccC
Confidence 35677788999999883 67999999999999986 4679998842 24589999999988654
No 35
>KOG2528|consensus
Probab=87.91 E-value=0.22 Score=52.16 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=45.8
Q ss_pred EEEccCCCCCCCcccccCCCEEEe-cCceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISV-AGNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~-~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
+|+|+-......|+.+..||++-+ ...+-.||.-|.|-| +..||||+.+|+-..
T Consensus 6 RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsr-ge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 6 RAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSR-GERGLFPASYVEVTR 60 (490)
T ss_pred hhhcchhhcccccccccccceeeecCcccccccccCCCcc-CccCCCcccceeeec
Confidence 466666666788999999999987 467999999999998 899999999998654
No 36
>KOG1264|consensus
Probab=87.71 E-value=0.28 Score=54.83 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=41.3
Q ss_pred EEccCCCCCCCcccccCCCEEEecC----ceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 399 AVLPHTPKDPSEMELVVGDKISVAG----NHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 399 ~i~~~~~~~~~El~l~~GD~i~~~~----~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
|+|+|+++.++||+.-.|-+|.+.. .+|.|=|+|. ..|.||+++|++...
T Consensus 779 AL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~-----iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 779 ALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGR-----IQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhccccCCcccccccccceeEeeeccCCceeecccccc-----eeeeccHHHhhhhcc
Confidence 8999999999999999999999854 4555555443 689999999998765
No 37
>KOG3632|consensus
Probab=85.07 E-value=1 Score=51.44 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=67.9
Q ss_pred hhcCCeEEEccCChhhHHHHHHHhccCCCC-CCceEEcccccccCcccceeEEEEccCCC------CCCCcccccCCCEE
Q psy7398 347 LSNCDFLVCTFSSQICRVAYEYMNTMFPDA-SMQYKSLDDIYYFGGQISRIHVAVLPHTP------KDPSEMELVVGDKI 419 (463)
Q Consensus 347 Ls~cD~~VgT~sSnv~rl~~elr~t~~~d~-~~~~~slD~~y~~~g~~~~~~~~i~~~~~------~~~~El~l~~GD~i 419 (463)
|..|-.|-+-..|.+|++=..+-.-...|. +.. . .+.-.+.-.|.|+|+| +.+.|+.|-.|+.|
T Consensus 408 lps~Ptf~~dtaSev~~le~dsvSl~l~~p~S~~--------r-~~gk~q~~~arySynPFegpNenpeaelpltAg~yi 478 (1335)
T KOG3632|consen 408 LPSNPTFHGDTASEVKVLEFDSVSLGLPDPPSNV--------R-VEGKAQPFTARYSYNPFEGPNENPEAELPLTAGYYI 478 (1335)
T ss_pred CCCCCccccccccceeeccchhhhcccCCCcccc--------c-ccCccceEEEEEeccCCcCCCCCCccccccccceEE
Confidence 444555555556666665544433333333 210 1 1223445558899998 35789999999999
Q ss_pred EecCce-eceeeeeEeccCCeeeeeeccceeeCccCC
Q psy7398 420 SVAGNH-WNGYSKGTNLRTNQLALYPTFKVVPRVETA 455 (463)
Q Consensus 420 ~~~~~~-~~g~~~G~n~rt~~~gl~P~~kv~~~~~~~ 455 (463)
.+.|++ -||+|-|. +|-|+-||-|+++|.-+.+..
T Consensus 479 YiyGdmdEdgfyege-L~dgrrglvPsnFVe~v~d~~ 514 (1335)
T KOG3632|consen 479 YIYGDMDEDGFYEGE-LRDGRRGLVPSNFVEVVTDTK 514 (1335)
T ss_pred EEecCCCccccceee-eecccccCCCchheEEeccch
Confidence 999986 46999997 778999999999998776654
No 38
>KOG4773|consensus
Probab=83.89 E-value=0.2 Score=50.95 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=46.1
Q ss_pred eeEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 395 ~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
..+.|+.+++.+...||-|..||++.+...-..+|+-|+- -+.+|.||.++++.+
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~--R~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKV--RGLTGYYPDSFVKQL 230 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeee--ccccccccHHhhhhh
Confidence 4455777888888899999999999988888888888863 278999999999987
No 39
>KOG3565|consensus
Probab=79.96 E-value=0.63 Score=51.81 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=49.4
Q ss_pred EEEccCCCCCCCcccccCCCEEEe-cCceeceeeeeEeccCCeeeeeeccceeeCcc
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISV-AGNHWNGYSKGTNLRTNQLALYPTFKVVPRVE 453 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~-~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~~ 453 (463)
.|++++.+..++++.+.+|+++.+ .....+||.+|+-.+-+..|.+|+.+++.+..
T Consensus 582 ~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~~ 638 (640)
T KOG3565|consen 582 KALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTET 638 (640)
T ss_pred ecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccccc
Confidence 378999999999999999999998 56899999999977789999999999887643
No 40
>KOG3771|consensus
Probab=79.47 E-value=0.91 Score=48.04 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=41.1
Q ss_pred EEEccCCCCCCCcccccCCCEEEec-----CceeceeeeeEeccCCeeeeeecccee
Q psy7398 398 VAVLPHTPKDPSEMELVVGDKISVA-----GNHWNGYSKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 398 ~~i~~~~~~~~~El~l~~GD~i~~~-----~~~~~g~~~G~n~rt~~~gl~P~~kv~ 449 (463)
.++++|.+...+||+++.||.|.|. ...|.||+-|----.+ .|++|..+.+
T Consensus 404 ~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~-~~~~~~~~~~ 459 (460)
T KOG3771|consen 404 KALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDW-NGLFPLNFTR 459 (460)
T ss_pred eccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccc-ccceeccccC
Confidence 4889999999999999999999983 4567899988755444 6788877654
No 41
>KOG4575|consensus
Probab=79.30 E-value=2.1 Score=46.93 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=40.2
Q ss_pred ceeEEEEccCCCCCCCcccccCCCEEEecCceeceeeee-EeccCCeeeeeeccce
Q psy7398 394 SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKG-TNLRTNQLALYPTFKV 448 (463)
Q Consensus 394 ~~~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G-~n~rt~~~gl~P~~kv 448 (463)
+--++|.|.-+-..++.+-.-.||+|++.. .-+||+.| ..+.++..|+||+++|
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~tr-I~dgkwwi~lhrNk~~~g~fpsNFv 62 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTR-IEDGKWWILLHRNKDEDGLFPSNFV 62 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEe-eccceeeeeeeecccccccCcccce
Confidence 334567777776777888888999998854 44666444 5445999999999999
No 42
>KOG1843|consensus
Probab=79.19 E-value=1.1 Score=46.49 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=64.5
Q ss_pred HHHHHHhhcCCeEEEccCChhhHHH-HHHHhccCCCC---CCceEEcccccccCccccee-------------EEEEccC
Q psy7398 341 ITDIHFLSNCDFLVCTFSSQICRVA-YEYMNTMFPDA---SMQYKSLDDIYYFGGQISRI-------------HVAVLPH 403 (463)
Q Consensus 341 l~Dl~lLs~cD~~VgT~sSnv~rl~-~elr~t~~~d~---~~~~~slD~~y~~~g~~~~~-------------~~~i~~~ 403 (463)
+.|..+-.+----|-||-|+-+|.. ..+....++-. -..+.+++..|.-.|..... -.|+|+-
T Consensus 346 y~dfiivlrd~ea~~tf~s~~h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysf 425 (473)
T KOG1843|consen 346 YSDFIIVLRDYEAIQTFRSGTHRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSF 425 (473)
T ss_pred cccchhhcchhhhhhccccccccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehh
Confidence 3443333333333557777777665 33332222211 12456777777665554333 3477888
Q ss_pred CCCCCCcccccCCCEEEecC--ceeceeeeeEeccCCeeeeeeccceee
Q psy7398 404 TPKDPSEMELVVGDKISVAG--NHWNGYSKGTNLRTNQLALYPTFKVVP 450 (463)
Q Consensus 404 ~~~~~~El~l~~GD~i~~~~--~~~~g~~~G~n~rt~~~gl~P~~kv~~ 450 (463)
..+-.+.+.|+.||+|.+.. .-.+-||.|+ +-++.||||+++|+.
T Consensus 426 age~~GDl~f~kgDii~il~ks~s~~dwwtgr--~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 426 AGEQPGDLSFQKGDIITILKKSDSANDWWTGR--GNGYEGIFPANYVSL 472 (473)
T ss_pred ccCCCCCcccccCceEEEecCCcchhhHHHhh--ccccccccccceecc
Confidence 88889999999999998732 2233444442 334599999999975
No 43
>KOG3601|consensus
Probab=76.92 E-value=1.4 Score=42.02 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=40.9
Q ss_pred eEEEEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 396 ~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
.|.+.|+-.|..+.|+..+-||.|+|.....--|+.|. -.|+.|+||+..|.+.
T Consensus 165 yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs--~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 165 YQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGS--KLGRAGIFPAGYVAPS 218 (222)
T ss_pred hhhhcCCCCCCCchhhccccCCcceeecCCCcchhhcc--ccCceeeecCcccccc
Confidence 35578887788889999999999999655444444443 2355999999999775
No 44
>KOG1451|consensus
Probab=74.26 E-value=2.8 Score=45.67 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=46.9
Q ss_pred ceeEEEEccCCCCCCCcccccCCCEEE-ecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 394 SRIHVAVLPHTPKDPSEMELVVGDKIS-VAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 394 ~~~~~~i~~~~~~~~~El~l~~GD~i~-~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
++...++|++++...-|+...+|-++. |+...-+||.-|+- .|++||.|+++|+++
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence 444458899999999999999999886 46788899999974 488999999999874
No 45
>KOG4278|consensus
Probab=71.78 E-value=3.6 Score=45.56 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=50.0
Q ss_pred eEEEEccCCCCCCCcccccCCCEEEecCceece-eeeeEeccCCeeeeeeccceeeCccCCCCCCC
Q psy7398 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNG-YSKGTNLRTNQLALYPTFKVVPRVETADFPTY 460 (463)
Q Consensus 396 ~~~~i~~~~~~~~~El~l~~GD~i~~~~~~~~g-~~~G~n~rt~~~gl~P~~kv~~~~~~~~~p~~ 460 (463)
+-+|+|+..+...+-|+|..||++-|.|-..|| |...+. ..|+ |..|+++..|+-....+--|
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEart-KNGq-GWVPSNyItPvNSLeKhsWY 155 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEART-KNGQ-GWVPSNYITPVNSLEKHSWY 155 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecc-cCCC-ccccccccccccchhhcccc
Confidence 667999999999999999999999998855555 876664 3355 99999999998766655433
No 46
>KOG2996|consensus
Probab=71.51 E-value=3.2 Score=45.12 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=35.2
Q ss_pred cccccCCCEEEec-CceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 410 EMELVVGDKISVA-GNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 410 El~l~~GD~i~~~-~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
-+.+++||++... +.--.-|+-|+|.-|++.|.||+.-|+|-+
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~ 669 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCP 669 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCC
Confidence 5789999999873 444445788999999999999999999654
No 47
>KOG4792|consensus
Probab=67.91 E-value=4.9 Score=38.89 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=39.2
Q ss_pred EEccCCCC--CCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 399 AVLPHTPK--DPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 399 ~i~~~~~~--~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
|+.+--|+ +..-|-|++||+|.|.....||.+.|.- .|+.|.||--.|+-.
T Consensus 232 v~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl--nGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 232 VIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL--NGKIGHFPFTHVRFT 284 (293)
T ss_pred eehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee--cCccccccceeEEee
Confidence 55555454 3447899999999999999999998863 377999998777643
No 48
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=66.98 E-value=26 Score=34.93 Aligned_cols=106 Identities=17% Similarity=0.301 Sum_probs=57.4
Q ss_pred ceEEEEecCCCCCccccccChHHHHHHHHHHHHHHHhcCCCCcceEEEEcCChHHHHHHHHhCCCc--EEEeCCcccccc
Q psy7398 249 QLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEKYPQY--TVLGDPSIALTA 326 (463)
Q Consensus 249 ~VGvHIRrgDK~~~Ea~~~~l~eYm~~ve~~~~~~~~~~~~~~~~ifLATDd~~v~~e~k~~yp~~--~~~~~~~~~~~a 326 (463)
.||+=|=-+-|-. . =++.+++.||.+| ........||-||++..+.+.+ .=|+. .++.-.+
T Consensus 35 tIgl~vfatGkY~---~--f~~~F~~SAEk~F------m~g~~v~YyVFTD~~~~~p~v~-lg~~r~~~V~~v~~----- 97 (271)
T cd02515 35 TIGLTVFAVGKYT---E--FLERFLESAEKHF------MVGYRVIYYIFTDKPAAVPEVE-LGPGRRLTVLKIAE----- 97 (271)
T ss_pred EEEEEEEEeccHH---H--HHHHHHHHHHHhc------cCCCeeEEEEEeCCcccCcccc-cCCCceeEEEEecc-----
Confidence 6777665555531 1 2344444444433 1234679999999998766543 12222 2222211
Q ss_pred ccCCCCChhhHH--HHHHH---HHHhhcCCeEEEc-----cCChhh-HHHHHHHhccC
Q psy7398 327 SVGRRYSESSLM--GIITD---IHFLSNCDFLVCT-----FSSQIC-RVAYEYMNTMF 373 (463)
Q Consensus 327 ~~~~R~s~~sl~--~~l~D---l~lLs~cD~~VgT-----~sSnv~-rl~~elr~t~~ 373 (463)
..|..+.+|. .++.+ =.++.++||+.|- |.+.|| ....+|..++|
T Consensus 98 --~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~Lg~lva~lH 153 (271)
T cd02515 98 --ESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETLGDSVAQLH 153 (271)
T ss_pred --ccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHhhhhheecC
Confidence 1344455553 23333 3457899999986 667776 33344555554
No 49
>KOG4792|consensus
Probab=63.33 E-value=4.1 Score=39.42 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=44.1
Q ss_pred EEccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeCc
Q psy7398 399 AVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRV 452 (463)
Q Consensus 399 ~i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~~ 452 (463)
++++.+.+++..|.++.|+++.+..+-.+-|+..+|.- |+.||.|+.+|+...
T Consensus 129 ~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~-Gk~GmIPvpYVe~~~ 181 (293)
T KOG4792|consen 129 ALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSE-GKRGMIPVPYVEKYR 181 (293)
T ss_pred eeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccC-CcccceechHHHhhh
Confidence 67888888899999999999999877777777777654 789999999997543
No 50
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=62.11 E-value=42 Score=32.51 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=50.2
Q ss_pred CCCCcceEEEEcCChHHHHHHHHhCCCcEEEeCCccccccccC-CCCChhhHHHHHHHHHHh-hcCCeEEEccCChhhHH
Q psy7398 287 QTVDVKRVYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVG-RRYSESSLMGIITDIHFL-SNCDFLVCTFSSQICRV 364 (463)
Q Consensus 287 ~~~~~~~ifLATDd~~v~~e~k~~yp~~~~~~~~~~~~~a~~~-~R~s~~sl~~~l~Dl~lL-s~cD~~VgT~sSnv~rl 364 (463)
+..-...|+|+||++++++++++ |+--.|+..|+ .++ +| .+++..++--+..+ ...|.++|...++.=|-
T Consensus 40 ns~~fd~VviSsDs~~Il~~A~~-ygak~~~~Rp~-----~LA~D~--ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~ 111 (228)
T COG1083 40 NSKLFDKVVISSDSEEILEEAKK-YGAKVFLKRPK-----ELASDR--ASTIDAALHALESFNIDEDTLILLQPTSPLLT 111 (228)
T ss_pred cCCccceEEEcCCcHHHHHHHHH-hCccccccCCh-----hhccCc--hhHHHHHHHHHHHhccccCeeEEeccCccccc
Confidence 34567899999999999999996 54444332221 221 22 12233333333333 33677999999999888
Q ss_pred HHHHHhccC
Q psy7398 365 AYEYMNTMF 373 (463)
Q Consensus 365 ~~elr~t~~ 373 (463)
...++++.-
T Consensus 112 ~~~ik~A~e 120 (228)
T COG1083 112 SLHIKEAFE 120 (228)
T ss_pred hhHHHHHHH
Confidence 888877643
No 51
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.62 E-value=95 Score=28.52 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=50.4
Q ss_pred CcceEEEEcCChHHHHH----HHHhCCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCChhh-HH
Q psy7398 290 DVKRVYVATDDPQVLTE----IKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQIC-RV 364 (463)
Q Consensus 290 ~~~~ifLATDd~~v~~e----~k~~yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv~-rl 364 (463)
...+|||....+++.++ +++.||+..+.+..... . + ..-...+++..-.+..|+++..+++=-- ..
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~----~--~---~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 115 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGY----F--G---PEEEEEIIERINASGADILFVGLGAPKQELW 115 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCC----C--C---hhhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 36899999999999998 45689999988632111 0 1 1111236777778899999999988543 44
Q ss_pred HHHHHhcc
Q psy7398 365 AYEYMNTM 372 (463)
Q Consensus 365 ~~elr~t~ 372 (463)
+...++.+
T Consensus 116 ~~~~~~~l 123 (171)
T cd06533 116 IARHKDRL 123 (171)
T ss_pred HHHHHHHC
Confidence 55556555
No 52
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.56 E-value=82 Score=28.95 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred CcceEEEEcCChHHHHHH----HHhCCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCChh-hHH
Q psy7398 290 DVKRVYVATDDPQVLTEI----KEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQI-CRV 364 (463)
Q Consensus 290 ~~~~ifLATDd~~v~~e~----k~~yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv-~rl 364 (463)
...+|||...++++.+++ ++.||+..+.+..... . ..+-...+++..-.+..|+++..+++-- =+.
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~----f-----~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 117 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGY----F-----DEEEEEAIINRINASGPDIVFVGLGAPKQERW 117 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCC----C-----ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 357999999999999954 5789999888653211 1 1223345667777799999999988854 466
Q ss_pred HHHHHhccC
Q psy7398 365 AYEYMNTMF 373 (463)
Q Consensus 365 ~~elr~t~~ 373 (463)
+++.++.+.
T Consensus 118 ~~~~~~~l~ 126 (172)
T PF03808_consen 118 IARHRQRLP 126 (172)
T ss_pred HHHHHHHCC
Confidence 777776554
No 53
>KOG0515|consensus
Probab=52.02 E-value=10 Score=41.04 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=40.0
Q ss_pred eeEEEEccCCCCCCCcccccCCCEEEecC-------ceec---eeeeeEeccCCeeeeeeccceeeC
Q psy7398 395 RIHVAVLPHTPKDPSEMELVVGDKISVAG-------NHWN---GYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 395 ~~~~~i~~~~~~~~~El~l~~GD~i~~~~-------~~~~---g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
-.--|+++|.+...|||+++.||-+.|.. ++|= +=-.|+-.| +-.||||..|-+..
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPR-nylgLyPriKprqr 749 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPR-NYLGLYPRIKPRQR 749 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccch-hhhhcCccccchhh
Confidence 34448899999999999999999998842 2331 112455555 56899999886544
No 54
>KOG2391|consensus
Probab=49.97 E-value=56 Score=33.63 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7398 5 NYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQDLNTLQA 69 (463)
Q Consensus 5 ~~e~lrr~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~ 69 (463)
--|.+|+|.+..+...|-... .|++.+...+ +-...|+.++..++++..+|..+++-|.+
T Consensus 215 ~~eklR~r~eeeme~~~aeq~-slkRt~EeL~----~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQE-SLKRTEEELN----IGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH----hhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 458899998888777765433 4444444333 44556777777777888888887777653
No 55
>PHA01750 hypothetical protein
Probab=48.02 E-value=73 Score=24.91 Aligned_cols=44 Identities=36% Similarity=0.449 Sum_probs=24.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHH
Q psy7398 8 ITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKR 58 (463)
Q Consensus 8 ~lrr~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (463)
+.+..++|.++|+ +++||..|+.... +++...+++.++..+.++
T Consensus 27 KIKq~lkdAvkeI---V~~ELdNL~~ei~----~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 27 KIKQALKDAVKEI---VNSELDNLKTEIE----ELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHH
Confidence 3444555555554 5677777776654 555555555554444443
No 56
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=46.57 E-value=25 Score=34.31 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=24.9
Q ss_pred CcceEEEEcCChHHHHHHHHhCCCcEEEeCC
Q psy7398 290 DVKRVYVATDDPQVLTEIKEKYPQYTVLGDP 320 (463)
Q Consensus 290 ~~~~ifLATDd~~v~~e~k~~yp~~~~~~~~ 320 (463)
...+|+|||||++|.+..++ |+...+.+.+
T Consensus 42 ~~~rvvVATDde~I~~av~~-~G~~avmT~~ 71 (247)
T COG1212 42 GADRVVVATDDERIAEAVQA-FGGEAVMTSK 71 (247)
T ss_pred CCCeEEEEcCCHHHHHHHHH-hCCEEEecCC
Confidence 57899999999999999985 7777676654
No 57
>KOG3416|consensus
Probab=42.97 E-value=13 Score=32.77 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=19.6
Q ss_pred cccCCCEEEecCceeceeeeeEeccCCeee
Q psy7398 412 ELVVGDKISVAGNHWNGYSKGTNLRTNQLA 441 (463)
Q Consensus 412 ~l~~GD~i~~~~~~~~g~~~G~n~rt~~~g 441 (463)
.++|||+|...+.+-.=|=.|.-+++|+.|
T Consensus 61 ~~~PGDIirLt~Gy~Si~qg~LtL~~GK~G 90 (134)
T KOG3416|consen 61 LIQPGDIIRLTGGYASIFQGCLTLYVGKGG 90 (134)
T ss_pred ccCCccEEEecccchhhhcCceEEEecCCc
Confidence 589999998876544333335556666555
No 58
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=40.81 E-value=2.3e+02 Score=29.62 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhhhhHHHHHHHHHHHhhcCCC
Q psy7398 45 KLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPS 99 (463)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~I~~~QnP~ 99 (463)
.++.-+..+......+...+..|... +-.+|+..|...|-+++.++|+..+|+.
T Consensus 97 ~l~~~l~~~~~~l~~l~~~~~~l~~~-~~~dW~LaEaeyLlrlA~qrL~l~~Dv~ 150 (372)
T PF04375_consen 97 QLQQELAQLQQQLAELQQQLAALSQR-SRDDWLLAEAEYLLRLANQRLQLEGDVQ 150 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33333333344444455555555554 6789999999999999999999999764
No 59
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.56 E-value=2.5e+02 Score=26.09 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHhhhhccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhh
Q psy7398 5 NYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLL----ASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKE 80 (463)
Q Consensus 5 ~~e~lrr~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~ 80 (463)
+-+.|...+.+.+......+......+...... -.++ ....+.+...+..-.+.|..-+++|..+|....---.+
T Consensus 96 ~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~-vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~ 174 (204)
T PF04740_consen 96 DEDFLESELKKKLNQLKEQIEDLQDEINSILSS-VSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSE 174 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345666666677777666666555555333221 0122 11244555555556666777788888888544423356
Q ss_pred hhHHHHHHHHHHHhhcCCC
Q psy7398 81 SHDLSDLVQRRLEYLQNPS 99 (463)
Q Consensus 81 ~~~L~~~vq~~I~~~QnP~ 99 (463)
+..+-..++.-|..+++-.
T Consensus 175 ~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 175 IEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7788888888888887654
No 60
>KOG1318|consensus
Probab=34.66 E-value=1.7e+02 Score=31.18 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhhHHHH-HHHHHHHHHhhhhcccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhhhh
Q psy7398 5 NYEITRIRLSNNVQEF-WYYVNSELTKFKTEVVN-YSPLLASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESH 82 (463)
Q Consensus 5 ~~e~lrr~~~~~~~e~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~ 82 (463)
+.+.-||...|.|.-= ++-|+.-|++|.+...+ +.++.+...-.+|+..-+..+.|.-+.+...+.. =|.+.+.
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~----~rqk~le 303 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELE----NRQKKLE 303 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHH----hhhhHHH
Confidence 4444455555555333 56689899999888777 5666666667777788888888877777665542 1233444
Q ss_pred HHHHHHHHHHHhhcC
Q psy7398 83 DLSDLVQRRLEYLQN 97 (463)
Q Consensus 83 ~L~~~vq~~I~~~Qn 97 (463)
--++.+..+|.++++
T Consensus 304 ~~n~~L~~rieeLk~ 318 (411)
T KOG1318|consen 304 STNQELALRIEELKS 318 (411)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445555566665553
No 61
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.10 E-value=2.7e+02 Score=27.64 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=42.6
Q ss_pred CcceEEEEcCChHHHHHHH----HhCCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCC
Q psy7398 290 DVKRVYVATDDPQVLTEIK----EKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSS 359 (463)
Q Consensus 290 ~~~~ifLATDd~~v~~e~k----~~yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sS 359 (463)
...+||+....|+|.+++. ++||+-.|.+... +..+. .+. ..++.-.-.|+.|.+...+++
T Consensus 107 ~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~-----GYf~~--~e~--~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 107 EGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHD-----GYFDP--EEE--EAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred cCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecC-----CCCCh--hhH--HHHHHHHHhcCCCEEEEeCCC
Confidence 3689999999999999884 5899888876532 11111 112 355666677888888777776
No 62
>KOG4429|consensus
Probab=33.87 E-value=19 Score=36.14 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=39.7
Q ss_pred EccCCCCCCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeeccceeeC
Q psy7398 400 VLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPR 451 (463)
Q Consensus 400 i~~~~~~~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~~~ 451 (463)
.|+..++..+|+.+..||++.+......||..|.-+ +..|-||+-.|...
T Consensus 369 fYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~--gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 369 FYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLL--GDFEHFHAAEIEEA 418 (421)
T ss_pred hhccccccccccCCcccceeeecCcccCCCceeeec--cccCCCcHHHHHHh
Confidence 345566778999999999999999999999777643 67888888777654
No 63
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=33.71 E-value=45 Score=24.89 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=18.9
Q ss_pred cccCCCEEEecCceeceeeeeEecc
Q psy7398 412 ELVVGDKISVAGNHWNGYSKGTNLR 436 (463)
Q Consensus 412 ~l~~GD~i~~~~~~~~g~~~G~n~r 436 (463)
.+++||+|++.-...++|+.|+-.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~ 26 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTK 26 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEE
Confidence 5789999999655577888885443
No 64
>KOG0609|consensus
Probab=32.95 E-value=21 Score=38.82 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=36.6
Q ss_pred EEccCCCCC-------CCcccccCCCEEEe----cCceeceeeeeEeccCCeeeeeeccceee
Q psy7398 399 AVLPHTPKD-------PSEMELVVGDKISV----AGNHWNGYSKGTNLRTNQLALYPTFKVVP 450 (463)
Q Consensus 399 ~i~~~~~~~-------~~El~l~~GD~i~~----~~~~~~g~~~G~n~rt~~~gl~P~~kv~~ 450 (463)
|..+|.|.. +.-|..+.||++++ +.|+|-++--|-- --+..||+||.-..+
T Consensus 219 a~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~-~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 219 ALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDP-FGGLAGLIPSKELQE 280 (542)
T ss_pred hhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCc-cccccccccCHHHHH
Confidence 667777663 56789999999998 5678887765521 224489999986543
No 65
>KOG2264|consensus
Probab=32.82 E-value=2.1e+02 Score=31.70 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=48.4
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhhhhHHHHHHHHH
Q psy7398 12 RLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESHDLSDLVQRR 91 (463)
Q Consensus 12 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~ 91 (463)
|+..+..-+...++-||.++..+.. ++.+-|.++-...++.+++|....-.|..+. ..-+-++..++.
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krq----el~seI~~~n~kiEelk~~i~~~q~eL~~Lk--------~~ieqaq~~~~E 146 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQ----ELNSEIEEINTKIEELKRLIPQKQLELSALK--------GEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH--------hHHHHHHHHHHH
Confidence 3444555667778888888876654 5666666666666677777655554444443 223345667778
Q ss_pred HHhhcCCC
Q psy7398 92 LEYLQNPS 99 (463)
Q Consensus 92 I~~~QnP~ 99 (463)
+-..|||+
T Consensus 147 l~~~n~pk 154 (907)
T KOG2264|consen 147 LRETNNPK 154 (907)
T ss_pred HHhhcCCc
Confidence 88888885
No 66
>KOG2776|consensus
Probab=29.60 E-value=43 Score=34.73 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCCceEEcccccccCcccceeEEEEccCCCCCCC-cccccCCCEEEe-cCceeceee
Q psy7398 376 ASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPS-EMELVVGDKISV-AGNHWNGYS 430 (463)
Q Consensus 376 ~~~~~~slD~~y~~~g~~~~~~~~i~~~~~~~~~-El~l~~GD~i~~-~~~~~~g~~ 430 (463)
|.-..+|+|+- +.-+.|..++ +..|++||+|.+ .|-|-|||.
T Consensus 78 AfPT~Isvnnc-------------v~h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfi 121 (398)
T KOG2776|consen 78 AFPTSISVNNC-------------VCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFI 121 (398)
T ss_pred cccceecccce-------------eeccCcCCCCCcccccCCCEEEEEeeeeeccce
Confidence 44467777753 3344566555 889999999998 689999995
No 67
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=28.79 E-value=79 Score=26.22 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=30.2
Q ss_pred cccCcccceeEEEEccCCCC----CCCcccccCCCEEEecCceeceeeeeEeccCCeeeeeecccee
Q psy7398 387 YYFGGQISRIHVAVLPHTPK----DPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 387 y~~~g~~~~~~~~i~~~~~~----~~~El~l~~GD~i~~~~~~~~g~~~G~n~rt~~~gl~P~~kv~ 449 (463)
|-|.|++.-++.+...++.. ....|.+++|..++|......+=.-.+|.- |+.|..|.....
T Consensus 5 FKydgeI~VL~~~~V~~~~~~kk~G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~-GKYGYV~~~~L~ 70 (89)
T PF14603_consen 5 FKYDGEIRVLYTMMVDPNLKSKKWGGKDLPIKPGEILEVIQFTDDNKVLCRNSE-GKYGYVLRSHLL 70 (89)
T ss_dssp T---S----SS--B--TTS-SS---TTB----TT-B-EEEEESSSSEEEEEETT-TEEEEEEGGGS-
T ss_pred cccCceEEEEEEEEEccCcccccCCcccCCcCCCCEEEEEEeCCCCeEEEeCCC-CceeEEEHHHcc
Confidence 44678888887777666543 367999999999999766556655677766 778888876653
No 68
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=28.54 E-value=1.2e+02 Score=26.54 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=30.3
Q ss_pred eEEEEecCCccchHHHHHHHHHHHHHHhcCcEEEEecCC
Q psy7398 106 KLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKG 144 (463)
Q Consensus 106 ~Lv~~~~~~~GfG~~lh~l~~~L~~A~~t~RtLiid~~~ 144 (463)
+++..+....|-|.....+..+..+|....+++++|-..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 456667678899999999999999998888999999743
No 69
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=27.99 E-value=4.7e+02 Score=24.14 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhCCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCC-------hh
Q psy7398 289 VDVKRVYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSS-------QI 361 (463)
Q Consensus 289 ~~~~~ifLATDd~~v~~e~k~~yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sS-------nv 361 (463)
.....|+|||||.++.+.+++ |..-.+...++.. .. .+.+..++.+...- ..|++|...+. .+
T Consensus 38 ~~~d~IvVaTd~~~i~~~~~~-~g~~v~~~~~~~~---~~-----~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i 107 (217)
T PF02348_consen 38 KLIDEIVVATDDEEIDDIAEE-YGAKVIFRRGSLA---DD-----TDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSI 107 (217)
T ss_dssp TTTSEEEEEESSHHHHHHHHH-TTSEEEE--TTSS---SH-----HHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHH
T ss_pred CCCCeEEEeCCCHHHHHHHHH-cCCeeEEcChhhc---CC-----cccHHHHHHHhhhh-HHhhccccCCeeeECCHHHH
Confidence 345679999999999999985 7633333332211 11 12222333333333 34488877753 34
Q ss_pred hHHHHHHHhcc
Q psy7398 362 CRVAYEYMNTM 372 (463)
Q Consensus 362 ~rl~~elr~t~ 372 (463)
-+++..+++..
T Consensus 108 ~~~i~~~~~~~ 118 (217)
T PF02348_consen 108 DRAIEDIREAN 118 (217)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHhcCc
Confidence 55666665443
No 70
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.71 E-value=45 Score=28.02 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=31.5
Q ss_pred hhcCCChhHHhHhh-hhHHHHHHHHHHHhhc--CCCCCCCCceEEEEe
Q psy7398 67 LQASDSFEAWRLKE-SHDLSDLVQRRLEYLQ--NPSDCRTAKKLVCTL 111 (463)
Q Consensus 67 l~~~d~~~~w~~~~-~~~L~~~vq~~I~~~Q--nP~dC~~ak~Lv~~~ 111 (463)
+...|-|.+|..+- -..-...+++||..+| ||-||+..+.=|.++
T Consensus 6 ~~~~d~F~~W~~kLkD~~Aka~I~~Rl~rl~~GN~GD~kpvgeGV~EL 53 (100)
T COG3657 6 LKGTDTFSEWLKKLKDRRAKAKIAARLDRLALGNFGDVKPVGEGVSEL 53 (100)
T ss_pred ecchHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcCccccccchhhh
Confidence 44567889999863 2344567889999988 688988755445444
No 71
>KOG3849|consensus
Probab=26.92 E-value=40 Score=33.76 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=30.6
Q ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHhcCcEEEEec
Q psy7398 104 AKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKS 142 (463)
Q Consensus 104 ak~Lv~~~~~~~GfG~~lh~l~~~L~~A~~t~RtLiid~ 142 (463)
+.+|++=- --+-||+|..|.+..|..|...||||++-.
T Consensus 29 ~GYl~yCP-CMGRFGNQaDhFLGsLAFAKaLnRTL~lPp 66 (386)
T KOG3849|consen 29 AGYLLYCP-CMGRFGNQADHFLGSLAFAKALNRTLVLPP 66 (386)
T ss_pred CccEEEcc-ccccccchHHHHHHHHHHHHHhcccccCCc
Confidence 35665441 256799999999999999999999999853
No 72
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.84 E-value=2.9e+02 Score=21.55 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=21.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q psy7398 5 NYEITRIRLSNNVQEFWYYVNSELTKFKT 33 (463)
Q Consensus 5 ~~e~lrr~~~~~~~e~~~~~~~~~~~l~~ 33 (463)
+=+.+|++|.+.+.+++..+..-..+.+.
T Consensus 23 sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 23 SGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999888887766555433
No 73
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.57 E-value=45 Score=29.50 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=24.7
Q ss_pred EEecCCCCCccccccChHHHHHHHHHHHHHHHhcCCCCcceEEEEcCChHHHHHHH
Q psy7398 253 NLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIK 308 (463)
Q Consensus 253 HIRrgDK~~~Ea~~~~l~eYm~~ve~~~~~~~~~~~~~~~~ifLATDd~~v~~e~k 308 (463)
.+|||||- . +.-.+.+|+. ..+++.|+|-+++-++...
T Consensus 16 ~~RRGD~e-e--Eve~ireyi~---------------sA~r~vV~t~N~~K~~ain 53 (156)
T COG4019 16 NIRRGDKE-E--EVEKIREYIV---------------SAKRIVVATNNQKKFKAIN 53 (156)
T ss_pred cccccchH-H--HHHHHHHHHh---------------ccceEEEecCCHHHHHHHH
Confidence 37999994 2 2333444442 3578999999988766554
No 74
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=25.42 E-value=4.6e+02 Score=22.90 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhccccC---chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-------hHH
Q psy7398 7 EITRIRLSNNVQEFWYYVNSELTKFKTEVVNY---SPLLASKLEQVISETAEHKRSLVQDLNTLQASDSF-------EAW 76 (463)
Q Consensus 7 e~lrr~~~~~~~e~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~-------~~w 76 (463)
-.+-..|.+.+..+-..+ .+|.++++..... ...+...|+.+........+.+..+|+.|...... +.=
T Consensus 5 ~~~v~~I~~~i~~i~~~v-~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~ 83 (151)
T cd00179 5 FEEVEEIRGNIDKISEDV-EELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVD 83 (151)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH
Confidence 344455666666666555 3555555443321 24577777887777777777777777777654211 111
Q ss_pred hH--hhhhHHHHHHHHHHHhhc
Q psy7398 77 RL--KESHDLSDLVQRRLEYLQ 96 (463)
Q Consensus 77 ~~--~~~~~L~~~vq~~I~~~Q 96 (463)
|. .-...|++.++.-|..+|
T Consensus 84 r~~~~q~~~L~~~f~~~m~~fq 105 (151)
T cd00179 84 RIRKTQHSGLSKKFVEVMTEFN 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 22 123456666666665555
No 75
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=25.24 E-value=3.2e+02 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHhhcCCCC
Q psy7398 80 ESHDLSDLVQRRLEYLQNPSD 100 (463)
Q Consensus 80 ~~~~L~~~vq~~I~~~QnP~d 100 (463)
++.+--+-+|..+..+|-|.+
T Consensus 225 eLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 225 ELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 344444455666666776654
No 76
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.13 E-value=6.6e+02 Score=24.62 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhcccc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhhhhHHHHHHHHHHHhhcC
Q psy7398 23 YVNSELTKFKTEVVN-----YSPLLASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQN 97 (463)
Q Consensus 23 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~I~~~Qn 97 (463)
.+.+|+++|.....+ ...+....++..+.+..-|..-|+.-+..|.+.. .++ .....|..-|.-.|+..|.
T Consensus 140 ~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l~~---e~V~~ikedieyYve~n~d 215 (233)
T PF04065_consen 140 QLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-LDP---EQVEDIKEDIEYYVESNQD 215 (233)
T ss_pred HHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCH---HHHHHHHHHHHHHHHcCCC
Confidence 345566655543222 2455666677777777788888888787776653 333 4677899999999999999
Q ss_pred CC
Q psy7398 98 PS 99 (463)
Q Consensus 98 P~ 99 (463)
|-
T Consensus 216 ~D 217 (233)
T PF04065_consen 216 PD 217 (233)
T ss_pred Cc
Confidence 74
No 77
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=24.07 E-value=4.2e+02 Score=21.94 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhccccC---chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------hhH
Q psy7398 7 EITRIRLSNNVQEFWYYVNSELTKFKTEVVNY---SPLLASKLEQVISETAEHKRSLVQDLNTLQASDS--------FEA 75 (463)
Q Consensus 7 e~lrr~~~~~~~e~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~--------~~~ 75 (463)
..+-..|.++|..+-..+ .+|.++.+..... .+.+...++.+........+.+..+|..|.+... ...
T Consensus 7 ~~~v~~I~~~I~~i~~~v-~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r 85 (117)
T smart00503 7 FEKVEEIRANIQKISQNV-AELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDR 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhh
Confidence 344455666666666554 3555555544331 1345556666666666666666666666554311 111
Q ss_pred HhHhhhhHHHHHHHHHHHhhc
Q psy7398 76 WRLKESHDLSDLVQRRLEYLQ 96 (463)
Q Consensus 76 w~~~~~~~L~~~vq~~I~~~Q 96 (463)
-+..-...|++.++.-|..+|
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq 106 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQ 106 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 112234567777777776666
No 78
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.92 E-value=5.9e+02 Score=23.62 Aligned_cols=72 Identities=10% Similarity=0.137 Sum_probs=48.2
Q ss_pred cceEEEEcCChHHHHHH----HHhCCCcEEEeCCccccccccCCCCChhhHHHHHHHHHHhhcCCeEEEccCChhhHH-H
Q psy7398 291 VKRVYVATDDPQVLTEI----KEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQICRV-A 365 (463)
Q Consensus 291 ~~~ifLATDd~~v~~e~----k~~yp~~~~~~~~~~~~~a~~~~R~s~~sl~~~l~Dl~lLs~cD~~VgT~sSnv~rl-~ 365 (463)
..+|||-...|+|.+++ +++||+..+.+.... . + . .-...+++-.-.+..|+++..+++==-.+ +
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~-----f-~---~-~~~~~i~~~I~~s~~dil~VglG~PkQE~~~ 117 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGP-----L-E---P-EERKAALAKIARSGAGIVFVGLGCPKQEIWM 117 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCC-----C-C---h-HHHHHHHHHHHHcCCCEEEEEcCCcHhHHHH
Confidence 47999999999997766 467999988764111 1 1 1 12235677777799999999998854333 4
Q ss_pred HHHHhcc
Q psy7398 366 YEYMNTM 372 (463)
Q Consensus 366 ~elr~t~ 372 (463)
++.++..
T Consensus 118 ~~~~~~~ 124 (177)
T TIGR00696 118 RNHRHLK 124 (177)
T ss_pred HHhHHhC
Confidence 4454443
No 79
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.45 E-value=5.5e+02 Score=29.02 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHhHhhhhHHHHHHHHHHHhhcCCC
Q psy7398 54 AEHKRSLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPS 99 (463)
Q Consensus 54 ~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~I~~~QnP~ 99 (463)
.....+|..-+..|... -.+|...|...|-++++++|+..+|+.
T Consensus 398 ~~~~~~L~~~~~~l~~~--r~dW~laEae~Ll~lA~q~L~l~~dv~ 441 (656)
T PRK06975 398 QSAQQALEQQYQDLSRN--RDDWMIAEVEQMLSSASQQLQLTGNVQ 441 (656)
T ss_pred HHHHHHHHHHHHHHhcC--hhhhHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33344454445555543 389999999999999999999999874
No 80
>PF11642 Blo-t-5: Mite allergen Blo t 5; InterPro: IPR020306 This entry contains mite allergens Der p 5 [] and Blo t 5 [], belonging to the mite group 5 allergen family, as well Blo t 21 [] belonging to group 21. Mite allergens causes an allergic reaction in humans []. Common symptoms of mite allergy are bronchial asthma, allergic rhinitis and conjunctivitis. Der p 5 binds to IgE.; PDB: 3MQ1_E 2JMH_A 2JRK_A.
Probab=22.21 E-value=4.6e+02 Score=22.89 Aligned_cols=79 Identities=10% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhhhcccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHhHhhhhHHHHHHHHHHHhh
Q psy7398 17 VQEFWYYVNSELTKFKTEVVN-YSPLLASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYL 95 (463)
Q Consensus 17 ~~e~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~vq~~I~~~ 95 (463)
+..+...|++|+..|.++..+ ....+..-|.-....+.--...|...+.. .+++-++...-+.+.....++-++|..+
T Consensus 30 ~E~~Ll~Ls~Qi~~LEktksK~~k~~IlrEi~~~~~~i~ga~~~lerElkR-tDLnilEkfNfE~al~~~~iL~KDLk~~ 108 (118)
T PF11642_consen 30 GEQFLLHLSHQIAELEKTKSKEEKEQILREIDIIIAFIEGARGVLERELKR-TDLNILEKFNFEEALATGKILVKDLKEL 108 (118)
T ss_dssp HHHHHHHHHHHHHHHHCCS-CCHHHCHHHHHHHHHHHHHHHHHHHHHHCCC-SSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 344556689999999988775 22223223333333322222223333322 5666667777777788888888887766
Q ss_pred c
Q psy7398 96 Q 96 (463)
Q Consensus 96 Q 96 (463)
|
T Consensus 109 e 109 (118)
T PF11642_consen 109 E 109 (118)
T ss_dssp H
T ss_pred H
Confidence 5
No 81
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=22.04 E-value=44 Score=33.48 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=38.6
Q ss_pred hcCCeEEEccCChhh-HHHHHHHhccC-----CCCCC-ceEEcccccccCcccceeEEEEccCC
Q psy7398 348 SNCDFLVCTFSSQIC-RVAYEYMNTMF-----PDASM-QYKSLDDIYYFGGQISRIHVAVLPHT 404 (463)
Q Consensus 348 s~cD~~VgT~sSnv~-rl~~elr~t~~-----~d~~~-~~~slD~~y~~~g~~~~~~~~i~~~~ 404 (463)
++||.|||+++...= ....++-+.+- .|-.. ...|+|+.+.+..+-+...+||....
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~ 67 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQK 67 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecc
Confidence 689999999987663 22233322221 22211 23599999999999999999998663
No 82
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.71 E-value=4.4e+02 Score=21.41 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CChh-HHhHhhhhHHHHHHHHHHHhhc
Q psy7398 39 SPLLASKLEQVISETAEHKRSLVQDLNTLQAS--DSFE-AWRLKESHDLSDLVQRRLEYLQ 96 (463)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~--d~~~-~w~~~~~~~L~~~vq~~I~~~Q 96 (463)
.+++...|..+.....+....+-.++..|... +... .=+.-...+|++..+.-+..+|
T Consensus 28 s~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq 88 (102)
T PF14523_consen 28 SQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQ 88 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888776 1111 2122345677777777666665
No 83
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.17 E-value=1.1e+03 Score=25.72 Aligned_cols=126 Identities=11% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCChhHHhHhhhhHHHHH
Q psy7398 11 IRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISET---AEHKRSLVQDLNTLQASDSFEAWRLKESHDLSDL 87 (463)
Q Consensus 11 r~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~~ 87 (463)
..+.+.++++...|..++..+.....+........+...|... .+..+.|..++..- .... ....-+...
T Consensus 166 ~~l~~El~~lr~~l~~~~~~l~~~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~---~~~~----~~~~~l~~~ 238 (484)
T PRK06995 166 DTVMQELRSLRGMLEEQLASLAWGERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEG---DDAE----AALDWVQSA 238 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh---hchh----HHHHHHHHH
Confidence 4578888999999998888876332211122223332222211 33344444433222 1111 122334444
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEecC-CccchHHHHHHHHHHHHHHhcCcEEEEecC
Q psy7398 88 VQRRLEYLQNPSDCRTAKKLVCTLNK-GCGYGCQLHHVVYCFIVAYATQRTLILKSK 143 (463)
Q Consensus 88 vq~~I~~~QnP~dC~~ak~Lv~~~~~-~~GfG~~lh~l~~~L~~A~~t~RtLiid~~ 143 (463)
+.+.|..+-++...-....++.-++. |+|=-..+-.++..+....+..++.++...
T Consensus 239 l~~~l~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 239 LAKNLPVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred HHHHHhhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 55555443333222222344444433 777777888888776544444467666543
No 84
>PF13864 Enkurin: Calmodulin-binding
Probab=20.72 E-value=4.1e+02 Score=21.98 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7398 10 RIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQDLNTLQA 69 (463)
Q Consensus 10 rr~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~ 69 (463)
|..+.+.++.-|.-++.++.+|--.. |+ .....-+..++.....|..||..+.+
T Consensus 42 R~~lL~~Lk~~~~el~~ey~~lp~~~-----DT-~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 42 RQELLEGLKKNWDELNKEYQKLPFSI-----DT-LRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccc-----CC-HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55677777888888888887775443 22 12333344444555556667766654
No 85
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=20.55 E-value=1.5e+02 Score=21.23 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=26.7
Q ss_pred cccCCCEEEecCceece-eeeeEeccCCeeeeeecccee
Q psy7398 412 ELVVGDKISVAGNHWNG-YSKGTNLRTNQLALYPTFKVV 449 (463)
Q Consensus 412 ~l~~GD~i~~~~~~~~g-~~~G~n~rt~~~gl~P~~kv~ 449 (463)
.|..|+.|.+.+...++ |++..... ++.|.-++..++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~-g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYD-GKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEET-TEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcC-CcEEEEEccccC
Confidence 57899999998877776 98884443 447888877654
No 86
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=20.22 E-value=90 Score=30.99 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=24.7
Q ss_pred EEccCCCCCCCcccccCCCEEEe-cCceeceeeee
Q psy7398 399 AVLPHTPKDPSEMELVVGDKISV-AGNHWNGYSKG 432 (463)
Q Consensus 399 ~i~~~~~~~~~El~l~~GD~i~~-~~~~~~g~~~G 432 (463)
++.-+.|. ++..|+.||+|.+ .|-|-|||+.=
T Consensus 75 ~v~HgiP~--d~~vlk~GDiv~IDvg~~~dG~~~D 107 (255)
T COG0024 75 VVAHGIPG--DKKVLKEGDIVKIDVGAHIDGYIGD 107 (255)
T ss_pred eeeecCCC--CCcccCCCCEEEEEEEEEECCeeee
Confidence 34445555 8999999999998 47899999743
No 87
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=20.21 E-value=1.5e+02 Score=30.64 Aligned_cols=139 Identities=19% Similarity=0.354 Sum_probs=63.3
Q ss_pred CC-ceEEEEecCCCCCccccccChHHHHHHHHHHHHHHHhcCCCCcceEEEEcCChHHHHHHHHhCCCcEE--EeCCccc
Q psy7398 247 KD-QLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEKYPQYTV--LGDPSIA 323 (463)
Q Consensus 247 ~~-~VGvHIRrgDK~~~Ea~~~~l~eYm~~ve~~~~~~~~~~~~~~~~ifLATDd~~v~~e~k~~yp~~~~--~~~~~~~ 323 (463)
.. +||+=|=-+-|. . . =++.+++.||.+| ........||-||+|+.+..+. .=|+.++ +.-.+
T Consensus 97 ~n~tIGL~vfA~GkY-~--~--fl~~Fl~SAek~F------m~g~~V~YYVFTD~p~~vP~i~-l~~~r~~~V~~v~~-- 162 (337)
T PF03414_consen 97 QNITIGLTVFATGKY-I--V--FLKDFLESAEKHF------MVGHRVIYYVFTDQPSKVPRIE-LGPGRRLKVFEVQE-- 162 (337)
T ss_dssp CT-EEEEEEEE-CCH-H--H--HHHHHHHHHHHHB------STTSEEEEEEEES-GGGS-------TTEEEEEEE-SG--
T ss_pred cCceEEEEEEecccH-H--H--HHHHHHHhHHHhc------cCCcEEEEEEEeCchhhCCccc-cCCCceeEEEEecc--
Confidence 44 788877666553 1 1 2444455554433 2245788999999998766554 1233332 22211
Q ss_pred cccccCCCCChhhHH--HHHH---HHHHhhcCCeEEEc-----cCChhhHHHHHHHhccCCCCCCceEEcccccccCccc
Q psy7398 324 LTASVGRRYSESSLM--GIIT---DIHFLSNCDFLVCT-----FSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQI 393 (463)
Q Consensus 324 ~~a~~~~R~s~~sl~--~~l~---Dl~lLs~cD~~VgT-----~sSnv~rl~~elr~t~~~d~~~~~~slD~~y~~~g~~ 393 (463)
..|.-+.+|. .++. .-.++.++||++|- |...||- | ++ +..+.-|=-.||.
T Consensus 163 -----~~~Wqd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGv---E---~L----g~lva~LHp~~y~---- 223 (337)
T PF03414_consen 163 -----EKRWQDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGV---E---IL----GDLVATLHPWFYF---- 223 (337)
T ss_dssp -----GSSHHHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-G---G---G-----SSEEEEESTTTTT----
T ss_pred -----cCCCccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCH---H---HH----HHHHHHhCHHHHC----
Confidence 1233344443 2333 34578999999996 4455542 1 11 1234455444432
Q ss_pred ceeEEEEccCCCCCCCcccccCCCE
Q psy7398 394 SRIHVAVLPHTPKDPSEMELVVGDK 418 (463)
Q Consensus 394 ~~~~~~i~~~~~~~~~El~l~~GD~ 418 (463)
.....--|+-+|.+..=|....||.
T Consensus 224 ~~~~~FpYERrp~S~AyIp~~eGDf 248 (337)
T PF03414_consen 224 KPRESFPYERRPKSQAYIPYGEGDF 248 (337)
T ss_dssp STGGGS--B-STTSTTB--TT--S-
T ss_pred CChhhCccccCccccccccCCCCCe
Confidence 1222234677788888888888885
Done!