RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7398
(463 letters)
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 32.4 bits (74), Expect = 0.011
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
+I A+ + D E+ GD I G+ GT RT + + P
Sbjct: 4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLP 53
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 32.0 bits (73), Expect = 0.012
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPTFKVVP 450
+ VA+ + ++ G+K + + + + +L T + P+ V P
Sbjct: 2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 32.1 bits (73), Expect = 0.013
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT 445
VA+ + + +++ G+++ + N + +L T Q P+
Sbjct: 3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPS 53
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 30.1 bits (68), Expect = 0.058
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT 445
A + + +E+ V DKI + + G + L+P+
Sbjct: 4 TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPS 51
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 28.3 bits (63), Expect = 0.31
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT 445
+A+ + P ++ G+++ + + K +L T Q P
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRIL-EQSGEWWKAQSLTTGQEGFIPF 56
>d1opoa_ b.121.4.7 (A:) Carmovirus coat protein {CarMV (Carnation
mottle virus) [TaxId: 11986]}
Length = 267
Score = 30.7 bits (69), Expect = 0.32
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 286 KQTVDVKRVYVATD----DPQVLTEIKEKY------PQYTVLGDPSIALTASVGRRYSES 335
+ VD R+ ++T V+ E+ +Y P T + S G Y
Sbjct: 125 AKLVDFGRIVLSTYGFDKADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVP 184
Query: 336 SLMGIITDIHFLSNCDFLVCTFSS 359
S+ G + ++ + + +
Sbjct: 185 SVNGNELQLRVVAAGKWCIIVRGT 208
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 28.2 bits (63), Expect = 0.38
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 395 RIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYPT--FKVVPRV 452
I VA+ + ++ GD++ V + K +L T + P+ V +
Sbjct: 5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSL 63
Query: 453 ET 454
ET
Sbjct: 64 ET 65
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 28.4 bits (62), Expect = 0.81
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 122 HHVVYCFIVAYATQRTLILKSKGWRYAR---GGWEE 154
+V C A L L + + G W E
Sbjct: 84 PIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 119
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 28.7 bits (63), Expect = 1.2
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 226 PPSYLFKPQTKTPDFLSKYGEKDQLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQL-A 284
+ QT+ L++ + L + D+ + + E + + + +++
Sbjct: 141 EAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAG 200
Query: 285 LKQTVDVKRVYV 296
DVK + V
Sbjct: 201 YNSKTDVKYMPV 212
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 26.3 bits (58), Expect = 1.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 396 IHVAVLPHTPKDPSEMELVVGDKISVAGNHWNG 428
+ VA+ + + + G+K+ V G + NG
Sbjct: 2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNG 34
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 26.7 bits (59), Expect = 1.3
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 390 GGQISRIHVAVLPHTPKDPSEMELVVGDKISVAGNH---WNGYSKG 432
G ++A+ P++ +P ++ G++I V W G
Sbjct: 4 GSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGD 49
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse
(Mus musculus), mitochondrial [TaxId: 10090]}
Length = 130
Score = 27.6 bits (61), Expect = 1.8
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 339 GIITDIHFLSNCDFLVCTFSSQICRVAYEYMNTMFPDASMQYKSLDDIYYFGGQISRIHV 398
G I D F + SS E++ + ++ K+ D ++H
Sbjct: 47 GKIVDARFKTFGCGSAIASSSLAT----EWVKGKTVEEALTIKNTDIAKELCLPPVKLHC 102
Query: 399 AVLP 402
++L
Sbjct: 103 SMLA 106
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 25.4 bits (56), Expect = 2.4
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTN 434
+A+ + K P E+ + GD +++ + + K
Sbjct: 4 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 40
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 25.1 bits (55), Expect = 4.9
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 394 SRIHVAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLR 436
S I VA+ + ++ L G + + + + + +
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKY 44
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 24.8 bits (54), Expect = 5.4
Identities = 4/47 (8%), Positives = 14/47 (29%)
Query: 398 VAVLPHTPKDPSEMELVVGDKISVAGNHWNGYSKGTNLRTNQLALYP 444
+A ++ GD +++ + + + + P
Sbjct: 10 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIP 56
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 26.2 bits (57), Expect = 7.9
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 244 YGEKDQLSENLYCWDKVGTEAAFHHVDEYMAGVEEYYKQLALKQTVDVKRV 294
G + + V ++ F + +E +K K KR+
Sbjct: 25 AGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRI 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.405
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,758,482
Number of extensions: 81199
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 19
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)