BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7399
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 1 MLKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
M+ +DE+VG V + N++ +F +DNGG T+ +NWPLRG K+S
Sbjct: 228 MVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-------GNNWPLRGRKWSL 280
Query: 61 HEGGVRNVAALWSPLLR-KGQVLENLMHITDWLPTLYFIAGKEKN 104
EGGVR V + SPLL+ KG L+HI+DWLPTL +A N
Sbjct: 281 WEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTN 325
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 5 LDESVGRVIQSXXXXXXXXNSLVVFISDNGGPT-----VDSLHFHGNTASNWPLRGTKYS 59
LD VG+V+ N++V+F SDNG T V L+ G T LRG K +
Sbjct: 277 LDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDG---LRGRKDN 333
Query: 60 FHEGGVRNVAAL-WSPLLRKGQVLENLMHITDWLPTL 95
EGG+R A + + L +G V + ++ DW+PTL
Sbjct: 334 LWEGGIRVPAIIKYGKHLPQGMVSDTPVYGLDWMPTL 370
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
++ +D+S+G++++ N+ V F SDNG + + G SN P K +
Sbjct: 232 VREIDDSIGKILELLQDLHVADNTFVFFTSDNGAALISAPEQGG---SNGPFLCGKQTTF 288
Query: 62 EGGVRNVAALWSP-LLRKGQVLENLMHITDWLPTLYFIAG 100
EGG+R A W P + GQV L I D T +AG
Sbjct: 289 EGGMREPALAWWPGHVTAGQVSHQLGSIMDLFTTSLALAG 328
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
L LD +VG ++ + +LV+F +DNG T+ + LR K + +
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM----SRGGCSGLLRCGKGTTY 288
Query: 62 EGGVRNVA-ALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
EGGVR A A W + G V L D LPTL +AG
Sbjct: 289 EGGVREPALAFWPGHIAPG-VTHELASSLDLLPTLAALAG 327
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
L LD +VG ++ + +LV+F +DNG T+ + LR K + +
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM----SRGGCSGLLRCGKGTTY 288
Query: 62 EGGVRNVA-ALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
EGGVR A A W + G V L D LPTL +AG
Sbjct: 289 EGGVREPALAFWPGHIAPG-VTHELASSLDLLPTLAALAG 327
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
L LD +VG ++ + +LV+F +DNG T+ + LR K + +
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM----SRGGCSGLLRCGKGTTY 288
Query: 62 EGGVRNVA-ALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
EGGVR A A W + G V L D LPTL +AG
Sbjct: 289 EGGVREPALAFWPGHIAPG-VTHELASSLDLLPTLAALAG 327
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
L LD +VG ++ + +LV+F +DNG T+ + LR K + +
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM----SRGGCSGLLRCGKGTTY 288
Query: 62 EGGVRNVA-ALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
EGGVR A A W + G V L D LPTL +AG
Sbjct: 289 EGGVREPALAFWPGHIAPG-VTHELASSLDLLPTLAALAG 327
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
L LD +VG ++ + +LV+F +DNG T+ + LR K + +
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM----SRGGCSGLLRCGKGTTY 288
Query: 62 EGGVRNVA-ALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
EGGVR A A W + G V L D LPTL +AG
Sbjct: 289 EGGVREPALAFWPGHIAPG-VTHELASSLDLLPTLAALAG 327
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNT--ASNWPLRGTKYS 59
++ +D SVG+++ ++L+ F SD G V+ + G SN +G K +
Sbjct: 291 VEEMDWSVGQILNLLDELRLANDTLIYFTSDQGA-HVEEVSSKGEIHGGSNGIYKGGKAN 349
Query: 60 FHEGGVRNVAAL-WSPLLRKGQVLENLMHITDWLPTLYFIAG 100
EGG+R L W +++ GQ ++ D PT+ +AG
Sbjct: 350 NWEGGIRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAG 391
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 34/134 (25%)
Query: 1 MLKSLDESVGRVIQSXXXXXXXXNSLVVFISDNG------------GPTV---------D 39
M++ +D ++GRV+ N+ V+F+SDNG GP + +
Sbjct: 286 MVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDN 345
Query: 40 SLHFHGNT------------ASNWPLRGTKYSFHEGGVRNVAALWSPLL-RKGQVLENLM 86
SL G A+ P R K +GG+R A + P L R+G +
Sbjct: 346 SLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFA 405
Query: 87 HITDWLPTLYFIAG 100
+ D PTL +AG
Sbjct: 406 TVMDVTPTLLDLAG 419
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 2 LKSLDESVGRVIQSXXXXXXXXNSLVVFISDNG 34
+ +DE+VGR+I++ N++VVF SD+G
Sbjct: 283 ITGVDENVGRIIEALKQNNLFDNTIVVFTSDHG 315
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 47 TASNWPLRGTKYSFHEGGVRNVAALWS 73
+ +W L GTK G V +VA +W+
Sbjct: 169 SGDDWILTGTKMWITNGSVADVAVVWA 195
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 48 ASNWPLRGTKYSFHEGGVRNVAALWS 73
S+W L GTK G + +VA +W+
Sbjct: 165 GSDWILNGTKMWITNGNLADVATVWA 190
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 MLKSLDESVGRVIQSXXXXXXXXNSLVVFISDNGGPTVDSLHFHGNTASNWP 52
++ +D+ +GRV ++L++F SD+G D H G N P
Sbjct: 293 LITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHGEQLGDH-HLLGKIGYNDP 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,106,106
Number of Sequences: 62578
Number of extensions: 114330
Number of successful extensions: 182
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 14
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)