RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7398
(463 letters)
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 433 bits (1113), Expect = e-148
Identities = 223/470 (47%), Positives = 295/470 (62%), Gaps = 12/470 (2%)
Query: 2 PNNNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLV 61
++EI R R+ N +E W+++ SEL K K L ++ + + H+RS++
Sbjct: 46 LGKDHEILRRRIENGAKELWFFLQSELKKLKNLE---GNELQRHADEFLLDLGHHERSIM 102
Query: 62 QDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQL 121
DL L +D WR KE+ DL++LVQRR+ YLQNP DC AKKLVC +NKGCGYGCQL
Sbjct: 103 TDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQL 162
Query: 122 HHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGHDE-- 179
HHVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT G ST W G +
Sbjct: 163 HHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDK 222
Query: 180 -TQVIKLPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQTKTP 238
QV++LP++DS P + E L + +W + YL +PQ
Sbjct: 223 NVQVVELPIVDSLHPRPPYLPLAVPEDLA-DRLVRVHGDPAVWWVSQFVKYLIRPQPWLE 281
Query: 239 DFLSKYGEKDQLSENLYC-----WDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKR 293
+ + +K + DKVGTEAAFH ++EYM VEE+++ LA + VD KR
Sbjct: 282 KEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKR 341
Query: 294 VYVATDDPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFL 353
VY+ATDDP +L E K KYP Y + D SI+ +A + RY+E+SL G+I DIHFLS DFL
Sbjct: 342 VYLATDDPSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFL 401
Query: 354 VCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMEL 413
VCTFSSQ+CRVAYE M T+ PDAS + SLDDIYYFGGQ + +A+ H P+ E+ +
Sbjct: 402 VCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPM 461
Query: 414 VVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADFPTYPQV 463
GD I VAGNHW+GYSKG N + + LYP++KV ++ET +PTYP+
Sbjct: 462 EPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA 511
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
3six_A*
Length = 330
Score = 153 bits (387), Expect = 6e-43
Identities = 48/331 (14%), Positives = 94/331 (28%), Gaps = 39/331 (11%)
Query: 102 RTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWE----EVFE 157
+ ++ + G+G L + + A T RTL++ +G Y + FE
Sbjct: 2 TKERFVIS--RRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFE 59
Query: 158 PVSKTCTSP----EGASTSSWPGHDETQVIKLPVIDSNQSARPLISSLHSERLGTPTIPT 213
PV P + + S+PG + P ID RP T
Sbjct: 60 PVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCIN--RPDEQIFRERDELTELFQA 117
Query: 214 SRRSNRLWDWTDPPSY-------------LFKPQTKTPDFLSKYGEKDQLSENLYCW--- 257
S D K +++ + E+ ++
Sbjct: 118 REDSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVR 177
Query: 258 -----DKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRVYVATDDPQVLTEIKEKYP 312
D + + + + V ++ +V++ TD QVL ++ +P
Sbjct: 178 HGNGEDIMEHAPYWADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFP 237
Query: 313 QYTVLGDPSIALTASVGRRYSES--SLMGIITDIHFLSNCDFLV-CTFSSQICRVAYEYM 369
+ A A + D++ L+ C ++ +S R A +
Sbjct: 238 DVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPTSAFTRYARLLV 297
Query: 370 NTMFP---DASMQYKSLDDIYYFGGQISRIH 397
+ +D+ Y H
Sbjct: 298 PRIIEFDLSNPGHLTMIDNPYEHFAASHHHH 328
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 50.4 bits (121), Expect = 1e-08
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVV 449
G + + H A+ P+ E+EL V D + V + + + N+RT ++P + +
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
Query: 450 PRVETAD 456
+ +
Sbjct: 62 EVTKEPE 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 3e-08
Identities = 69/478 (14%), Positives = 139/478 (29%), Gaps = 151/478 (31%)
Query: 4 NNYEITRIRLSNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQD 63
+Y++ ++ + FW + + + V+ L +++ + ++H ++
Sbjct: 172 LSYKVQC-KMDFKI--FWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 64 LNTLQASDS--FEAWRLKESHDLSDLVQRRLEYLQNPSD-------CRTAKKLVCTLNKG 114
++++QA ++ + L LV L +QN C+ L+ T K
Sbjct: 227 IHSIQAELRRLLKSKPYENC--L--LV---LLNVQNAKAWNAFNLSCKI---LLTTRFKQ 276
Query: 115 CGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGAST-SS 173
V F+ A T + S T T E S
Sbjct: 277 ----------VTDFLSAATTT-----------------HISLDHHSMTLTPDEVKSLLLK 309
Query: 174 WPGHDETQVIKLP--VIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWD-WTDPPSYL 230
+ LP V+ +N P S+ +E + R WD W
Sbjct: 310 YLDCRPQ---DLPREVLTTN----PRRLSIIAESI--------RDGLATWDNW------- 347
Query: 231 FKPQTKTPDFLSKYGEKDQLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLA-LKQTV 289
K+ D+L+ + E++ + ++ A + + +L+ +
Sbjct: 348 ------------KHVNCDKLTTII--------ESSLNVLEP--AEYRKMFDRLSVFPPSA 385
Query: 290 DVKRVYVATDDPQVL----TEIKEKYPQYTV--LGDPSIALTASVGRRYSESSLMGIITD 343
+ +L ++ + V L S+ S I
Sbjct: 386 HIP--------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-------IPS 430
Query: 344 IHFLSNCDF---------LVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQIS 394
I+ +V ++ ++ + + P QY Y G
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKT---FDS-DDLIPPYLDQY-----FYSHIGH-- 479
Query: 395 RIHVAVLPHTPKDPSEMELVVGD------KISVAGNHWNGYSKGTNLRTNQLALYPTF 446
H+ + H + + +V D KI WN N QL Y +
Sbjct: 480 --HLKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPY 533
Score = 45.6 bits (107), Expect = 3e-05
Identities = 60/375 (16%), Positives = 112/375 (29%), Gaps = 116/375 (30%)
Query: 23 YVNSELTKFKTEVVNYSPLLASKLEQVISETAEHKRSLVQDLNTLQASDSFEAWRLKESH 82
Y++ EV+ +P S +I+E S+ L T ++ W+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLS----IIAE------SIRDGLAT------WDNWKHVNCD 353
Query: 83 DLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIV---AYATQRTL- 138
L+ +++ L L P++ R + A+ L
Sbjct: 354 KLTTIIESSLNVL-EPAEYR-------------------KMFDRLSVFPPSAHIPTILLS 393
Query: 139 ILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGHDETQVIKLPVID-SNQSARPL 197
++ W +V V+K S + I +P I +
Sbjct: 394 LI----WFDVIK--SDVMVVVNKLHKY------SLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 198 ISSLHSERLGTPTIPTSRRSNRLWDWTDPPSYLFKPQTKTPDFLSKYGEKDQLSENLYCW 257
+LH +I + +D D P +L +Y Y
Sbjct: 442 EYALHR------SIVDHYNIPKTFDSDDLI----------PPYLDQY---------FYSH 476
Query: 258 DKVGTEAAFHHV-----DEYMAGVEEYYKQLA-LKQTVDVKRVYVATDDPQ----VLTEI 307
+G HH+ E M + L+Q ++ A + L ++
Sbjct: 477 --IG-----HHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQL 527
Query: 308 KEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITDI-HFLSNCD-FLVCTFSSQICRVA 365
K Y Y DP +Y ++ I FL + L+C+ + + R+A
Sbjct: 528 K-FYKPYICDNDP----------KYER-----LVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 366 YEYMN-TMFPDASMQ 379
+ +F +A Q
Sbjct: 572 LMAEDEAIFEEAHKQ 586
Score = 44.5 bits (104), Expect = 7e-05
Identities = 49/329 (14%), Positives = 100/329 (30%), Gaps = 99/329 (30%)
Query: 197 LISSLHSERLGTPTIPTSR---RSNRLWDWTDPPSYLFKPQTKTPDFLSKYGEKDQLSEN 253
L+S + +E+ P++ T + +RL + D + +S+ +L +
Sbjct: 94 LMSPIKTEQRQ-PSMMTRMYIEQRDRL--YNDNQVF-------AKYNVSRLQPYLKLRQA 143
Query: 254 LYCWDKVGTEAAFHHVDEYMAGVEEYYKQ-LALK--QTVDVKR-----VYVAT----DDP 301
L + + G K +AL + V+ ++ + P
Sbjct: 144 LLE-LRPAKNVLIDG----VLGSG---KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 302 QVLTEIKEKY-----PQYTVLGDPSIALTASVG------------RRYSESSLMGIITDI 344
+ + E+ +K P +T D S + + + Y L ++ ++
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNV 253
Query: 345 -------HFLSNCDFLVCTFSSQI---------CRVAYEYMNTMF-PDASMQY--KSLDD 385
F +C L+ T Q+ ++ ++ + PD K LD
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312
Query: 386 IYYFGGQISRIHVAVLPHTPKDPSEMEL-VVGDKISVAGNHWNGYSKGTN--LRT----- 437
LP + L ++ + I W+ + L T
Sbjct: 313 ----------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 438 -NQL------ALYPTFKVVPRVETADFPT 459
N L ++ V P +A PT
Sbjct: 363 LNVLEPAEYRKMFDRLSVFP--PSAHIPT 389
Score = 32.1 bits (72), Expect = 0.44
Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 51/192 (26%)
Query: 267 HHVDEYMAGVEEYYKQL------ALKQTVDVKRVYVATDDP-QVLT--EIKEKYPQYTVL 317
HH+D + YK + A D K V D P +L+ EI ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKEEIDH------II 55
Query: 318 GDPSIALTASVGRRYSESSLMGIITDIHFLSNCDFLVCTFSSQICRVAYEYMNTMFPDAS 377
+V L LS + +V F ++ R+ Y+++ +
Sbjct: 56 MSKD-----AVSGTL---RLFWT-----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 378 MQYKSLDDIYYFGGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRT 437
Q S+ Y Q R++ + S ++ LR
Sbjct: 103 RQ-PSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPY------------------LKLRQ 142
Query: 438 NQLALYPTFKVV 449
L L P V+
Sbjct: 143 ALLELRPAKNVL 154
Score = 31.4 bits (70), Expect = 0.80
Identities = 49/341 (14%), Positives = 89/341 (26%), Gaps = 123/341 (36%)
Query: 7 EITRIRL---------SNNVQEFWYYVNSELTKFKTEVVNYSPLLASKLEQVISETAEHK 57
++ VQ+F V L NY L S ++ + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF---VEEVLRI------NY-KFLMSPIKTEQRQPSMMT 109
Query: 58 RSLVQDLNTL----QASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLN- 112
R ++ + L Q + RL+ L ++ L L R AK ++ ++
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLEL------RPAKNVL--IDG 157
Query: 113 -KGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWR-YARGGWEEVFEPVSKTCTSPEGAS 170
G G + + ++ + W + K C SPE
Sbjct: 158 VLGSGKTW---------VALDVCLSYKVQCKMDFKIF----WLNL-----KNCNSPE--- 196
Query: 171 TSSWPGHDETQVIK-----LPVIDSNQSARPLISSLHSERLGTPTIPTSRRSNRLWDWTD 225
V++ L ID N ++R HS + RL
Sbjct: 197 ----------TVLEMLQKLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKP 242
Query: 226 PPSYLFKPQTKTPDFLSKYGEKDQLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLAL 285
+ L L + + AF
Sbjct: 243 YENCL--------LVL------LNV------QNA-KAWNAF------------------- 262
Query: 286 KQTVDVK-RVYVATDDPQVLTEIKEKYPQYTVLGDPSIALT 325
++ ++ + T QV + + L S+ LT
Sbjct: 263 ----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 41.8 bits (99), Expect = 1e-05
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 394 SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
+ H A+ P+ E+EL V D + V + + + N+RT ++P
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFP 53
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 38.2 bits (89), Expect = 6e-04
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 394 SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYS----KGTNLRTNQLALYPTFKVV 449
+ P+TP++ E+ELV GD I ++ S GT+L T L P +
Sbjct: 16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT 75
Query: 450 PRVET 454
E
Sbjct: 76 KADEC 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 45/261 (17%), Positives = 79/261 (30%), Gaps = 95/261 (36%)
Query: 193 SARPLISSLHSERLGTPTIPTSR--RSNRLWD----WTDPPSYLF----KPQTKTP---- 238
S RPL S S +PT+ +++L + P+ F +P T
Sbjct: 5 STRPLTLSHGSLEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 239 --DFLSKYGEKDQLSENLYCWDKVGTEAAFHHVDEYMAG--------------------- 275
++S E ++ + + TE F + Y+ G
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE--FEN--CYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 276 ---VEEYYKQL-------------ALKQTVDVK--RVYV------ATDDPQVLTEIKEKY 311
++ Y AL + V ++ TDD E+++ Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEELRDLY 177
Query: 312 PQYTVLGDPSIALTASVGRRYSESSL-------MGIITDIH-FLSN------CDFLV-CT 356
Y VL I +A ++L G+ +I +L N D+L+
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLLSIP 235
Query: 357 FS------SQICRVAYEYMNT 371
S Q+ Y+ T
Sbjct: 236 ISCPLIGVIQLAH----YVVT 252
Score = 29.6 bits (66), Expect = 3.2
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 19/84 (22%)
Query: 10 RIRLSNNVQEFWYYVN--SELTKFKTEVVNY-SP---------LLA-SKLEQVISETAEH 56
R+ S + + Y V + T + E+VNY L A + V++
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 57 KRSLVQDLNTLQASDSFEAWRLKE 80
K +++ LQ S S E ++
Sbjct: 1876 KIDIIE----LQKSLSLE--EVEG 1893
Score = 28.9 bits (64), Expect = 4.5
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 39 SPLLASKLEQVISETAEHKRSL-VQDL-----NTLQASDSFEAWRLKESHDLSDLVQ 89
S LL + + + ++ S +D+ +T SD R+ +V
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVD 481
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 35.1 bits (81), Expect = 0.003
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 390 GGQISRIHVAVLPHTP-KDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
G + R A+LP+T D E+ + GD V +G+ TNLRT++ L
Sbjct: 1 GSHMRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIV 56
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 33.8 bits (78), Expect = 0.012
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
+ A+ + P++ E+EL GD++ V +G+ G + RT + +P
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFP 57
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 31.5 bits (72), Expect = 0.071
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 398 VAVLPHT-PKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
A+LP+T D E+ + GD V +G+ TNLRT++ L
Sbjct: 11 RAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIV 58
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 31.1 bits (71), Expect = 0.099
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 393 ISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
+++ VA+ P++ +E+ L GD + ++ H G+ N ++ L P
Sbjct: 4 VNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVP 55
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 30.8 bits (69), Expect = 0.15
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 399 AVLPHTPKDPSEMELVVGDKISVAGNHW---------------NGYSKGTNLRTNQLALY 443
A+ + + +++L +GD ++V G+ G N T + +
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 444 P 444
P
Sbjct: 70 P 70
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 29.9 bits (68), Expect = 0.23
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
+ VA+ ++ P E++L G+ I V G + +G+ KG +L T + ++P
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFP 57
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 29.4 bits (67), Expect = 0.26
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
VA+ P++ +E+ L GD + ++ H G+ N ++ L P
Sbjct: 5 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVP 51
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 30.3 bits (68), Expect = 0.26
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 399 AVLPHTPKDPSEMELVVGDKISVAGNHW---------------NGYSKGTNLRTNQLALY 443
A+ P + P ++EL+ GD + V+ G+ G N RT Q +
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75
Query: 444 P 444
P
Sbjct: 76 P 76
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 31.5 bits (72), Expect = 0.54
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 22/135 (16%)
Query: 39 SPLLASKLEQVISETAEHKRSLVQDLNTLQA--SDSFEAWRLKESHDLSDLVQRRLEYLQ 96
SP S L+ V E++ V+ L A S S + E + ++ ++ L
Sbjct: 1 SPNSMSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRL- 59
Query: 97 NPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYA-------- 148
+ G L ++ + + ++T+ + Y
Sbjct: 60 ---GGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCI------YGHLDVQPAA 110
Query: 149 -RGGWE-EVFEPVSK 161
GW+ E F V +
Sbjct: 111 LEDGWDSEPFTLVER 125
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 29.2 bits (66), Expect = 0.55
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 392 QISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
QIS + A+ + + ++ G+K + + + + +L T + P
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIP 55
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 28.9 bits (65), Expect = 0.69
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
K E+ L D + V +G+ G LR + +P
Sbjct: 21 EITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFP 66
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 30.9 bits (69), Expect = 0.95
Identities = 40/282 (14%), Positives = 76/282 (26%), Gaps = 36/282 (12%)
Query: 88 VQRRLEYLQNPSDC--RTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGW 145
++R + P + + C +G +G + F+
Sbjct: 91 PEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQ 150
Query: 146 RYARGGWEEVFEPVSKTCTSPEGASTSSWPGHDETQVIKLPVIDSNQSARPLISSLHSER 205
+R W E F + A + K + S
Sbjct: 151 MGSRKKWLEKFPSEEYPVLAFSSAPAPFPSKGKVWSIQKYLR--WSSRITEQAKKFISAN 208
Query: 206 LGTPTIPTSRRSNRLWDWTDPPSYLFKPQTKTPDFLSKYGEKDQLSENLYCWDKVGTEAA 265
L P + R DW ++ L + C +
Sbjct: 209 LAKPFVAVHLR--NDADWVRVCEHI------------DTTTNRPLFASEQCLGEGHHLGT 254
Query: 266 FHHVDEYMAGVEEYYKQL-ALKQTVDVKRVYVATDDPQVLTEIKEKYPQYTVLGDPSIAL 324
+ ++ +Q+ ++ K V+VA+D ++ EI E Y +
Sbjct: 255 LTK-EICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYEI-------- 305
Query: 325 TASVGRRYSESSL--MGIITDI-HFLSNCDFLVCTFSSQICR 363
R+ + + I+ F+ NC V TFS + R
Sbjct: 306 --EAHRQEPDDMYTSLAIMGRADLFVGNC---VSTFSHIVKR 342
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.4
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 21/46 (45%)
Query: 286 KQTVDVKRVYVATDDPQVLTEIKEKY-PQYTVLGD--PSIALTASV 328
KQ + K++ +K Y D P++A+ A++
Sbjct: 19 KQAL--KKLQ---------ASLK-LYAD------DSAPALAIKATM 46
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine
synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus
KT}
Length = 432
Score = 30.3 bits (68), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 302 QVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIIT 342
+L +I+ KY +Y V +P + + A G Y MGI+T
Sbjct: 260 SLLAKIRRKYAEYGVKQEPFVIVKADAG-TYG----MGIMT 295
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli} SCOP:
c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A*
1h7h_A* 1h7t_A*
Length = 245
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 286 KQTVDVKRVYVATDDPQVLTEIKE 309
Q V V+VATDDP+V ++
Sbjct: 38 LQVAGVAEVWVATDDPRVEQAVQA 61
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 26.8 bits (60), Expect = 2.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 407 DPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT 445
PSE+ L GD I + +G+S G L ++ PT
Sbjct: 14 SPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPT 52
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 29.4 bits (66), Expect = 2.5
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 20/73 (27%)
Query: 340 IITDIHFLSNCD--FLV----CTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGG-- 391
II ++ L C+ ++V +S + E+M+ SLD + G
Sbjct: 78 IIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG---------GSLDQVLKKAGRI 128
Query: 392 ---QISRIHVAVL 401
+ ++ +AV+
Sbjct: 129 PEQILGKVSIAVI 141
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 1.90A {Acinetobacter baumannii}
PDB: 3pol_A
Length = 253
Score = 28.6 bits (65), Expect = 3.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 286 KQTVDVKRVYVATDDPQVLTEIKE 309
K+ + VATDD ++ +
Sbjct: 37 KKVEGFDDLCVATDDERIAEICRA 60
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 26.9 bits (60), Expect = 3.8
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
GG + VA+ + ++ G+K + + + + +L T + P
Sbjct: 11 GGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIP 65
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13
PDB: 1vh3_A 3duv_A*
Length = 262
Score = 28.6 bits (65), Expect = 4.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 280 YKQLALKQTVDVKRVYVATDDPQVLTEIKE 309
+++ AL+ RV +ATD+ V K
Sbjct: 34 FEK-ALQSGAS--RVIIATDNENVADVAKS 60
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 28.6 bits (65), Expect = 4.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 289 VDVKRVYVATDDPQVLTEIKE 309
RV +ATDD +V ++
Sbjct: 40 AGADRVIIATDDERVEQAVQA 60
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 28.3 bits (64), Expect = 4.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 290 DVKRVYVATDDPQVLTEIKE 309
+R+ VATD V ++
Sbjct: 57 GAERIIVATDHEDVARAVEA 76
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope;
1.80A {Coxiella burnetii}
Length = 256
Score = 28.3 bits (64), Expect = 4.6
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 280 YKQLALKQTVDVKRVYVATDDPQVLTEIKE 309
Y+ A+K + V +ATDD ++ ++
Sbjct: 41 YES-AIKSGAE--EVVIATDDKRIRQVAED 67
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 27.4 bits (61), Expect = 4.6
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
I VA+ + + ++ G++ + N + + ++ T + P
Sbjct: 28 TIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIP 77
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, lyase; 1.40A
{Burkholderia thailandensis}
Length = 487
Score = 28.1 bits (63), Expect = 6.4
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 249 QLSENL--YCWDKVGTEAAFHHVDEYMAGVEE---YYKQLALKQTVDVKRVYVA--TDDP 301
+ N + +D +G + A V + VE+ + + + +V+ +
Sbjct: 333 SKASNFERFVFDLLGRDPA--RVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGRSTHA 390
Query: 302 QVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGII 341
+ I++ + +Y + D A V R + + ++
Sbjct: 391 DRIATIRDVFERYRTMIDTHTADGLKVAREHLRPGVPMVV 430
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 28.1 bits (62), Expect = 7.0
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 285 LKQTVDVKRVYVATD-DPQVLTEIKEKYPQYTVLGDPSIALTASVGRRYSESSLMGIITD 343
L +T + +V+VATD + E+K+ P+ L Y + + I
Sbjct: 298 LMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE-----LYKDGGVAIIDQW 352
Query: 344 I-----HFLSNCDFLVCTFSSQICR 363
I F+ V TFS +I
Sbjct: 353 ICAHARFFIGTS---VSTFSFRIHE 374
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 27.0 bits (59), Expect = 9.2
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVPRVETADF 457
+A+ + P ++ G+++ + + K +L T Q P V
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKANSLEPE 74
Query: 458 PTY 460
P +
Sbjct: 75 PWF 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.405
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,077,952
Number of extensions: 412083
Number of successful extensions: 878
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 48
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)